Sgpl1 (sphingosine-1-phosphate lyase 1)

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Gene: Sgpl1 (sphingosine-1-phosphate lyase 1) Rattus norvegicus

Analyze

Symbol:

Sgpl1

Name:

sphingosine-1-phosphate lyase 1

RGD ID:

628599

Description:

Predicted to have sphinganine-1-phosphate aldolase activity. Predicted to be involved in several processes, including animal organ development; cellular hormone metabolic process; and sphingolipid metabolic process. Predicted to localize to endoplasmic reticulum. Human ortholog(s) of this gene implicated in nephrotic syndrome type 14. Orthologous to human SGPL1 (sphingosine-1-phosphate lyase 1); PARTICIPATES IN Fabry disease pathway; Gaucher's disease pathway; Krabbe disease pathway; INTERACTS WITH 2,2',4,4'-Tetrabromodiphenyl ether; 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Also known as:

S1PL; SP-lyase 1; Spgl1; sphingosine phosphate lyase 1; sphingosine-1-phosphate aldolase; spl; SPL 1

RGD Orthologs

Human

Mouse

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	SGPL1 (sphingosine-1-phosphate lyase 1)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Sgpl1 (sphingosine phosphate lyase 1)	HGNC	Treefam, EggNOG, NCBI, OMA, HomoloGene, Inparanoid, Panther, OrthoDB, Ensembl
Chinchilla lanigera (long-tailed chinchilla):	Sgpl1 (sphingosine-1-phosphate lyase 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	SGPL1 (sphingosine-1-phosphate lyase 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	SGPL1 (sphingosine-1-phosphate lyase 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Sgpl1 (sphingosine-1-phosphate lyase 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	SGPL1 (sphingosine-1-phosphate lyase 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (African green monkey):	SGPL1 (sphingosine-1-phosphate lyase 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Sgpl1 (sphingosine-1-phosphate lyase 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	SGPL1 (sphingosine-1-phosphate lyase 1)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|TreeFam)
Mus musculus (house mouse):	Sgpl1 (sphingosine phosphate lyase 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|TreeFam)
Danio rerio (zebrafish):	sgpl1 (sphingosine-1-phosphate lyase 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|TreeFam)
Saccharomyces cerevisiae (baker's yeast):	DPL1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|TreeFam)
Drosophila melanogaster (fruit fly):	Sply	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|TreeFam)
Caenorhabditis elegans (roundworm):	spl-1	Alliance	DIOPT (InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|TreeFam)
Caenorhabditis elegans (roundworm):	spl-2	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|OMA\|OrthoFinder\|PANTHER\|PhylomeDB\|TreeFam)
Caenorhabditis elegans (roundworm):	spl-3	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PANTHER\|PhylomeDB)

Latest Assembly:

Rnor_6.0 - RGSC Genome Assembly v6.0

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	20	29,047,793 - 29,094,209 (-)	NCBI
Rnor_6.0 Ensembl	20	30,699,872 - 30,749,940 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_6.0	20	30,699,936 - 30,769,178 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	20	32,497,280 - 32,543,188 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	20	28,459,734 - 28,505,017 (-)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	20	28,473,533 - 28,518,817 (-)	NCBI
Celera	20	30,483,317 - 30,527,561 (-)	NCBI		Celera
Cytogenetic Map	20	q11	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

nephrotic syndrome type 14 (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dichloroethane (ISO)

1,2-dimethylhydrazine (ISO)

17beta-estradiol (ISO)

2,2',4,4'-Tetrabromodiphenyl ether (EXP)

2,3',4,4',5-Pentachlorobiphenyl (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,4-dinitrotoluene (EXP)

2,6-dinitrotoluene (EXP)

4,4'-diaminodiphenylmethane (ISO)

4-hydroxynon-2-enal (ISO)

aflatoxin B1 (ISO)

ammonium chloride (EXP)

benzo[a]pyrene (ISO)

bisphenol A (EXP)

carbon nanotube (ISO)

chromium(3+) trichloride (ISO)

cyproconazole (ISO)

diazinon (EXP)

dieldrin (EXP)

dioxygen (ISO)

divanadium pentaoxide (ISO)

dorsomorphin (ISO)

epoxiconazole (ISO)

ethanol (ISO)

fipronil (EXP)

gentamycin (EXP)

graphite (EXP)

oxaliplatin (EXP)

paracetamol (ISO)

perfluorononanoic acid (ISO)

phenobarbital (ISO)

propiconazole (ISO)

rotenone (ISO)

SB 431542 (ISO)

sodium dichromate (ISO)

sunitinib (ISO)

thimerosal (ISO)

topotecan (EXP)

triphenyl phosphate (EXP)

troglitazone (ISO)

valdecoxib (EXP)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

ameboidal-type cell migration (IBA)

androgen metabolic process (ISO)

apoptotic signaling pathway (ISO,ISS)

ceramide metabolic process (ISO,ISS)

estrogen metabolic process (ISO)

face morphogenesis (ISO)

fatty acid metabolic process (ISO,ISS)

female gonad development (ISO)

fibroblast migration (ISO)

hemopoiesis (ISO)

kidney development (ISO)

Leydig cell differentiation (ISO)

luteinization (ISO)

nitrogen compound metabolic process (ISO)

platelet-derived growth factor receptor signaling pathway (ISO)

post-embryonic development (ISO)

regulation of multicellular organism growth (ISO)

roof of mouth development (ISO)

skeletal system morphogenesis (ISO)

spermatogenesis (ISO)

sphingolipid catabolic process (IBA,ISO,ISS)

vasculogenesis (ISO)

Cellular Component

endoplasmic reticulum (IBA,ISO,ISS)

endoplasmic reticulum membrane (IEA)

integral component of membrane (IEA)

Molecular Function

carboxy-lyase activity (IEA)

protein binding (ISO)

pyridoxal phosphate binding (IEA)

sphinganine-1-phosphate aldolase activity (IBA,ISO,ISS)

Molecular Pathway Annotations Click to see Annotation Detail View

Fabry disease pathway (ISO)

Gaucher's disease pathway (ISO)

Krabbe disease pathway (ISO)

metachromatic leukodystrophy pathway (ISO)

sphingolipid metabolic pathway (IEA,ISO)

sphingosine 1-phosphate signaling pathway (ISO)

References

References - curated


1.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	MGD data from the GO Consortium
3.	Pipeline to import KEGG annotations from KEGG into RGD
4.	Pipeline to import Pathway Interaction Database annotations from NCI into RGD
5.	Pipeline to import SMPDB annotations from SMPDB into RGD
6.	RGD automated data pipeline
7.	RGD automated import pipeline for gene-chemical interactions
8.	Van Veldhoven PP and Mannaerts GP, J Biol Chem 1991 Jul 5;266(19):12502-7.

Additional References at PubMed

PMID:14570870	PMID:17143286	PMID:19056881	PMID:24809814	PMID:25630683	PMID:28165339	PMID:29070677

Genomics

Comparative Map Data

Sgpl1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	20	29,047,793 - 29,094,209 (-)	NCBI
Rnor_6.0 Ensembl	20	30,699,872 - 30,749,940 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_6.0	20	30,699,936 - 30,769,178 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	20	32,497,280 - 32,543,188 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	20	28,459,734 - 28,505,017 (-)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	20	28,473,533 - 28,518,817 (-)	NCBI
Celera	20	30,483,317 - 30,527,561 (-)	NCBI		Celera
Cytogenetic Map	20	q11	NCBI

SGPL1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38.p13 Ensembl	10	70,815,948 - 70,881,184 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh38	10	70,815,920 - 70,881,184 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh37	10	72,575,704 - 72,640,941 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
GRCh37	10	72,575,704 - 72,640,946 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	10	72,245,722 - 72,309,873 (+)	NCBI	NCBI36		hg18	NCBI36
Build 34	10	72,245,721 - 72,309,871	NCBI
Celera	10	65,857,672 - 65,923,231 (+)	NCBI
Cytogenetic Map	10	q22.1	NCBI
HuRef	10	66,569,390 - 66,634,948 (+)	NCBI		HuRef
CHM1_1	10	72,858,499 - 72,923,730 (+)	NCBI		CHM1_1

Sgpl1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	10	60,934,421 - 60,983,463 (-)	NCBI	GRCm39		mm39
GRCm38	10	61,098,642 - 61,147,684 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	10	61,098,642 - 61,147,703 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	10	60,561,390 - 60,610,413 (-)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	10	60,493,999 - 60,542,956 (-)	NCBI			mm8
Celera	10	62,199,269 - 62,248,215 (-)	NCBI		Celera
Cytogenetic Map	10	B4	NCBI
cM Map	10	32.14	NCBI

