Atat1 (alpha tubulin acetyltransferase 1) - Rat Genome Database

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Gene: Atat1 (alpha tubulin acetyltransferase 1) Rattus norvegicus
Analyze
Symbol: Atat1
Name: alpha tubulin acetyltransferase 1
RGD ID: 1303066
Description: Predicted to enable lysine N-acetyltransferase activity, acting on acetyl phosphate as donor and tubulin N-acetyltransferase activity. Predicted to be involved in alpha-tubulin acetylation. Predicted to act upstream of or within several processes, including dentate gyrus development; positive regulation of NLRP3 inflammasome complex assembly; and regulation of fat cell differentiation. Predicted to be located in Golgi apparatus; cytoskeleton; and cytosol. Orthologous to human ATAT1 (alpha tubulin acetyltransferase 1); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil; bisphenol A.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 3110080J08Rik; acetyltransferase MEC-17; acetyltransferase mec-17 homolog; alpha-TAT; alpha-TAT1; alpha-tubulin N-acetyltransferase; alpha-tubulin N-acetyltransferase 1; FLJ13158; hypothetical protein FLJ13158; hypothetical protein LOC361789; Mec17; RGD1303066; similar to RIKEN cDNA 2610110G12; TAT
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2202,844,595 - 2,857,809 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl202,844,616 - 2,861,964 (+)Ensembl
Rnor_6.0203,351,269 - 3,364,565 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl203,351,303 - 3,364,565 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0205,448,793 - 5,462,088 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4202,992,405 - 3,005,364 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1202,992,631 - 3,005,583 (+)NCBI
Celera20270,616 - 283,574 (+)NCBICelera
Cytogenetic Map20p12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

Additional References at PubMed
PMID:12477932   PMID:16751776   PMID:20829795   PMID:22972992   PMID:23071314   PMID:23126280   PMID:23502856   PMID:23720746   PMID:23748901   PMID:24906155   PMID:26700226   PMID:27314403  
PMID:28505206   PMID:33626373  


Genomics

Comparative Map Data
Atat1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2202,844,595 - 2,857,809 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl202,844,616 - 2,861,964 (+)Ensembl
Rnor_6.0203,351,269 - 3,364,565 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl203,351,303 - 3,364,565 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0205,448,793 - 5,462,088 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4202,992,405 - 3,005,364 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1202,992,631 - 3,005,583 (+)NCBI
Celera20270,616 - 283,574 (+)NCBICelera
Cytogenetic Map20p12NCBI
ATAT1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38630,626,874 - 30,646,821 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl630,626,842 - 30,646,823 (+)EnsemblGRCh38hg38GRCh38
GRCh37630,594,651 - 30,614,598 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36630,702,632 - 30,722,577 (+)NCBINCBI36hg18NCBI36
Build 34630,702,631 - 30,720,425NCBI
Celera632,192,731 - 32,212,715 (+)NCBI
Cytogenetic Map6p21.33NCBI
HuRef630,394,781 - 30,414,765 (+)NCBIHuRef
CHM1_1630,596,723 - 30,616,706 (+)NCBICHM1_1
Atat1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391736,208,487 - 36,220,971 (-)NCBIGRCm39mm39
GRCm39 Ensembl1736,208,487 - 36,220,967 (-)Ensembl
GRCm381735,897,595 - 35,910,086 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1735,897,595 - 35,910,075 (-)EnsemblGRCm38mm10GRCm38
MGSCv371736,034,540 - 36,047,013 (-)NCBIGRCm37mm9NCBIm37
MGSCv361735,507,905 - 35,518,098 (-)NCBImm8
Celera1739,406,855 - 39,419,330 (-)NCBICelera
Cytogenetic Map17B1NCBI
Atat1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_004955583643,575 - 652,393 (+)NCBIChiLan1.0ChiLan1.0
ATAT1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1631,238,771 - 31,261,795 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl631,238,778 - 31,261,611 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0630,368,847 - 30,391,595 (+)NCBIMhudiblu_PPA_v0panPan3
ATAT1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.112441,847 - 456,349 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl12441,895 - 456,152 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha12579,489 - 593,991 (+)NCBI
ROS_Cfam_1.012586,158 - 599,574 (+)NCBI
UMICH_Zoey_3.112442,543 - 457,251 (+)NCBI
UNSW_CanFamBas_1.012511,819 - 526,707 (+)NCBI
UU_Cfam_GSD_1.012581,863 - 595,374 (+)NCBI
Atat1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494633,935,469 - 33,954,419 (+)NCBI
SpeTri2.0NW_004936837300,765 - 319,742 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ATAT1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl723,166,304 - 23,185,458 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1723,173,138 - 23,185,463 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2726,895,036 - 26,907,375 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ATAT1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11741,807,405 - 41,830,670 (-)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl1741,807,291 - 41,830,000 (-)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604430,320,597 - 30,343,906 (+)NCBIVero_WHO_p1.0
Atat1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462475425,058,312 - 25,069,052 (-)NCBIHetGla_female_1.0hetGla2

