HMGA2 (high mobility group AT-hook 2) - Rat Genome Database

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Gene: HMGA2 (high mobility group AT-hook 2) Homo sapiens
Analyze
Symbol: HMGA2
Name: high mobility group AT-hook 2
RGD ID: 1348013
HGNC Page HGNC:5009
Description: Enables several functions, including DNA binding activity; catalytic activity, acting on DNA; and protein domain specific binding activity. Involved in several processes, including chondrocyte proliferation; formation of primary germ layer; and regulation of macromolecule biosynthetic process. Located in nucleus and senescence-associated heterochromatin focus. Part of SMAD protein complex and protein-DNA complex. Implicated in Silver-Russell syndrome; leiomyoma; lipoma; and ovarian cancer.
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: BABL; high mobility group AT-hook protein 2; high mobility group protein HMGI-C; high-mobility group (nonhistone chromosomal) protein isoform I-C; High-mobility group protein HMGI-C; HMGA2/KRT121P fusion; HMGI-C; HMGIC; LIPO; SRS5; STQTL9
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381265,824,460 - 65,966,291 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1265,824,460 - 65,966,291 (+)EnsemblGRCh38hg38GRCh38
GRCh371266,218,240 - 66,360,071 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361264,504,507 - 64,646,338 (+)NCBINCBI36Build 36hg18NCBI36
Build 341264,504,457 - 64,646,266NCBI
Celera1265,883,845 - 66,025,902 (+)NCBICelera
Cytogenetic Map12q14.3NCBI
HuRef1263,271,242 - 63,413,086 (+)NCBIHuRef
CHM1_11266,185,507 - 66,327,350 (+)NCBICHM1_1
T2T-CHM13v2.01265,803,963 - 65,945,820 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-catechin  (EXP)
(-)-demecolcine  (EXP)
(-)-epigallocatechin 3-gallate  (EXP)
1,2-dimethylhydrazine  (ISO)
1-nitropyrene  (EXP)
17beta-estradiol  (EXP,ISO)
2,3,7,8-tetrachlorodibenzodioxine  (ISO)
2,4-diaminotoluene  (ISO)
2-butan-2-yl-4-[4-[4-[4-[[2-(2,4-dichlorophenyl)-2-(1,2,4-triazol-1-ylmethyl)-1,3-dioxolan-4-yl]methoxy]phenyl]-1-piperazinyl]phenyl]-1,2,4-triazol-3-one  (ISO)
2-deoxy-D-glucose  (EXP)
2-methoxyethanol  (ISO)
3,3',5,5'-tetrabromobisphenol A  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (EXP)
3-methyladenine  (EXP)
3-methylcholanthrene  (ISO)
4,4'-diaminodiphenylmethane  (ISO)
4,4'-sulfonyldiphenol  (EXP)
4-hydroxynon-2-enal  (ISO)
4-nitrophenol  (ISO)
4-phenylbutyric acid  (EXP)
5-azacytidine  (EXP)
acrylamide  (EXP)
aflatoxin B1  (EXP,ISO)
aflatoxin M1  (EXP)
aldehydo-D-glucose  (ISO)
all-trans-retinoic acid  (EXP,ISO)
antimycin A  (EXP)
aristolochic acid A  (EXP)
arsane  (EXP)
arsenic atom  (EXP)
atrazine  (ISO)
benzo[a]pyrene  (EXP,ISO)
benzo[a]pyrene diol epoxide I  (EXP)
beta-lapachone  (EXP)
bisphenol A  (EXP,ISO)
Bisphenol B  (EXP)
bisphenol F  (EXP)
butanal  (EXP)
cadmium atom  (EXP,ISO)
cadmium dichloride  (EXP,ISO)
cadmium sulfate  (EXP)
caffeine  (EXP)
cannabidiol  (EXP)
chlorpyrifos  (ISO)
choline  (ISO)
chromium(6+)  (EXP)
ciguatoxin CTX1B  (ISO)
cisplatin  (EXP,ISO)
cobalt dichloride  (EXP)
copper(II) chloride  (EXP)
copper(II) sulfate  (EXP)
crocidolite asbestos  (EXP)
crotonaldehyde  (EXP)
cyclosporin A  (EXP,ISO)
D-glucose  (ISO)
DDE  (EXP)
decabromodiphenyl ether  (ISO)
deguelin  (EXP)
dexamethasone  (EXP)
dioxygen  (EXP,ISO)
dorsomorphin  (EXP)
doxorubicin  (EXP)
doxycycline  (EXP)
endosulfan  (ISO)
erastin  (EXP)
ethyl methanesulfonate  (EXP)
etoposide  (EXP)
fluoranthene  (ISO)
folic acid  (ISO)
formaldehyde  (EXP)
FR900359  (EXP)
genistein  (EXP)
gentamycin  (ISO)
glucose  (ISO)
hypochlorous acid  (ISO)
indometacin  (EXP)
itraconazole  (ISO)
ivermectin  (EXP)
ketoconazole  (ISO)
L-methionine  (ISO)
lead(0)  (EXP)
maneb  (ISO)
melphalan  (EXP)
methyl methanesulfonate  (EXP)
methylmercury chloride  (EXP)
methylparaben  (EXP)
mitomycin C  (EXP)
mono(2-ethylhexyl) phthalate  (EXP,ISO)
Monobutylphthalate  (ISO)
N-acetyl-L-cysteine  (EXP)
N-methyl-4-phenylpyridinium  (EXP,ISO)
N-nitrosodiethylamine  (EXP,ISO)
paracetamol  (EXP,ISO)
paraquat  (ISO)
pentanal  (EXP)
perfluorohexanesulfonic acid  (ISO)
perfluorononanoic acid  (EXP)
permethrin  (EXP)
phenanthrene  (EXP)
phenobarbital  (ISO)
pirinixic acid  (ISO)
piroxicam  (EXP)
potassium dichromate  (EXP,ISO)
pregnenolone 16alpha-carbonitrile  (ISO)
progesterone  (ISO)
quercitrin  (EXP)
raloxifene  (EXP)
resveratrol  (ISO)
rotenone  (EXP)
SB 203580  (ISO)
SB 431542  (EXP)
serpentine asbestos  (ISO)
silicon dioxide  (EXP,ISO)
sodium arsenite  (EXP)
sulforaphane  (EXP)
sunitinib  (EXP)
tebufenpyrad  (EXP)
tert-butyl hydroperoxide  (ISO)
tetrachloromethane  (ISO)
thiram  (EXP)
titanium dioxide  (ISO)
topotecan  (EXP)
trichostatin A  (EXP)
triclosan  (EXP)
triptonide  (ISO)
trovafloxacin  (ISO)
tunicamycin  (EXP)
urethane  (EXP)
valproic acid  (EXP,ISO)
vincristine  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
adipose tissue development  (ISO)
adrenal gland development  (ISO)
astrocyte differentiation  (ISO)
base-excision repair  (IDA)
cell division  (IEA)
cell population proliferation  (ISO)
cell proliferation in forebrain  (ISO)
chondrocyte differentiation  (IDA)
chondrocyte proliferation  (IDA)
chromatin organization  (TAS)
chromosome condensation  (IEA)
endodermal cell differentiation  (IMP)
epithelial to mesenchymal transition  (IMP)
epithelial tube branching involved in lung morphogenesis  (ISO)
fat cell differentiation  (IMP)
fat pad development  (ISO)
fibroblast proliferation  (ISO)
heterochromatin formation  (IDA)
intracellular signal transduction  (IDA)
lung epithelium development  (ISO)
male gonad development  (ISO)
mesenchymal cell differentiation  (IMP)
mesodermal cell differentiation  (IMP)
mesodermal-endodermal cell signaling  (IMP)
multicellular organism growth  (ISO)
negative regulation by host of viral transcription  (IDA)
negative regulation of apoptotic process  (IDA)
negative regulation of astrocyte differentiation  (ISO)
negative regulation of cellular senescence  (ISS)
negative regulation of DNA-templated transcription  (IDA,IMP)
negative regulation of double-strand break repair via nonhomologous end joining  (IDA)
negative regulation of intracellular steroid hormone receptor signaling pathway  (ISO)
negative regulation of receptor signaling pathway via JAK-STAT  (ISO)
negative regulation of single stranded viral RNA replication via double stranded DNA intermediate  (IDA)
negative regulation of transcription by RNA polymerase II  (IDA,ISO)
negative regulation of Wnt signaling pathway  (ISO)
oncogene-induced cell senescence  (IDA)
pituitary gland development  (ISO)
positive regulation of angiogenesis  (ISS)
positive regulation of cell population proliferation  (ISO)
positive regulation of cell proliferation in bone marrow  (ISS)
positive regulation of DNA-binding transcription factor activity  (ISO)
positive regulation of DNA-templated transcription  (IDA,IMP)
positive regulation of epithelial cell proliferation involved in lung morphogenesis  (ISO)
positive regulation of fibroblast proliferation  (ISO)
positive regulation of gene expression  (IDA)
positive regulation of macromolecule biosynthetic process  (IEA)
positive regulation of multicellular organism growth  (ISO)
positive regulation of protein serine/threonine kinase activity  (IDA)
positive regulation of stem cell proliferation  (IDA,IMP,ISO)
positive regulation of transcription by RNA polymerase II  (IDA,ISO)
regulation of cell cycle process  (IDA)
regulation of DNA-templated transcription  (IBA,IEA,IMP)
regulation of gene expression  (IEA)
regulation of growth hormone secretion  (ISO)
regulation of peptide hormone secretion  (ISO)
regulation of stem cell population maintenance  (IMP,TAS)
response to virus  (IEP)
somatic stem cell population maintenance  (ISO)
spermatogenesis  (ISO)
stem cell differentiation  (IEP)
stem cell proliferation  (ISO)

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View

Human Phenotype
Abnormal nostril morphology  (IAGP)
Abnormal renal physiology  (IAGP)
Abnormal scrotum morphology  (IAGP)
Abnormality of the cardiovascular system  (IAGP)
Abnormality of the spleen  (IAGP)
Asthma  (IAGP)
Asymmetric growth  (IAGP)
Attention deficit hyperactivity disorder  (IAGP)
Autosomal dominant inheritance  (IAGP)
Bifid scrotum  (IAGP)
Birth length less than 3rd percentile  (IAGP)
Cafe-au-lait spot  (IAGP)
Chiari malformation  (IAGP)
Cleft palate  (IAGP)
Clinodactyly of the 5th finger  (IAGP)
Cryptorchidism  (IAGP)
Deeply set eye  (IAGP)
Delayed skeletal maturation  (IAGP)
Delayed speech and language development  (IAGP)
Diabetes mellitus  (IAGP)
Downturned corners of mouth  (IAGP)
Dysmenorrhea  (IAGP)
Ectopic kidney  (IAGP)
Ectrodactyly  (IAGP)
Failure to thrive  (IAGP)
Feeding difficulties in infancy  (IAGP)
Frontal bossing  (IAGP)
Gastrointestinal dysmotility  (IAGP)
Global developmental delay  (IAGP)
Horseshoe kidney  (IAGP)
Hyperpigmentation of the skin  (IAGP)
Hypertelorism  (IAGP)
Hypodontia  (IAGP)
Hypoglycemia  (IAGP)
Hypoplastic fingernail  (IAGP)
Hypospadias  (IAGP)
Hypothyroidism  (IAGP)
Hypotonia  (IAGP)
Inguinal hernia  (IAGP)
Intellectual disability, mild  (IAGP)
Intestinal malrotation  (IAGP)
Intrauterine growth retardation  (IAGP)
Low-set ears  (IAGP)
Microcephaly  (IAGP)
Micrognathia  (IAGP)
Microphallus  (IAGP)
Motor delay  (IAGP)
Oligohydramnios  (IAGP)
Osteopoikilosis  (IAGP)
Polydactyly  (IAGP)
Postnatal growth retardation  (IAGP)
Prominent forehead  (IAGP)
Prominent nasal bridge  (IAGP)
Relative macrocephaly  (IAGP)
Renal hypoplasia  (IAGP)
Scoliosis  (IAGP)
Short 5th finger  (IAGP)
Short stature  (IAGP)
Skeletal muscle atrophy  (IAGP)
Small for gestational age  (IAGP)
Small placenta  (IAGP)
Specific learning disability  (IAGP)
Subcutaneous nodule  (IAGP)
Syndactyly  (IAGP)
Synophrys  (IAGP)
Syringomyelia  (IAGP)
Thick eyebrow  (IAGP)
Thin vermilion border  (IAGP)
Tremor  (IAGP)
Triangular face  (IAGP)
Uterine leiomyoma  (IAGP)
Wide nose  (IAGP)
References

References - curated
# Reference Title Reference Citation
1. In vivo modulation of Hmgic reduces obesity. Anand A and Chada K, Nat Genet. 2000 Apr;24(4):377-80.
2. Disruption of the architectural factor HMGI-C: DNA-binding AT hook motifs fused in lipomas to distinct transcriptional regulatory domains. Ashar HR, etal., Cell. 1995 Jul 14;82(1):57-65.