Sgpl1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955437	20,488,330 - 20,547,171 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955437	20,489,641 - 20,547,105 (-)	NCBI	ChiLan1.0	ChiLan1.0

SGPL1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	10	69,812,082 - 69,876,444 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	10	69,812,092 - 69,876,438 (+)	Ensembl	panpan1.1		panPan2
Mhudiblu_PPA_v0	10	67,286,349 - 67,351,574 (+)	NCBI	Mhudiblu_PPA_v0		panPan3

SGPL1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1 Ensembl	4	21,660,939 - 21,715,155 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
CanFam3.1	4	21,666,264 - 21,717,476 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1

Sgpl1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
SpeTri2.0	NW_004936521	7,850,370 - 7,899,998 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SGPL1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	14	73,723,800 - 73,781,830 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	14	73,696,902 - 73,781,830 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	14	79,572,301 - 79,628,480 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

SGPL1
(Chlorocebus sabaeus - African green monkey)

Vervet Assembly	Chr	Position (strand)	Source	Genome Browsers
Vervet Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	9	60,425,703 - 60,487,196 (-)	NCBI
ChlSab1.1 Ensembl	9	60,424,305 - 60,487,146 (-)	Ensembl

Sgpl1
(Heterocephalus glaber - naked mole-rat)

Molerat Assembly	Chr	Position (strand)	Source	Genome Browsers
Molerat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624754	4,844,472 - 4,889,006 (+)	NCBI

QTLs in Region (Rnor_6.0)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
6893685	Bw111	Body weight QTL 111	2.7	0.004	body mass (VT:0001259)	body weight (CMO:0000012)	20	1	33300419	Rat
9590252	Scort12	Serum corticosterone level QTL 12	20.46	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	20	1	37550487	Rat
7411668	Foco32	Food consumption QTL 32	8	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	20	1	37550487	Rat
2305926	Iddm37	Insulin dependent diabetes mellitus QTL 37	6		blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	20	2018654	47018654	Rat
1641915	Colcr9	Colorectal carcinoma resistance QTL 9	2.97	0.0024	intestine integrity trait (VT:0010554)	benign colorectal tumor number (CMO:0001795)	20	2999707	47999707	Rat
1598816	Memor12	Memory QTL 12	2.4		exploratory behavior trait (VT:0010471)	average horizontal distance in proximity to the target during voluntary locomotion in an experimental apparatus (CMO:0002674)	20	4108956	49108956	Rat
4889870	Pur30	Proteinuria QTL 30	19	0.005	total urine protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	20	8654341	30991290	Rat
9590092	Insglur9	Insulin/glucose ratio QTL 9	18.38	0.001	blood insulin amount (VT:0001560)	calculated plasma insulin level (CMO:0002170)	20	13834309	56205956	Rat
7411652	Foco24	Food consumption QTL 24		0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	20	13834309	56205956	Rat
2317880	Alcrsp25	Alcohol response QTL 25	2.3		response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	20	17827096	56205956	Rat
4889610	Pancm3	Pancreatic morphology QTL 3	3.75	0.001	pancreas mass (VT:0010144)	pancreas wet weight (CMO:0000626)	20	18872150	49108956	Rat
2303626	Vencon10	Ventilatory control QTL 10		0.001	respiration trait (VT:0001943)	respiration rate (CMO:0000289)	20	20858470	56205956	Rat
2303578	Gluco50	Glucose level QTL 50	2		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	20	26608843	56205956	Rat
2303587	Bw93	Body weight QTL 93	13		body mass (VT:0001259)	body weight (CMO:0000012)	20	26608843	56205956	Rat
2300188	Bmd68	Bone mineral density QTL 68	6.4	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	20	26608843	56205956	Rat
1331747	Hrtrt16	Heart rate QTL 16	3.163		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	20	26712323	56205956	Rat

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	34
Count of miRNA genes:	32
Interacting mature miRNAs:	34
Transcripts:	ENSRNOT00000065127
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium	3	30	45	29	19	29	1	1	74	35	36	11	1
Low		13	12	12		12	7	10			5		7
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_173116	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008772871	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008772872	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039098466	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AJ512838	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474016	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JACYVU010000324	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSRNOT00000065127 ⟹ ENSRNOP00000059089

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	20	30,702,005 - 30,749,940 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000084391 ⟹ ENSRNOP00000070983

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	20	30,699,872 - 30,748,784 (-)	Ensembl

RefSeq Acc Id:

NM_173116 ⟹ NP_775139

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	20	29,049,862 - 29,094,023 (-)	NCBI
Rnor_6.0	20	30,702,005 - 30,749,940 (-)	NCBI
Rnor_5.0	20	32,497,280 - 32,543,188 (-)	NCBI
RGSC_v3.4	20	28,459,734 - 28,505,017 (-)	RGD
Celera	20	30,483,317 - 30,527,561 (-)	RGD

Sequence:

show sequence

TCGCTTGCAGAACCGAGGCGCGTGAGGTGGGCGGCGGCCAGCTGAGCCCCTGCGAGGAAGAAGG
CGCGGGTCCACGGCTTGTGGAGACGCAGTAGCAGAGGAGCCCTGAGGAGCCATCTGCAGAGGAA
GATGCCGAGTACCGACCTTCTCAAGTTGAAGGACTTCGAGCCTTATTTGGAGATTTTGGAAGCA
TATTCCACAAAAGCCAAGAATTACGTGAATGGGTACTGCACCAAATACGAGCCCTGGCAGCTCA
TTGCGGGGAGTGTCCTGTGTACTCTGCTGGTAGTCTGGGTATATGAGCTTATCTTCCAGCCAGA
GAGTTTATGGTCTCGGTTTAAAAATAAATTATTTAGGCTTATAAGGAAGATGCCATTTATTGGA
CGTAAGATACAACAGCAGCTTACCAAAGCCAAGAAGGATCTTGTCAAGAACATGCCATTCCTGA
AGTTGGACAAAGATTATGTGAAAACCCTGCCTGCTCAGGGTCTGAGCACAGCTGAGGTTCTGGA
GAGACTCAAGGAGTACAGCTCCATGGATGTCTTCTGGCAAGAAGGGAAAGCCTCAGGAGCTGTG
TACAGTGGGGAGCCGAAGCTCACCGAGCTGCTGGTGCAGGCTTACGGAGAATTCACGTGGAGCA
ATCCACTGCACCCAGATATCTTCCCCGGACTACGGAAGTTAGAGGCAGAAATCGTGAGGATGAC
TTGCTCCCTCTTCAATGGGGGGCCAGACTCCTGTGGATGTGTGACTTCTGGGGGAACAGAAAGC
ATCCTAATGGCCTGCAAAGCATATCGGGACTTGGCCTTAGAGAAGGGGATCAAAACTCCAGAAA
TTGTGGCTCCTGAGAGTGCCCACGCCGCATTCGACAAAGCAGCTCATTATTTCGGAATGAAGAT
TGTACGCGTTGCGCAGAAAAAGAACATGGAGGTGGATGTGCGGGCAATGAAAAGAGCCATCTCC
AGGAACACAGCCATGCTGGTCTGTTCTGCCCCACAGTTTCCTCATGGTGTGATAGATCCTATCC
CCGAAGTGGCCAAGCTGGCTGTCAAATATAAAATCCCATTCCATGTGGATGCTTGTCTTGGGGG
CTTCCTCATTGTCTTCATGGAGAAAGCAGGGTACCCACTGGAGAAACCATTTGATTTCCGGGTG
AAAGGTGTGACCAGCATTTCAGCAGATACTCATAAGTACGGCTATGCTCCCAAAGGTTCATCAG
TGGTGATGTACTCTAACGAGAAGTACAGGAAGTACCAGTTCTTTGTTGATGCAGATTGGCAAGG
TGGCATCTACGCATCTCCAAGCATAGCTGGCTCACGGCCTGGTGGCATCATTGCAGCCTGTTGG
GCCGCCTTGATGCACTTTGGTGAGAACGGCTATGTTGAAGCTACCAAACAGATCATCAAAACTG
CTCGCTTCCTCAAGTCAGAACTGGAAAACATCAAAAACATCTTCATTTTGGGGGATCCTCAATT
GTCAGTTATTGCTCTGGGCTCCAACGATTTTGACATCTACCGACTATCTAATATGATGTCTGCT
AAGGGGTGGAATTTTAACTACTTGCAGTTCCCAAGAAGCATTCATTTCTGCATTACGTTAGTAC
ATACTCGGAAGCGAGTGGCAATCCAGTTCCTAAAGGATATCCGGGAATCGGTCACACAAATCAT
GAAGAATCCTAAAGCTAAGACCACAGGAATGGGTGCCATCTATGGCATGGCCCAGGCAACCATT
GACAGGAAGATGGTTGCAGAAATATCCTCCGTCTTCTTGGACAGCCTTTATAGTACAGACCCTG
TGACTCAGGGTAACCAGATGAACGGTTCTCCAAAGCCCCGCTGAACTTTGACCCTTGATAGATC
CATGGAACTTCAGGCCTTCAGAAGGTTCTTGGCATTTAGAACCCACCACACACAACTTGACATC
TGGACTGGCTCCTTAGAGCACAAATAGGATAAACCGTAAGATAGCTTCAGCCTCAGGACTCCTT
TGTCTCCTTTTGGGGCTTTTAGTTTGAAGACCCTGAAGGATCCCACTGC

hide sequence

RefSeq Acc Id:

XM_008772870 ⟹ XP_008771092

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	20	30,699,936 - 30,769,088 (-)	NCBI

Sequence:

show sequence

TGGGTAAGAAGACAGACATCCAGGACGCAGTAGCAGAGGAGCCCTGAGGAGCCATCTGCAGAGG
AAGATGCCGAGTACCGACCTTCTCAAGTTGAAGGACTTCGAGCCTTATTTGGAGATTTTGGAAG
CATATTCCACAAAAGCCAAGAATTACGTGAATGGGTACTGCACCAAATACGAGCCCTGGCAGCT
CATTGCGGGGAGTGTCCTGTGTACTCTGCTGGTAGTCTGGGTATATGAGCTTATCTTCCAGCCA
GAGAGTTTATGGTCTCGGTTTAAAAATAAATTATTTAGGCTTATAAGGAAGATGCCATTTATTG
GACGTAAGATACAACAGCAGCTTACCAAAGCCAAGAAGGATCTTGTCAAGAACATGCCATTCCT
GAAGTTGGACAAAGATTATGTGAAAACCCTGCCTGCTCAGGGTCTGAGCACAGCTGAGGTTCTG
GAGAGACTCAAGGAGTACAGCTCCATGGATGTCTTCTGGCAAGAAGGGAAAGCCTCAGGAGCTG
TGTACAGTGGGGAGCCGAAGCTCACCGAGCTGCTGGTGCAGGCTTACGGAGAATTCACGTGGAG
CAATCCACTGCACCCAGATATCTTCCCCGGACTACGGAAGTTAGAGGCAGAAATCGTGAGGATG
ACTTGCTCCCTCTTCAATGGGGGGCCAGACTCCTGTGGATGTGTGACTTCTGGGGGAACAGAAA
GCATCCTAATGGCCTGCAAAGCATATCGGGACTTGGCCTTAGAGAAGGGGATCAAAACTCCAGA
AATTGTGGCTCCTGAGAGTGCCCACGCCGCATTCGACAAAGCAGCTCATTATTTCGGAATGAAG
ATTGTACGCGTTGCGCAGAAAAAGAACATGGAGGTGGATGTGCGGGCAATGAAAAGAGCCATCT
CCAGGAACACAGCCATGCTGGTCTGTTCTGCCCCACAGTTTCCTCATGGTGTGATAGATCCTAT
CCCCGAAGTGGCCAAGCTGGCTGTCAAATATAAAATCCCATTCCATGTGGATGCTTGTCTTGGG
GGCTTCCTCATTGTCTTCATGGAGAAAGCAGGGTACCCACTGGAGAAACCATTTGATTTCCGGG
TGAAAGGTGTGACCAGCATTTCAGCAGATACTCATAAGTACGGCTATGCTCCCAAAGGTTCATC
AGTGGTGATGTACTCTAACGAGAAGTACAGGAAGTACCAGTTCTTTGTTGATGCAGATTGGCAA
GGTGGCATCTACGCATCTCCAAGCATAGCTGGCTCACGGCCTGGTGGCATCATTGCAGCCTGTT
GGGCCGCCTTGATGCACTTTGGTGAGAACGGCTATGTTGAAGCTACCAAACAGATCATCAAAAC
TGCTCGCTTCCTCAAGTCAGAACTGGAAAACATCAAAAACATCTTCATTTTGGGGGATCCTCAA
TTGTCAGTTATTGCTCTGGGCTCCAACGATTTTGACATCTACCGACTATCTAATATGATGTCTG
CTAAGGGGTGGAATTTTAACTACTTGCAGTTCCCAAGAAGCATTCATTTCTGCATTACGTTAGT
ACATACTCGGAAGCGAGTGGCAATCCAGTTCCTAAAGGATATCCGGGAATCGGTCACACAAATC
ATGAAGAATCCTAAAGCTAAGACCACAGGAATGGGTGCCATCTATGGCATGGCCCAGGCAACCA
TTGACAGGAAGATGGTTGCAGAAATATCCTCCGTCTTCTTGGACAGCCTTTATAGTACAGACCC
TGTGACTCAGGGTAACCAGATGAACGGTTCTCCAAAGCCCCGCTGAACTTTGACCCTTGATAGA
TCCATGGAACTTCAGGCCTTCAGAAGGTTCTTGGCATTTAGAACCCACCACACACAACTTGACA
TCTGGACTGGCTCCTTAGAGCACAAATAGGATAAACCGTAAGATAGCTTCAGCCTCAGGACTCC
TTTGTCTCCTTTTGGGGCTTTTAGTTTGAAGACCCTGAAGGATCCCACTGCATAATGAGTCTGC
CCTGGTTATTAATGTTGCCCTAGGAATTGTTTTAACCATATTTTCCTCTAACATCTTTAGCATC
ATCTTCACTTATGCGGCGGCCCTGACCTGTCCTGATTGCTTAGGGAAAATGTGAGATAGCAAGA
GGGTGTCTCAACGTTCTGGCTGTCAGGCAGGGGGCATTTATGTACTGTGTTCCCTGGGTGGGTG
CTAATCTGTCCCACTCGGGGAGATTTCAGCCTCTGCGTCAGGAGATGCTGCTTGTCTCTCAGGA
TCGCTCTCATTACAACTTGCTTTACTTTTCCAAGCACAAGTTGGCCAGGTTACTGGCCTCTCTT
TTTTTTTAATTACTGGAGTGTGTTCCCTTGACGGGGTTTGAAGTGCTCCTTTGTCTTGTGCACG
ACCATGGCTGCTGCCACCTTTGGAGATGCCTGTTGGCCGTGATGCTCACACTTGTGTGTTCTTA
TTACTGTAGGGTAGGAAATGAACGTGTTTTTCAGAGAAGCTTGGGCTTTCTGGCTATTGGCGCT
GCCTCGAGTCTGGAGTAGGTGTAGATCACACCTGAGCCCTCTCCTGGGCCAGAGAAGCCAAAGC
CAGCCCCTTCCCCATATTTTCTTGAACAGCAGCATAGTAAGCACCTAGGTCATGCACATGTGGG
CGGTGGTCTTCCCCTTCAACTTTGCCTTAAGCCTTCGTGTAATGAGAATCCAGTTTTATTGAAG
AAAACACTCCACAAGTGTCCTTGACTTCCCTCAGTGGGTGTGAAGACGTTTGGAGGACACTTGC
TCCATCAGTGTGTTCTCTGCCCCTTCCCCCCTTTTTTAAGCTTCCAAAGGTACGACGGCATTTT
AGCTCCAGGTACTGGACGTTCCTCAGGCCCTGCTAAAGGAAGCAGCATAGGACAAGAGGCATTT
TGGAGTAGAAAGGAATGGCTGTAGCCATTACACTTGGGGCCTGGGATTCTTTCGTGAGACTGAT
CGCCCAGGGTTATACAGGGACACAAGCGATCCCTGGCCAACTTCCCACTTGCTTTTCCCTTTTA
GGGATTGGGGGCTCTGAGGAAGACCGAGCCCTGTCCTGCTCTGATGACCATACCGTGTGCCTTT
CTACCTAGCAGCAAGTAATAAATTTAGTCCTCACCCAGGCCCTGGCAGAAATGGACCCCTATTT
GTGGGGTGTCTGTTTTGTAGGAAAGGACTTGGGACAAATCACCAGAAGCCATGCTCTGTTCCTT
CCCCTTCTCAGGGATTCCTGAGTATTTGCCTGAGTATGGCTGGCTGGGAGAGCCAAGCTGTCAG
ACTCTTCCTCACCTTCCTTGGGAAGTGGTCTTCAGCACTGTTCTGACTCCAAAGCTGTGACCAG
CTGGCTCATTGCAGGGCAAGCACATATGTCCACTTCCCTCCTGTGTGCTCTACAGTGCATTCTG
AGGCTCAGGGATGGTTGGTGTGACCCATGTCAGAGGGAGGCTGAGTTCCTGAGCTCACACACTT
TCCAGTGGTTAGAGCTATGCAGGACTCATCTCTGGGCCTACAGTGCATCATGCTGGAGAAGTCC
AGGAACCACCTAGCAGGCACCACTGGCTTGCCAGTGGCTAAAATGGAGACCCATCCTTTATAGT
CTCAGCAGAGCCGGGGACCAAGCCGTTCCCTTCCTTGTGGTAGCACTGGCATGGGGTGCTGGTG
TTTTTCAGAGGGACCTGCTGCAGCCATTTTAATTCATGATTAGGAACCTTAGTGCAACTTAAGA
CTTTCATTGTGTGTTTATGTGTGCATGCCATACCTAGCCGGTGACAGGGTGGGTAGGGTGTCTA
GTATCATGGTATCATGTGGCTTAGTAGGTGCCACAGTAACTTCTGCAAACATTGTACTGTCTTG
TTTCTGTATTAGAGGTAGCTAGTCATGTGGATATACTGACGTGTTCCTTTTAATATTACCAGTT
TTATACTTGGAAAATGGTACTTGCCTCTTTGAAATCTGTTTTGTCTCCTCTAATGTCCCCATCG
TCTCCAAGTCCTTTCCTAACTGCGGCAATAACTCTTCAGAAGCAATTGAATAATAAATGTCCCA
AATCGTAA