Position Markers
BE117058  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2202,855,567 - 2,855,717 (+)MAPPERmRatBN7.2
Rnor_6.0203,362,236 - 3,362,385NCBIRnor6.0
Rnor_5.0205,459,759 - 5,459,908UniSTSRnor5.0
RGSC_v3.4203,003,338 - 3,003,487UniSTSRGSC3.4
Celera20281,548 - 281,697UniSTS
RH 3.4 Map51157.1UniSTS
Cytogenetic Map20p12UniSTS
RH128043  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2202,843,981 - 2,844,162 (+)MAPPERmRatBN7.2
Rnor_6.0203,350,651 - 3,350,831NCBIRnor6.0
Rnor_5.0205,448,174 - 5,448,354UniSTSRnor5.0
RGSC_v3.4202,991,753 - 2,991,933UniSTSRGSC3.4
Celera20269,964 - 270,144UniSTS
RH 3.4 Map2015.8UniSTS
Cytogenetic Map20p12UniSTS
AI548047  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2202,857,364 - 2,857,528 (+)MAPPERmRatBN7.2
Rnor_6.0203,364,336 - 3,364,499NCBIRnor6.0
Rnor_5.0205,461,859 - 5,462,022UniSTSRnor5.0
RGSC_v3.4203,005,135 - 3,005,298UniSTSRGSC3.4
Celera20283,345 - 283,508UniSTS
RH 3.4 Map2052.1UniSTS
Cytogenetic Map20p12UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
724519Bp144Blood pressure QTL 1440.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2013624629Rat
1354642Despr15Despair related QTL 150.0027locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)20124159021Rat
1600382Edcs3Endometrial carcinoma susceptibility QTL33.50.003uterus morphology trait (VT:0001120)percentage of study population developing endometrioid carcinoma during a period of time (CMO:0001759)20125159026Rat
2317851Alcrsp22Alcohol response QTL 223.20.05response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)20127339237Rat
1641893Alcrsp7Alcohol response QTL 7response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)20127339237Rat
8694189Bw153Body weight QTL 1533.130.001body mass (VT:0001259)body weight gain (CMO:0000420)20129191651Rat
9590275Scort15Serum corticosterone level QTL 153.480.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)20129191651Rat
7411650Foco23Food consumption QTL 2320.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)20129191651Rat
9590109Sffal8Serum free fatty acids level QTL 85.320.01blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)20129191651Rat
9589155Insul32Insulin level QTL 326.380.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)20129191651Rat
6893685Bw111Body weight QTL 1112.70.004body mass (VT:0001259)body weight (CMO:0000012)20132578807Rat
7411668Foco32Food consumption QTL 3280.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)20136600972Rat
9590252Scort12Serum corticosterone level QTL 1220.460.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)20136600972Rat
2305926Iddm37Insulin dependent diabetes mellitus QTL 376blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)20152784246527842Rat
2306850Pia40Pristane induced arthritis QTL 400.0001joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)2015279595304575Rat
1641915Colcr9Colorectal carcinoma resistance QTL 92.970.0024intestine integrity trait (VT:0010554)benign colorectal tumor number (CMO:0001795)20153065546530655Rat
1598816Memor12Memory QTL 122.4exploratory behavior trait (VT:0010471)average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)20260683647606836Rat
61448Ciaa1CIA Autoantibody QTL 1300.001blood autoantibody amount (VT:0003725)calculated serum anti-rat type 2 collagen autoantibody titer (CMO:0001281)2026463954597031Rat
61472Aia1Adjuvant induced arthritis QTL 1180.001joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)2026463954597031Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:22
Count of miRNA genes:22
Interacting mature miRNAs:22
Transcripts:ENSRNOT00000001065
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 20 4 4 2 4 66 20 33 1
Low 3 23 53 37 17 37 6 9 8 15 8 10 6
Below cutoff 2 2 2

