Hmga1 (high mobility group AT-hook 1)

Gene: Hmga1 (high mobility group AT-hook 1) Chinchilla lanigera

Analyze

Symbol:

Hmga1

Name:

high mobility group AT-hook 1

RGD ID:

8846512

Description:

ENCODES a protein that exhibits 5'-deoxyribose-5-phosphate lyase activity (ortholog); chromatin binding (ortholog); cis-regulatory region sequence-specific DNA binding (ortholog); INVOLVED IN autophagy (ortholog); B cell differentiation (ortholog); base-excision repair (ortholog); PARTICIPATES IN interleukin-4 signaling pathway; ASSOCIATED WITH genetic disease (ortholog); hyperglycemia (ortholog); Insulin Resistance (ortholog); FOUND IN cytoplasm (ortholog); male germ cell nucleus (ortholog); mitochondrion (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

high mobility group protein HMG-I/HMG-Y

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

ChiLan1.0 - Chinchilla ChiLan1.0 Assembly

Position:

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955437	2,478,414 - 2,486,809 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955437	2,478,414 - 2,486,809 (+)	NCBI	ChiLan1.0	ChiLan1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

genetic disease (ISO)

hyperglycemia (ISO)

Insulin Resistance (ISO)

leiomyosarcoma (ISO)

Metabolic Syndrome (ISO)

proteasome-associated autoinflammatory syndrome 1 (ISO)

type 2 diabetes mellitus (ISO)

Uterine Neoplasms (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

autophagy (ISO)

B cell differentiation (ISO)

base-excision repair (ISO)

cell population proliferation (ISO)

chromatin organization (ISO)

erythrocyte differentiation (ISO)

gene expression (ISO)

glucose homeostasis (ISO)

heart development (ISO)

inflammatory cell apoptotic process (ISO)

inflammatory response (ISO)

insulin receptor signaling pathway (ISO)

insulin secretion (ISO)

lung morphogenesis (ISO)

lymphoid progenitor cell differentiation (ISO)

multicellular organism growth (ISO)

negative regulation of cell population proliferation (ISO)

negative regulation of DNA-templated transcription (ISO)

negative regulation of transcription by RNA polymerase II (ISO)

neurogenesis (ISO)

oncogene-induced cell senescence (ISO)

peroxisome proliferator activated receptor signaling pathway (ISO)

positive regulation of DNA-templated transcription (ISO)

positive regulation of transcription by RNA polymerase II (ISO)

regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction (ISO)

respiratory system process (ISO)

response to cAMP (ISO)

response to glucagon (ISO)

response to glucose (ISO)

response to insulin (ISO)

response to wounding (ISO)

spermatogenesis (ISO)

T cell differentiation (ISO)

thyroid gland development (ISO)

Cellular Component

cytoplasm (ISO)

male germ cell nucleus (ISO)

mitochondrion (ISO)

nucleus (ISO)

RNA polymerase II transcription regulator complex (ISO)

senescence-associated heterochromatin focus (ISO)

SUMO ligase complex (ISO)

Molecular Function

5'-deoxyribose-5-phosphate lyase activity (ISO)

chromatin binding (ISO)

cis-regulatory region sequence-specific DNA binding (ISO)

D-loop DNA binding (ISO)

DNA binding (ISO)

DNA binding, bending (ISO)

DNA-(apurinic or apyrimidinic site) endonuclease activity (ISO)

DNA-binding transcription activator activity, RNA polymerase II-specific (ISO)

enzyme binding (ISO)

minor groove of adenine-thymine-rich DNA binding (ISO)

molecular adaptor activity (ISO)

molecular function activator activity (ISO)

nuclear receptor coactivator activity (ISO)

nuclear retinoic acid receptor binding (ISO)

nuclear retinoid X receptor binding (ISO)

peroxisome proliferator activated receptor binding (ISO)

protein binding (ISO)

RNA binding (ISO)

RNA polymerase II cis-regulatory region sequence-specific DNA binding (ISO)

