Atat1 (alpha tubulin acetyltransferase 1)

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Gene: Atat1 (alpha tubulin acetyltransferase 1) Rattus norvegicus

Analyze

Symbol:

Atat1

Name:

alpha tubulin acetyltransferase 1

RGD ID:

1303066

Description:

Predicted to enable lysine N-acetyltransferase activity, acting on acetyl phosphate as donor and tubulin N-acetyltransferase activity. Predicted to be involved in several processes, including alpha-tubulin acetylation; response to mechanical stimulus; and response to pain. Predicted to act upstream of or within several processes, including dentate gyrus development; positive regulation of NLRP3 inflammasome complex assembly; and regulation of fat cell differentiation. Predicted to be located in Golgi apparatus; cytoskeleton; and cytosol. Predicted to be active in membrane. Orthologous to human ATAT1 (alpha tubulin acetyltransferase 1); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil; bisphenol A.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

3110080J08Rik; acetyltransferase MEC-17; acetyltransferase mec-17 homolog; alpha-TAT; alpha-TAT1; alpha-tubulin N-acetyltransferase; alpha-tubulin N-acetyltransferase 1; FLJ13158; hypothetical protein FLJ13158; hypothetical protein LOC361789; Mec17; RGD1303066; similar to RIKEN cDNA 2610110G12; TAT

RGD Orthologs

Human

Mouse

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	ATAT1 (alpha tubulin acetyltransferase 1)	HGNC	Ensembl, HomoloGene, Inparanoid, NCBI, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Atat1 (alpha tubulin acetyltransferase 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Atat1 (alpha tubulin acetyltransferase 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	ATAT1 (alpha tubulin acetyltransferase 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	ATAT1 (alpha tubulin acetyltransferase 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Atat1 (alpha tubulin acetyltransferase 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	ATAT1 (alpha tubulin acetyltransferase 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	ATAT1 (alpha tubulin acetyltransferase 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Atat1 (alpha tubulin acetyltransferase 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	C6orf136 (chromosome 6 open reading frame 136)	HGNC	EggNOG, Treefam
Alliance orthologs ³
Homo sapiens (human):	ATAT1 (alpha tubulin acetyltransferase 1)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Atat1 (alpha tubulin acetyltransferase 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	atat1 (alpha tubulin acetyltransferase 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG17003	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)
Drosophila melanogaster (fruit fly):	CG3967	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	atat-2	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PANTHER\|PhylomeDB)
Caenorhabditis elegans (roundworm):	mec-17	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	20	2,844,595 - 2,857,809 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	20	2,844,616 - 2,861,964 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	20	2,896,411 - 2,909,351 (+)	NCBI	Rnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0	20	2,901,381 - 2,914,321 (+)	NCBI	Rnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0	20	2,927,539 - 2,940,490 (+)	NCBI	Rnor_WKY
Rnor_6.0	20	3,351,269 - 3,364,565 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	20	3,351,303 - 3,364,565 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	20	5,448,793 - 5,462,088 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	20	2,992,405 - 3,005,364 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	20	2,992,631 - 3,005,583 (+)	NCBI
Celera	20	270,616 - 283,574 (+)	NCBI		Celera
Cytogenetic Map	20	p12	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Familial Prostate Cancer (ISO)

genetic disease (ISO)

High Myopia (ISO)

megacolon (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP)

4-hydroxyphenyl retinamide (ISO)

6-propyl-2-thiouracil (EXP)

antirheumatic drug (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP,ISO)

butanal (ISO)

cadmium atom (ISO)

cadmium dichloride (EXP,ISO)

cannabidiol (ISO)

carbon nanotube (ISO)

cisplatin (ISO)

cobalt dichloride (EXP)

crocidolite asbestos (ISO)

dibutyl phthalate (EXP)

dicrotophos (ISO)

dorsomorphin (ISO)

doxorubicin (ISO)

ethanol (ISO)

leflunomide (ISO)

nickel atom (EXP)

nickel sulfate (EXP)

paracetamol (EXP)

pentanal (ISO)

pirinixic acid (ISO)

pregnenolone 16alpha-carbonitrile (ISO)

SB 431542 (ISO)

sodium arsenite (ISO)

sunitinib (ISO)

trichloroethene (EXP)

valproic acid (ISO)

vinclozolin (EXP)

vorinostat (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

alpha-tubulin acetylation (IBA,IEA,ISO,ISS)

dentate gyrus development (ISO)

microtubule cytoskeleton organization (ISO)

neuron development (IEA)

NLRP3 inflammasome complex assembly (ISO)

positive regulation of NLRP3 inflammasome complex assembly (ISO)

regulation of fat cell differentiation (ISO)

regulation of microtubule cytoskeleton organization (IEA)

response to mechanical stimulus (ISO)

response to pain (ISO)

spermatogenesis (ISO)

Cellular Component

anchoring junction (IEA)

axon (IEA)

clathrin-coated pit (IEA)

cytoplasm (IEA)

cytosol (IEA)

cytosol (ISO)

focal adhesion (IEA)

Golgi apparatus (IEA)

Golgi apparatus (ISO)

membrane (ISO)

microtubule (IEA)

microtubule bundle (ISO)

mitotic spindle (ISO)

spindle (IEA)

Molecular Function

acetyltransferase activity (ISO)

lysine N-acetyltransferase activity, acting on acetyl phosphate as donor (ISO,ISS)

tubulin N-acetyltransferase activity (IBA,IEA,ISO,ISS)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:12477932	PMID:16751776	PMID:20829795	PMID:22972992	PMID:23071314	PMID:23126280	PMID:23502856	PMID:23720746	PMID:23748901	PMID:24906155	PMID:26700226	PMID:27314403
PMID:28505206	PMID:33626373