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_212498 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006255950 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006255951 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017601673 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017601674 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017601675 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039098791 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039098792 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039098793 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039098794 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039098795 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039098796 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039098797 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039098798 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005497274 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005497275 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide BX883048 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH474118 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DQ608917 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JACYVU010000323 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000001065   ⟹   ENSRNOP00000001065
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl202,844,616 - 2,857,574 (+)Ensembl
Rnor_6.0 Ensembl203,351,303 - 3,364,565 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000001077   ⟹   ENSRNOP00000001077
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl202,844,616 - 2,861,964 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000078758
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl203,359,963 - 3,360,423 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000079253
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl203,351,317 - 3,359,172 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000079654   ⟹   ENSRNOP00000073934
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl202,844,622 - 2,857,577 (+)Ensembl
Rnor_6.0 Ensembl203,363,737 - 3,364,564 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000079738
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl203,351,899 - 3,360,095 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000080158
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl202,844,616 - 2,855,719 (+)Ensembl
Rnor_6.0 Ensembl203,351,305 - 3,362,430 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000080419   ⟹   ENSRNOP00000074047
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl202,844,634 - 2,857,586 (+)Ensembl
Rnor_6.0 Ensembl203,351,303 - 3,364,557 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000082342
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl203,363,639 - 3,364,012 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000082345
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl203,351,646 - 3,352,710 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000086216
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl203,360,990 - 3,361,703 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000086503   ⟹   ENSRNOP00000075030
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl202,844,634 - 2,857,586 (+)Ensembl
Rnor_6.0 Ensembl203,351,304 - 3,364,565 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000087295
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl203,363,676 - 3,364,565 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000089667
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl203,351,305 - 3,362,388 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000090225
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl203,363,852 - 3,364,565 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000091735
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl203,351,517 - 3,352,689 (+)Ensembl
RefSeq Acc Id: NM_212498   ⟹   NP_997663
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2202,844,634 - 2,857,594 (+)NCBI
Rnor_6.0203,351,303 - 3,364,565 (+)NCBI
Rnor_5.0205,448,793 - 5,462,088 (+)NCBI
RGSC_v3.4202,992,405 - 3,005,364 (+)RGD
Celera20270,616 - 283,574 (+)RGD
Sequence:
RefSeq Acc Id: XM_006255950   ⟹   XP_006256012
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2202,844,599 - 2,855,750 (+)NCBI
Rnor_6.0203,351,270 - 3,362,387 (+)NCBI
Rnor_5.0205,448,793 - 5,462,088 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006255951   ⟹   XP_006256013
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2202,844,599 - 2,855,750 (+)NCBI
Rnor_6.0203,351,270 - 3,362,387 (+)NCBI
Rnor_5.0205,448,793 - 5,462,088 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017601675   ⟹   XP_017457164
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2202,844,598 - 2,855,750 (+)NCBI
Rnor_6.0203,351,269 - 3,362,387 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039098791   ⟹   XP_038954719
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2202,844,596 - 2,857,594 (+)NCBI
RefSeq Acc Id: XM_039098792   ⟹   XP_038954720
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2202,844,596 - 2,857,579 (+)NCBI
RefSeq Acc Id: XM_039098793   ⟹   XP_038954721
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2202,844,596 - 2,857,579 (+)NCBI
RefSeq Acc Id: XM_039098794   ⟹   XP_038954722
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2202,844,596 - 2,857,809 (+)NCBI
RefSeq Acc Id: XM_039098795   ⟹   XP_038954723
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2202,844,596 - 2,857,809 (+)NCBI
RefSeq Acc Id: XM_039098796   ⟹   XP_038954724
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2202,844,599 - 2,857,594 (+)NCBI
RefSeq Acc Id: XM_039098797   ⟹   XP_038954725
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2202,844,599 - 2,857,579 (+)NCBI
RefSeq Acc Id: XM_039098798   ⟹   XP_038954726
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2202,844,599 - 2,856,928 (+)NCBI
RefSeq Acc Id: XR_005497274
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2202,844,595 - 2,854,073 (+)NCBI
RefSeq Acc Id: XR_005497275
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2202,844,599 - 2,854,073 (+)NCBI
Reference Sequences
RefSeq Acc Id: NP_997663   ⟸   NM_212498
- UniProtKB: Q6MG11 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006256012   ⟸   XM_006255950
- Peptide Label: isoform X9
- Sequence:
RefSeq Acc Id: XP_006256013   ⟸   XM_006255951
- Peptide Label: isoform X10
- Sequence:
RefSeq Acc Id: XP_017457164   ⟸   XM_017601675
- Peptide Label: isoform X7
- Sequence:
RefSeq Acc Id: ENSRNOP00000074047   ⟸   ENSRNOT00000080419
RefSeq Acc Id: ENSRNOP00000073934   ⟸   ENSRNOT00000079654
RefSeq Acc Id: ENSRNOP00000075030   ⟸   ENSRNOT00000086503
RefSeq Acc Id: ENSRNOP00000001065   ⟸   ENSRNOT00000001065
RefSeq Acc Id: XP_038954723   ⟸   XM_039098795
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038954722   ⟸   XM_039098794
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038954719   ⟸   XM_039098791
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038954721   ⟸   XM_039098793
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038954720   ⟸   XM_039098792
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038954724   ⟸   XM_039098796
- Peptide Label: isoform X6
RefSeq Acc Id: XP_038954725   ⟸   XM_039098797
- Peptide Label: isoform X8
RefSeq Acc Id: XP_038954726   ⟸   XM_039098798
- Peptide Label: isoform X11
RefSeq Acc Id: ENSRNOP00000001077   ⟸   ENSRNOT00000001077
Protein Domains
N-acetyltransferase