3. GOAs Human GO annotations GOA_HUMAN data from the GO Consortium
4. Fusion transcripts between the HMGIC gene and RTVL-H-related sequences in mesenchymal tumors without cytogenetic aberrations. Kazmierczak B, etal., Genomics. 1996 Dec 1;38(2):223-6.
5. HMGA2 gene is a promising target for ovarian cancer silencing therapy. Malek A, etal., Int J Cancer. 2008 Jul 15;123(2):348-56.
6. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
8. RGD HPO Phenotype Annotation Pipeline RGD automated import pipeline for human HPO-to-gene-to-disease annotations
9. Requirement for high mobility group protein HMGI-C interaction with STAT3 inhibitor PIAS3 in repression of alpha-subunit of epithelial Na+ channel (alpha-ENaC) transcription by Ras activation in salivary epithelial cells. Zentner MD, etal., J Biol Chem. 2001 Aug 10;276(32):29805-14. Epub 2001 Jun 4.
Additional References at PubMed
PMID:1762909   PMID:7501444   PMID:7529547   PMID:7670494   PMID:8198613   PMID:8824803   PMID:9003504   PMID:9772904   PMID:9892177   PMID:10398424   PMID:10586108   PMID:10636877  
PMID:10889043   PMID:11034995   PMID:11066083   PMID:11406267   PMID:11839563   PMID:11894114   PMID:11921278   PMID:12419585   PMID:12477932   PMID:12505264   PMID:12569368   PMID:12649198  
PMID:12693954   PMID:12778070   PMID:12781451   PMID:12799440   PMID:12874787   PMID:13679031   PMID:14603445   PMID:14614053   PMID:14627817   PMID:14645522   PMID:14647145   PMID:15026339  
PMID:15146197   PMID:15225648   PMID:15618962   PMID:15618963   PMID:15755872   PMID:15882911   PMID:16061642   PMID:16077985   PMID:16222997   PMID:16271958   PMID:16276091   PMID:16293633  
PMID:16322327   PMID:16341674   PMID:16375854   PMID:16766265   PMID:16791210   PMID:16831886   PMID:16901784   PMID:17005673   PMID:17045619   PMID:17078040   PMID:17222355   PMID:17322030  
PMID:17324944   PMID:17332316   PMID:17426251   PMID:17437991   PMID:17477356   PMID:17624332   PMID:17654722   PMID:17767157   PMID:17854665   PMID:17917958   PMID:17917968   PMID:17935122  
PMID:17943974   PMID:17957144   PMID:18193045   PMID:18202751   PMID:18214854   PMID:18375116   PMID:18391950   PMID:18391951   PMID:18391952   PMID:18403645   PMID:18413822   PMID:18425117  
PMID:18505920   PMID:18784955   PMID:18828159   PMID:18832382   PMID:18843278   PMID:18850631   PMID:18980243   PMID:18983959   PMID:19003801   PMID:19132395   PMID:19136928   PMID:19139030  
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PMID:19508721   PMID:19521953   PMID:19549901   PMID:19551524   PMID:19584346   PMID:19602040   PMID:19609535   PMID:19837271   PMID:19898227   PMID:19913121   PMID:19930247   PMID:20004941  
PMID:20007691   PMID:20058197   PMID:20108983   PMID:20195514   PMID:20228781   PMID:20301499   PMID:20347930   PMID:20368557   PMID:20397748   PMID:20461755   PMID:20544840   PMID:20551826  
PMID:20581827   PMID:20597139   PMID:20610542   PMID:20628086   PMID:20804914   PMID:20804922   PMID:20834238   PMID:20881960   PMID:20889853   PMID:20926602   PMID:20946527   PMID:21150874  
PMID:21224353   PMID:21252160   PMID:21267005   PMID:21412931   PMID:21484705   PMID:21498692   PMID:21533145   PMID:21536653   PMID:21598109   PMID:21692035   PMID:21769890   PMID:21803798  
PMID:21873635   PMID:21907836   PMID:21921580   PMID:21931568   PMID:21998595   PMID:22017592   PMID:22019704   PMID:22021425   PMID:22137485   PMID:22139073   PMID:22199144   PMID:22221703  
PMID:22246783   PMID:22250726   PMID:22404713   PMID:22461106   PMID:22476403   PMID:22504417   PMID:22504419   PMID:22547345   PMID:22564666   PMID:22593436   PMID:22613496   PMID:22726539  
PMID:22843696   PMID:22885925   PMID:22974476   PMID:23111731   PMID:23134218   PMID:23134771   PMID:23135750   PMID:23144634   PMID:23202124   PMID:23237864   PMID:23240041   PMID:23268403  
PMID:23276696   PMID:23307470   PMID:23525579   PMID:23529275   PMID:23530587   PMID:23536553   PMID:23563607   PMID:23591597   PMID:23593123   PMID:23625920   PMID:23633021   PMID:23639551  
PMID:23704328   PMID:23716660   PMID:23722545   PMID:23738717   PMID:23765903   PMID:23898062   PMID:23969248   PMID:23975428   PMID:24122990   PMID:24144296   PMID:24145240   PMID:24390224  
PMID:24423609   PMID:24451956   PMID:24468654   PMID:24507678   PMID:24508460   PMID:24509480   PMID:24516594   PMID:24571540   PMID:24612219   PMID:24617339   PMID:24682444   PMID:24711643  
PMID:24724096   PMID:24920070   PMID:24935062   PMID:25014774   PMID:25037576   PMID:25102180   PMID:25172097   PMID:25218351   PMID:25236537   PMID:25245603   PMID:25281560   PMID:25281659  
PMID:25300915   PMID:25380351   PMID:25429064   PMID:25439740   PMID:25444913   PMID:25542836   PMID:25557289   PMID:25575139   PMID:25585965   PMID:25609649   PMID:25749380   PMID:25809938  
PMID:25823555   PMID:25845850   PMID:25867809   PMID:25868853   PMID:25884389   PMID:25919570   PMID:25968875   PMID:26025649   PMID:26138061   PMID:26165228   PMID:26165842   PMID:26183485  
PMID:26202160   PMID:26239806   PMID:26240284   PMID:26242267   PMID:26319392   PMID:26336885   PMID:26341146   PMID:26406941   PMID:26408423   PMID:26536448   PMID:26608380   PMID:26646104  
PMID:26657872   PMID:26684800   PMID:26687479   PMID:26799419   PMID:26816005   PMID:26818837   PMID:26857357   PMID:26858029   PMID:26882287   PMID:26888666   PMID:26892260   PMID:26960757  
PMID:26964871   PMID:26968810   PMID:27027341   PMID:27063096   PMID:27102002   PMID:27119517   PMID:27240983   PMID:27245202   PMID:27259253   PMID:27261623   PMID:27262492   PMID:27513632  
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PMID:27929737   PMID:28057739   PMID:28119367   PMID:28169242   PMID:28373457   PMID:28423547   PMID:28463429   PMID:28522832   PMID:28533522   PMID:28651497   PMID:28691642   PMID:28710822  
PMID:28720546   PMID:28752530   PMID:28765279   PMID:28796236   PMID:28814752   PMID:28927264   PMID:28954272   PMID:28968424   PMID:29025376   PMID:29109785   PMID:29128334   PMID:29135520  
PMID:29138866   PMID:29193056   PMID:29262356   PMID:29266325   PMID:29278873   PMID:29384529   PMID:29391048   PMID:29406334   PMID:29432944   PMID:29436648   PMID:29437290   PMID:29467282  
PMID:29625070   PMID:29655892   PMID:29659195   PMID:29790226   PMID:29883241   PMID:29974827   PMID:29987050   PMID:30017537   PMID:30021884   PMID:30137214   PMID:30175854   PMID:30177390  
PMID:30220054   PMID:30247605   PMID:30289618   PMID:30317663   PMID:30402842   PMID:30472720   PMID:30535487   PMID:30535489   PMID:30556870   PMID:30569167   PMID:30654010   PMID:30659647  
PMID:30711544   PMID:30808686   PMID:30825204   PMID:30851271   PMID:30853598   PMID:30896854   PMID:30999005   PMID:31053152   PMID:31053526   PMID:31055021   PMID:31067275   PMID:31076808  
PMID:31094927   PMID:31109142   PMID:31109401   PMID:31147574   PMID:31173171   PMID:31196492   PMID:31207579   PMID:31408273   PMID:31413213   PMID:31432151   PMID:31481527   PMID:31630797  
PMID:31668113   PMID:31670857   PMID:31746066   PMID:31822558   PMID:31823639   PMID:31881015   PMID:31898667   PMID:31900140   PMID:31900314   PMID:31910357   PMID:31957824   PMID:31959478  
PMID:32051553   PMID:32203420   PMID:32228703   PMID:32313942   PMID:32413362   PMID:32421827   PMID:32432318   PMID:32432734   PMID:32443824   PMID:32588766   PMID:32592217   PMID:32620742  
PMID:32651705   PMID:32687490   PMID:32707033   PMID:32719345   PMID:32838437   PMID:32878723   PMID:32898013   PMID:32989627   PMID:33139812   PMID:33168056   PMID:33237328   PMID:33257506  
PMID:33307962   PMID:33315504   PMID:33376002   PMID:33433801   PMID:33452460   PMID:33481014   PMID:33482836   PMID:33639654   PMID:33650644   PMID:33668453   PMID:33742141   PMID:33744765  
PMID:33846810   PMID:33887625   PMID:33901298   PMID:33927188   PMID:33961781   PMID:33978716   PMID:33993846   PMID:34079125   PMID:34166916   PMID:34230950   PMID:34274506   PMID:34284697  
PMID:34302528   PMID:34308851   PMID:34324456   PMID:34349018   PMID:34356120   PMID:34532814   PMID:34547256   PMID:34552050   PMID:34564768   PMID:34592894   PMID:34593318   PMID:34605103  
PMID:34626221   PMID:34913073   PMID:34973275   PMID:34976223   PMID:35000195   PMID:35013218   PMID:35031058   PMID:35080988   PMID:35092501   PMID:35181586   PMID:35213273   PMID:35337019  
PMID:35384245   PMID:35388172   PMID:35439951   PMID:35466471   PMID:35482475   PMID:35502885   PMID:35552087   PMID:35575683   PMID:35831314   PMID:35944360   PMID:36102493   PMID:36180891  
PMID:36215168   PMID:36380368   PMID:36473502   PMID:36564076   PMID:36732658   PMID:36809792   PMID:36835656   PMID:36881074   PMID:37164154   PMID:37283291   PMID:37352786   PMID:37368192  
PMID:37445942   PMID:37461232   PMID:37596147   PMID:37640791   PMID:37755629   PMID:37822284   PMID:37849332   PMID:37997502   PMID:38112616   PMID:38151824   PMID:38266920   PMID:38334954  
PMID:38378354   PMID:38506034   PMID:38516887   PMID:38697112   PMID:38708906   PMID:38802807   PMID:38811851   PMID:39032683   PMID:39089476   PMID:39238192  


Genomics

Comparative Map Data
HMGA2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381265,824,460 - 65,966,291 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1265,824,460 - 65,966,291 (+)EnsemblGRCh38hg38GRCh38
GRCh371266,218,240 - 66,360,071 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361264,504,507 - 64,646,338 (+)NCBINCBI36Build 36hg18NCBI36
Build 341264,504,457 - 64,646,266NCBI
Celera1265,883,845 - 66,025,902 (+)NCBICelera
Cytogenetic Map12q14.3NCBI
HuRef1263,271,242 - 63,413,086 (+)NCBIHuRef
CHM1_11266,185,507 - 66,327,350 (+)NCBICHM1_1
T2T-CHM13v2.01265,803,963 - 65,945,820 (+)NCBIT2T-CHM13v2.0
Hmga2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3910120,197,173 - 120,312,374 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl10120,197,180 - 120,312,374 (-)EnsemblGRCm39 Ensembl
GRCm3810120,361,268 - 120,476,469 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl10120,361,275 - 120,476,469 (-)EnsemblGRCm38mm10GRCm38
MGSCv3710119,798,331 - 119,913,991 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3610119,764,721 - 119,880,028 (-)NCBIMGSCv36mm8
Celera10122,723,179 - 122,838,757 (-)NCBICelera
Cytogenetic Map10D2NCBI
cM Map1067.94NCBI
Hmga2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8757,762,710 - 57,884,555 (-)NCBIGRCr8