RNA polymerase II core promoter sequence-specific DNA binding (ISO)

transcription coactivator activity (ISO)

transcription coregulator binding (ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

interleukin-4 signaling pathway (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Transitive Annotation Pipeline	Automated assignment of GO, PW and RDO ISO annotations across species
2.	OMIM Disease Annotation Pipeline	OMIM Disease Annotation Pipeline

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

Hmga1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955437	2,478,414 - 2,486,809 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955437	2,478,414 - 2,486,809 (+)	NCBI	ChiLan1.0	ChiLan1.0

HMGA1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	6	34,236,873 - 34,246,231 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	6	34,236,873 - 34,246,231 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	6	34,204,650 - 34,214,008 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	6	34,312,628 - 34,321,986 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	6	34,314,545 - 34,321,986	NCBI
Celera	6	35,758,945 - 35,768,381 (+)	NCBI		Celera
Cytogenetic Map	6	p21.31	NCBI
HuRef	6	33,927,318 - 33,936,673 (+)	NCBI		HuRef
CHM1_1	6	34,207,231 - 34,216,597 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	6	34,060,576 - 34,069,936 (+)	NCBI		T2T-CHM13v2.0

Hmga1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	17	27,774,798 - 27,782,649 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	17	27,775,471 - 27,782,648 (+)	Ensembl		GRCm39 Ensembl
GRCm38	17	27,556,574 - 27,563,672 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	17	27,556,497 - 27,563,674 (+)	Ensembl	GRCm38		mm10	GRCm38
GRCm38.p6 Ensembl	11	120,762,794 - 120,764,419 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	17	27,693,519 - 27,700,617 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	17	27,284,171 - 27,291,260 (+)	NCBI		MGSCv36	mm8
Celera	17	28,108,639 - 28,115,776 (+)	NCBI		Celera
Cytogenetic Map	17	A3.3	NCBI
cM Map	17	14.5	NCBI

Hmga1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	20	5,612,902 - 5,620,596 (+)	NCBI		GRCr8
mRatBN7.2	20	5,611,088 - 5,618,755 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	20	5,611,694 - 5,618,752 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	20	6,327,117 - 6,330,067 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	20	5,688,869 - 5,691,819 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	20	6,169,005 - 6,171,956 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	20	7,132,501 - 7,140,155 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	20	7,136,007 - 7,138,980 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	20	9,334,866 - 9,342,510 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	20	5,769,052 - 5,772,269 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	20	5,769,278 - 5,772,496 (+)	NCBI
Celera	20	7,177,471 - 7,180,533 (+)	NCBI		Celera
Cytogenetic Map	20	p12	NCBI

HMGA1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	5	48,712,783 - 48,722,294 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	6	44,580,061 - 44,589,567 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	6	33,807,171 - 33,816,603 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	6	34,914,923 - 34,920,482 (+)	NCBI	panpan1.1	PanPan1.1	panPan2

HMGA1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	12	3,528,818 - 3,538,533 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	12	3,533,102 - 3,538,533 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	12	3,544,725 - 3,554,094 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	12	3,865,251 - 3,874,712 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	12	3,865,303 - 3,888,352 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	12	3,527,697 - 3,537,024 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	12	3,609,068 - 3,618,412 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	12	3,707,513 - 3,716,880 (+)	NCBI		UU_Cfam_GSD_1.0

Hmga1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404946	39,156,880 - 39,164,376 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936476	24,795,877 - 24,801,567 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936476	24,795,854 - 24,803,138 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

HMGA1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	7	30,320,410 - 30,329,408 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	7	30,320,090 - 30,329,413 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	7	34,981,570 - 34,990,089 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3
Pig Cytomap	7	q11	NCBI

HMGA1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	17	37,848,110 - 37,857,835 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	17	37,849,412 - 37,853,880 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666044	34,150,889 - 34,160,977 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Hmga1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624754	22,892,226 - 22,898,807 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624754	22,888,052 - 22,900,685 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_013517084	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013517085	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013517086	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AGCD01034270	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AGCD01034271	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GBDI01001510	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSCLAT00000015360 ⟹ ENSCLAP00000015200

