Submit Data |  Help |  Video Tutorials |  News |  Publications |  FTP Download |  REST API |  Citing RGD |  Contact   
Gene: Hmga1 (high mobility group AT-hook 1) Rattus norvegicus
Analyze
Symbol: Hmga1
Name: high mobility group AT-hook 1
RGD ID: 628699
Description: Predicted to have several functions, including DNA binding activity; signaling receptor binding activity; and transcription regulator activity. Predicted to be involved in several processes, including oncogene-induced cell senescence; positive regulation of cellular senescence; and regulation of transcription, DNA-templated. Predicted to localize to RNA polymerase II transcription regulator complex; nucleus; and senescence-associated heterochromatin focus. Human ortholog(s) of this gene implicated in type 2 diabetes mellitus. Orthologous to human HMGA1 (high mobility group AT-hook 1); PARTICIPATES IN interleukin-4 signaling pathway; INTERACTS WITH (+)-schisandrin B; 2-amino-2-deoxy-D-glucopyranose; acetamide.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: high mobility group AT-hook protein 1; high mobility group protein A1; high mobility group protein HMG-I/HMG-Y; HMG-I(Y); Hmgi; Hmgiy; hypothetical protein LOC689053; LOC689053
Orthologs:
Homo sapiens (human) : HMGA1 (high mobility group AT-hook 1)  HGNC  Alliance
Mus musculus (house mouse) : Hmga1 (high mobility group AT-hook 1)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Hmga1 (high mobility group AT-hook 1)
Pan paniscus (bonobo/pygmy chimpanzee) : HMGA1 (high mobility group AT-hook 1)
Canis lupus familiaris (dog) : HMGA1 (high mobility group AT-hook 1)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Hmga1 (high mobility group AT-hook 1)
Sus scrofa (pig) : HMGA1 (high mobility group AT-hook 1)
Chlorocebus sabaeus (African green monkey) : HMGA1 (high mobility group AT-hook 1)
Heterocephalus glaber (naked mole-rat) : Hmga1 (high mobility group AT-hook 1)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.0207,132,501 - 7,140,155 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl207,136,007 - 7,138,980 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0209,334,866 - 9,342,510 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4205,769,052 - 5,772,269 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1205,769,278 - 5,772,496 (+)NCBI
Celera207,177,471 - 7,180,533 (+)NCBICelera
Cytogenetic Map20p12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
Molecular Pathway Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Expression

RNA-SEQ Expression

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome

Strain Variation

Strain Sequence Variants (Rnor 6.0)

Additional Information

External Database Links
Nomenclature History
 
More on Hmga1
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

RGD Object Information
RGD ID: 628699
Created: 2003-02-27
Species: Rattus norvegicus
Last Modified: 2020-08-20
Status: ACTIVE



NHLBI Logo

RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.