hide sequence

RefSeq Acc Id:

XM_008772871 ⟹ XP_008771093

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	20	29,047,793 - 29,094,209 (-)	NCBI
Rnor_6.0	20	30,699,936 - 30,749,948 (-)	NCBI

Sequence:

show sequence

CGAGTGAGTCGCTTGGCAGAACCGAGGCGCGTGAGACGCAGTAGCAGAGGAGCCCTGAGGAGCC
ATCTGCAGAGGAAGATGCCGAGTACCGACCTTCTCAAGTTGAAGGACTTCGAGCCTTATTTGGA
GATTTTGGAAGCATATTCCACAAAAGCCAAGAATTACGTGAATGGGTACTGCACCAAATACGAG
CCCTGGCAGCTCATTGCGGGGAGTGTCCTGTGTACTCTGCTGGTAGTCTGGGTATATGAGCTTA
TCTTCCAGCCAGAGAGTTTATGGTCTCGGTTTAAAAATAAATTATTTAGGCTTATAAGGAAGAT
GCCATTTATTGGACGTAAGATACAACAGCAGCTTACCAAAGCCAAGAAGGATCTTGTCAAGAAC
ATGCCATTCCTGAAGTTGGACAAAGATTATGTGAAAACCCTGCCTGCTCAGGGTCTGAGCACAG
CTGAGGTTCTGGAGAGACTCAAGGAGTACAGCTCCATGGATGTCTTCTGGCAAGAAGGGAAAGC
CTCAGGAGCTGTGTACAGTGGGGAGCCGAAGCTCACCGAGCTGCTGGTGCAGGCTTACGGAGAA
TTCACGTGGAGCAATCCACTGCACCCAGATATCTTCCCCGGACTACGGAAGTTAGAGGCAGAAA
TCGTGAGGATGACTTGCTCCCTCTTCAATGGGGGGCCAGACTCCTGTGGATGTGTGACTTCTGG
GGGAACAGAAAGCATCCTAATGGCCTGCAAAGCATATCGGGACTTGGCCTTAGAGAAGGGGATC
AAAACTCCAGAAATTGTGGCTCCTGAGAGTGCCCACGCCGCATTCGACAAAGCAGCTCATTATT
TCGGAATGAAGATTGTACGCGTTGCGCAGAAAAAGAACATGGAGGTGGATGTGCGGGCAATGAA
AAGAGCCATCTCCAGGAACACAGCCATGCTGGTCTGTTCTGCCCCACAGTTTCCTCATGGTGTG
ATAGATCCTATCCCCGAAGTGGCCAAGCTGGCTGTCAAATATAAAATCCCATTCCATGTGGATG
CTTGTCTTGGGGGCTTCCTCATTGTCTTCATGGAGAAAGCAGGGTACCCACTGGAGAAACCATT
TGATTTCCGGGTGAAAGGTGTGACCAGCATTTCAGCAGATACTCATAAGTACGGCTATGCTCCC
AAAGGTTCATCAGTGGTGATGTACTCTAACGAGAAGTACAGGAAGTACCAGTTCTTTGTTGATG
CAGATTGGCAAGGTGGCATCTACGCATCTCCAAGCATAGCTGGCTCACGGCCTGGTGGCATCAT
TGCAGCCTGTTGGGCCGCCTTGATGCACTTTGGTGAGAACGGCTATGTTGAAGCTACCAAACAG
ATCATCAAAACTGCTCGCTTCCTCAAGTCAGAACTGGAAAACATCAAAAACATCTTCATTTTGG
GGGATCCTCAATTGTCAGTTATTGCTCTGGGCTCCAACGATTTTGACATCTACCGACTATCTAA
TATGATGTCTGCTAAGGGGTGGAATTTTAACTACTTGCAGTTCCCAAGAAGCATTCATTTCTGC
ATTACGTTAGTACATACTCGGAAGCGAGTGGCAATCCAGTTCCTAAAGGATATCCGGGAATCGG
TCACACAAATCATGAAGAATCCTAAAGCTAAGACCACAGGAATGGGTGCCATCTATGGCATGGC
CCAGGCAACCATTGACAGGAAGATGGTTGCAGAAATATCCTCCGTCTTCTTGGACAGCCTTTAT
AGTACAGACCCTGTGACTCAGGGTAACCAGATGAACGGTTCTCCAAAGCCCCGCTGAACTTTGA
CCCTTGATAGATCCATGGAACTTCAGGCCTTCAGAAGGTTCTTGGCATTTAGAACCCACCACAC
ACAACTTGACATCTGGACTGGCTCCTTAGAGCACAAATAGGATAAACCGTAAGATAGCTTCAGC
CTCAGGACTCCTTTGTCTCCTTTTGGGGCTTTTAGTTTGAAGACCCTGAAGGATCCCACTGCAT
AATGAGTCTGCCCTGGTTATTAATGTTGCCCTAGGAATTGTTTTAACCATATTTTCCTCTAACA
TCTTTAGCATCATCTTCACTTATGCGGCGGCCCTGACCTGTCCTGATTGCTTAGGGAAAATGTG
AGATAGCAAGAGGGTGTCTCAACGTTCTGGCTGTCAGGCAGGGGGCATTTATGTACTGTGTTCC
CTGGGTGGGTGCTAATCTGTCCCACTCGGGGAGATTTCAGCCTCTGCGTCAGGAGATGCTGCTT
GTCTCTCAGGATCGCTCTCATTACAACTTGCTTTACTTTTCCAAGCACAAGTTGGCCAGGTTAC
TGGCCTCTCTTTTTTTTTAATTACTGGAGTGTGTTCCCTTGACGGGGTTTGAAGTGCTCCTTTG
TCTTGTGCACGACCATGGCTGCTGCCACCTTTGGAGATGCCTGTTGGCCGTGATGCTCACACTT
GTGTGTTCTTATTACTGTAGGGTAGGAAATGAACGTGTTTTTCAGAGAAGCTTGGGCTTTCTGG
CTATTGGCGCTGCCTCGAGTCTGGAGTAGGTGTAGATCACACCTGAGCCCTCTCCTGGGCCAGA
GAAGCCAAAGCCAGCCCCTTCCCCATATTTTCTTGAACAGCAGCATAGTAAGCACCTAGGTCAT
GCACATGTGGGCGGTGGTCTTCCCCTTCAACTTTGCCTTAAGCCTTCGTGTAATGAGAATCCAG
TTTTATTGAAGAAAACACTCCACAAGTGTCCTTGACTTCCCTCAGTGGGTGTGAAGACGTTTGG
AGGACACTTGCTCCATCAGTGTGTTCTCTGCCCCTTCCCCCCTTTTTTAAGCTTCCAAAGGTAC
GACGGCATTTTAGCTCCAGGTACTGGACGTTCCTCAGGCCCTGCTAAAGGAAGCAGCATAGGAC
AAGAGGCATTTTGGAGTAGAAAGGAATGGCTGTAGCCATTACACTTGGGGCCTGGGATTCTTTC
GTGAGACTGATCGCCCAGGGTTATACAGGGACACAAGCGATCCCTGGCCAACTTCCCACTTGCT
TTTCCCTTTTAGGGATTGGGGGCTCTGAGGAAGACCGAGCCCTGTCCTGCTCTGATGACCATAC
CGTGTGCCTTTCTACCTAGCAGCAAGTAATAAATTTAGTCCTCACCCAGGCCCTGGCAGAAATG
GACCCCTATTTGTGGGGTGTCTGTTTTGTAGGAAAGGACTTGGGACAAATCACCAGAAGCCATG
CTCTGTTCCTTCCCCTTCTCAGGGATTCCTGAGTATTTGCCTGAGTATGGCTGGCTGGGAGAGC
CAAGCTGTCAGACTCTTCCTCACCTTCCTTGGGAAGTGGTCTTCAGCACTGTTCTGACTCCAAA
GCTGTGACCAGCTGGCTCATTGCAGGGCAAGCACATATGTCCACTTCCCTCCTGTGTGCTCTAC
AGTGCATTCTGAGGCTCAGGGATGGTTGGTGTGACCCATGTCAGAGGGAGGCTGAGTTCCTGAG
CTCACACACTTTCCAGTGGTTAGAGCTATGCAGGACTCATCTCTGGGCCTACAGTGCATCATGC
TGGAGAAGTCCAGGAACCACCTAGCAGGCACCACTGGCTTGCCAGTGGCTAAAATGGAGACCCA
TCCTTTATAGTCTCAGCAGAGCCGGGGACCAAGCCGTTCCCTTCCTTGTGGTAGCACTGGCATG
GGGTGCTGGTGTTTTTCAGAGGGACCTGCTGCAGCCATTTTAATTCATGATTAGGAACCTTAGT
GCAACTTAAGACTTTCATTGTGTGTTTATGTGTGCATGCCATACCTAGCCGGTGACAGGGTGGG
TAGGGTGTCTAGTATCATGGTATCATGTGGCTTAGTAGGTGCCACAGTAACTTCTGCAAACATT
GTACTGTCTTGTTTCTGTATTAGAGGTAGCTAGTCATGTGGATATACTGACGTGTTCCTTTTAA
TATTACCAGTTTTATACTTGGAAAATGGTACTTGCCTCTTTGAAATCTGTTTTGTCTCCTCTAA
TGTCCCCATCGTCTCCAAGTCCTTTCCTAACTGCGGCAATAACTCTTCAGAAGCAATTGAATAA
TAAATGTCCCAAATCGTAA