Genomics

Comparative Map Data

Atat1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	20	2,844,595 - 2,857,809 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	20	2,844,616 - 2,861,964 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	20	2,896,411 - 2,909,351 (+)	NCBI	Rnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0	20	2,901,381 - 2,914,321 (+)	NCBI	Rnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0	20	2,927,539 - 2,940,490 (+)	NCBI	Rnor_WKY
Rnor_6.0	20	3,351,269 - 3,364,565 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	20	3,351,303 - 3,364,565 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	20	5,448,793 - 5,462,088 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	20	2,992,405 - 3,005,364 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	20	2,992,631 - 3,005,583 (+)	NCBI
Celera	20	270,616 - 283,574 (+)	NCBI		Celera
Cytogenetic Map	20	p12	NCBI

ATAT1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	6	30,626,874 - 30,646,821 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p13 Ensembl	6	30,626,842 - 30,646,823 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	6	30,594,651 - 30,614,598 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	6	30,702,632 - 30,722,577 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	6	30,702,631 - 30,720,425	NCBI
Celera	6	32,192,731 - 32,212,715 (+)	NCBI		Celera
Cytogenetic Map	6	p21.33	NCBI
HuRef	6	30,394,781 - 30,414,765 (+)	NCBI		HuRef
CHM1_1	6	30,596,723 - 30,616,706 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	6	30,491,055 - 30,511,001 (+)	NCBI		T2T-CHM13v2.0

Atat1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	17	36,208,487 - 36,220,971 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	17	36,208,487 - 36,220,967 (-)	Ensembl		GRCm39 Ensembl
GRCm38	17	35,897,595 - 35,910,086 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	17	35,897,595 - 35,910,075 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	17	36,034,540 - 36,047,013 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	17	35,507,905 - 35,518,098 (-)	NCBI		MGSCv36	mm8
Celera	17	39,406,855 - 39,419,330 (-)	NCBI		Celera
Cytogenetic Map	17	B1	NCBI

Atat1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955583	643,575 - 652,393 (+)	NCBI	ChiLan1.0	ChiLan1.0

ATAT1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	6	31,238,771 - 31,261,795 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	6	31,238,778 - 31,261,611 (+)	Ensembl	panpan1.1		panPan2
Mhudiblu_PPA_v0	6	30,368,847 - 30,391,595 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3

ATAT1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	12	441,847 - 456,349 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	12	441,895 - 456,152 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	12	579,489 - 593,991 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	12	586,158 - 599,574 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	12	586,171 - 599,379 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	12	442,543 - 457,251 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	12	511,819 - 526,707 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	12	581,863 - 595,374 (+)	NCBI		UU_Cfam_GSD_1.0

Atat1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404946	33,935,469 - 33,954,419 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936837	300,715 - 319,623 (+)	Ensembl	SpeTri2.0
SpeTri2.0	NW_004936837	300,765 - 319,742 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ATAT1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	7	23,173,447 - 23,185,458 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	7	23,173,138 - 23,185,463 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	7	26,895,036 - 26,907,375 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

ATAT1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	17	41,807,405 - 41,830,670 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	17	41,807,291 - 41,830,000 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666044	30,320,597 - 30,343,906 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Atat1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624754	25,058,204 - 25,069,561 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624754	25,058,312 - 25,069,052 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Atat1
49 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	22
Count of miRNA genes:	22
Interacting mature miRNAs:	22
Transcripts:	ENSRNOT00000001065
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
724519	Bp144	Blood pressure QTL 144		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	20	1	3624629	Rat
1354642	Despr15	Despair related QTL 15		0.0027	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	20	1	24159021	Rat
1600382	Edcs3	Endometrial carcinoma susceptibility QTL3	3.5	0.003	uterus morphology trait (VT:0001120)	percentage of study population developing endometrioid carcinoma during a period of time (CMO:0001759)	20	1	25159026	Rat
2317851	Alcrsp22	Alcohol response QTL 22	3.2	0.05	response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	20	1	27339237	Rat
1641893	Alcrsp7	Alcohol response QTL 7			response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	20	1	27339237	Rat
8694189	Bw153	Body weight QTL 153	3.13	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	20	1	29191651	Rat
9590275	Scort15	Serum corticosterone level QTL 15	3.48	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	20	1	29191651	Rat
7411650	Foco23	Food consumption QTL 23	20.7	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	20	1	29191651	Rat
9590109	Sffal8	Serum free fatty acids level QTL 8	5.32	0.01	blood free fatty acid amount (VT:0001553)	plasma free fatty acids level (CMO:0000546)	20	1	29191651	Rat
9589155	Insul32	Insulin level QTL 32	6.38	0.001	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	20	1	29191651	Rat
6893685	Bw111	Body weight QTL 111	2.7	0.004	body mass (VT:0001259)	body weight (CMO:0000012)	20	1	32578807	Rat
7411668	Foco32	Food consumption QTL 32	8	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	20	1	36600972	Rat
9590252	Scort12	Serum corticosterone level QTL 12	20.46	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	20	1	36600972	Rat
2305926	Iddm37	Insulin dependent diabetes mellitus QTL 37	6		blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	20	1527842	46527842	Rat
2306850	Pia40	Pristane induced arthritis QTL 40		0.0001	joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	20	1527959	5304575	Rat
1641915	Colcr9	Colorectal carcinoma resistance QTL 9	2.97	0.0024	intestine integrity trait (VT:0010554)	benign colorectal tumor number (CMO:0001795)	20	1530655	46530655	Rat
1598816	Memor12	Memory QTL 12	2.4		exploratory behavior trait (VT:0010471)	average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)	20	2606836	47606836	Rat
61448	Ciaa1	CIA Autoantibody QTL 1	30	0.001	blood autoantibody amount (VT:0003725)	calculated serum anti-rat type 2 collagen autoantibody titer (CMO:0001281)	20	2646395	4597031	Rat
61472	Aia1	Adjuvant induced arthritis QTL 1	18	0.001	joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	20	2646395	4597031	Rat