mRatBN7.2755,877,145 - 55,998,813 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl755,880,112 - 55,994,784 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx757,786,495 - 57,901,148 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0759,989,707 - 60,104,351 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0759,767,092 - 59,881,753 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0765,159,944 - 65,275,408 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl765,159,944 - 65,275,408 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0765,375,936 - 65,490,635 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4759,638,555 - 59,753,791 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1759,659,284 - 59,774,521 (-)NCBI
Celera752,634,133 - 52,748,501 (-)NCBICelera
Cytogenetic Map7q22NCBI
Hmga2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495545812,493,790 - 12,624,805 (+)NCBIChiLan1.0ChiLan1.0
HMGA2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21028,400,118 - 28,548,065 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11228,396,888 - 28,538,621 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01222,954,946 - 23,096,623 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
HMGA2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1108,348,101 - 8,491,435 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha108,278,957 - 8,424,016 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0108,459,176 - 8,604,625 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl108,459,180 - 8,601,880 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1108,335,596 - 8,480,987 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0108,581,865 - 8,727,080 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0108,703,471 - 8,848,741 (+)NCBIUU_Cfam_GSD_1.0
Hmga2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494550,151,774 - 50,166,701 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365453,944,419 - 4,064,193 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365453,944,419 - 3,958,289 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
HMGA2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1530,188,521 - 30,329,635 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2533,375,397 - 33,516,455 (+)NCBISscrofa10.2Sscrofa10.2susScr3
HMGA2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11161,509,114 - 61,655,633 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666037184,069,350 - 184,211,090 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Hmga2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248022,337,464 - 2,467,990 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248022,337,344 - 2,468,757 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in HMGA2
55 total Variants

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 12q14.2-15(chr12:64368308-69123358)x1 copy number loss Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000052815]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000052815]|See cases [RCV000052815] Chr12:64368308..69123358 [GRCh38]
Chr12:64762088..69517138 [GRCh37]
Chr12:63048355..67803405 [NCBI36]
Chr12:12q14.2-15
pathogenic
GRCh38/hg38 12q14.3-15(chr12:65958499-69057308)x1 copy number loss See cases [RCV000052816] Chr12:65958499..69057308 [GRCh38]
Chr12:66352279..69451088 [GRCh37]
Chr12:64638546..67737355 [NCBI36]
Chr12:12q14.3-15
pathogenic|likely pathogenic
GRCh38/hg38 12q14.1-14.3(chr12:60907151-66568077)x1 copy number loss See cases [RCV000138985] Chr12:60907151..66568077 [GRCh38]
Chr12:61300932..66961857 [GRCh37]
Chr12:59587199..65248124 [NCBI36]
Chr12:12q14.1-14.3
pathogenic
GRCh38/hg38 12p13.33-q24.33(chr12:121271-133196807)x3 copy number gain See cases [RCV000139555] Chr12:121271..133196807 [GRCh38]
Chr12:282465..133773393 [GRCh37]
Chr12:100698..132283466 [NCBI36]
Chr12:12p13.33-q24.33
pathogenic
GRCh38/hg38 12q14.3-15(chr12:65445176-71026337)x1 copy number loss See cases [RCV000142445] Chr12:65445176..71026337 [GRCh38]
Chr12:65838956..71420117 [GRCh37]
Chr12:64125223..69706384 [NCBI36]
Chr12:12q14.3-15
pathogenic
GRCh37/hg19 12p13.33-q24.33(chr12:1-133851895)x3 copy number gain See cases [RCV000258805] Chr12:1..133851895 [GRCh37]
Chr12:12p13.33-q24.33
pathogenic|likely pathogenic
GRCh37/hg19 12q14.1-15(chr12:59495114-70574966)x1 copy number loss See cases [RCV000447164] Chr12:59495114..70574966 [GRCh37]
Chr12:12q14.1-15
pathogenic
GRCh37/hg19 12p13.33-q24.33(chr12:173787-133777902)x3 copy number gain See cases [RCV000510482] Chr12:173787..133777902 [GRCh37]
Chr12:12p13.33-q24.33
pathogenic
NM_003483.6(HMGA2):c.193C>T (p.Gln65Ter) single nucleotide variant Silver-Russell syndrome 1 [RCV000491113]|Silver-Russell syndrome 5 [RCV001174518]|not provided [RCV003223633] Chr12:65828082 [GRCh38]
Chr12:66221862 [GRCh37]
Chr12:12q14.3
pathogenic
NM_003483.6(HMGA2):c.189del (p.Ala64fs) deletion Silver-Russell syndrome 1 [RCV000491565]|Silver-Russell syndrome 5 [RCV001174519] Chr12:65828078 [GRCh38]
Chr12:66221858 [GRCh37]
Chr12:12q14.3
pathogenic
GRCh37/hg19 12p13.33-q24.33(chr12:173787-133777902) copy number gain See cases [RCV000511643] Chr12:173787..133777902 [GRCh37]
Chr12:12p13.33-q24.33
pathogenic
GRCh37/hg19 12p13.33-q24.33(chr12:191619-133777645)x3 copy number gain not provided [RCV000750246] Chr12:191619..133777645 [GRCh37]
Chr12:12p13.33-q24.33
pathogenic
GRCh37/hg19 12p13.33-q24.33(chr12:621220-133779118)x3 copy number gain not provided [RCV000750253] Chr12:621220..133779118 [GRCh37]
Chr12:12p13.33-q24.33
pathogenic
NM_003483.6(HMGA2):c.300A>T (p.Thr100=) single nucleotide variant not provided [RCV000879824] Chr12:65963262 [GRCh38]
Chr12:66357042 [GRCh37]
Chr12:12q14.3
likely benign
NM_003483.6(HMGA2):c.199-8A>G single nucleotide variant HMGA2-related disorder [RCV003913230]|Silver-Russell syndrome 5 [RCV002479090]|not provided [RCV000947473] Chr12:65838511 [GRCh38]
Chr12:66232291 [GRCh37]
Chr12:12q14.3
benign|likely benign
GRCh37/hg19 12q14.3(chr12:66285627-66718973)x3 copy number gain not provided [RCV000848983] Chr12:66285627..66718973 [GRCh37]
Chr12:12q14.3
uncertain significance
GRCh37/hg19 12q14.3(chr12:66200777-66575257)x1 copy number loss not provided [RCV000846512] Chr12:66200777..66575257 [GRCh37]
Chr12:12q14.3
pathogenic
NM_003483.6(HMGA2):c.231A>G (p.Arg77=) single nucleotide variant not provided [RCV000893248] Chr12:65838551 [GRCh38]
Chr12:66232331 [GRCh37]
Chr12:12q14.3
likely benign
NM_003483.6(HMGA2):c.283-6_283del deletion Silver-Russell syndrome 5 [RCV001174517] Chr12:65963238..65963244 [GRCh38]
Chr12:66357018..66357024 [GRCh37]
Chr12:12q14.3
pathogenic
NM_003483.6(HMGA2):c.303del (p.Ser102fs) deletion Silver-Russell syndrome 5 [RCV001174520]|not provided [RCV001751307] Chr12:65963264 [GRCh38]
Chr12:66357044 [GRCh37]
Chr12:12q14.3
pathogenic|uncertain significance
NM_003483.6(HMGA2):c.282+9T>C single nucleotide variant not provided [RCV000927608] Chr12:65951424 [GRCh38]
Chr12:66345204 [GRCh37]
Chr12:12q14.3
likely benign
NM_003483.6(HMGA2):c.315T>C (p.Ser105=) single nucleotide variant not provided [RCV000901059] Chr12:65963277 [GRCh38]
Chr12:66357057 [GRCh37]
Chr12:12q14.3
likely benign
NM_003483.6(HMGA2):c.274C>G (p.Pro92Ala) single nucleotide variant HMGA2-related disorder [RCV003916201]|not provided [RCV000965962] Chr12:65951407 [GRCh38]
Chr12:66345187 [GRCh37]
Chr12:12q14.3
benign|likely benign
NM_003483.6(HMGA2):c.283-2A>G single nucleotide variant Uterine leiomyoma [RCV000985215] Chr12:65963243 [GRCh38]
Chr12:66357023 [GRCh37]
Chr12:12q14.3
uncertain significance
GRCh37/hg19 12q14.3-21.1(chr12:65251705-75263379)x1 copy number loss not provided [RCV001537907] Chr12:65251705..75263379 [GRCh37]
Chr12:12q14.3-21.1
pathogenic
GRCh37/hg19 12q14.3-15(chr12:66045645-68872343)x1 copy number loss not provided [RCV001832934] Chr12:66045645..68872343 [GRCh37]
Chr12:12q14.3-15
pathogenic
NM_003483.6(HMGA2):c.47dup (p.Gln18fs) duplication Silver-Russell syndrome 5 [RCV002227000] Chr12:65825316..65825317 [GRCh38]
Chr12:66219096..66219097 [GRCh37]
Chr12:12q14.3
pathogenic
NM_003483.6(HMGA2):c.44_48del (p.Ala15fs) deletion Silver-Russell syndrome 5 [RCV002283710] Chr12:65825311..65825315 [GRCh38]
Chr12:66219091..66219095 [GRCh37]
Chr12:12q14.3
likely pathogenic
NM_003483.6(HMGA2):c.111+6T>A single nucleotide variant Silver-Russell syndrome 5 [RCV003152839] Chr12:65825387 [GRCh38]
Chr12:66219167 [GRCh37]
Chr12:12q14.3
uncertain significance
NM_003483.6(HMGA2):c.223C>T (p.Arg75Trp) single nucleotide variant not provided [RCV002469487] Chr12:65838543 [GRCh38]
Chr12:66232323 [GRCh37]
Chr12:12q14.3
uncertain significance
NM_003483.6(HMGA2):c.154C>T (p.Pro52Ser) single nucleotide variant not provided [RCV002300784] Chr12:65828043 [GRCh38]
Chr12:66221823 [GRCh37]
Chr12:12q14.3
uncertain significance
GRCh37/hg19 12q14.2-15(chr12:64609458-70352103)x1 copy number loss not provided [RCV002511748] Chr12:64609458..70352103 [GRCh37]
Chr12:12q14.2-15
pathogenic
NM_003483.6(HMGA2):c.212C>T (p.Thr71Ile) single nucleotide variant not specified [RCV004101077] Chr12:65838532 [GRCh38]
Chr12:66232312 [GRCh37]
Chr12:12q14.3
uncertain significance
NM_003483.6(HMGA2):c.311A>G (p.Glu104Gly) single nucleotide variant not provided [RCV003319831] Chr12:65963273 [GRCh38]
Chr12:66357053 [GRCh37]
Chr12:12q14.3
uncertain significance
NM_003483.6(HMGA2):c.282+933T>C single nucleotide variant not provided [RCV003326863] Chr12:65952348 [GRCh38]
Chr12:66346128 [GRCh37]
Chr12:12q14.3
likely benign
NM_003483.6(HMGA2):c.250-36302G>A single nucleotide variant not provided [RCV003332838] Chr12:65915081 [GRCh38]
Chr12:66308861 [GRCh37]
Chr12:12q14.3
uncertain significance
GRCh37/hg19 12q14.1-15(chr12:61755618-70035424)x1 copy number loss not provided [RCV003483154] Chr12:61755618..70035424 [GRCh37]
Chr12:12q14.1-15
pathogenic
GRCh37/hg19 12q14.3(chr12:65716808-66690108)x1 copy number loss not provided [RCV003483155] Chr12:65716808..66690108 [GRCh37]
Chr12:12q14.3
pathogenic
NM_003483.6(HMGA2):c.250-36489C>T single nucleotide variant not provided [RCV003398178] Chr12:65914894 [GRCh38]
Chr12:66308674 [GRCh37]
Chr12:12q14.3
likely benign
NM_003483.6(HMGA2):c.250-36267A>G single nucleotide variant HMGA2-related disorder [RCV003939650] Chr12:65915116 [GRCh38]
Chr12:66308896 [GRCh37]
Chr12:12q14.3
benign
GRCh37/hg19 12q14.3(chr12:65462762-66830065)x1 copy number loss not specified [RCV003986967] Chr12:65462762..66830065 [GRCh37]
Chr12:12q14.3
pathogenic
NM_003483.6(HMGA2):c.282+1012T>C single nucleotide variant HMGA2-related disorder [RCV003972227] Chr12:65952427 [GRCh38]
Chr12:66346207 [GRCh37]
Chr12:12q14.3
benign
