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Gene: Cdh23 (cadherin-related 23) Rattus norvegicus
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Symbol: Cdh23
Name: cadherin-related 23
RGD ID: 619760
Description: Exhibits protein N-terminus binding activity. Predicted to be involved in several processes, including animal organ morphogenesis; photoreceptor cell maintenance; and righting reflex. Localizes to apical part of cell. Human ortholog(s) of this gene implicated in Usher syndrome type 1D; autosomal recessive nonsyndromic deafness; autosomal recessive nonsyndromic deafness 12; and pituitary adenoma. Orthologous to human CDH23 (cadherin related 23); PARTICIPATES IN auditory mechanotransduction pathway; retinitis pigmentosa pathway; INTERACTS WITH 3,3',4,4',5-pentachlorobiphenyl; acrylamide; ammonium chloride.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: cadherin 23 (otocadherin); cadherin related 23; cadherin-23; otocadherin; W; Waltzing
Orthologs:
Homo sapiens (human) : CDH23 (cadherin related 23)  HGNC  Alliance
Mus musculus (house mouse) : Cdh23 (cadherin 23 (otocadherin))  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Cdh23 (cadherin related 23)
Pan paniscus (bonobo/pygmy chimpanzee) : CDH23 (cadherin related 23)
Canis lupus familiaris (dog) : CDH23 (cadherin related 23)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Cdh23 (cadherin related 23)
Sus scrofa (pig) : CDH23 (cadherin related 23)
Chlorocebus sabaeus (African green monkey) : CDH23 (cadherin related 23)
Heterocephalus glaber (naked mole-rat) : Cdh23 (cadherin related 23)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.02029,857,018 - 30,263,758 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2029,857,637 - 29,990,111 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02031,668,747 - 32,073,985 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42027,622,049 - 28,016,145 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.12027,635,850 - 28,029,945 (-)NCBI
Celera2029,678,961 - 30,059,893 (-)NCBICelera
Cytogenetic Map20q11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
Molecular Pathway Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Expression

RNA-SEQ Expression

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome

Strain Variation

Strain Sequence Variants (Rnor 6.0)

Additional Information

External Database Links
Nomenclature History
RGD Curation Notes
 
More on Cdh23
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

RGD Object Information
RGD ID: 619760
Created: 2002-08-06
Species: Rattus norvegicus
Last Modified: 2020-08-20
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.