Cox5bl1 (cytochrome c oxidase subunit 5B like 1) - Rat Genome Database

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Gene: Cox5bl1 (cytochrome c oxidase subunit 5B like 1) Rattus norvegicus
Analyze
Symbol: Cox5bl1
Name: cytochrome c oxidase subunit 5B like 1
RGD ID: 9199911
Description: Predicted to enable metal ion binding activity. Predicted to be part of mitochondrial respiratory chain complex IV.
Type: protein-coding
RefSeq Status: MODEL
Previously known as: cytochrome c oxidase subunit 5B, mitochondrial; cytochrome c oxidase subunit 5B, mitochondrial pseudogene; cytochrome c oxidase subunit 5B, mitochondrial-like; LOC103694426
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82028,503,112 - 28,503,481 (-)NCBIGRCr8
mRatBN7.22027,960,230 - 27,962,862 (-)NCBImRatBN7.2mRatBN7.2
Rnor_6.02029,577,469 - 29,577,874 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Celera2029,401,485 - 29,401,893 (-)NCBICelera
Cytogenetic Map20q11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

Genomics

Variants

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Variants in Cox5bl1
22 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2303587Bw93Body weight QTL 9313body mass (VT:0001259)body weight (CMO:0000012)202510672254435887Rat
4889610Pancm3Pancreatic morphology QTL 33.750.001pancreas mass (VT:0010144)pancreas wet weight (CMO:0000626)201761783247606836Rat
1641915Colcr9Colorectal carcinoma resistance QTL 92.970.0024intestine integrity trait (VT:0010554)benign colorectal tumor number (CMO:0001795)20153065546530655Rat
4889870Pur30Proteinuria QTL 30190.005urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)20804241029322208Rat
2305926Iddm37Insulin dependent diabetes mellitus QTL 376blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)20152784246527842Rat
7411668Foco32Food consumption QTL 3280.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)20136600972Rat
2303626Vencon10Ventilatory control QTL 100.001respiration trait (VT:0001943)respiration rate (CMO:0000289)201919072154435887Rat
8694189Bw153Body weight QTL 1533.130.001body mass (VT:0001259)body weight gain (CMO:0000420)20129191651Rat
9590109Sffal8Serum free fatty acids level QTL 85.320.01blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)20129191651Rat
9590275Scort15Serum corticosterone level QTL 153.480.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)20129191651Rat
9589155Insul32Insulin level QTL 326.380.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)20129191651Rat
7411650Foco23Food consumption QTL 2320.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)20129191651Rat
7411652Foco24Food consumption QTL 240.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)201175751554435887Rat
1331747Hrtrt16Heart rate QTL 163.163heart pumping trait (VT:2000009)heart rate (CMO:0000002)202520973454435887Rat
1598816Memor12Memory QTL 122.4exploratory behavior trait (VT:0010471)average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)20260683647606836Rat
2303578Gluco50Glucose level QTL 502blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)202510672254435887Rat
2317880Alcrsp25Alcohol response QTL 252.3response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)201769755054435887Rat
6893685Bw111Body weight QTL 1112.70.004body mass (VT:0001259)body weight (CMO:0000012)20132578807Rat
9590252Scort12Serum corticosterone level QTL 1220.460.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)20136600972Rat
9590092Insglur9Insulin/glucose ratio QTL 918.380.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)201175751554435887Rat
2300188Bmd68Bone mineral density QTL 686.40.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)202510672254435887Rat


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_039099368 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000020 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: XM_039099368   ⟹   XP_038955296
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82028,503,112 - 28,503,481 (-)NCBI
mRatBN7.22027,960,230 - 27,962,862 (-)NCBI
Protein Sequences
Protein RefSeqs XP_038955296 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000000700.3
RefSeq Acc Id: XP_038955296   ⟸   XM_039099368
- UniProtKB: F1LTG5 (UniProtKB/TrEMBL)

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-3748 BioCyc
Ensembl Genes ENSRNOG00000000574 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000000700.4 UniProtKB/TrEMBL
Gene3D-CATH Cytochrome c oxidase, subunit Vb UniProtKB/TrEMBL
InterPro Cyt_c_oxidase_su5b UniProtKB/TrEMBL
  Cyt_c_oxidase_su5b_sf UniProtKB/TrEMBL
NCBI Gene LOC103694426 ENTREZGENE
PANTHER CYTOCHROME C OXIDASE SUBUNIT 5B, MITOCHONDRIAL UniProtKB/TrEMBL
  CYTOCHROME C OXIDASE SUBUNIT 5B, MITOCHONDRIAL UniProtKB/TrEMBL
Pfam COX5B UniProtKB/TrEMBL
PhenoGen Cox5bl1 PhenoGen
PROSITE COX5B_2 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000000574 RatGTEx
Superfamily-SCOP Rubredoxin-like UniProtKB/TrEMBL
UniProt F1LTG5 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-09-19 Cox5bl1  cytochrome c oxidase subunit 5B like 1  LOC103694426  cytochrome c oxidase subunit 5B, mitochondrial pseudogene  Symbol and Name Changed 1299863 APPROVED
2014-08-25 LOC103694426  cytochrome c oxidase subunit 5B, mitochondrial pseudogene      Symbol and Name status set to provisional 70820 PROVISIONAL