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0 Ensembl	NW_004955437	2,478,414 - 2,486,809 (+)	Ensembl

RefSeq Acc Id:

ENSCLAT00000015361 ⟹ ENSCLAP00000015201

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0 Ensembl	NW_004955437	2,479,724 - 2,486,809 (+)	Ensembl

RefSeq Acc Id:

XM_013517084 ⟹ XP_013372538

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955437	2,479,724 - 2,486,809 (+)	NCBI

Sequence:

show sequence

GGCGCGGGTTCGCGGGCTCCGGGGCGCCCGCTGCCCGCCGCGCCAACTTGCTGTGTGACCTTGG
GCCCCGCCGCGGGCTTCTCTGGGCCGCTTCTCTTTTTAAATAATGGGGCCGTGCGCGTCTTTGC
TCTCCTGAGGTCATTCCTGCGGAGTTGCGTCTCGCCGAGGGCCCCGCCGTGCGCGCGGCGTGGG
GAGGCGGGCTGAGGCCTACCGGGCTCCCTCCGGCCGCAGGGCGTGGGGTCGGGCCCGGAGCGGC
CCCTCGCGGGCCGGGCCTCGCTGATAGCCAGAAACAGCATCCCAGTGGCGCTCCACCTGCCCTA
GAGAAGGAAGATGAGCGAGTCGAGCTCGAAGTCCAGCCAGCCCCTGGCTTCCAAGCAGGAGAAG
GACGGCACTGAGAAGCGAGGCCGGGGCAGGCCACGCAAGCAGCCCCCAGTGAGTCCGGTGAGTC
CCGGGACGGCGCTGGTAGGGAGCCAGAAGGAGCCCAGTGAAGTGCCAACACCCAAGAGACCTCG
GGGCCGACCAAAGGGGAGCAAAAACAAGGGTGCTGCCAAGATCCGGAAAACCACCACGGCTCCT
GGGAGGAAACCACGGGGCAGACCCAAAAAACTGGAGAAGGAGGAAGAGGAGGGCATCTCGCAGG
AGTCTTCGGAGGAGGAGCAGTGACCGCGCCGCGCCGCCTGCCCCTCCCCGGAGGAGCAGCTTCC
TTCTGGGACTGGACAGCTTGGCTCTGCTCCCGCCCCGCCCCGCCCCAGGCCTGTTGTCACCCCC
GCCCCTCCCCACACTACACAGCACACCAGCCGCGCGGGCCCTGTGGCCGGAGCAGCGCCTTCGG
GCTCGTCCCCAGCAGCCCCTGCCCACGCACACGCGCCCTCCAGGACAAGGCTAACCCCACTTAG
CCGCTCCCCGCGTCCCTGCACCCACCTGCCTGGGGTCACTGCTCTCTGGGCCCTCGAGTTCCTC
CCTGCTCCCTCTGGCTCTCCCTCTAGGGGCCTGGGAGGGCTCCCCTGGCCTTAAGGGGCCCCGG
CCCCGCCTCGCTCTGACACGCCCACCTCACTGCTGCAGCAGCCATCAGGCCAGTGGGGGCTCGG
CCCGCCAAATGCCCCAGCCAGTCTCAGCGGCAGGGCTCGCCCACCTGTTCCTCCCCCAGCCTTC
CTAGTCCACCCCAGGTTGGACGCCCCCCTGGGGTACAGGAAGGAGCAAGAGCCGGAGGCCCCGC
CCTCCATGCCACAGGCAAGATGAGAGCAGCTGGCACCCACCTGCTCAGGTGAGGCCCAGGTCCC
CTGTGGCAGCCGCCCGAGGCCAGGCTTGCGTCCACCCTCCTGCTTCCACCGCGGCTGCTGGCCC
GCGGGGCGCTGGTACCCGAGCTGCCCGCCCTTCTGCTCCCCACCCCCAGGGTTCTGGTTCCATC
CTTTCCTCTGTTCACAAACTACCTCTGGACAGTTGTGTTGGTTTTTGTTCAACGTTTCACTCTT
AGACATTTGTCGTTGCTGCTGCCATCAGCGCCAGACGTTCATCCTCATTGCCTCCCGTTCTGCC
CTGTTCCCTCCCCAAGACGGGGGCTGGGGCGCCCAGGCTGGGTGCAGAGCACCCCAGTCCCAGG
GAAGGTGGGGCGTTGCCCCTAGGATGCTGCCACAGAGTGAGGAGGGGCCATGTCGACCATGGAA
GGGTGTAGGGGCCACCAGCTCCCCCTGTTCTGTTGGGGAGGGTGGCCATTATTTGTCCCAGCCT
GGGGCTCCCCCTCTGGTTTCCTATTTGCAGTTACTTGAATAAAAAAATATCCTTTTCTGGA