hide sequence

RefSeq Acc Id:

XM_008772872 ⟹ XP_008771094

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	20	29,047,793 - 29,094,022 (-)	NCBI
Rnor_6.0	20	30,699,936 - 30,749,839 (-)	NCBI

Sequence:

show sequence

GCCGCGACGCAGTAGCAGAGGAGCCCTGAGGAGCCATCTGCAGAGGAAGATGCCGAGTACCGAC
CTTCTCAAGTTGAAGGACTTCGAGCCTTATTTGGAGATTTTGGAAGCATATTCCACAAAAGCCA
AGAATTACGTGAATGGGTACTGCACCAAATACGAGCCCTGGCAGCTCATTGCGGGGAGTGTCCT
GTGTACTCTGCTGGTAGTCTGGGTATATGAGCTTATCTTCCAGCCAGAGAGTTTATGGTCTCGG
TTTAAAAATAAATTATTTAGGCTTATAAGGAAGATGCCATTTATTGGACGTAAGATACAACAGC
AGCTTACCAAAGCCAAGAAGGATCTTGTCAAGAACATGCCATTCCTGAAGTTGGACAAAGATTA
TGTGAAAACCCTGCCTGCTCAGGGTCTGAGCACAGCTGAGGTTCTGGAGAGACTCAAGGAGTAC
AGCTCCATGGATGTCTTCTGGCAAGAAGGGAAAGCCTCAGGAGCTGTGTACAGTGGGGAGCCGA
AGCTCACCGAGCTGCTGGTGCAGGCTTACGGAGAATTCACGTGGAGCAATCCACTGCACCCAGA
TATCTTCCCCGGACTACGGAAGTTAGAGGCAGAAATCGTGAGGATGACTTGCTCCCTCTTCAAT
GGGGGGCCAGACTCCTGTGGATGTGTGACTTCTGGGGGAACAGAAAGCATCCTAATGGCCTGCA
AAGCATATCGGGACTTGGCCTTAGAGAAGGGGATCAAAACTCCAGAAATTGTGGCTCCTGAGAG
TGCCCACGCCGCATTCGACAAAGCAGCTCATTATTTCGGAATGAAGATTGTACGCGTTGCGCAG
AAAAAGAACATGGAGGTGGATGTGCGGGCAATGAAAAGAGCCATCTCCAGGAACACAGCCATGC
TGGTCTGTTCTGCCCCACAGTTTCCTCATGGTGTGATAGATCCTATCCCCGAAGTGGCCAAGCT
GGCTGTCAAATATAAAATCCCATTCCATGTGGATGCTTGTCTTGGGGGCTTCCTCATTGTCTTC
ATGGAGAAAGCAGGGTACCCACTGGAGAAACCATTTGATTTCCGGGTGAAAGGTGTGACCAGCA
TTTCAGCAGATACTCATAAGTACGGCTATGCTCCCAAAGGTTCATCAGTGGTGATGTACTCTAA
CGAGAAGTACAGGAAGTACCAGTTCTTTGTTGATGCAGATTGGCAAGGTGGCATCTACGCATCT
CCAAGCATAGCTGGCTCACGGCCTGGTGGCATCATTGCAGCCTGTTGGGCCGCCTTGATGCACT
TTGGTGAGAACGGCTATGTTGAAGCTACCAAACAGATCATCAAAACTGCTCGCTTCCTCAAGTC
AGAACTGGAAAACATCAAAAACATCTTCATTTTGGGGGATCCTCAATTGTCAGTTATTGCTCTG
GGCTCCAACGATTTTGACATCTACCGACTATCTAATATGATGTCTGCTAAGGGGTGGAATTTTA
ACTACTTGCAGTTCCCAAGAAGCATTCATTTCTGCATTACGTTAGTACATACTCGGAAGCGAGT
GGCAATCCAGTTCCTAAAGGATATCCGGGAATCGGTCACACAAATCATGAAGAATCCTAAAGCT
AAGACCACAGGAATGGGTGCCATCTATGGCATGGCCCAGGCAACCATTGACAGGAAGATGGTTG
CAGAAATATCCTCCGTCTTCTTGGACAGCCTTTATAGTACAGACCCTGTGACTCAGGGTAACCA
GATGAACGGTTCTCCAAAGCCCCGCTGAACTTTGACCCTTGATAGATCCATGGAACTTCAGGCC
TTCAGAAGGTTCTTGGCATTTAGAACCCACCACACACAACTTGACATCTGGACTGGCTCCTTAG
AGCACAAATAGGATAAACCGTAAGATAGCTTCAGCCTCAGGACTCCTTTGTCTCCTTTTGGGGC
TTTTAGTTTGAAGACCCTGAAGGATCCCACTGCATAATGAGTCTGCCCTGGTTATTAATGTTGC
CCTAGGAATTGTTTTAACCATATTTTCCTCTAACATCTTTAGCATCATCTTCACTTATGCGGCG
GCCCTGACCTGTCCTGATTGCTTAGGGAAAATGTGAGATAGCAAGAGGGTGTCTCAACGTTCTG
GCTGTCAGGCAGGGGGCATTTATGTACTGTGTTCCCTGGGTGGGTGCTAATCTGTCCCACTCGG
GGAGATTTCAGCCTCTGCGTCAGGAGATGCTGCTTGTCTCTCAGGATCGCTCTCATTACAACTT
GCTTTACTTTTCCAAGCACAAGTTGGCCAGGTTACTGGCCTCTCTTTTTTTTTAATTACTGGAG
TGTGTTCCCTTGACGGGGTTTGAAGTGCTCCTTTGTCTTGTGCACGACCATGGCTGCTGCCACC
TTTGGAGATGCCTGTTGGCCGTGATGCTCACACTTGTGTGTTCTTATTACTGTAGGGTAGGAAA
TGAACGTGTTTTTCAGAGAAGCTTGGGCTTTCTGGCTATTGGCGCTGCCTCGAGTCTGGAGTAG
GTGTAGATCACACCTGAGCCCTCTCCTGGGCCAGAGAAGCCAAAGCCAGCCCCTTCCCCATATT
TTCTTGAACAGCAGCATAGTAAGCACCTAGGTCATGCACATGTGGGCGGTGGTCTTCCCCTTCA
ACTTTGCCTTAAGCCTTCGTGTAATGAGAATCCAGTTTTATTGAAGAAAACACTCCACAAGTGT
CCTTGACTTCCCTCAGTGGGTGTGAAGACGTTTGGAGGACACTTGCTCCATCAGTGTGTTCTCT
GCCCCTTCCCCCCTTTTTTAAGCTTCCAAAGGTACGACGGCATTTTAGCTCCAGGTACTGGACG
TTCCTCAGGCCCTGCTAAAGGAAGCAGCATAGGACAAGAGGCATTTTGGAGTAGAAAGGAATGG
CTGTAGCCATTACACTTGGGGCCTGGGATTCTTTCGTGAGACTGATCGCCCAGGGTTATACAGG
GACACAAGCGATCCCTGGCCAACTTCCCACTTGCTTTTCCCTTTTAGGGATTGGGGGCTCTGAG
GAAGACCGAGCCCTGTCCTGCTCTGATGACCATACCGTGTGCCTTTCTACCTAGCAGCAAGTAA
TAAATTTAGTCCTCACCCAGGCCCTGGCAGAAATGGACCCCTATTTGTGGGGTGTCTGTTTTGT
AGGAAAGGACTTGGGACAAATCACCAGAAGCCATGCTCTGTTCCTTCCCCTTCTCAGGGATTCC
TGAGTATTTGCCTGAGTATGGCTGGCTGGGAGAGCCAAGCTGTCAGACTCTTCCTCACCTTCCT
TGGGAAGTGGTCTTCAGCACTGTTCTGACTCCAAAGCTGTGACCAGCTGGCTCATTGCAGGGCA
AGCACATATGTCCACTTCCCTCCTGTGTGCTCTACAGTGCATTCTGAGGCTCAGGGATGGTTGG
TGTGACCCATGTCAGAGGGAGGCTGAGTTCCTGAGCTCACACACTTTCCAGTGGTTAGAGCTAT
GCAGGACTCATCTCTGGGCCTACAGTGCATCATGCTGGAGAAGTCCAGGAACCACCTAGCAGGC
ACCACTGGCTTGCCAGTGGCTAAAATGGAGACCCATCCTTTATAGTCTCAGCAGAGCCGGGGAC
CAAGCCGTTCCCTTCCTTGTGGTAGCACTGGCATGGGGTGCTGGTGTTTTTCAGAGGGACCTGC
TGCAGCCATTTTAATTCATGATTAGGAACCTTAGTGCAACTTAAGACTTTCATTGTGTGTTTAT
GTGTGCATGCCATACCTAGCCGGTGACAGGGTGGGTAGGGTGTCTAGTATCATGGTATCATGTG
GCTTAGTAGGTGCCACAGTAACTTCTGCAAACATTGTACTGTCTTGTTTCTGTATTAGAGGTAG
CTAGTCATGTGGATATACTGACGTGTTCCTTTTAATATTACCAGTTTTATACTTGGAAAATGGT
ACTTGCCTCTTTGAAATCTGTTTTGTCTCCTCTAATGTCCCCATCGTCTCCAAGTCCTTTCCTA
ACTGCGGCAATAACTCTTCAGAAGCAATTGAATAATAAATGTCCCAAATCGTAA