NM_003483.6(HMGA2):c.15T>G (p.Gly5=) single nucleotide variant HMGA2-related disorder [RCV003911816] Chr12:65825285 [GRCh38]
Chr12:66219065 [GRCh37]
Chr12:12q14.3
likely benign
NM_003483.6(HMGA2):c.*1G>A single nucleotide variant HMGA2-related disorder [RCV003937096] Chr12:65963293 [GRCh38]
Chr12:66357073 [GRCh37]
Chr12:12q14.3
likely benign
NM_003483.6(HMGA2):c.250-36248T>C single nucleotide variant HMGA2-related disorder [RCV003911402] Chr12:65915135 [GRCh38]
Chr12:66308915 [GRCh37]
Chr12:12q14.3
benign
NM_003483.6(HMGA2):c.198+1G>A single nucleotide variant Silver-Russell syndrome 5 [RCV003993701] Chr12:65828088 [GRCh38]
Chr12:66221868 [GRCh37]
Chr12:12q14.3
uncertain significance
NM_003483.6(HMGA2):c.249+3_249+6del deletion Silver-Russell syndrome 5 [RCV003992014] Chr12:65838570..65838573 [GRCh38]
Chr12:66232350..66232353 [GRCh37]
Chr12:12q14.3
uncertain significance
NM_003483.6(HMGA2):c.138_141delinsCT (p.Lys46fs) indel Silver-Russell syndrome 5 [RCV004545971] Chr12:65828027..65828030 [GRCh38]
Chr12:66221807..66221810 [GRCh37]
Chr12:12q14.3
pathogenic
GRCh38/hg38 12q14.2-15(chr12:63871239-67314524) copy number loss Silver-Russell syndrome 5 [RCV004547403] Chr12:63871239..67314524 [GRCh38]
Chr12:12q14.2-15
uncertain significance
NM_003483.6(HMGA2):c.154C>A (p.Pro52Thr) single nucleotide variant not specified [RCV004399651] Chr12:65828043 [GRCh38]
Chr12:66221823 [GRCh37]
Chr12:12q14.3
uncertain significance
NC_000012.11:g.(?_64173741)_(68052493_?)del deletion Mucopolysaccharidosis, MPS-III-D [RCV004578369] Chr12:64173741..68052493 [GRCh37]
Chr12:12q14.2-15
pathogenic
NM_003483.6(HMGA2):c.179C>T (p.Pro60Leu) single nucleotide variant not provided [RCV004768229] Chr12:65828068 [GRCh38]
Chr12:66221848 [GRCh37]
Chr12:12q14.3
uncertain significance
miRNA Target Status

Confirmed Target Of
miRNA GeneMature miRNAMethod NameResult TypeData TypeSupport TypePMID
MIR98hsa-miR-98-5pMirtarbaseexternal_infoNorthern blot//qRT-PCR//Western blot;OtherFunctional MTI17222355
MIR98hsa-miR-98-5pMirtarbaseexternal_infoMicroarrayFunctional MTI (Weak)19088304
MIR98hsa-miR-98-3pTarbaseexternal_infoWesternblitPOSITIVE
MIR98hsa-miR-98-3pMirecordsexternal_info{changed}{changed}NA17222355
MIR26A1hsa-miR-26a-5pMirtarbaseexternal_infoLuciferase reporter assayFunctional MTI17563749
MIRLET7Bhsa-let-7b-5pMirtarbaseexternal_infoLuciferase reporter assay//qRT-PCRFunctional MTI17437991
MIRLET7Bhsa-let-7b-5pMirecordsexternal_info{changed}{changed}NA17437991
MIRLET7Bhsa-let-7b-5pOncomiRDBexternal_infoNANA23318420
MIRLET7Bhsa-let-7b-5pOncomiRDBexternal_infoNANA19153603
MIRLET7Bhsa-let-7b-5pOncomiRDBexternal_infoNANA18403645
MIRLET7Bhsa-let-7b-5pOncomiRDBexternal_infoNANA17600087
MIRLET7Bhsa-let-7b-5pOncomiRDBexternal_infoNANA17437991
MIRLET7Bhsa-let-7b-5pOncomiRDBexternal_infoNANA17322030
MIRLET7Dhsa-let-7d-5pMirtarbaseexternal_infoqRT-PCR//ChIP//Luciferase reporter assayFunctional MTI20395557
MIRLET7Dhsa-let-7d-5pMirtarbaseexternal_infoWestern blotFunctional MTI17957144
MIR125B1hsa-miR-125b-5pMirtarbaseexternal_infoLuciferase reporter assayFunctional MTI17563749
MIRLET7Dhsa-let-7d-5pOncomiRDBexternal_infoNANA23318420
MIRLET7Dhsa-let-7d-5pOncomiRDBexternal_infoNANA19153603
MIRLET7Dhsa-let-7d-5pOncomiRDBexternal_infoNANA18403645
MIRLET7Dhsa-let-7d-5pOncomiRDBexternal_infoNANA17600087
MIRLET7Dhsa-let-7d-5pOncomiRDBexternal_infoNANA17437991
MIRLET7Dhsa-let-7d-5pOncomiRDBexternal_infoNANA17322030
MIRLET7Ehsa-let-7e-5pMirtarbaseexternal_infoLuciferase reporter assay//qRT-PCRFunctional MTI17437991
MIRLET7Ehsa-let-7e-5pOncomiRDBexternal_infoNANA23318420
MIRLET7Ehsa-let-7e-5pOncomiRDBexternal_infoNANA19153603
MIRLET7Ehsa-let-7e-5pOncomiRDBexternal_infoNANA18403645
MIRLET7Ehsa-let-7e-5pOncomiRDBexternal_infoNANA17600087
MIRLET7Ehsa-let-7e-5pOncomiRDBexternal_infoNANA17437991
MIRLET7Ehsa-let-7e-5pOncomiRDBexternal_infoNANA17322030
MIRLET7Ehsa-let-7e-3pMirecordsexternal_info{changed}{changed}NA17437991
MIRLET7Chsa-let-7c-5pMirtarbaseexternal_infoqRT-PCR//Western blot//Luciferase reporter assayFunctional MTI17600087
MIRLET7Chsa-let-7c-5pMirtarbaseexternal_infoMicroarray//Northern blot//qRT-PCR//Western blotFunctional MTI17243163
MIRLET7Chsa-let-7c-5pMirtarbaseexternal_infoLuciferase reporter assay//qRT-PCR//Western blotFunctional MTI18403645
MIRLET7Chsa-let-7c-5pMirtarbaseexternal_infoCLASHFunctional MTI (Weak)23622248
MIRLET7Chsa-let-7c-5pOncomiRDBexternal_infoNANA23318420
MIRLET7Chsa-let-7c-5pOncomiRDBexternal_infoNANA19153603
MIRLET7Chsa-let-7c-5pOncomiRDBexternal_infoNANA18403645
MIRLET7Chsa-let-7c-5pOncomiRDBexternal_infoNANA17600087
MIRLET7Chsa-let-7c-5pOncomiRDBexternal_infoNANA17437991
MIRLET7Chsa-let-7c-5pOncomiRDBexternal_infoNANA17322030
MIRLET7Chsa-let-7c-3pMirecordsexternal_infoNANA18403645
MIRLET7Chsa-let-7c-3pMirecordsexternal_info{changed}NA17600087
MIRLET7A2hsa-let-7a-5pOncomiRDBexternal_infoNANA23318420
MIRLET7A2hsa-let-7a-5pOncomiRDBexternal_infoNANA19153603
MIRLET7A2hsa-let-7a-5pOncomiRDBexternal_infoNANA18403645
MIRLET7A2hsa-let-7a-5pOncomiRDBexternal_infoNANA17600087
MIRLET7A2hsa-let-7a-5pOncomiRDBexternal_infoNANA17437991
MIRLET7A2hsa-let-7a-5pOncomiRDBexternal_infoNANA17322030
MIR26A2hsa-miR-26a-5pMirtarbaseexternal_infoLuciferase reporter assayFunctional MTI17563749
MIRLET7F1hsa-let-7f-5pOncomiRDBexternal_infoNANA23318420
MIRLET7F1hsa-let-7f-5pOncomiRDBexternal_infoNANA18403645
MIRLET7F1hsa-let-7f-5pOncomiRDBexternal_infoNANA17600087
MIRLET7F1hsa-let-7f-5pOncomiRDBexternal_infoNANA19153603
MIRLET7F1hsa-let-7f-5pOncomiRDBexternal_infoNANA17437991
MIRLET7F1hsa-let-7f-5pOncomiRDBexternal_infoNANA17322030
MIR34Ahsa-miR-34a-5pMirtarbaseexternal_infoMicroarrayFunctional MTI (Weak)19461653
MIRLET7F2hsa-let-7f-5pOncomiRDBexternal_infoNANA23318420
MIRLET7F2hsa-let-7f-5pOncomiRDBexternal_infoNANA19153603
MIRLET7F2hsa-let-7f-5pOncomiRDBexternal_infoNANA18403645
MIRLET7F2hsa-let-7f-5pOncomiRDBexternal_infoNANA17600087
MIRLET7F2hsa-let-7f-5pOncomiRDBexternal_infoNANA17437991
MIRLET7F2hsa-let-7f-5pOncomiRDBexternal_infoNANA17322030
MIR34Ahsa-miR-34a-3pMirecordsexternal_info{changed}NA18803879
MIRLET7A2hsa-let-7a-5pMirtarbaseexternal_infoqRT-PCR//Western blot//Luciferase reporter assayFunctional MTI17600087
MIRLET7A2hsa-let-7a-5pMirtarbaseexternal_infoLuciferase reporter assayFunctional MTI18083101
MIRLET7A2hsa-let-7a-5pMirtarbaseexternal_infoLuciferase reporter assayFunctional MTI17322030
MIRLET7A2hsa-let-7a-5pMirtarbaseexternal_infoLuciferase reporter assayFunctional MTI18413822
MIRLET7A2hsa-let-7a-5pMirtarbaseexternal_infoLuciferase reporter assay//Western blot//qRT-PCRFunctional MTI19179606
MIRLET7Ghsa-let-7g-5pOncomiRDBexternal_infoNANA23318420
MIRLET7Ghsa-let-7g-5pOncomiRDBexternal_infoNANA19153603
MIRLET7Ghsa-let-7g-5pOncomiRDBexternal_infoNANA18403645
MIRLET7Ghsa-let-7g-5pOncomiRDBexternal_infoNANA18308936
MIRLET7Ghsa-let-7g-5pOncomiRDBexternal_infoNANA17600087
MIRLET7Ghsa-let-7g-5pOncomiRDBexternal_infoNANA17437991
MIRLET7Ghsa-let-7g-5pOncomiRDBexternal_infoNANA17322030
MIRLET7Ghsa-let-7g-3pMirecordsexternal_info{changed}NA17600087
MIRLET7Ihsa-let-7i-5pOncomiRDBexternal_infoNANA23318420
MIRLET7Ihsa-let-7i-5pOncomiRDBexternal_infoNANA19153603
MIRLET7Ihsa-let-7i-5pOncomiRDBexternal_infoNANA18403645
MIRLET7Ihsa-let-7i-5pOncomiRDBexternal_infoNANA17600087
MIRLET7Ihsa-let-7i-5pOncomiRDBexternal_infoNANA17437991
MIRLET7Ihsa-let-7i-5pOncomiRDBexternal_infoNANA17322030
MIR370hsa-miR-370-3pMirtarbaseexternal_infoLuciferase reporter assayNon-Functional MTI19179606
MIRLET7A1hsa-let-7a-5pMirtarbaseexternal_infoqRT-PCR//Western blot//Luciferase reporter assayFunctional MTI17600087
MIRLET7A1hsa-let-7a-5pMirtarbaseexternal_infoLuciferase reporter assayFunctional MTI18083101
MIRLET7A1hsa-let-7a-5pMirtarbaseexternal_infoLuciferase reporter assayFunctional MTI17322030
MIRLET7A1hsa-let-7a-5pMirtarbaseexternal_infoLuciferase reporter assayFunctional MTI18413822
MIRLET7A1hsa-let-7a-5pMirtarbaseexternal_infoLuciferase reporter assay//Western blot//qRT-PCRFunctional MTI19179606
MIRLET7A1hsa-let-7a-5pOncomiRDBexternal_infoNANA23318420
MIRLET7A1hsa-let-7a-5pOncomiRDBexternal_infoNANA19153603
MIRLET7A1hsa-let-7a-5pOncomiRDBexternal_infoNANA18403645
MIRLET7A1hsa-let-7a-5pOncomiRDBexternal_infoNANA17600087
MIRLET7A1hsa-let-7a-5pOncomiRDBexternal_infoNANA17437991
MIRLET7A1hsa-let-7a-5pOncomiRDBexternal_infoNANA17322030
MIR125B2hsa-miR-125b-5pMirtarbaseexternal_infoLuciferase reporter assayFunctional MTI17563749
MIRLET7Ghsa-let-7g-5pMirtarbaseexternal_infoWestern blot//Reporter assayFunctional MTI18413726
MIRLET7Ghsa-let-7g-5pMirtarbaseexternal_infoLuciferase reporter assayFunctional MTI17600087

Predicted Target Of
Summary Value
Count of predictions:5399
Count of miRNA genes:1375
Interacting mature miRNAs:1850
Transcripts:ENST00000354636, ENST00000393577, ENST00000393578, ENST00000403681, ENST00000425208, ENST00000536545, ENST00000537275, ENST00000537429, ENST00000539662, ENST00000541363, ENST00000545998
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
407040834GWAS689810_Hhip circumference QTL GWAS689810 (human)4e-08hip circumferencehip circumference (CMO:0000014)126595804665958047Human
406949185GWAS598161_HBMI-adjusted hip circumference QTL GWAS598161 (human)0.0000008BMI-adjusted hip circumferencehip circumference (CMO:0000014)126595804665958047Human
407029825GWAS678801_Hvital capacity QTL GWAS678801 (human)1e-63vital capacity126596597265965973Human
407081541GWAS730517_Hbody height QTL GWAS730517 (human)5e-90body height (VT:0001253)body height (CMO:0000106)126596597265965973Human
407088964GWAS737940_Hintelligence QTL GWAS737940 (human)0.000007intelligence126584295565842956Human
407048004GWAS696980_Hcortical surface area measurement QTL GWAS696980 (human)8e-16cerebral cortex morphology trait (VT:0000788)tibia-fibula cortical bone total cross-sectional area (CMO:0001721)126596597265965973Human
407019082GWAS668058_Hbody height QTL GWAS668058 (human)2e-09body height (VT:0001253)body height (CMO:0000106)126591266165912662Human
406909515GWAS558491_Hbody height QTL GWAS558491 (human)9e-11body height (VT:0001253)body height (CMO:0000106)126595293465952935Human
407047248GWAS696224_Hsexual dimorphism measurement QTL GWAS696224 (human)7e-10sexual dimorphism measurement126593347465933475Human
407337811GWAS986787_Hneutrophil count QTL GWAS986787 (human)9e-13neutrophil quantity (VT:0000222)blood neutrophil count (CMO:0000030)126596597265965973Human
407114335GWAS763311_Hprotein measurement QTL GWAS763311 (human)2e-11protein measurement126593109965931100Human
