RT1-O3-ps (RT1 class I, locus O3, pseudogene) - Rat Genome Database

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Gene: RT1-O3-ps (RT1 class I, locus O3, pseudogene) Rattus norvegicus
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Symbol: RT1-O3-ps
Name: RT1 class I, locus O3, pseudogene
RGD ID: 1595732
Description:
Type: pseudo
RefSeq Status: INFERRED
Previously known as: RT1 class I gene RT1-O3; RT1 class I gene RT1-O3, pseudogene 3; RT1-O3
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8202,629,285 - 2,631,481 (-)NCBIGRCr8
mRatBN7.2202,624,465 - 2,626,661 (-)NCBImRatBN7.2mRatBN7.2
RGSC_v3.4202,776,707 - 2,778,901 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Cytogenetic Map20p12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


PMID:15060004  



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Variants in RT1-O3-ps
33 total Variants

1 to 10 of 18 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
2306850Pia40Pristane induced arthritis QTL 400.0001joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)2015279595304575Rat
1641915Colcr9Colorectal carcinoma resistance QTL 92.970.0024intestine integrity trait (VT:0010554)benign colorectal tumor number (CMO:0001795)20153065546530655Rat
7387283Uae44Urinary albumin excretion QTL 440.1712urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)20126123605Rat
7411668Foco32Food consumption QTL 3280.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)20136600972Rat
2305926Iddm37Insulin dependent diabetes mellitus QTL 376blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)20152784246527842Rat
1354642Despr15Despair related QTL 150.0027locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)20124159021Rat
1600382Edcs3Endometrial carcinoma susceptibility QTL33.50.003uterus morphology trait (VT:0001120)percentage of study population developing endometrioid carcinoma during a period of time (CMO:0001759)20125159026Rat
8694189Bw153Body weight QTL 1533.130.001body mass (VT:0001259)body weight gain (CMO:0000420)20129191651Rat
724519Bp144Blood pressure QTL 1440.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2013624629Rat
9590109Sffal8Serum free fatty acids level QTL 85.320.01blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)20129191651Rat

1 to 10 of 18 rows





RefSeq Transcripts NG_004529 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide BX883048 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000020 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles



Database
Acc Id
Source(s)
BioCyc Gene G2FUF-4824 BioCyc
NCBI Gene 414985 ENTREZGENE
PhenoGen RT1-O3-ps PhenoGen


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2009-09-15 RT1-O3-ps  RT1 class I, locus O3, pseudogene  RT1-O3  RT1 class I gene RT1-O3, pseudogene 3  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2009-09-14 RT1-O3  RT1 class I gene RT1-O3, pseudogene 3  RT1-O3  RT1 class I gene RT1-O3  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-11-20 RT1-O3  RT1 class I gene RT1-O3      Symbol and Name status set to provisional 70820 PROVISIONAL