hide sequence

RefSeq Acc Id:

XM_013517085 ⟹ XP_013372539

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955437	2,479,700 - 2,486,809 (+)	NCBI

Sequence:

show sequence

TCCGAGCCGGCCCTGCCGCATCCCAGTGGCGCTCCACCTGCCCTAGAGAAGGAAGATGAGCGAG
TCGAGCTCGAAGTCCAGCCAGCCCCTGGCTTCCAAGCAGGAGAAGGACGGCACTGAGAAGCGAG
GCCGGGGCAGGCCACGCAAGCAGCCCCCAGTGAGTCCGGTGAGTCCCGGGACGGCGCTGGTAGG
GAGCCAGAAGGAGCCCAGTGAAGTGCCAACACCCAAGAGACCTCGGGGCCGACCAAAGGGGAGC
AAAAACAAGGGTGCTGCCAAGATCCGGAAAACCACCACGGCTCCTGGGAGGAAACCACGGGGCA
GACCCAAAAAACTGGAGAAGGAGGAAGAGGAGGGCATCTCGCAGGAGTCTTCGGAGGAGGAGCA
GTGACCGCGCCGCGCCGCCTGCCCCTCCCCGGAGGAGCAGCTTCCTTCTGGGACTGGACAGCTT
GGCTCTGCTCCCGCCCCGCCCCGCCCCAGGCCTGTTGTCACCCCCGCCCCTCCCCACACTACAC
AGCACACCAGCCGCGCGGGCCCTGTGGCCGGAGCAGCGCCTTCGGGCTCGTCCCCAGCAGCCCC
TGCCCACGCACACGCGCCCTCCAGGACAAGGCTAACCCCACTTAGCCGCTCCCCGCGTCCCTGC
ACCCACCTGCCTGGGGTCACTGCTCTCTGGGCCCTCGAGTTCCTCCCTGCTCCCTCTGGCTCTC
CCTCTAGGGGCCTGGGAGGGCTCCCCTGGCCTTAAGGGGCCCCGGCCCCGCCTCGCTCTGACAC
GCCCACCTCACTGCTGCAGCAGCCATCAGGCCAGTGGGGGCTCGGCCCGCCAAATGCCCCAGCC
AGTCTCAGCGGCAGGGCTCGCCCACCTGTTCCTCCCCCAGCCTTCCTAGTCCACCCCAGGTTGG
ACGCCCCCCTGGGGTACAGGAAGGAGCAAGAGCCGGAGGCCCCGCCCTCCATGCCACAGGCAAG
ATGAGAGCAGCTGGCACCCACCTGCTCAGGTGAGGCCCAGGTCCCCTGTGGCAGCCGCCCGAGG
CCAGGCTTGCGTCCACCCTCCTGCTTCCACCGCGGCTGCTGGCCCGCGGGGCGCTGGTACCCGA
GCTGCCCGCCCTTCTGCTCCCCACCCCCAGGGTTCTGGTTCCATCCTTTCCTCTGTTCACAAAC
TACCTCTGGACAGTTGTGTTGGTTTTTGTTCAACGTTTCACTCTTAGACATTTGTCGTTGCTGC
TGCCATCAGCGCCAGACGTTCATCCTCATTGCCTCCCGTTCTGCCCTGTTCCCTCCCCAAGACG
GGGGCTGGGGCGCCCAGGCTGGGTGCAGAGCACCCCAGTCCCAGGGAAGGTGGGGCGTTGCCCC
TAGGATGCTGCCACAGAGTGAGGAGGGGCCATGTCGACCATGGAAGGGTGTAGGGGCCACCAGC
TCCCCCTGTTCTGTTGGGGAGGGTGGCCATTATTTGTCCCAGCCTGGGGCTCCCCCTCTGGTTT
CCTATTTGCAGTTACTTGAATAAAAAAATATCCTTTTCTGGA