407330652GWAS979628_Hinsomnia QTL GWAS979628 (human)4e-08insomnia126593424765934248Human
407260506GWAS909482_Hbody height QTL GWAS909482 (human)3e-08body height (VT:0001253)body height (CMO:0000106)126595603265956033Human
407043679GWAS692655_Hintracranial volume measurement QTL GWAS692655 (human)1e-12intracranial volume measurement126595003065950031Human
407338073GWAS987049_Hhemoglobin A1 measurement QTL GWAS987049 (human)4e-19hemoglobin A1 measurement126582728065827281Human
407267161GWAS916137_Hsex hormone-binding globulin measurement QTL GWAS916137 (human)2e-09sex hormone-binding globulin measurement126596597265965973Human
407127908GWAS776884_Hodontogenesis QTL GWAS776884 (human)1e-10odontogenesis126594442265944423Human
407012704GWAS661680_Hplatelet count QTL GWAS661680 (human)7e-13platelet quantity (VT:0003179)platelet count (CMO:0000029)126592785365927854Human
407059808GWAS708784_Hbody height QTL GWAS708784 (human)2e-65body height (VT:0001253)body height (CMO:0000106)126595804665958047Human
407356259GWAS1005235_HBMI-adjusted hip circumference QTL GWAS1005235 (human)2e-08BMI-adjusted hip circumferencehip circumference (CMO:0000014)126596011165960112Human
406939495GWAS588471_Hleft atrial volume measurement QTL GWAS588471 (human)1e-08heart left atrium capacity (VT:0004063)left atrium volume (CMO:0000337)126594962065949621Human
407249518GWAS898494_Hforehead morphology measurement QTL GWAS898494 (human)5e-09forehead morphology measurement126593758565937586Human
406957417GWAS606393_Hadverse effect, response to xenobiotic stimulus QTL GWAS606393 (human)0.0000002adverse effect, response to xenobiotic stimulus126595011465950115Human
407048811GWAS697787_Hcortical surface area measurement QTL GWAS697787 (human)4e-17cerebral cortex morphology trait (VT:0000788)tibia-fibula cortical bone total cross-sectional area (CMO:0001721)126596597265965973Human
406976360GWAS625336_Hcorneal topography QTL GWAS625336 (human)9e-47corneal topography126595358865953589Human
407008363GWAS657339_Hsex hormone-binding globulin measurement QTL GWAS657339 (human)8e-25sex hormone-binding globulin measurement126596456765964568Human
407026024GWAS675000_Hbody height QTL GWAS675000 (human)0.0000004body height (VT:0001253)body height (CMO:0000106)126596597265965973Human
407347564GWAS996540_Hsystolic blood pressure QTL GWAS996540 (human)2e-10systolic blood pressuresystolic blood pressure (CMO:0000004)126596456765964568Human
407179371GWAS828347_Hbody height QTL GWAS828347 (human)5e-08body height (VT:0001253)body height (CMO:0000106)126585323065853231Human
407127914GWAS776890_Htooth eruption QTL GWAS776890 (human)6e-11tooth eruption126594442265944423Human
407145067GWAS794043_Htype 2 diabetes mellitus QTL GWAS794043 (human)9e-09type 2 diabetes mellitus126585716065857161Human
406952558GWAS601534_Hwellbeing measurement QTL GWAS601534 (human)0.0000009wellbeing measurement126591266165912662Human
407164779GWAS813755_Hcataract QTL GWAS813755 (human)1e-09cataract126594962065949621Human
406989424GWAS638400_Hbody height QTL GWAS638400 (human)3e-10body height (VT:0001253)body height (CMO:0000106)126596456765964568Human
407145072GWAS794048_Htype 2 diabetes mellitus QTL GWAS794048 (human)3e-12type 2 diabetes mellitus126585716065857161Human
406995574GWAS644550_Hbody height QTL GWAS644550 (human)1e-11body height (VT:0001253)body height (CMO:0000106)126595804665958047Human
407050614GWAS699590_Hbody height QTL GWAS699590 (human)7e-10body height (VT:0001253)body height (CMO:0000106)126583347765833478Human
407249523GWAS898499_Hfacial morphology measurement QTL GWAS898499 (human)2e-08facial morphology measurement126593758565937586Human
407009143GWAS658119_Henergy expenditure measurement QTL GWAS658119 (human)4e-08energy expenditure measurement126596011165960112Human
406974324GWAS623300_Hforced expiratory volume QTL GWAS623300 (human)8e-58forced expiratory volumeforced expiratory volume (CMO:0000254)126596597265965973Human
407039349GWAS688325_Hbirth weight QTL GWAS688325 (human)1e-19birth weightneonatal body weight (CMO:0002079)126596456765964568Human
407117437GWAS766413_Hsexual dimorphism measurement QTL GWAS766413 (human)1e-15sexual dimorphism measurement126595358865953589Human
407116670GWAS765646_Hsexual dimorphism measurement QTL GWAS765646 (human)5e-10sexual dimorphism measurement126593190965931910Human
407009144GWAS658120_Henergy expenditure measurement QTL GWAS658120 (human)0.0000002energy expenditure measurement126596011165960112Human
407249528GWAS898504_Hfacial morphology measurement QTL GWAS898504 (human)8e-10facial morphology measurement126593758565937586Human
407050876GWAS699852_Hsexual dimorphism measurement QTL GWAS699852 (human)7e-13sexual dimorphism measurement126593424765934248Human
406925056GWAS574032_Hbody height QTL GWAS574032 (human)1e-140body height (VT:0001253)body height (CMO:0000106)126596597265965973Human
407205632GWAS854608_Hinsulin measurement QTL GWAS854608 (human)3e-09pulse pressure measurementpulse pressure (CMO:0000292)126595804665958047Human
406923782GWAS572758_Hbody weight QTL GWAS572758 (human)2e-08body mass (VT:0001259)red blood cell count (CMO:0000025)126585851465858515Human
407238925GWAS887901_Hbody height QTL GWAS887901 (human)4e-223body height (VT:0001253)body height (CMO:0000106)126585327165853272Human
406910475GWAS559451_Hcreatinine measurement QTL GWAS559451 (human)1e-09creatinine measurementblood creatinine measurement (CMO:0000767)126584550565845506Human
406999055GWAS648031_Hsex hormone-binding globulin measurement QTL GWAS648031 (human)6e-08sex hormone-binding globulin measurement126595804665958047Human
407238923GWAS887899_Hbody height QTL GWAS887899 (human)6e-30body height (VT:0001253)body height (CMO:0000106)126584759265847593Human
407164180GWAS813156_Hcortical thickness QTL GWAS813156 (human)5e-11cortical thickness126596597265965973Human
407051538GWAS700514_Hcortical surface area measurement QTL GWAS700514 (human)7e-15cerebral cortex morphology trait (VT:0000788)tibia-fibula cortical bone total cross-sectional area (CMO:0001721)126596597265965973Human
407239191GWAS888167_Hbody height QTL GWAS888167 (human)2e-27body height (VT:0001253)body height (CMO:0000106)126592565365925654Human
406907418GWAS556394_Hbody height QTL GWAS556394 (human)3e-18body height (VT:0001253)body height (CMO:0000106)126596597265965973Human
406991129GWAS640105_Hsex hormone-binding globulin measurement QTL GWAS640105 (human)2e-13cerebral cortex morphology trait (VT:0000788)tibia-fibula cortical bone total cross-sectional area (CMO:0001721)126596597265965973Human
407051294GWAS700270_Hsexual dimorphism measurement QTL GWAS700270 (human)2e-22sexual dimorphism measurement126595358865953589Human
406949407GWAS598383_HBMI-adjusted hip circumference QTL GWAS598383 (human)2e-08BMI-adjusted hip circumferencehip circumference (CMO:0000014)126595804665958047Human
406989596GWAS638572_Hbirth weight, parental genotype effect measurement QTL GWAS638572 (human)1e-19birth weight, parental genotype effect measurementneonatal body weight (CMO:0002079)126596597265965973Human
406925086GWAS574062_Happendicular lean mass QTL GWAS574062 (human)1e-14appendicular lean mass126596456765964568Human
407239205GWAS888181_Hbody height QTL GWAS888181 (human)2e-13body height (VT:0001253)body height (CMO:0000106)126590179065901791Human
407330342GWAS979318_Hbody weight QTL GWAS979318 (human)1e-34body mass (VT:0001259)body weight (CMO:0000012)126595358865953589Human
407020577GWAS669553_Hbody height QTL GWAS669553 (human)2e-16body height (VT:0001253)body height (CMO:0000106)126596597265965973Human
406953767GWAS602743_Hvital capacity QTL GWAS602743 (human)5e-08vital capacity126594465165944652Human
407049765GWAS698741_Hbody height QTL GWAS698741 (human)0.0000002body height (VT:0001253)body height (CMO:0000106)126596456765964568Human
407309615GWAS958591_Htriglyceride measurement QTL GWAS958591 (human)9e-09triglyceride measurementblood triglyceride level (CMO:0000118)126596597265965973Human
407346734GWAS995710_HInguinal hernia QTL GWAS995710 (human)2e-11Inguinal hernia126593424765934248Human
407341613GWAS990589_HInguinal hernia QTL GWAS990589 (human)2e-11Inguinal hernia126592709365927094Human
407000878GWAS649854_Hsystolic blood pressure QTL GWAS649854 (human)7e-10systolic blood pressuresystolic blood pressure (CMO:0000004)126595003065950031Human
407033390GWAS682366_Hopen-angle glaucoma QTL GWAS682366 (human)1e-08open-angle glaucoma126595003065950031Human
407020334GWAS669310_Hbody height QTL GWAS669310 (human)3e-18body height (VT:0001253)body height (CMO:0000106)126596456765964568Human
407241514GWAS890490_Hmelanoma QTL GWAS890490 (human)0.000004sex hormone-binding globulin measurement126596597265965973Human
406936111GWAS585087_Hnumber of teeth measurement QTL GWAS585087 (human)3e-11number of teeth measurement126594442265944423Human
407100205GWAS749181_Hleukocyte count QTL GWAS749181 (human)3e-16leukocyte quantity (VT:0000217)white blood cell count (CMO:0000027)126596456765964568Human
407201322GWAS850298_Happendicular lean mass QTL GWAS850298 (human)2e-23appendicular lean mass126584609465846095Human
406929454GWAS578430_Happendicular lean mass QTL GWAS578430 (human)7e-12appendicular lean mass126595003065950031Human
407307048GWAS956024_Hlean body mass QTL GWAS956024 (human)3e-85body lean mass (VT:0010483)total body lean mass (CMO:0003950)126595804665958047Human
406986797GWAS635773_Hsex hormone-binding globulin measurement QTL GWAS635773 (human)4e-11sex hormone-binding globulin measurement126595804665958047Human
406921008GWAS569984_Htriglyceride measurement QTL GWAS569984 (human)5e-11triglyceride measurementblood triglyceride level (CMO:0000118)126595804665958047Human
407336502GWAS985478_Htriglyceride measurement QTL GWAS985478 (human)5e-09triglyceride measurementblood triglyceride level (CMO:0000118)126595804665958047Human
406948659GWAS597635_HBMI-adjusted hip circumference QTL GWAS597635 (human)5e-13BMI-adjusted hip circumferencehip circumference (CMO:0000014)126595804665958047Human
406933554GWAS582530_Hheel bone mineral density QTL GWAS582530 (human)8e-25heel bone mineral densitybone mineral density (CMO:0001226)126595435465954355Human
406966322GWAS615298_Hbody height at birth QTL GWAS615298 (human)0.0000007body height at birthbody height (CMO:0000106)126595804665958047Human
407224113GWAS873089_Hhip circumference QTL GWAS873089 (human)4e-08hip circumferencehip circumference (CMO:0000014)126586122565861226Human