Markers in Region

BE117058

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	20	2,855,567 - 2,855,717 (+)	MAPPER	mRatBN7.2
Rnor_6.0	20	3,362,236 - 3,362,385	NCBI	Rnor6.0
Rnor_5.0	20	5,459,759 - 5,459,908	UniSTS	Rnor5.0
RGSC_v3.4	20	3,003,338 - 3,003,487	UniSTS	RGSC3.4
Celera	20	281,548 - 281,697	UniSTS
RH 3.4 Map	5	1157.1	UniSTS
Cytogenetic Map	20	p12	UniSTS

RH128043

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	20	2,843,981 - 2,844,162 (+)	MAPPER	mRatBN7.2
Rnor_6.0	20	3,350,651 - 3,350,831	NCBI	Rnor6.0
Rnor_5.0	20	5,448,174 - 5,448,354	UniSTS	Rnor5.0
RGSC_v3.4	20	2,991,753 - 2,991,933	UniSTS	RGSC3.4
Celera	20	269,964 - 270,144	UniSTS
RH 3.4 Map	20	15.8	UniSTS
Cytogenetic Map	20	p12	UniSTS

AI548047

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	20	2,857,364 - 2,857,528 (+)	MAPPER	mRatBN7.2
Rnor_6.0	20	3,364,336 - 3,364,499	NCBI	Rnor6.0
Rnor_5.0	20	5,461,859 - 5,462,022	UniSTS	Rnor5.0
RGSC_v3.4	20	3,005,135 - 3,005,298	UniSTS	RGSC3.4
Celera	20	283,345 - 283,508	UniSTS
RH 3.4 Map	20	52.1	UniSTS
Cytogenetic Map	20	p12	UniSTS

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium		20	4	4	2	4			66	20	33	1
Low	3	23	53	37	17	37	6	9	8	15	8	10	6
Below cutoff							2	2					2

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_212498	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006255950	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006255951	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017601673	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017601674	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017601675	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039098791	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039098792	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039098793	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039098794	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039098795	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039098796	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039098797	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039098798	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005497274	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005497275	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BX883048	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474118	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	DQ608917	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JACYVU010000323	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSRNOT00000001065 ⟹ ENSRNOP00000001065

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	20	2,844,616 - 2,857,574 (+)	Ensembl
Rnor_6.0 Ensembl	20	3,351,303 - 3,364,565 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000001077 ⟹ ENSRNOP00000001077

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	20	2,844,616 - 2,861,964 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000078758

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	20	3,359,963 - 3,360,423 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000079253

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	20	3,351,317 - 3,359,172 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000079654 ⟹ ENSRNOP00000073934

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	20	2,844,622 - 2,857,577 (+)	Ensembl
Rnor_6.0 Ensembl	20	3,363,737 - 3,364,564 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000079738

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	20	3,351,899 - 3,360,095 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000080158

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	20	2,844,616 - 2,855,719 (+)	Ensembl
Rnor_6.0 Ensembl	20	3,351,305 - 3,362,430 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000080419 ⟹ ENSRNOP00000074047

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	20	2,844,634 - 2,857,586 (+)	Ensembl
Rnor_6.0 Ensembl	20	3,351,303 - 3,364,557 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000082342

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	20	3,363,639 - 3,364,012 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000082345

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	20	3,351,646 - 3,352,710 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000086216

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	20	3,360,990 - 3,361,703 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000086503 ⟹ ENSRNOP00000075030

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	20	2,844,634 - 2,857,586 (+)	Ensembl
Rnor_6.0 Ensembl	20	3,351,304 - 3,364,565 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000087295

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	20	3,363,676 - 3,364,565 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000089667

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	20	3,351,305 - 3,362,388 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000090225

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	20	3,363,852 - 3,364,565 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000091735

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	20	3,351,517 - 3,352,689 (+)	Ensembl

RefSeq Acc Id:

NM_212498 ⟹ NP_997663

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	20	2,844,634 - 2,857,594 (+)	NCBI
Rnor_6.0	20	3,351,303 - 3,364,565 (+)	NCBI
Rnor_5.0	20	5,448,793 - 5,462,088 (+)	NCBI
RGSC_v3.4	20	2,992,405 - 3,005,364 (+)	RGD
Celera	20	270,616 - 283,574 (+)	RGD

Sequence:

show sequence

GCACAATGGGCCATGGAGTTCCCGTTCGATGTGGATGCGCTGTTCCCGGAGCGGATCACCGTGC
TGGACCAGCACCTGCGGCCTCCGGCCCGCCGACCCGGAACCACAACGCCGGCCCGTGTGGATCT
GCAGCAGCAAATCATGACTATTGTAGATGAGCTGGGCAAGGCTTCTGCCAAGGCTCAGCACCTC
CCTGCACCCATCACCAGCGCTTTGAGGATGCAGAGCAACCGACACGTTATTTATGTACTAAAGG
ACACCTCAGCCCGCCCGGCAGGGAAAGGAGCCATTATTGGTTTCCTCAAAGTTGGATACAAGAA
GCTCTTTGTACTGGATGACCGTGAGGCTCACAATGAGGTAGAACCCCTTTGCATTCTGGACTTT
TACATCCACGAGTCAGTGCAACGGCACGGCCATGGGAGAGAACTTTTCCAGTATATGTTACAGA
AAGAGCGAGTGGAACCACACCAACTTGCCATTGACCGACCATCACCGAAACTGCTCAAGTTCCT
GAACAAGCACTACAACCTGGAGACCACAGTCCCACAGGTGAACAACTTCGTGATCTTCGAAGGC
TTCTTTGCCCATCAACACCGGTCCCCCACTCCCTCTCTGAGGGCAACTCGACACTCTCGTGCTG
CTGTGGTCGATCCTATACCCGCTGCTCCGGCAAGGAAGCTGCCACCGAAAAGAGCAGAGGGAGA
CATTAAGCCATACTCCTCCAGTGACAGAGAATTCCTGAAGGTGGCTGTGGAGCCTCCCTGGCCC
CTGAACAGGGCCCCCCGGCGTGCCACACCTCCAGCACACCCACCTCCACGTTCTAGCAGCCTGG
GCAACTCGCCGGATCGGGGTCCCCTTCGGCCCTTCGTGCCAGAGCAGGAGCTGCTTCGATCCCT
GCGTCTCTGTCCCCCACACCCCACTGCACGCCTTCTGCTGGCCACTGACCCTGGAGGCAGCCCA
GCCCAGCGCAGACGCACCAGGGAGACTCCCTGGGGGCTGGTAGCCCAAAGCTGCCACTACAGCC
GCCATGGGGGATTCAATACCTCATTCCTGGGTACAGGCAACCAAGAACGGAAGCAGGGGGAACA
GGAAGCAGAGGATAGGTCGGCCAGTGAGGATCAGGTCTTGTTACAGGATGGGTCTGGGGAGGAA
CCTACGCATACAGTTGCTCCAAGGGCCCAGGCTCCACCGGCCCAGTCCTGGATGGTGGGTGGGG
ACATACTGAACGCCAGGGTCATTCGAAACCTGCAGGAACGCCGCAACACCAGGCCTTGGTGACC
ACAACCAAAGCTTGGCCCTCATAATGGATGTACTCATTCATTCATTCATTCAACAGGCCTGTCA
GCTTCAGATCCTTTGTATCTTATTTTTAACCAGAGCAATAAAAATATTTATTTGTTATCACTAT
AGCTACTGAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006255950 ⟹ XP_006256012

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	20	2,844,599 - 2,855,750 (+)	NCBI
Rnor_6.0	20	3,351,270 - 3,362,387 (+)	NCBI
Rnor_5.0	20	5,448,793 - 5,462,088 (+)	NCBI

Sequence:

show sequence

GGAAGTGACGTTTTGTGGGGCGTGTCCGATCCCGCACAATGGGCCATGGAGTTCCCGTTCGATG
TGGATGCGCTGTTCCCGGAGCGGATCACCGTGCTGGACCAGCACCTGCGGCCTCCGGCCCGCCG
ACCCGGAACCACAACGCCGGCCCGTGTGGATCTGCAGCAGCAAATCATGACTATTGTAGATGAG
CTGGGCAAGGCTTCTGCCAAGGCTCAGCACCTCCCTGCACCCATCACCAGCGCTTTGAGGATGC
AGAGCAACCGACACGTTATTTATGTACTAAAGGACACCTCAGCCCGCCCGGCAGGGAAAGGAGC
CATTATTGGTTTCCTCAAAGTTGGATACAAGAAGCTCTTTGTACTGGATGACCGTGAGGCTCAC
AATGAGGTAGAACCCCTTTGCATTCTGGACTTTTACATCCACGAGTCAGTGCAACGGCACGGCC
ATGGGAGAGAACTTTTCCAGTATATGTTACAGAAAGAGCGAGTGGAACCACACCAACTTGCCAT
TGACCGACCATCACCGAAACTGCTCAAGTTCCTGAACAAGCACTACAACCTGGAGACCACAGTC
CCACAGGTGAACAACTTCGTGATCTTCGAAGGCTTCTTTGCCCATCAACACCGGTCCCCCACTC
CCTCTCTGAGGGCAACTCGACACTCTCGTGCTGCTGTGGTCGATCCTATACCCGCTGCTCCGGC
AAGGAAGCTGCCACCGAAAAGAGCAGAGGGAGACATTAAGCCATACTCCTCCAGTGACAGAGAA
TTCCTGAAGGTGGCTGTGGAGCCTCCCTGGCCCCTGAACAGGGCCCCCCGGCGTGCCACACCTC
CAGCACACCCACCTCCACGTTCTAGCAGCCTGGGCAACTCGCCGGATCGGGGTCCCCTTCGGCC
CTTCGTGCCAGAGCAGGAGCTGCTTCGATCCCTGCGTCTCTGTCCCCCACACCCCACTGCACGC
CTTCTGCTGGCCACTGACCCTGGAGGCAGCCCAGCCCAGCGCAGACGCACCAGCTCCCTTCCCC
GATCTGATGAGAGTCGATACTGACAGGAAACCTGGGAGGGCAGACGCGCTCCCTCCTACAACTT
GCAACCCACTCCACATTTTTTTTCTTCCTCTTTCTTGAACGAATGGGTTGCCAGGGTTCTAAAT
AGCCTAATACTTTGTAGCTTTTCTTACCACAGAAGACACCCCTATACTCCCGACCTGTGCTATG
ATACTCTCCCACAGACAGGCTGTTCTGTTCCCAGATCTCTCGGCTAAATGGCTCCTACTGACTC
CCTAGAGAAGCACACTCTGCTTATAGTCAGACTCCAGACCACCAGAGATCCCAGGGCCTCCTCT
GCCAGGGAAACCTTTAAGGGGTGTCCTGCCAGTGGATTAAATCCCTCCACAGTGCCCACTAGTA
GCTCTAATCCTGCATCTTCCTGCCAAACAAACCTGCCCCATTAGTCTGACAAGCTCTGCTTCAG
AGCAGTTCGTGCTGGTAGGACGAGGGGGTGGCTTCTCCTCCCAAAGTTGCCAAACTCTTACCCT
GCAAGTGTTATGTAGATATGTCAGGCTAAGGCTACTGGGGGCCTCTGCAGGAGACTAACAGACT
CCACCCTTTGTTCAGATAAGCGGAGTCTGTCTCTGGGTACTAGATCCCCTGCAAACACTCCAGG
ACCACTTAGCTGGGTCTCTGAAGATAAGCCTGGTTCTTTAGATCCTGGAATCCCTGCTGTCCTC
CCTGCCTCCCTAGTAAATAAACTTGTGAGAGTGTCTTGAGATGAGATGGGGACCACCCTTGTGC
TGCCCCGCCTTCTTTTTCCTTCCTACCAAGAGCCTCCTTCCCTGCTTCCATGCCCAGGGTATAG
AAGGACCCCTCTTCCTCCCACACCCACCCTCTAAATGCATTAGATCAGGTGCCTCACTGTGTCC
CTAAGTCCTTGGGAGCAGGACCTCCCTCCTCCCTTACTCCTTCCTGACTCCTTTTCCCTCTCAG
TGTTGTCTCAATAAAGTGTGGGTTCTTCTGTA