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q6MG11-F1-model_v2 AlphaFold Q6MG11 1-421 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13701299
Promoter ID:EPDNEW_R11819
Type:multiple initiation site
Name:Atat1_1
Description:alpha tubulin acetyltransferase 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0203,351,291 - 3,351,351EPDNEW

Strain Variation

Strain Sequence Variants (MRatBN7.2)
ACI/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN-Lx/CubMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BUF/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH2/CubMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH3/CubMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
DA/OlaHsd (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/DuCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE16/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE18/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GK/FarMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB10/IpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB2/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB20/IpcvMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB31/IpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB4/IpcvMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEW/Crl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF10A/StmMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF11/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1A/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1C/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF2B/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF3/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF4/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LH/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LL/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LN/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/NRrrcMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MR/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MWF/Hsd (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
PVG/Seac (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHR/OlalpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/A3NCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SR/JrHsd (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SS/JrHsdMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WAG/RijCrl (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WN/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
Damaging Variants


Assembly: Rnor_6.0

Chromosome Start Pos End Pos Reference Nucleotide Variant Nucleotide Variant Type Strain
20 3360752 3360753 G A snv LH/MavRrrc (RGD), LN/MavRrrc (RGD), LH/MavRrrcAek (2020), M520/N (2020), M520/NRrrcMcwi (2019), Buf/N (MCW), LEXF10A/StmMcwi (2020), BUF/N (2020), FXLE16/Stm (2020), LEXF4/Stm (2020), LE/Stm (2019), LN/MavRrrcAek (2020), LE/Stm (RGD)


Assembly: Rnor_5.0

Chromosome Start Pos End Pos Reference Nucleotide Variant Nucleotide Variant Type Strain
20 5458275 5458276 G A snv LH/MavRrrc (KNAW), LN/MavRrrc (KNAW), BUF/N (KNAW), LE/Stm (KyushuU), LE/Stm (SOLiD) (KNAW), M520/N (KNAW), LE/Stm (Illumina) (KNAW)


Assembly: RGSC_v3.4

Chromosome Start Pos End Pos Reference Nucleotide Variant Nucleotide Variant Type Strain
20 3001854 3001855 G A snv BUF/N (KNAW), LE/Stm (KNAW), LE/Stm (ICL), LCR/2Mco (UMich), LN/MavRrrc (ICL), HCR/2Mco (UMich), LH/MavRrrc (ICL)


Assembly: mRatBN7.2

Chromosome Start Pos End Pos Reference Nucleotide Variant Nucleotide Variant Type Strain
20 2854084 2854085 G A snv BUF/N (2020), FXLE16/Stm (2020), LEXF4/Stm (2020), LE/Stm (2019), M520/N (2020), LN/MavRrrcAek (2020), LEXF10A/StmMcwi (2020), M520/NRrrcMcwi (2019), LH/MavRrrcAek (2020)


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1303066 AgrOrtholog
BioCyc Gene G2FUF-4785 BioCyc
Ensembl Genes ENSRNOG00000000809 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000001065 UniProtKB/Swiss-Prot
  ENSRNOP00000073934 ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOP00000074047 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSRNOP00000075030 ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOP00000088040 ENTREZGENE
Ensembl Transcript ENSRNOT00000001065 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSRNOT00000079654 ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOT00000080158 ENTREZGENE
  ENSRNOT00000080419 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSRNOT00000086503 ENTREZGENE, UniProtKB/TrEMBL
InterPro Atat UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GNAT_ATAT UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:361789 UniProtKB/Swiss-Prot
NCBI Gene 361789 ENTREZGENE
PANTHER PTHR12327 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Acetyltransf_16 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Atat1 PhenoGen
PROSITE GNAT_ATAT UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0G2K6T3_RAT UniProtKB/TrEMBL
  A0A0G2K9K5_RAT UniProtKB/TrEMBL
  ATAT_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2011-05-26 Atat1  alpha tubulin acetyltransferase 1  RGD1303066  similar to RIKEN cDNA 2610110G12  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-11-17 RGD1303066  similar to RIKEN cDNA 2610110G12  FLJ13158  hypothetical protein FLJ13158  Symbol and Name updated 1299863 APPROVED
2005-09-30 FLJ13158        Symbol and Name status set to provisional 70820 PROVISIONAL