407176243GWAS825219_Htype 2 diabetes mellitus QTL GWAS825219 (human)7e-29type 2 diabetes mellitus126586122565861226Human
406922809GWAS571785_Hbrain volume measurement QTL GWAS571785 (human)7e-14brain volume measurementbrain morphological measurement (CMO:0000136)126596597265965973Human
406894909GWAS543885_Hbody surface area QTL GWAS543885 (human)1e-72body surface area126595804665958047Human
407000259GWAS649235_Hpulse pressure measurement QTL GWAS649235 (human)1e-13pulse pressure measurementpulse pressure (CMO:0000292)126595003065950031Human
406991553GWAS640529_Hbody height QTL GWAS640529 (human)2e-08body height (VT:0001253)body height (CMO:0000106)126583347765833478Human
407058373GWAS707349_Hheel bone mineral density QTL GWAS707349 (human)2e-23heel bone mineral densitybone mineral density (CMO:0001226)126595435465954355Human
407026117GWAS675093_Hbody height QTL GWAS675093 (human)5e-14body height (VT:0001253)body height (CMO:0000106)126596597265965973Human
407298510GWAS947486_Htype 2 diabetes mellitus QTL GWAS947486 (human)2e-08type 2 diabetes mellitus126593316365933164Human
406923208GWAS572184_Hbirth weight QTL GWAS572184 (human)2e-33birth weightneonatal body weight (CMO:0002079)126596456765964568Human
407224273GWAS873249_HBMI-adjusted hip circumference QTL GWAS873249 (human)1e-16BMI-adjusted hip circumferencehip circumference (CMO:0000014)126593424765934248Human
407224275GWAS873251_HBMI-adjusted hip circumference QTL GWAS873251 (human)3e-18BMI-adjusted hip circumferencehip circumference (CMO:0000014)126595358865953589Human
406941401GWAS590377_Hcortical surface area measurement QTL GWAS590377 (human)2e-25cerebral cortex morphology trait (VT:0000788)tibia-fibula cortical bone total cross-sectional area (CMO:0001721)126593385265933853Human
406993627GWAS642603_Hsex hormone-binding globulin measurement QTL GWAS642603 (human)9e-11sex hormone-binding globulin measurement126596597265965973Human
407013598GWAS662574_Hbody height QTL GWAS662574 (human)5e-31body height (VT:0001253)body height (CMO:0000106)126584295565842956Human
407034334GWAS683310_Hheel bone mineral density QTL GWAS683310 (human)9e-25heel bone mineral densitybone mineral density (CMO:0001226)126595435465954355Human
407022812GWAS671788_Hbody height QTL GWAS671788 (human)7e-32body height (VT:0001253)body height (CMO:0000106)126595804665958047Human
407049442GWAS698418_Hcortical surface area measurement QTL GWAS698418 (human)1e-12cerebral cortex morphology trait (VT:0000788)tibia-fibula cortical bone total cross-sectional area (CMO:0001721)126596597265965973Human
407013601GWAS662577_Hbody height QTL GWAS662577 (human)5e-39body height (VT:0001253)body height (CMO:0000106)126595603265956033Human
407071975GWAS720951_Hanthropometric measurement QTL GWAS720951 (human)4e-08anthropometric measurementbody morphological measurement (CMO:0000021)126593385265933853Human
407045095GWAS694071_Hbody composition measurement QTL GWAS694071 (human)2e-15body composition measurement126596597265965973Human
407043045GWAS692021_Hpolycystic ovary syndrome QTL GWAS692021 (human)2e-21polycystic ovary syndrome126583068165830682Human
406951915GWAS600891_Hwellbeing measurement QTL GWAS600891 (human)0.000005wellbeing measurement126591266165912662Human
406922732GWAS571708_Hbody height QTL GWAS571708 (human)1e-33body height (VT:0001253)body height (CMO:0000106)126595603265956033Human
407157236GWAS806212_Htype 2 diabetes mellitus QTL GWAS806212 (human)5e-21type 2 diabetes mellitus126582728065827281Human
407042034GWAS691010_Hhip circumference QTL GWAS691010 (human)6e-11hip circumferencehip circumference (CMO:0000014)126595804665958047Human
407157237GWAS806213_Htype 2 diabetes mellitus QTL GWAS806213 (human)2e-13type 2 diabetes mellitus126596456765964568Human
407010039GWAS659015_Hlifestyle measurement QTL GWAS659015 (human)5e-10lifestyle measurement126596597265965973Human
407146227GWAS795203_Hlate-onset Alzheimers disease QTL GWAS795203 (human)0.000002late-onset Alzheimers disease126585951965859520Human
406985467GWAS634443_Hleft ventricular mass QTL GWAS634443 (human)2e-09left ventricular masscalculated heart left ventricle weight (CMO:0001123)126593385265933853Human
407413236GWAS1062212_Hbody height QTL GWAS1062212 (human)2e-53body height (VT:0001253)body height (CMO:0000106)126585327165853272Human
407324152GWAS973128_Hbody height QTL GWAS973128 (human)2e-141body height (VT:0001253)body height (CMO:0000106)126596597265965973Human
406991613GWAS640589_Hbody height QTL GWAS640589 (human)3e-12body height (VT:0001253)heart rate (CMO:0000002)126596597265965973Human
407362181GWAS1011157_Htype 2 diabetes mellitus QTL GWAS1011157 (human)1e-12type 2 diabetes mellitus126582728065827281Human
407270799GWAS919775_Htype 2 diabetes mellitus QTL GWAS919775 (human)5e-16type 2 diabetes mellitus126583903065839031Human
407337612GWAS986588_HBMI-adjusted hip circumference QTL GWAS986588 (human)3e-15BMI-adjusted hip circumferencehip circumference (CMO:0000014)126595804665958047Human
406924941GWAS573917_Hbody height QTL GWAS573917 (human)7e-103body height (VT:0001253)body height (CMO:0000106)126584811865848119Human
407202697GWAS851673_Hfacial morphology measurement QTL GWAS851673 (human)6e-12facial morphology measurement126592709365927094Human
407214729GWAS863705_Hbody height QTL GWAS863705 (human)3e-10body height (VT:0001253)body height (CMO:0000106)126594962065949621Human
406931085GWAS580061_Hbody height at birth QTL GWAS580061 (human)2e-29body height at birthbody height (CMO:0000106)126596456765964568Human
407235976GWAS884952_Hbody height QTL GWAS884952 (human)2e-39body height (VT:0001253)body height (CMO:0000106)126583068165830682Human
406988431GWAS637407_Hsmoking cessation QTL GWAS637407 (human)1e-09smoking cessation126596597265965973Human
406924942GWAS573918_Hbody height QTL GWAS573918 (human)1e-300body height (VT:0001253)body height (CMO:0000106)126596597265965973Human
407282569GWAS931545_Hbrain measurement QTL GWAS931545 (human)7e-21brain measurementbrain measurement (CMO:0000911)126596597265965973Human
407214730GWAS863706_Hbody height QTL GWAS863706 (human)5e-12body height (VT:0001253)body height (CMO:0000106)126596597265965973Human
407005074GWAS654050_Hneutrophil count QTL GWAS654050 (human)3e-11neutrophil quantity (VT:0000222)blood neutrophil count (CMO:0000030)126596456765964568Human
407180951GWAS829927_Hupper face morphology measurement QTL GWAS829927 (human)2e-15facial morphology trait (VT:0003743)126592756465927565Human
407249044GWAS898020_Hcorneal resistance factor QTL GWAS898020 (human)7e-09corneal resistance factor126596456765964568Human
407120023GWAS768999_Hsexual dimorphism measurement QTL GWAS768999 (human)6e-16sexual dimorphism measurement126592709365927094Human
406935189GWAS584165_Htotal cortical area measurement QTL GWAS584165 (human)3e-09total cortical area measurement126593190965931910Human
406935188GWAS584164_Htotal cortical area measurement QTL GWAS584164 (human)2e-08wellbeing measurement126591266165912662Human
406931092GWAS580068_Hinfant head circumference QTL GWAS580068 (human)9e-22infant head circumference126596456765964568Human
407020180GWAS669156_Hbody height QTL GWAS669156 (human)3e-20body height (VT:0001253)body height (CMO:0000106)126596456765964568Human
407305361GWAS954337_Hfat body mass QTL GWAS954337 (human)8e-11body fat mass (VT:0010482)total body fat mass (CMO:0000305)126593385265933853Human
407160988GWAS809964_HFEV/FVC ratio, response to bronchodilator QTL GWAS809964 (human)0.000005FEV/FVC ratio, response to bronchodilatorforced expiratory volume to forced vital capacity ratio (CMO:0000241)126586261565862616Human
407012765GWAS661741_HDrugs used in diabetes use measurement QTL GWAS661741 (human)3e-09Drugs used in diabetes use measurement126582728065827281Human
407177370GWAS826346_Htype 2 diabetes mellitus QTL GWAS826346 (human)2e-16type 2 diabetes mellitus126586122565861226Human
407179930GWAS828906_Htype 2 diabetes mellitus QTL GWAS828906 (human)2e-13type 2 diabetes mellitus126586122565861226Human
407175322GWAS824298_Hcolor vision disorder QTL GWAS824298 (human)0.00001color vision disorder126591150565911506Human
406986141GWAS635117_Hbrain volume measurement QTL GWAS635117 (human)7e-11brain volume measurementbrain morphological measurement (CMO:0000136)126596456765964568Human
406930334GWAS579310_Hsmoking cessation QTL GWAS579310 (human)4e-09sex hormone-binding globulin measurement126596597265965973Human
406975395GWAS624371_Hcorneal topography QTL GWAS624371 (human)3e-16corneal topography126595358865953589Human
407250848GWAS899824_Htotal cholesterol measurement QTL GWAS899824 (human)1e-08total cholesterol measurementblood total cholesterol level (CMO:0000051)126586714465867145Human
407008164GWAS657140_Hsex hormone-binding globulin measurement QTL GWAS657140 (human)4e-19sex hormone-binding globulin measurement126596456765964568Human
407177645GWAS826621_Htype 2 diabetes mellitus QTL GWAS826621 (human)0.000003type 2 diabetes mellitus126586122565861226Human
407019690GWAS668666_Hbody height QTL GWAS668666 (human)6e-54body height (VT:0001253)body height (CMO:0000106)126586819765868198Human
407019691GWAS668667_Hbody height QTL GWAS668667 (human)1e-52body height (VT:0001253)body height (CMO:0000106)126596597265965973Human
407107759GWAS756735_Hbody height QTL GWAS756735 (human)2e-12body height (VT:0001253)body height (CMO:0000106)126592443765924438Human
407059887GWAS708863_Hsystolic blood pressure QTL GWAS708863 (human)9e-08systolic blood pressuresystolic blood pressure (CMO:0000004)126593385265933853Human
406961326GWAS610302_HInguinal hernia QTL GWAS610302 (human)3e-09Inguinal hernia126593424765934248Human
407195575GWAS844551_Hglomerular filtration rate QTL GWAS844551 (human)2e-11glomerular filtration rateglomerular filtration rate (CMO:0000490)126592370765923708Human
407043766GWAS692742_Hplatelet count QTL GWAS692742 (human)4e-11platelet quantity (VT:0003179)platelet count (CMO:0000029)126592785365927854Human
407339443GWAS988419_Hpulse pressure measurement QTL GWAS988419 (human)4e-11pulse pressure measurementpulse pressure (CMO:0000292)126593316365933164Human
407050933GWAS699909_Hcortical surface area measurement QTL GWAS699909 (human)9e-17cerebral cortex morphology trait (VT:0000788)tibia-fibula cortical bone total cross-sectional area (CMO:0001721)126596597265965973Human
407317937GWAS966913_Hcortical thickness QTL GWAS966913 (human)6e-13cortical thickness126596597265965973Human