hide sequence

RefSeq Acc Id:

XM_008772873 ⟹ XP_008771095

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	20	30,699,936 - 30,769,178 (-)	NCBI

Sequence:

show sequence

AACACATTGGCAACAGACACCACATCCACCCCTTGCATGGACCTGGCTGGCAGTGAGGAGAAGA
GCTTGTGTGTTATCAAAGGAGGATGCTGGACGCAGTAGCAGAGGAGCCCTGAGGAGCCATCTGC
AGAGGAAGATGCCGAGTACCGACCTTCTCAAGTTGAAGGACTTCGAGCCTTATTTGGAGATTTT
GGAAGCATATTCCACAAAAGCCAAGAATTACGTGAATGGGTACTGCACCAAATACGAGCCCTGG
CAGCTCATTGCGGGGAGTGTCCTGTGTACTCTGCTGGTAGTCTGGGTATATGAGCTTATCTTCC
AGCCAGAGAGTTTATGGTCTCGGTTTAAAAATAAATTATTTAGGCTTATAAGGAAGATGCCATT
TATTGGACGTAAGATACAACAGCAGCTTACCAAAGCCAAGAAGGATCTTGTCAAGAACATGCCA
TTCCTGAAGTTGGACAAAGATTATGTGAAAACCCTGCCTGCTCAGGGTCTGAGCACAGCTGAGG
TTCTGGAGAGACTCAAGGAGTACAGCTCCATGGATGTCTTCTGGCAAGAAGGGAAAGCCTCAGG
AGCTGTGTACAGTGGGGAGCCGAAGCTCACCGAGCTGCTGGTGCAGGCTTACGGAGAATTCACG
TGGAGCAATCCACTGCACCCAGATATCTTCCCCGGACTACGGAAGTTAGAGGCAGAAATCGTGA
GGATGACTTGCTCCCTCTTCAATGGGGGGCCAGACTCCTGTGGATGTGTGACTTCTGGGGGAAC
AGAAAGCATCCTAATGGCCTGCAAAGCATATCGGGACTTGGCCTTAGAGAAGGGGATCAAAACT
CCAGAAATTGTGGCTCCTGAGAGTGCCCACGCCGCATTCGACAAAGCAGCTCATTATTTCGGAA
TGAAGATTGTACGCGTTGCGCAGAAAAAGAACATGGAGGTGGATGTGCGGGCAATGAAAAGAGC
CATCTCCAGGAACACAGCCATGCTGGTCTGTTCTGCCCCACAGTTTCCTCATGGTGTGATAGAT
CCTATCCCCGAAGTGGCCAAGCTGGCTGTCAAATATAAAATCCCATTCCATGTGGATGCTTGTC
TTGGGGGCTTCCTCATTGTCTTCATGGAGAAAGCAGGGTACCCACTGGAGAAACCATTTGATTT
CCGGGTGAAAGGTGTGACCAGCATTTCAGCAGATACTCATAAGTACGGCTATGCTCCCAAAGGT
TCATCAGTGGTGATGTACTCTAACGAGAAGTACAGGAAGTACCAGTTCTTTGTTGATGCAGATT
GGCAAGGTGGCATCTACGCATCTCCAAGCATAGCTGGCTCACGGCCTGGTGGCATCATTGCAGC
CTGTTGGGCCGCCTTGATGCACTTTGGTGAGAACGGCTATGTTGAAGCTACCAAACAGATCATC
AAAACTGCTCGCTTCCTCAAGTCAGAACTGGAAAACATCAAAAACATCTTCATTTTGGGGGATC
CTCAATTGTCAGTTATTGCTCTGGGCTCCAACGATTTTGACATCTACCGACTATCTAATATGAT
GTCTGCTAAGGGGTGGAATTTTAACTACTTGCAGTTCCCAAGAAGCATTCATTTCTGCATTACG
TTAGTACATACTCGGAAGCGAGTGGCAATCCAGTTCCTAAAGGATATCCGGGAATCGGTCACAC
AAATCATGAAGAATCCTAAAGCTAAGACCACAGGAATGGGTGCCATCTATGGCATGGCCCAGGC
AACCATTGACAGGAAGATGGTTGCAGAAATATCCTCCGTCTTCTTGGACAGCCTTTATAGTACA
GACCCTGTGACTCAGGGTAACCAGATGAACGGTTCTCCAAAGCCCCGCTGAACTTTGACCCTTG
ATAGATCCATGGAACTTCAGGCCTTCAGAAGGTTCTTGGCATTTAGAACCCACCACACACAACT
TGACATCTGGACTGGCTCCTTAGAGCACAAATAGGATAAACCGTAAGATAGCTTCAGCCTCAGG
ACTCCTTTGTCTCCTTTTGGGGCTTTTAGTTTGAAGACCCTGAAGGATCCCACTGCATAATGAG
TCTGCCCTGGTTATTAATGTTGCCCTAGGAATTGTTTTAACCATATTTTCCTCTAACATCTTTA
GCATCATCTTCACTTATGCGGCGGCCCTGACCTGTCCTGATTGCTTAGGGAAAATGTGAGATAG
CAAGAGGGTGTCTCAACGTTCTGGCTGTCAGGCAGGGGGCATTTATGTACTGTGTTCCCTGGGT
GGGTGCTAATCTGTCCCACTCGGGGAGATTTCAGCCTCTGCGTCAGGAGATGCTGCTTGTCTCT
CAGGATCGCTCTCATTACAACTTGCTTTACTTTTCCAAGCACAAGTTGGCCAGGTTACTGGCCT
CTCTTTTTTTTTAATTACTGGAGTGTGTTCCCTTGACGGGGTTTGAAGTGCTCCTTTGTCTTGT
GCACGACCATGGCTGCTGCCACCTTTGGAGATGCCTGTTGGCCGTGATGCTCACACTTGTGTGT
TCTTATTACTGTAGGGTAGGAAATGAACGTGTTTTTCAGAGAAGCTTGGGCTTTCTGGCTATTG
GCGCTGCCTCGAGTCTGGAGTAGGTGTAGATCACACCTGAGCCCTCTCCTGGGCCAGAGAAGCC
AAAGCCAGCCCCTTCCCCATATTTTCTTGAACAGCAGCATAGTAAGCACCTAGGTCATGCACAT
GTGGGCGGTGGTCTTCCCCTTCAACTTTGCCTTAAGCCTTCGTGTAATGAGAATCCAGTTTTAT
TGAAGAAAACACTCCACAAGTGTCCTTGACTTCCCTCAGTGGGTGTGAAGACGTTTGGAGGACA
CTTGCTCCATCAGTGTGTTCTCTGCCCCTTCCCCCCTTTTTTAAGCTTCCAAAGGTACGACGGC
ATTTTAGCTCCAGGTACTGGACGTTCCTCAGGCCCTGCTAAAGGAAGCAGCATAGGACAAGAGG