hide sequence

RefSeq Acc Id:

XM_013517086 ⟹ XP_013372540

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955437	2,478,414 - 2,486,809 (+)	NCBI

Sequence:

show sequence

GCGGGCCCGTCCCCCCTGCCCCTGGGTCGCTCTTTTTAAGCTCCCCTGAGCCGGGGCTGCGCTC
CTCTAATTGGGACTCCGAGCCGGGGCTATTTCTGGCGCTGGCGCTTCTCCAAGAAGGCCATCCC
AGTGGCGCTCCACCTGCCCTAGAGAAGGAAGATGAGCGAGTCGAGCTCGAAGTCCAGCCAGCCC
CTGGCTTCCAAGCAGGAGAAGGACGGCACTGAGAAGCGAGGCCGGGGCAGGCCACGCAAGCAGC
CCCCAGTGAGTCCGAAGGAGCCCAGTGAAGTGCCAACACCCAAGAGACCTCGGGGCCGACCAAA
GGGGAGCAAAAACAAGGGTGCTGCCAAGATCCGGAAAACCACCACGGCTCCTGGGAGGAAACCA
CGGGGCAGACCCAAAAAACTGGAGAAGGAGGAAGAGGAGGGCATCTCGCAGGAGTCTTCGGAGG
AGGAGCAGTGACCGCGCCGCGCCGCCTGCCCCTCCCCGGAGGAGCAGCTTCCTTCTGGGACTGG
ACAGCTTGGCTCTGCTCCCGCCCCGCCCCGCCCCAGGCCTGTTGTCACCCCCGCCCCTCCCCAC
ACTACACAGCACACCAGCCGCGCGGGCCCTGTGGCCGGAGCAGCGCCTTCGGGCTCGTCCCCAG
CAGCCCCTGCCCACGCACACGCGCCCTCCAGGACAAGGCTAACCCCACTTAGCCGCTCCCCGCG
TCCCTGCACCCACCTGCCTGGGGTCACTGCTCTCTGGGCCCTCGAGTTCCTCCCTGCTCCCTCT
GGCTCTCCCTCTAGGGGCCTGGGAGGGCTCCCCTGGCCTTAAGGGGCCCCGGCCCCGCCTCGCT
CTGACACGCCCACCTCACTGCTGCAGCAGCCATCAGGCCAGTGGGGGCTCGGCCCGCCAAATGC
CCCAGCCAGTCTCAGCGGCAGGGCTCGCCCACCTGTTCCTCCCCCAGCCTTCCTAGTCCACCCC
AGGTTGGACGCCCCCCTGGGGTACAGGAAGGAGCAAGAGCCGGAGGCCCCGCCCTCCATGCCAC
AGGCAAGATGAGAGCAGCTGGCACCCACCTGCTCAGGTGAGGCCCAGGTCCCCTGTGGCAGCCG
CCCGAGGCCAGGCTTGCGTCCACCCTCCTGCTTCCACCGCGGCTGCTGGCCCGCGGGGCGCTGG
TACCCGAGCTGCCCGCCCTTCTGCTCCCCACCCCCAGGGTTCTGGTTCCATCCTTTCCTCTGTT
CACAAACTACCTCTGGACAGTTGTGTTGGTTTTTGTTCAACGTTTCACTCTTAGACATTTGTCG
TTGCTGCTGCCATCAGCGCCAGACGTTCATCCTCATTGCCTCCCGTTCTGCCCTGTTCCCTCCC
CAAGACGGGGGCTGGGGCGCCCAGGCTGGGTGCAGAGCACCCCAGTCCCAGGGAAGGTGGGGCG
TTGCCCCTAGGATGCTGCCACAGAGTGAGGAGGGGCCATGTCGACCATGGAAGGGTGTAGGGGC
CACCAGCTCCCCCTGTTCTGTTGGGGAGGGTGGCCATTATTTGTCCCAGCCTGGGGCTCCCCCT
CTGGTTTCCTATTTGCAGTTACTTGAATAAAAAAATATCCTTTTCTGGA