407045304GWAS694280_Hcortical surface area measurement QTL GWAS694280 (human)4e-12cerebral cortex morphology trait (VT:0000788)tibia-fibula cortical bone total cross-sectional area (CMO:0001721)126596597265965973Human
406888892GWAS537868_Hbirth weight QTL GWAS537868 (human)2e-33birth weightneonatal body weight (CMO:0002079)126595804665958047Human
407326138GWAS975114_Hcortical surface area measurement QTL GWAS975114 (human)1e-14cerebral cortex morphology trait (VT:0000788)tibia-fibula cortical bone total cross-sectional area (CMO:0001721)126596597265965973Human
407022780GWAS671756_Hbody height QTL GWAS671756 (human)6e-16body height (VT:0001253)body height (CMO:0000106)126596456765964568Human
407304377GWAS953353_Hlean body mass QTL GWAS953353 (human)6e-32body lean mass (VT:0010483)total body lean mass (CMO:0003950)126589055665890557Human
407012541GWAS661517_Hbody height QTL GWAS661517 (human)3e-16body height (VT:0001253)body height (CMO:0000106)126596597265965973Human

Markers in Region
D12S1511  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371266,272,874 - 66,273,076UniSTSGRCh37
Build 361264,559,141 - 64,559,343RGDNCBI36
Celera1265,938,789 - 65,938,991RGD
Cytogenetic Map12q14.3UniSTS
Cytogenetic Map12q15UniSTS
HuRef1263,325,887 - 63,326,089UniSTS
RH48124  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371266,357,861 - 66,358,035UniSTSGRCh37
Build 361264,644,128 - 64,644,302RGDNCBI36
Celera1266,023,692 - 66,023,866RGD
Cytogenetic Map12q15UniSTS
HuRef1263,410,876 - 63,411,050UniSTS
GeneMap99-GB4 RH Map12282.93UniSTS
RH69419  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371266,359,775 - 66,359,938UniSTSGRCh37
Build 361264,646,042 - 64,646,205RGDNCBI36
Celera1266,025,606 - 66,025,769RGD
Cytogenetic Map12q15UniSTS
HuRef1263,412,790 - 63,412,953UniSTS
GeneMap99-GB4 RH Map12277.77UniSTS
D12S1549  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371266,329,373 - 66,329,603UniSTSGRCh37
Build 361264,615,640 - 64,615,870RGDNCBI36
Celera1265,995,205 - 65,995,435RGD
Cytogenetic Map12q15UniSTS
HuRef1263,382,389 - 63,382,619UniSTS
D12S1550  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371266,236,640 - 66,236,966UniSTSGRCh37
Build 361264,522,907 - 64,523,233RGDNCBI36
Celera1265,902,246 - 65,902,572RGD
Cytogenetic Map12q15UniSTS
HuRef1263,289,636 - 63,289,962UniSTS
D12S1552  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371266,360,371 - 66,360,560UniSTSGRCh37
Build 361264,646,638 - 64,646,827RGDNCBI36
Celera1266,026,202 - 66,026,391RGD
Cytogenetic Map12q15UniSTS
HuRef1263,413,386 - 63,413,575UniSTS
D12S1556  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371266,274,862 - 66,275,323UniSTSGRCh37
Build 361264,561,129 - 64,561,590RGDNCBI36
Celera1265,940,777 - 65,941,238RGD
Cytogenetic Map12q14.3UniSTS
Cytogenetic Map12q15UniSTS
HuRef1263,327,875 - 63,328,336UniSTS
D12S1557  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371266,247,820 - 66,248,171UniSTSGRCh37
Build 361264,534,087 - 64,534,438RGDNCBI36
Celera1265,913,422 - 65,913,773RGD
Cytogenetic Map12q15UniSTS
HuRef1263,300,814 - 63,301,165UniSTS
D12S1561  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371266,298,863 - 66,298,955UniSTSGRCh37
Build 361264,585,130 - 64,585,222RGDNCBI36
Celera1265,964,694 - 65,964,786RGD
Cytogenetic Map12q15UniSTS
HuRef1263,351,876 - 63,351,968UniSTS
D12S1562  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371266,331,940 - 66,332,275UniSTSGRCh37
Build 361264,618,207 - 64,618,542RGDNCBI36
Celera1265,997,772 - 65,998,107RGD
Cytogenetic Map12q15UniSTS
HuRef1263,384,956 - 63,385,291UniSTS
SHGC-146271  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371266,354,697 - 66,355,017UniSTSGRCh37
Build 361264,640,964 - 64,641,284RGDNCBI36
Celera1266,020,529 - 66,020,849RGD
Cytogenetic Map12q15UniSTS
HuRef1263,407,714 - 63,408,034UniSTS
TNG Radiation Hybrid Map124349.0UniSTS
SHGC-146550  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371266,303,980 - 66,304,328UniSTSGRCh37
Build 361264,590,247 - 64,590,595RGDNCBI36
Celera1265,969,812 - 65,970,160RGD
Cytogenetic Map12q15UniSTS
HuRef1263,356,995 - 63,357,343UniSTS
TNG Radiation Hybrid Map124381.0UniSTS
D12S1521  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371266,261,619 - 66,261,954UniSTSGRCh37
Build 361264,547,886 - 64,548,221RGDNCBI36
Celera1265,927,230 - 65,927,565RGD
Cytogenetic Map12q14.3UniSTS
Cytogenetic Map12q15UniSTS
HuRef1263,314,622 - 63,314,957UniSTS
STS-L44578  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371266,345,186 - 66,345,341UniSTSGRCh37
GRCh371266,345,186 - 66,345,340UniSTSGRCh37
Build 361264,631,453 - 64,631,607RGDNCBI36
Celera1266,011,018 - 66,011,173UniSTS
Celera1266,011,018 - 66,011,172RGD
Cytogenetic Map12q15UniSTS
HuRef1263,398,203 - 63,398,358UniSTS
GeneMap99-GB4 RH Map12278.42UniSTS
D12S1509  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371266,322,852 - 66,323,346UniSTSGRCh37
Build 361264,609,119 - 64,609,613RGDNCBI36
Celera1265,988,684 - 65,989,178RGD
Cytogenetic Map12q15UniSTS
HuRef1263,375,868 - 63,376,362UniSTS
D12S1523  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371266,284,096 - 66,284,471UniSTSGRCh37
Build 361264,570,363 - 64,570,738RGDNCBI36
Celera1265,949,927 - 65,950,302RGD
Cytogenetic Map12q15UniSTS
HuRef1263,337,108 - 63,337,483UniSTS
HMGA2_3902  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371266,359,161 - 66,360,069UniSTSGRCh37
Build 361264,645,428 - 64,646,336RGDNCBI36
Celera1266,024,992 - 66,025,900RGD
HuRef1263,412,176 - 63,413,084UniSTS
D8S2279  
Human AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map21q22.12UniSTS
Cytogenetic Map15q13UniSTS
Cytogenetic Map9q32UniSTS
Cytogenetic Map15q22.3UniSTS
Cytogenetic Map17p12UniSTS
Cytogenetic Map21q21.3UniSTS
Cytogenetic Map3p22-p21.3UniSTS
Cytogenetic Map1q21.1UniSTS
Cytogenetic Map2q24.2UniSTS
Cytogenetic Map17q24.2UniSTS
Cytogenetic Map1q32UniSTS
Cytogenetic Map3p25.3UniSTS
Cytogenetic Map20q13.3UniSTS
Cytogenetic Map2q31.1UniSTS
Cytogenetic Map1q21UniSTS
Cytogenetic Map3p14.1UniSTS
Cytogenetic Map2q37.3UniSTS
Cytogenetic Map7p14.1UniSTS
Cytogenetic Map2q22.3UniSTS
Cytogenetic Map15q13.2UniSTS
Cytogenetic Map12q24.1UniSTS
Cytogenetic Map7p15.2UniSTS
Cytogenetic Map5q31.2UniSTS
Cytogenetic Map2p25.2UniSTS
Cytogenetic Map3p24.3UniSTS
Cytogenetic Map17q25.3UniSTS
Cytogenetic Map15q22.31UniSTS
Cytogenetic Map5q14UniSTS
Cytogenetic Map5q31UniSTS
Cytogenetic Map1p36.32UniSTS
Cytogenetic Map1q42.12UniSTS
Cytogenetic Map7q21.11UniSTS
Cytogenetic Map9q34.2UniSTS
Cytogenetic Map19q13.3UniSTS
Cytogenetic Map22q13.33UniSTS
Cytogenetic Map8q22.3UniSTS
Cytogenetic Map6p21.1-p12UniSTS
Cytogenetic Map1p36.13UniSTS
Cytogenetic Map7q36.3UniSTS
Cytogenetic Map2p25.1UniSTS
Cytogenetic Map7p21.3UniSTS
Cytogenetic Map4q12UniSTS
Cytogenetic Map22q11.22UniSTS
Cytogenetic Map11p13UniSTS
Cytogenetic Map1q12UniSTS
Cytogenetic Map8p23UniSTS
Cytogenetic Map11q13.2-q13.3UniSTS
Cytogenetic Map13q14.1-q14.3UniSTS
Cytogenetic Map3q22-q24UniSTS
Cytogenetic Map3q13.1-q13.2UniSTS
Cytogenetic Map16q24UniSTS
Cytogenetic Map5q23.3-q31.1UniSTS
Cytogenetic Map8p21.3UniSTS
Cytogenetic Map14q32.3UniSTS
Cytogenetic Map7q11.23UniSTS
Cytogenetic Map7q32UniSTS
Cytogenetic Map14q32.33UniSTS
Cytogenetic Map19p13.2UniSTS
Cytogenetic Map9q34.3UniSTS
Cytogenetic Map1p32.3UniSTS
Cytogenetic Map17q11UniSTS
Cytogenetic Map17p13.1-p12UniSTS
Cytogenetic Map18q21.33UniSTS
Cytogenetic Map19p13.12UniSTS
Cytogenetic Map5q14.1UniSTS
Cytogenetic Map14q24.3UniSTS
Cytogenetic Map1q21-q23UniSTS
Cytogenetic MapXp11.23UniSTS
Cytogenetic Map4q21.1UniSTS
Cytogenetic Map12q13.13UniSTS
Cytogenetic Map14q23.3UniSTS
Cytogenetic Map17p12-p11.2UniSTS
Cytogenetic Map6p21.1UniSTS
Cytogenetic Map1q24UniSTS
Cytogenetic Map1q43UniSTS
Cytogenetic Map9q34.13UniSTS
Cytogenetic Map19q13.4UniSTS
Cytogenetic Map2q32UniSTS
Cytogenetic MapXp22.2UniSTS
Cytogenetic Map19p13.11UniSTS
Cytogenetic Map2q33UniSTS
Cytogenetic Map10p13UniSTS
Cytogenetic Map2q11.2UniSTS
Cytogenetic Map3q27UniSTS
Cytogenetic Map17q25.1UniSTS
Cytogenetic Map4p16.1UniSTS
Cytogenetic Map14q22.3UniSTS
Cytogenetic Map10q23-q24UniSTS
Cytogenetic Map2q37.1UniSTS
Cytogenetic Map17q12UniSTS
Cytogenetic Map14q31-q32UniSTS
Cytogenetic Map5p15.33UniSTS
Cytogenetic Map1q23.2UniSTS
Cytogenetic Map16q24.3UniSTS
Cytogenetic Map4p14UniSTS
Cytogenetic Map2q32.3UniSTS
Cytogenetic Map15q21.1UniSTS
Cytogenetic Map4q32.2UniSTS
Cytogenetic Map10q23UniSTS
Cytogenetic Map5q14.2UniSTS
Cytogenetic Map4q32.1UniSTS
Cytogenetic Map1q25.1UniSTS
Cytogenetic Map11q14.1UniSTS
Cytogenetic Map4p16.3UniSTS
Cytogenetic Map1p34.2UniSTS
Cytogenetic Map11q23.1UniSTS
Cytogenetic Map3p21.1UniSTS
Cytogenetic Map16q22.2UniSTS
Cytogenetic Map14q32.31UniSTS
Cytogenetic Map16q11.2UniSTS
Cytogenetic Map6q22UniSTS
Cytogenetic Map10p15.3UniSTS
Cytogenetic Map11q23UniSTS
Cytogenetic Map22q13.2UniSTS
Cytogenetic Map12q12UniSTS
Cytogenetic Map19q13.42UniSTS
Cytogenetic Map19q13.11UniSTS
Cytogenetic Map12q24.31UniSTS
Cytogenetic Map15q15UniSTS
Cytogenetic Map2q33.1UniSTS
Cytogenetic Map22q12.3UniSTS
Cytogenetic Map20q11UniSTS
Cytogenetic Map22q11.23UniSTS
Cytogenetic Map17q25UniSTS
Cytogenetic Map1p13.3UniSTS
Cytogenetic Map3p22.1UniSTS
Cytogenetic Map8q22.1UniSTS
Cytogenetic Map16q22.1UniSTS
Cytogenetic Map18p11.31UniSTS
Cytogenetic Map19p12UniSTS
Cytogenetic Map11q13.1UniSTS
Cytogenetic Map19p13.3UniSTS
Cytogenetic Map2p22.1UniSTS
Cytogenetic Map16p13.3UniSTS
Cytogenetic Map1p35.2UniSTS
Cytogenetic MapYp11.2UniSTS
Cytogenetic Map13q13.1UniSTS
Cytogenetic Map20q11.22UniSTS
Cytogenetic Map19q13.2UniSTS
Cytogenetic Map18q12UniSTS
Cytogenetic Map17q21.33UniSTS
Cytogenetic Map15q15.1UniSTS
Cytogenetic Map3q27.2UniSTS
Cytogenetic Map3q21.3UniSTS
Cytogenetic Map5p15.2UniSTS
Cytogenetic Map20q13.12UniSTS
Cytogenetic Map17q21UniSTS
Cytogenetic Map1q42UniSTS
Cytogenetic Map14q32.11UniSTS
Cytogenetic Map17q21.2-q21.3UniSTS
Cytogenetic Map5q32-q34UniSTS
Cytogenetic Map15q14UniSTS
Cytogenetic Map16q13UniSTS
Cytogenetic Map3q21.2UniSTS
Cytogenetic Map3p21.3UniSTS
Cytogenetic Map14q24.2UniSTS
Cytogenetic Map12q24.13UniSTS
Cytogenetic Map13q14.11UniSTS
Cytogenetic Map3q27.3UniSTS
Cytogenetic Map1q32.3UniSTS
Cytogenetic Map6p22.1UniSTS
Cytogenetic Map9q34.11UniSTS
Cytogenetic Map6q21UniSTS
Cytogenetic Map6q25.3UniSTS
Cytogenetic Map2p11.2UniSTS
Cytogenetic Map13q14.3UniSTS
Cytogenetic Map17q11.2UniSTS
Cytogenetic Map10p12UniSTS
Cytogenetic Map2q33.3UniSTS
Cytogenetic Map14q21.3UniSTS
Cytogenetic Map8p22-p21UniSTS
Cytogenetic Map18q11.2UniSTS
Cytogenetic Map2p15UniSTS
Cytogenetic Map17q22UniSTS