CATTTTGGAGTAGAAAGGAATGGCTGTAGCCATTACACTTGGGGCCTGGGATTCTTTCGTGAGA
CTGATCGCCCAGGGTTATACAGGGACACAAGCGATCCCTGGCCAACTTCCCACTTGCTTTTCCC
TTTTAGGGATTGGGGGCTCTGAGGAAGACCGAGCCCTGTCCTGCTCTGATGACCATACCGTGTG
CCTTTCTACCTAGCAGCAAGTAATAAATTTAGTCCTCACCCAGGCCCTGGCAGAAATGGACCCC
TATTTGTGGGGTGTCTGTTTTGTAGGAAAGGACTTGGGACAAATCACCAGAAGCCATGCTCTGT
TCCTTCCCCTTCTCAGGGATTCCTGAGTATTTGCCTGAGTATGGCTGGCTGGGAGAGCCAAGCT
GTCAGACTCTTCCTCACCTTCCTTGGGAAGTGGTCTTCAGCACTGTTCTGACTCCAAAGCTGTG
ACCAGCTGGCTCATTGCAGGGCAAGCACATATGTCCACTTCCCTCCTGTGTGCTCTACAGTGCA
TTCTGAGGCTCAGGGATGGTTGGTGTGACCCATGTCAGAGGGAGGCTGAGTTCCTGAGCTCACA
CACTTTCCAGTGGTTAGAGCTATGCAGGACTCATCTCTGGGCCTACAGTGCATCATGCTGGAGA
AGTCCAGGAACCACCTAGCAGGCACCACTGGCTTGCCAGTGGCTAAAATGGAGACCCATCCTTT
ATAGTCTCAGCAGAGCCGGGGACCAAGCCGTTCCCTTCCTTGTGGTAGCACTGGCATGGGGTGC
TGGTGTTTTTCAGAGGGACCTGCTGCAGCCATTTTAATTCATGATTAGGAACCTTAGTGCAACT
TAAGACTTTCATTGTGTGTTTATGTGTGCATGCCATACCTAGCCGGTGACAGGGTGGGTAGGGT
GTCTAGTATCATGGTATCATGTGGCTTAGTAGGTGCCACAGTAACTTCTGCAAACATTGTACTG
TCTTGTTTCTGTATTAGAGGTAGCTAGTCATGTGGATATACTGACGTGTTCCTTTTAATATTAC
CAGTTTTATACTTGGAAAATGGTACTTGCCTCTTTGAAATCTGTTTTGTCTCCTCTAATGTCCC
CATCGTCTCCAAGTCCTTTCCTAACTGCGGCAATAACTCTTCAGAAGCAATTGAATAATAAATG
TCCCAAATCGTAA

hide sequence

RefSeq Acc Id:

XM_039098466 ⟹ XP_038954394

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	20	29,047,793 - 29,094,119 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_775139	(Get FASTA)	NCBI Sequence Viewer
	XP_008771093	(Get FASTA)	NCBI Sequence Viewer
	XP_008771094	(Get FASTA)	NCBI Sequence Viewer
	XP_038954394	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	CAD55407	(Get FASTA)	NCBI Sequence Viewer
	EDL93035	(Get FASTA)	NCBI Sequence Viewer
	EDL93036	(Get FASTA)	NCBI Sequence Viewer
	Q8CHN6	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:

NP_775139 ⟸ NM_173116

- UniProtKB:

Q8CHN6 (UniProtKB/Swiss-Prot)

- Sequence:

show sequence

MPSTDLLKLKDFEPYLEILEAYSTKAKNYVNGYCTKYEPWQLIAGSVLCTLLVVWVYELIFQPE
SLWSRFKNKLFRLIRKMPFIGRKIQQQLTKAKKDLVKNMPFLKLDKDYVKTLPAQGLSTAEVLE
RLKEYSSMDVFWQEGKASGAVYSGEPKLTELLVQAYGEFTWSNPLHPDIFPGLRKLEAEIVRMT
CSLFNGGPDSCGCVTSGGTESILMACKAYRDLALEKGIKTPEIVAPESAHAAFDKAAHYFGMKI
VRVAQKKNMEVDVRAMKRAISRNTAMLVCSAPQFPHGVIDPIPEVAKLAVKYKIPFHVDACLGG
FLIVFMEKAGYPLEKPFDFRVKGVTSISADTHKYGYAPKGSSVVMYSNEKYRKYQFFVDADWQG
GIYASPSIAGSRPGGIIAACWAALMHFGENGYVEATKQIIKTARFLKSELENIKNIFILGDPQL
SVIALGSNDFDIYRLSNMMSAKGWNFNYLQFPRSIHFCITLVHTRKRVAIQFLKDIRESVTQIM
KNPKAKTTGMGAIYGMAQATIDRKMVAEISSVFLDSLYSTDPVTQGNQMNGSPKPR

hide sequence

RefSeq Acc Id:

XP_008771095 ⟸ XM_008772873

- Peptide Label:

isoform X1

- Sequence:

show sequence

MPSTDLLKLKDFEPYLEILEAYSTKAKNYVNGYCTKYEPWQLIAGSVLCTLLVVWVYELIFQPE
SLWSRFKNKLFRLIRKMPFIGRKIQQQLTKAKKDLVKNMPFLKLDKDYVKTLPAQGLSTAEVLE
RLKEYSSMDVFWQEGKASGAVYSGEPKLTELLVQAYGEFTWSNPLHPDIFPGLRKLEAEIVRMT
CSLFNGGPDSCGCVTSGGTESILMACKAYRDLALEKGIKTPEIVAPESAHAAFDKAAHYFGMKI
VRVAQKKNMEVDVRAMKRAISRNTAMLVCSAPQFPHGVIDPIPEVAKLAVKYKIPFHVDACLGG
FLIVFMEKAGYPLEKPFDFRVKGVTSISADTHKYGYAPKGSSVVMYSNEKYRKYQFFVDADWQG
GIYASPSIAGSRPGGIIAACWAALMHFGENGYVEATKQIIKTARFLKSELENIKNIFILGDPQL
SVIALGSNDFDIYRLSNMMSAKGWNFNYLQFPRSIHFCITLVHTRKRVAIQFLKDIRESVTQIM
KNPKAKTTGMGAIYGMAQATIDRKMVAEISSVFLDSLYSTDPVTQGNQMNGSPKPR

hide sequence

RefSeq Acc Id:

XP_008771092 ⟸ XM_008772870

- Peptide Label:

isoform X1

- Sequence:

show sequence

MPSTDLLKLKDFEPYLEILEAYSTKAKNYVNGYCTKYEPWQLIAGSVLCTLLVVWVYELIFQPE
SLWSRFKNKLFRLIRKMPFIGRKIQQQLTKAKKDLVKNMPFLKLDKDYVKTLPAQGLSTAEVLE
RLKEYSSMDVFWQEGKASGAVYSGEPKLTELLVQAYGEFTWSNPLHPDIFPGLRKLEAEIVRMT
CSLFNGGPDSCGCVTSGGTESILMACKAYRDLALEKGIKTPEIVAPESAHAAFDKAAHYFGMKI
VRVAQKKNMEVDVRAMKRAISRNTAMLVCSAPQFPHGVIDPIPEVAKLAVKYKIPFHVDACLGG
FLIVFMEKAGYPLEKPFDFRVKGVTSISADTHKYGYAPKGSSVVMYSNEKYRKYQFFVDADWQG
GIYASPSIAGSRPGGIIAACWAALMHFGENGYVEATKQIIKTARFLKSELENIKNIFILGDPQL
SVIALGSNDFDIYRLSNMMSAKGWNFNYLQFPRSIHFCITLVHTRKRVAIQFLKDIRESVTQIM
KNPKAKTTGMGAIYGMAQATIDRKMVAEISSVFLDSLYSTDPVTQGNQMNGSPKPR

hide sequence

RefSeq Acc Id:

XP_008771093 ⟸ XM_008772871

- Peptide Label:

isoform X1

- Sequence:

show sequence

MPSTDLLKLKDFEPYLEILEAYSTKAKNYVNGYCTKYEPWQLIAGSVLCTLLVVWVYELIFQPE
SLWSRFKNKLFRLIRKMPFIGRKIQQQLTKAKKDLVKNMPFLKLDKDYVKTLPAQGLSTAEVLE
RLKEYSSMDVFWQEGKASGAVYSGEPKLTELLVQAYGEFTWSNPLHPDIFPGLRKLEAEIVRMT
CSLFNGGPDSCGCVTSGGTESILMACKAYRDLALEKGIKTPEIVAPESAHAAFDKAAHYFGMKI
VRVAQKKNMEVDVRAMKRAISRNTAMLVCSAPQFPHGVIDPIPEVAKLAVKYKIPFHVDACLGG
FLIVFMEKAGYPLEKPFDFRVKGVTSISADTHKYGYAPKGSSVVMYSNEKYRKYQFFVDADWQG
GIYASPSIAGSRPGGIIAACWAALMHFGENGYVEATKQIIKTARFLKSELENIKNIFILGDPQL
SVIALGSNDFDIYRLSNMMSAKGWNFNYLQFPRSIHFCITLVHTRKRVAIQFLKDIRESVTQIM
KNPKAKTTGMGAIYGMAQATIDRKMVAEISSVFLDSLYSTDPVTQGNQMNGSPKPR

hide sequence

RefSeq Acc Id:	XP_008771094 ⟸ XM_008772872
- Peptide Label:	isoform X2
- UniProtKB:	Q8CHN6 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MPSTDLLKLKDFEPYLEILEAYSTKAKNYVNGYCTKYEPWQLIAGSVLCTLLVVWVYELIFQPE SLWSRFKNKLFRLIRKMPFIGRKIQQQLTKAKKDLVKNMPFLKLDKDYVKTLPAQGLSTAEVLE RLKEYSSMDVFWQEGKASGAVYSGEPKLTELLVQAYGEFTWSNPLHPDIFPGLRKLEAEIVRMT CSLFNGGPDSCGCVTSGGTESILMACKAYRDLALEKGIKTPEIVAPESAHAAFDKAAHYFGMKI VRVAQKKNMEVDVRAMKRAISRNTAMLVCSAPQFPHGVIDPIPEVAKLAVKYKIPFHVDACLGG FLIVFMEKAGYPLEKPFDFRVKGVTSISADTHKYGYAPKGSSVVMYSNEKYRKYQFFVDADWQG GIYASPSIAGSRPGGIIAACWAALMHFGENGYVEATKQIIKTARFLKSELENIKNIFILGDPQL SVIALGSNDFDIYRLSNMMSAKGWNFNYLQFPRSIHFCITLVHTRKRVAIQFLKDIRESVTQIM KNPKAKTTGMGAIYGMAQATIDRKMVAEISSVFLDSLYSTDPVTQGNQMNGSPKPR hide sequence

RefSeq Acc Id:

ENSRNOP00000059089 ⟸ ENSRNOT00000065127

RefSeq Acc Id:

ENSRNOP00000070983 ⟸ ENSRNOT00000084391

RefSeq Acc Id:	XP_038954394 ⟸ XM_039098466
- Peptide Label:	isoform X2

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13701600

Promoter ID:

EPDNEW_R12123

Type:

multiple initiation site

Name:

Sgpl1_1

Description:

sphingosine-1-phosphate lyase 1

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	20	30,749,961 - 30,750,021	EPDNEW

Strain Variation

Strain Sequence Variants (Rnor 6.0)

ACI/EurMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

ACI/EurMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

ACI/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

BBDP/Wor (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

BN/SsN (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Buf/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

COP/CrCrl (MCW & UW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob) University of Wisconsin (Dr. James Shull)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Charles River Laboratories
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)

F344/NCrl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

F344/NRrrc (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

FHH/EurMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

FHH/EurMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

FHL/EurMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

FHL/EurMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

GH/OmrMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

GK/Ox (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LE/Stm (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LEW/Crl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LEW/NCrlBR (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LH/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LL/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LN/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

M520/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

MHS/Gib (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

MNS/Gib (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

MR/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

SBH/Ygl (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	SBH/Ygl sequenced by MCW

SBH/Ygl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SBN/Ygl (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	SBN/Ygl sequenced by MCW

SBN/Ygl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SHR/NHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SHRSP/Gcrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SR/JrHsd (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Harlan Laboratories
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

SR/JrHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SS/Jr (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SS/JrHsdMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

SS/JrHsdMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WAG/Rij (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/Gcrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

WKY/NCrl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/NHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WN/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:628599	AgrOrtholog
Ensembl Genes	ENSRNOG00000000565	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Protein	ENSRNOP00000059089	ENTREZGENE, UniProtKB/Swiss-Prot
	ENSRNOP00000070983	ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000065127	ENTREZGENE, UniProtKB/Swiss-Prot
	ENSRNOT00000084391	UniProtKB/Swiss-Prot
Gene3D-CATH	3.40.640.10	UniProtKB/Swiss-Prot
	3.90.1150.10	UniProtKB/Swiss-Prot
InterPro	PyrdxlP-dep_de-COase	UniProtKB/Swiss-Prot
	PyrdxlP-dep_Trfase	UniProtKB/Swiss-Prot
	PyrdxlP-dep_Trfase_dom1	UniProtKB/Swiss-Prot
	PyrdxlP-dep_Trfase_major	UniProtKB/Swiss-Prot
KEGG Report	rno:286896	UniProtKB/Swiss-Prot
NCBI Gene	286896	ENTREZGENE
Pfam	Pyridoxal_deC	UniProtKB/Swiss-Prot
PhenoGen	Sgpl1	PhenoGen
Superfamily-SCOP	SSF53383	UniProtKB/Swiss-Prot
UniProt	Q8CHN6	ENTREZGENE, UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-11-17	Sgpl1	sphingosine-1-phosphate lyase 1	Sgpl1	sphingosine phosphate lyase 1	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2004-12-17	Sgpl1	sphingosine phosphate lyase 1	Spgl1	sphingosine-1-phosphate lyase 1	Symbol and Name updated	1303942	APPROVED
2003-02-27	Spgl1	sphingosine-1-phosphate lyase 1			Symbol and Name status set to provisional	70820	PROVISIONAL

RGD Curation Notes

Note Type	Note	Reference
gene_cellular_localization	localized to the microsomal fraction	727205

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - OMIM

Imported Annotations - SMPDB

Imported Annotations - KEGG (archival)

Imported Annotations - PID (archival)