hide sequence

Protein Sequences


Protein RefSeqs	XP_013372538	(Get FASTA)	NCBI Sequence Viewer
	XP_013372539	(Get FASTA)	NCBI Sequence Viewer
	XP_013372540	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCLAP00000015200
	ENSCLAP00000015200.1
	ENSCLAP00000015201
	ENSCLAP00000015201.1

RefSeq Acc Id:	XP_013372540 ⟸ XM_013517086
- Peptide Label:	isoform X2
- UniProtKB:	A0A8C2VIH9 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSESSSKSSQPLASKQEKDGTEKRGRGRPRKQPPVSPKEPSEVPTPKRPRGRPKGSKNKGAAKI RKTTTAPGRKPRGRPKKLEKEEEEGISQESSEEEQ hide sequence

RefSeq Acc Id:	XP_013372539 ⟸ XM_013517085
- Peptide Label:	isoform X1
- UniProtKB:	A0A8C2VLU2 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSESSSKSSQPLASKQEKDGTEKRGRGRPRKQPPVSPVSPGTALVGSQKEPSEVPTPKRPRGRP KGSKNKGAAKIRKTTTAPGRKPRGRPKKLEKEEEEGISQESSEEEQ hide sequence

RefSeq Acc Id:	XP_013372538 ⟸ XM_013517084
- Peptide Label:	isoform X1
- UniProtKB:	A0A8C2VLU2 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSESSSKSSQPLASKQEKDGTEKRGRGRPRKQPPVSPVSPGTALVGSQKEPSEVPTPKRPRGRP KGSKNKGAAKIRKTTTAPGRKPRGRPKKLEKEEEEGISQESSEEEQ hide sequence

RefSeq Acc Id:

ENSCLAP00000015201 ⟸ ENSCLAT00000015361

RefSeq Acc Id:

ENSCLAP00000015200 ⟸ ENSCLAT00000015360

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCLAG00000010467	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCLAT00000015360	ENTREZGENE
	ENSCLAT00000015360.1	UniProtKB/TrEMBL
	ENSCLAT00000015361	ENTREZGENE
	ENSCLAT00000015361.1	UniProtKB/TrEMBL
InterPro	AT_hook_DNA-bd_motif	UniProtKB/TrEMBL
	HMGA	UniProtKB/TrEMBL
	HMGI/Y_DNA-bd_CS	UniProtKB/TrEMBL
NCBI Gene	Hmga1	ENTREZGENE
PANTHER	HIGH MOBILITY GROUP PROTEIN HMG-I/HMG-Y	UniProtKB/TrEMBL
	HIGH MOBILITY GROUP PROTEINS HMG-A AND C	UniProtKB/TrEMBL
PRINTS	ATHOOK	UniProtKB/TrEMBL
	HIGHMOBLTYIY	UniProtKB/TrEMBL
PROSITE	HMGI_Y	UniProtKB/TrEMBL
SMART	AT_hook	UniProtKB/TrEMBL
UniProt	A0A8C2VIH9	ENTREZGENE, UniProtKB/TrEMBL
	A0A8C2VLU2	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM

Imported Annotations - PID (archival)

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM

Imported Annotations - PID (archival)