hide sequence

RefSeq Acc Id:

XM_006255951 ⟹ XP_006256013

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	20	2,844,599 - 2,855,750 (+)	NCBI
Rnor_6.0	20	3,351,270 - 3,362,387 (+)	NCBI
Rnor_5.0	20	5,448,793 - 5,462,088 (+)	NCBI

Sequence:

show sequence

GGAAGTGACGTTTTGTGGGGCGTGTCCGATCCCGCACAATGGGCCATGGAGTTCCCGTTCGATG
TGGATGCGCTGTTCCCGGAGCGGATCACCGTGCTGGACCAGCACCTGCGGCCTCCGGCCCGCCG
ACCCGGAACCACAACGCCGGCCCGTGTGGATCTGCAGCAGCAAATCATGACTATTGTAGATGAG
CTGGGCAAGGCTTCTGCCAAGGCTCAGCACCTCCCTGCACCCATCACCAGCGCTTTGAGGATGC
AGAGCAACCGACACGTTATTTATGTACTAAAGGACACCTCAGCCCGCCCGGCAGGGAAAGGAGC
CATTATTGGTTTCCTCAAAGTTGGATACAAGAAGCTCTTTGTACTGGATGACCGTGAGGCTCAC
AATGAGGTAGAACCCCTTTGCATTCTGGACTTTTACATCCACGAGTCAGTGCAACGGCACGGCC
ATGGGAGAGAACTTTTCCAGTATATGTTACAGAAAGAGCGAGTGGAACCACACCAACTTGCCAT
TGACCGACCATCACCGAAACTGCTCAAGTTCCTGAACAAGCACTACAACCTGGAGACCACAGTC
CCACAGGTGAACAACTTCGTGATCTTCGAAGGCTTCTTTGCCCATCAACACCCTCCGGCAAGGA
AGCTGCCACCGAAAAGAGCAGAGGGAGACATTAAGCCATACTCCTCCAGTGACAGAGAATTCCT
GAAGGTGGCTGTGGAGCCTCCCTGGCCCCTGAACAGGGCCCCCCGGCGTGCCACACCTCCAGCA
CACCCACCTCCACGTTCTAGCAGCCTGGGCAACTCGCCGGATCGGGGTCCCCTTCGGCCCTTCG
TGCCAGAGCAGGAGCTGCTTCGATCCCTGCGTCTCTGTCCCCCACACCCCACTGCACGCCTTCT
GCTGGCCACTGACCCTGGAGGCAGCCCAGCCCAGCGCAGACGCACCAGCTCCCTTCCCCGATCT
GATGAGAGTCGATACTGACAGGAAACCTGGGAGGGCAGACGCGCTCCCTCCTACAACTTGCAAC
CCACTCCACATTTTTTTTCTTCCTCTTTCTTGAACGAATGGGTTGCCAGGGTTCTAAATAGCCT
AATACTTTGTAGCTTTTCTTACCACAGAAGACACCCCTATACTCCCGACCTGTGCTATGATACT
CTCCCACAGACAGGCTGTTCTGTTCCCAGATCTCTCGGCTAAATGGCTCCTACTGACTCCCTAG
AGAAGCACACTCTGCTTATAGTCAGACTCCAGACCACCAGAGATCCCAGGGCCTCCTCTGCCAG
GGAAACCTTTAAGGGGTGTCCTGCCAGTGGATTAAATCCCTCCACAGTGCCCACTAGTAGCTCT
AATCCTGCATCTTCCTGCCAAACAAACCTGCCCCATTAGTCTGACAAGCTCTGCTTCAGAGCAG
TTCGTGCTGGTAGGACGAGGGGGTGGCTTCTCCTCCCAAAGTTGCCAAACTCTTACCCTGCAAG
TGTTATGTAGATATGTCAGGCTAAGGCTACTGGGGGCCTCTGCAGGAGACTAACAGACTCCACC
CTTTGTTCAGATAAGCGGAGTCTGTCTCTGGGTACTAGATCCCCTGCAAACACTCCAGGACCAC
TTAGCTGGGTCTCTGAAGATAAGCCTGGTTCTTTAGATCCTGGAATCCCTGCTGTCCTCCCTGC
CTCCCTAGTAAATAAACTTGTGAGAGTGTCTTGAGATGAGATGGGGACCACCCTTGTGCTGCCC
CGCCTTCTTTTTCCTTCCTACCAAGAGCCTCCTTCCCTGCTTCCATGCCCAGGGTATAGAAGGA
CCCCTCTTCCTCCCACACCCACCCTCTAAATGCATTAGATCAGGTGCCTCACTGTGTCCCTAAG
TCCTTGGGAGCAGGACCTCCCTCCTCCCTTACTCCTTCCTGACTCCTTTTCCCTCTCAGTGTTG
TCTCAATAAAGTGTGGGTTCTTCTGTA

hide sequence

RefSeq Acc Id:

XM_017601675 ⟹ XP_017457164

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	20	2,844,598 - 2,855,750 (+)	NCBI
Rnor_6.0	20	3,351,269 - 3,362,387 (+)	NCBI

Sequence:

show sequence

CGGAAGTGACGTTTTGTGGGGCGTGTCCGATCCCGCACAATGGGCCATGGAGTTCCCGTTCGAT
GTGGATGCGCTGTTCCCGGAGCGGATCACCGTGCTGGACCAGCACCTGCGGCCTCCGGCCCGCC
GACCCGGAACCACAACGCCGGCCCGTGTGGATCTGCAGCAGCAAATCATGACTATTGTAGATGA
GCTGGGCAAGGCTTCTGCCAAGGCTCAGCACCTCCCTGCACCCATCACCAGCGCTTTGAGGATG
CAGAGCAACCGACACGTTATTTATGTACTAAAGGACACCTCAGCCCGCCCGGCAGGGAAAGGAG
CCATTATTGGTTTCCTCAAAGTTGGATACAAGAAGCTCTTTGTACTGGATGACCGTGAGGCTCA
CAATGAGGTAGAACCCCTTTGCATTCTGGACTTTTACATCCACGAGTCAGTGCAACGGCACGGC
CATGGGAGAGAACTTTTCCAGTATATGTTACAGGTACCGGAAATAGATCTAAAAGGCTCTTCAC
CCCGAAGCTCAAAGAGGCCCTGCTCCATGCCCCACAATTGGTCCATTTTCCTCTGTATTCCCTT
GCCAGGCTCCCAGTTGCCTGCTAGCATGCTCCTCCTACCGCCCCCTGCCCCCAAGCTTCCCCTT
TTCCTGCAGAAAGAGCGAGTGGAACCACACCAACTTGCCATTGACCGACCATCACCGAAACTGC
TCAAGTTCCTGAACAAGCACTACAACCTGGAGACCACAGTCCCACAGGTGAACAACTTCGTGAT
CTTCGAAGGCTTCTTTGCCCATCAACACCGGTCCCCCACTCCCTCTCTGAGGGCAACTCGACAC
TCTCGTGCTGCTGTGGTCGATCCTATACCCGCTGCTCCGGCAAGGAAGCTGCCACCGAAAAGAG
CAGAGGGAGACATTAAGCCATACTCCTCCAGTGACAGAGAATTCCTGAAGGTGGCTGTGGAGCC
TCCCTGGCCCCTGAACAGGGCCCCCCGGCGTGCCACACCTCCAGCACACCCACCTCCACGTTCT
AGCAGCCTGGGCAACTCGCCGGATCGGGGTCCCCTTCGGCCCTTCGTGCCAGAGCAGGAGCTGC
TTCGATCCCTGCGTCTCTGTCCCCCACACCCCACTGCACGCCTTCTGCTGGCCACTGACCCTGG
AGGCAGCCCAGCCCAGCGCAGACGCACCAGCTCCCTTCCCCGATCTGATGAGAGTCGATACTGA
CAGGAAACCTGGGAGGGCAGACGCGCTCCCTCCTACAACTTGCAACCCACTCCACATTTTTTTT
CTTCCTCTTTCTTGAACGAATGGGTTGCCAGGGTTCTAAATAGCCTAATACTTTGTAGCTTTTC
TTACCACAGAAGACACCCCTATACTCCCGACCTGTGCTATGATACTCTCCCACAGACAGGCTGT
TCTGTTCCCAGATCTCTCGGCTAAATGGCTCCTACTGACTCCCTAGAGAAGCACACTCTGCTTA
TAGTCAGACTCCAGACCACCAGAGATCCCAGGGCCTCCTCTGCCAGGGAAACCTTTAAGGGGTG
TCCTGCCAGTGGATTAAATCCCTCCACAGTGCCCACTAGTAGCTCTAATCCTGCATCTTCCTGC
CAAACAAACCTGCCCCATTAGTCTGACAAGCTCTGCTTCAGAGCAGTTCGTGCTGGTAGGACGA
GGGGGTGGCTTCTCCTCCCAAAGTTGCCAAACTCTTACCCTGCAAGTGTTATGTAGATATGTCA
GGCTAAGGCTACTGGGGGCCTCTGCAGGAGACTAACAGACTCCACCCTTTGTTCAGATAAGCGG
AGTCTGTCTCTGGGTACTAGATCCCCTGCAAACACTCCAGGACCACTTAGCTGGGTCTCTGAAG
ATAAGCCTGGTTCTTTAGATCCTGGAATCCCTGCTGTCCTCCCTGCCTCCCTAGTAAATAAACT
TGTGAGAGTGTCTTGAGATGAGATGGGGACCACCCTTGTGCTGCCCCGCCTTCTTTTTCCTTCC
TACCAAGAGCCTCCTTCCCTGCTTCCATGCCCAGGGTATAGAAGGACCCCTCTTCCTCCCACAC
CCACCCTCTAAATGCATTAGATCAGGTGCCTCACTGTGTCCCTAAGTCCTTGGGAGCAGGACCT
CCCTCCTCCCTTACTCCTTCCTGACTCCTTTTCCCTCTCAGTGTTGTCTCAATAAAGTGTGGGT
TCTTCTGTA

hide sequence

RefSeq Acc Id:

XM_039098791 ⟹ XP_038954719

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	20	2,844,596 - 2,857,594 (+)	NCBI

RefSeq Acc Id:

XM_039098792 ⟹ XP_038954720

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	20	2,844,596 - 2,857,579 (+)	NCBI

RefSeq Acc Id:

XM_039098793 ⟹ XP_038954721

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	20	2,844,596 - 2,857,579 (+)	NCBI

RefSeq Acc Id:

XM_039098794 ⟹ XP_038954722

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	20	2,844,596 - 2,857,809 (+)	NCBI

RefSeq Acc Id:

XM_039098795 ⟹ XP_038954723

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	20	2,844,596 - 2,857,809 (+)	NCBI

RefSeq Acc Id:

XM_039098796 ⟹ XP_038954724

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	20	2,844,599 - 2,857,594 (+)	NCBI

RefSeq Acc Id:

XM_039098797 ⟹ XP_038954725

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	20	2,844,599 - 2,857,579 (+)	NCBI

RefSeq Acc Id:

XM_039098798 ⟹ XP_038954726

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	20	2,844,599 - 2,856,928 (+)	NCBI

RefSeq Acc Id:

XR_005497274

RefSeq Status:

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	20	2,844,595 - 2,854,073 (+)	NCBI

RefSeq Acc Id:

XR_005497275

RefSeq Status:

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	20	2,844,599 - 2,854,073 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_997663	(Get FASTA)	NCBI Sequence Viewer
	XP_006256012	(Get FASTA)	NCBI Sequence Viewer
	XP_006256013	(Get FASTA)	NCBI Sequence Viewer
	XP_017457164	(Get FASTA)	NCBI Sequence Viewer
	XP_038954719	(Get FASTA)	NCBI Sequence Viewer
	XP_038954720	(Get FASTA)	NCBI Sequence Viewer
	XP_038954721	(Get FASTA)	NCBI Sequence Viewer
	XP_038954722	(Get FASTA)	NCBI Sequence Viewer
	XP_038954723	(Get FASTA)	NCBI Sequence Viewer
	XP_038954724	(Get FASTA)	NCBI Sequence Viewer
	XP_038954725	(Get FASTA)	NCBI Sequence Viewer
	XP_038954726	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	CAE84036	(Get FASTA)	NCBI Sequence Viewer
	EDL86727	(Get FASTA)	NCBI Sequence Viewer
	EDL86728	(Get FASTA)	NCBI Sequence Viewer
	EDL86729	(Get FASTA)	NCBI Sequence Viewer
	EDL86730	(Get FASTA)	NCBI Sequence Viewer
	EDL86731	(Get FASTA)	NCBI Sequence Viewer
	Q6MG11	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:

NP_997663 ⟸ NM_212498

- UniProtKB:

Q6MG11 (UniProtKB/Swiss-Prot)

- Sequence:

show sequence

MEFPFDVDALFPERITVLDQHLRPPARRPGTTTPARVDLQQQIMTIVDELGKASAKAQHLPAPI
TSALRMQSNRHVIYVLKDTSARPAGKGAIIGFLKVGYKKLFVLDDREAHNEVEPLCILDFYIHE
SVQRHGHGRELFQYMLQKERVEPHQLAIDRPSPKLLKFLNKHYNLETTVPQVNNFVIFEGFFAH
QHRSPTPSLRATRHSRAAVVDPIPAAPARKLPPKRAEGDIKPYSSSDREFLKVAVEPPWPLNRA
PRRATPPAHPPPRSSSLGNSPDRGPLRPFVPEQELLRSLRLCPPHPTARLLLATDPGGSPAQRR
RTRETPWGLVAQSCHYSRHGGFNTSFLGTGNQERKQGEQEAEDRSASEDQVLLQDGSGEEPTHT
VAPRAQAPPAQSWMVGGDILNARVIRNLQERRNTRPW

hide sequence

RefSeq Acc Id:	XP_006256012 ⟸ XM_006255950
- Peptide Label:	isoform X9
- UniProtKB:	A0A8I6A4A0 (UniProtKB/TrEMBL)
- Sequence:	show sequence MEFPFDVDALFPERITVLDQHLRPPARRPGTTTPARVDLQQQIMTIVDELGKASAKAQHLPAPI TSALRMQSNRHVIYVLKDTSARPAGKGAIIGFLKVGYKKLFVLDDREAHNEVEPLCILDFYIHE SVQRHGHGRELFQYMLQKERVEPHQLAIDRPSPKLLKFLNKHYNLETTVPQVNNFVIFEGFFAH QHRSPTPSLRATRHSRAAVVDPIPAAPARKLPPKRAEGDIKPYSSSDREFLKVAVEPPWPLNRA PRRATPPAHPPPRSSSLGNSPDRGPLRPFVPEQELLRSLRLCPPHPTARLLLATDPGGSPAQRR RTSSLPRSDESRY hide sequence

RefSeq Acc Id:

XP_006256013 ⟸ XM_006255951

- Peptide Label:

isoform X10

- Sequence:

show sequence

MEFPFDVDALFPERITVLDQHLRPPARRPGTTTPARVDLQQQIMTIVDELGKASAKAQHLPAPI
TSALRMQSNRHVIYVLKDTSARPAGKGAIIGFLKVGYKKLFVLDDREAHNEVEPLCILDFYIHE
SVQRHGHGRELFQYMLQKERVEPHQLAIDRPSPKLLKFLNKHYNLETTVPQVNNFVIFEGFFAH
QHPPARKLPPKRAEGDIKPYSSSDREFLKVAVEPPWPLNRAPRRATPPAHPPPRSSSLGNSPDR
GPLRPFVPEQELLRSLRLCPPHPTARLLLATDPGGSPAQRRRTSSLPRSDESRY

hide sequence

RefSeq Acc Id:

XP_017457164 ⟸ XM_017601675

- Peptide Label:

isoform X7

- Sequence:

show sequence

MEFPFDVDALFPERITVLDQHLRPPARRPGTTTPARVDLQQQIMTIVDELGKASAKAQHLPAPI
TSALRMQSNRHVIYVLKDTSARPAGKGAIIGFLKVGYKKLFVLDDREAHNEVEPLCILDFYIHE
SVQRHGHGRELFQYMLQVPEIDLKGSSPRSSKRPCSMPHNWSIFLCIPLPGSQLPASMLLLPPP
APKLPLFLQKERVEPHQLAIDRPSPKLLKFLNKHYNLETTVPQVNNFVIFEGFFAHQHRSPTPS
LRATRHSRAAVVDPIPAAPARKLPPKRAEGDIKPYSSSDREFLKVAVEPPWPLNRAPRRATPPA
HPPPRSSSLGNSPDRGPLRPFVPEQELLRSLRLCPPHPTARLLLATDPGGSPAQRRRTSSLPRS
DESRY

hide sequence

RefSeq Acc Id:

ENSRNOP00000074047 ⟸ ENSRNOT00000080419

RefSeq Acc Id:

ENSRNOP00000073934 ⟸ ENSRNOT00000079654

RefSeq Acc Id:

ENSRNOP00000075030 ⟸ ENSRNOT00000086503

RefSeq Acc Id:

ENSRNOP00000001065 ⟸ ENSRNOT00000001065

RefSeq Acc Id:	XP_038954723 ⟸ XM_039098795
- Peptide Label:	isoform X5

RefSeq Acc Id:	XP_038954722 ⟸ XM_039098794
- Peptide Label:	isoform X4

RefSeq Acc Id:	XP_038954719 ⟸ XM_039098791
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038954721 ⟸ XM_039098793
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_038954720 ⟸ XM_039098792
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038954724 ⟸ XM_039098796
- Peptide Label:	isoform X6

RefSeq Acc Id:	XP_038954725 ⟸ XM_039098797
- Peptide Label:	isoform X8
- UniProtKB:	A0A0G2K6T3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038954726 ⟸ XM_039098798
- Peptide Label:	isoform X11

RefSeq Acc Id:

ENSRNOP00000001077 ⟸ ENSRNOT00000001077

Protein Domains

N-acetyltransferase

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q6MG11-F1-model_v2	AlphaFold	Q6MG11	1-421	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13701299

Promoter ID:

EPDNEW_R11819

Type:

multiple initiation site

Name:

Atat1_1

Description:

alpha tubulin acetyltransferase 1

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	20	3,351,291 - 3,351,351	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1303066	AgrOrtholog
BioCyc Gene	G2FUF-4785	BioCyc
Ensembl Genes	ENSRNOG00000000809	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein	ENSRNOP00000001065.4	UniProtKB/TrEMBL
	ENSRNOP00000073934	ENTREZGENE
	ENSRNOP00000073934.2	UniProtKB/TrEMBL
	ENSRNOP00000074047	ENTREZGENE
	ENSRNOP00000074047.2	UniProtKB/TrEMBL
	ENSRNOP00000075030	ENTREZGENE
	ENSRNOP00000075030.2	UniProtKB/TrEMBL
	ENSRNOP00000088040	ENTREZGENE
	ENSRNOP00000088040.1	UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000001065	ENTREZGENE
	ENSRNOT00000001065.6	UniProtKB/TrEMBL
	ENSRNOT00000079654	ENTREZGENE
	ENSRNOT00000079654.2	UniProtKB/TrEMBL
	ENSRNOT00000080158	ENTREZGENE
	ENSRNOT00000080158.2	UniProtKB/TrEMBL
	ENSRNOT00000080419	ENTREZGENE
	ENSRNOT00000080419.2	UniProtKB/TrEMBL
	ENSRNOT00000086503	ENTREZGENE
	ENSRNOT00000086503.2	UniProtKB/TrEMBL
Gene3D-CATH	3.40.630.30	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	6.20.370.120	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro	Acyl_CoA_acyltransferase	UniProtKB/TrEMBL
	Atat	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	GNAT_ATAT	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	rno:361789	UniProtKB/Swiss-Prot
NCBI Gene	361789	ENTREZGENE
PANTHER	ALPHA-TUBULIN N-ACETYLTRANSFERASE 1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	PTHR12327	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam	Acetyltransf_16	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Atat1	PhenoGen
PROSITE	GNAT_ATAT	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP	SSF55729	UniProtKB/TrEMBL
UniProt	A0A0G2K6T3	ENTREZGENE, UniProtKB/TrEMBL
	A0A0G2K9K5_RAT	UniProtKB/TrEMBL
	A0A8I6A4A0	ENTREZGENE, UniProtKB/TrEMBL
	A0A8L2PZR1_RAT	UniProtKB/TrEMBL
	A0A8L2R8C1_RAT	UniProtKB/TrEMBL
	ATAT_RAT	UniProtKB/Swiss-Prot, ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2011-05-26	Atat1	alpha tubulin acetyltransferase 1	RGD1303066	similar to RIKEN cDNA 2610110G12	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-11-17	RGD1303066	similar to RIKEN cDNA 2610110G12	FLJ13158	hypothetical protein FLJ13158	Symbol and Name updated	1299863	APPROVED
2005-09-30	FLJ13158				Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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