Cytogenetic Map12q21.33UniSTS
Cytogenetic Map20q13.32UniSTS
Cytogenetic Map1p34.1UniSTS
Cytogenetic Map10q26UniSTS
Cytogenetic Map8p23.1UniSTS
Cytogenetic Map19p13UniSTS
Cytogenetic Map7q21.13UniSTS
Cytogenetic Map7q31.1UniSTS
Cytogenetic Map1p33UniSTS
Cytogenetic Map21q22.3UniSTS
Cytogenetic Map1p35.1UniSTS
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Cytogenetic Map11q12.1UniSTS
Cytogenetic Map3p26UniSTS
Cytogenetic Map5q13UniSTS
Cytogenetic Map8p21UniSTS
Cytogenetic Map19q13.1-q13.2UniSTS
Cytogenetic Map1p33-p32UniSTS
Cytogenetic Map7q36.2UniSTS
Cytogenetic Map4q32.3UniSTS
Cytogenetic Map16p13.2UniSTS
Cytogenetic Map14q32UniSTS
Cytogenetic Map10q11.23UniSTS
Cytogenetic Map10q26.1UniSTS
Cytogenetic Map9q32-q33.3UniSTS
Cytogenetic Map9q22.1-q22.2UniSTS
Cytogenetic Map3q26.1-q26.2UniSTS
Cytogenetic Map5q31-q34UniSTS
Cytogenetic Map9q33-q34UniSTS
Cytogenetic Map5q11.2-q13.2UniSTS
Cytogenetic Map13q32UniSTS
Cytogenetic Map9q22.32UniSTS
Cytogenetic Map1p36.3UniSTS
Cytogenetic Map1p36.3-p36.2UniSTS
Cytogenetic Map4q28.1UniSTS
Cytogenetic Map5q22UniSTS
Cytogenetic Map12p11.21UniSTS
Cytogenetic MapXq13.3UniSTS
Cytogenetic Map9q31.3UniSTS
Cytogenetic Map3p26.3UniSTS
Cytogenetic Map2q11.1UniSTS
Cytogenetic Map21q11.2UniSTS
Cytogenetic Map18q21.32UniSTS
Cytogenetic Map15q26.2UniSTS
Cytogenetic Map12q24.23UniSTS
Cytogenetic Map10q25.3UniSTS
Cytogenetic Map20q11.23UniSTS
Cytogenetic Map20p12.1UniSTS
Cytogenetic Map2q31.1-q31.2UniSTS
Cytogenetic MapXp22.31UniSTS
Cytogenetic MapXp21.3UniSTS
Cytogenetic Map5q33.3UniSTS
Cytogenetic Map4q28.2UniSTS
Cytogenetic Map3p14.2UniSTS
Cytogenetic Map3q24UniSTS
Cytogenetic Map2q13UniSTS
Cytogenetic Map20q13.2UniSTS
Cytogenetic Map14q11.2-q12UniSTS
Cytogenetic Map3p24UniSTS
Cytogenetic Map12q23.3UniSTS
Cytogenetic Map11q24.3UniSTS
Cytogenetic Map11q14.3UniSTS
Cytogenetic Map10q25.2UniSTS
Cytogenetic Map3q25.1UniSTS
Cytogenetic Map8q13UniSTS
Cytogenetic Map1p22.2UniSTS
Cytogenetic Map3p22.3UniSTS
Cytogenetic Map18q11.1UniSTS
Cytogenetic Map8q23.3UniSTS
Cytogenetic Map15q24UniSTS
Cytogenetic Map11cen-q12UniSTS
Cytogenetic Map11q25UniSTS
Cytogenetic Map3p22.2UniSTS
Cytogenetic MapXp21.1UniSTS
Cytogenetic Map7q36UniSTS
Cytogenetic Map7p14.3UniSTS
Cytogenetic Map12q21UniSTS
Cytogenetic Map7p15UniSTS
Cytogenetic Map7q22-q31UniSTS
Cytogenetic Map11q22UniSTS
Cytogenetic Map5p15.3UniSTS
Cytogenetic Map20q13.3-qterUniSTS
Cytogenetic Map1p35-p34UniSTS
Cytogenetic Map4p13-p12UniSTS
Cytogenetic Map10q21-q22UniSTS
Cytogenetic Map4q22UniSTS
Cytogenetic Map7p13-p11.1UniSTS
Cytogenetic Map9q31-q34UniSTS
Cytogenetic Map7q21.1-q22UniSTS
Cytogenetic Map15q26.1UniSTS
Cytogenetic Map3q13.13-q13.2UniSTS
Cytogenetic MapXp22.13UniSTS
Cytogenetic Map13q12.12UniSTS
Cytogenetic Map13q14.2UniSTS
Cytogenetic Map12qUniSTS
Cytogenetic Map1pUniSTS
Cytogenetic Map16pUniSTS
Cytogenetic Map15qUniSTS
Cytogenetic Map7qUniSTS
Cytogenetic Map2qUniSTS
Cytogenetic Map5q13.1UniSTS
Cytogenetic Map11p14.1UniSTS
Cytogenetic Map4q32UniSTS
Cytogenetic Map2p22UniSTS
Cytogenetic Map5q14.3UniSTS
Cytogenetic Map10p12.1UniSTS
Cytogenetic Map5q23.2UniSTS
Cytogenetic Map2p24.1UniSTS
Cytogenetic Map8q24.13UniSTS
Cytogenetic Map12p13.32UniSTS
Cytogenetic Map9p21.1UniSTS
Cytogenetic Map9q34.2-q34.3UniSTS
D12S1555  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371266,276,117 - 66,276,306UniSTSGRCh37
Celera1265,942,032 - 65,942,221UniSTS
Cytogenetic Map12q14.3UniSTS
Cytogenetic Map12q15UniSTS
HuRef1263,329,130 - 63,329,319UniSTS


Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
entire extraembryonic component
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
1162 2422 2441 2084 4079 1359 2023 3 400 1218 249 2182 5611 5378 52 3027 659 1628 1536 163

Sequence

Nucleotide Sequences
RefSeq Transcripts NG_016296 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001300918 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001300919 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001330190 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_003483 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_003484 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide A52568 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  A80000 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB209853 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC090673 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC107308 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF217451 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF326972 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF533651 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF533652 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF533653 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF533654 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AH003120 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AH003458 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AI073570 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AI290477 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK311399 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK311443 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK311447 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY601861 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY601862 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY601863 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY601864 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY601865 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY601866 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY601867 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BM782659 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CA422738 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471054 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CN334368 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CP068266 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KT585223 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KY966265 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U28749 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U29112 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U29113 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U29115 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U29119 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X92518 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  Z31595 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENST00000354636   ⟹   ENSP00000346658
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1265,824,460 - 65,915,527 (+)Ensembl
Ensembl Acc Id: ENST00000393577   ⟹   ENSP00000377205
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1265,825,123 - 65,952,536 (+)Ensembl
Ensembl Acc Id: ENST00000393578   ⟹   ENSP00000377206
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1265,824,460 - 65,843,523 (+)Ensembl
Ensembl Acc Id: ENST00000403681   ⟹   ENSP00000384026
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1265,824,483 - 65,966,291 (+)Ensembl
Ensembl Acc Id: ENST00000425208   ⟹   ENSP00000407306
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1265,824,460 - 65,882,126 (+)Ensembl
Ensembl Acc Id: ENST00000536545   ⟹   ENSP00000437621
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1265,824,460 - 65,915,447 (+)Ensembl
Ensembl Acc Id: ENST00000537275   ⟹   ENSP00000437747
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1265,824,460 - 65,842,917 (+)Ensembl
Ensembl Acc Id: ENST00000537429   ⟹   ENSP00000443372
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1265,824,460 - 65,881,890 (+)Ensembl
Ensembl Acc Id: ENST00000539662   ⟹   ENSP00000440919
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1265,828,001 - 65,963,410 (+)Ensembl
Ensembl Acc Id: ENST00000541363   ⟹   ENSP00000439317
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1265,824,898 - 65,958,854 (+)Ensembl
Ensembl Acc Id: ENST00000545998
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1265,824,811 - 65,829,013 (+)Ensembl
RefSeq Acc Id: NM_001300918   ⟹   NP_001287847
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381265,824,460 - 65,952,536 (+)NCBI
CHM1_11266,185,507 - 66,313,588 (+)NCBI
T2T-CHM13v2.01265,803,963 - 65,932,065 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001300919   ⟹   NP_001287848
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381265,824,460 - 65,915,527 (+)NCBI
CHM1_11266,185,507 - 66,276,579 (+)NCBI
T2T-CHM13v2.01265,803,963 - 65,895,050 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001330190   ⟹   NP_001317119
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381265,824,460 - 65,843,523 (+)NCBI
T2T-CHM13v2.01265,803,963 - 65,823,025 (+)NCBI
Sequence:
RefSeq Acc Id: NM_003483   ⟹   NP_003474
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381265,824,483 - 65,966,291 (+)NCBI
GRCh371266,218,240 - 66,360,071 (+)ENTREZGENE
Build 361264,504,507 - 64,646,338 (+)NCBI Archive
HuRef1263,271,242 - 63,413,086 (+)ENTREZGENE
CHM1_11266,185,507 - 66,327,350 (+)NCBI
T2T-CHM13v2.01265,803,986 - 65,945,820 (+)NCBI
Sequence:
RefSeq Acc Id: NM_003484   ⟹   NP_003475
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381265,824,460 - 65,915,527 (+)NCBI
GRCh371266,218,240 - 66,360,071 (+)ENTREZGENE
Build 361264,504,507 - 64,595,574 (+)NCBI Archive
HuRef1263,271,242 - 63,413,086 (+)ENTREZGENE
CHM1_11266,185,507 - 66,276,579 (+)NCBI
T2T-CHM13v2.01265,803,963 - 65,895,050 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001287847 (Get FASTA)   NCBI Sequence Viewer  
  NP_001287848 (Get FASTA)   NCBI Sequence Viewer  
  NP_001317119 (Get FASTA)   NCBI Sequence Viewer  
  NP_003474 (Get FASTA)   NCBI Sequence Viewer  
  NP_003475 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAA68613 (Get FASTA)   NCBI Sequence Viewer  
  AAA68614 (Get FASTA)   NCBI Sequence Viewer  
  AAA96484 (Get FASTA)   NCBI Sequence Viewer  
  AAN64002 (Get FASTA)   NCBI Sequence Viewer  
  AAO48741 (Get FASTA)   NCBI Sequence Viewer  
  AAO48742 (Get FASTA)   NCBI Sequence Viewer  
  AAU43851 (Get FASTA)   NCBI Sequence Viewer  
  AAU43852 (Get FASTA)   NCBI Sequence Viewer  
  AAU43853 (Get FASTA)   NCBI Sequence Viewer  
  AAU43854 (Get FASTA)   NCBI Sequence Viewer  
  AAU43855 (Get FASTA)   NCBI Sequence Viewer  
  AAU43856 (Get FASTA)   NCBI Sequence Viewer  
  AAU43857 (Get FASTA)   NCBI Sequence Viewer  
  BAD93090 (Get FASTA)   NCBI Sequence Viewer  
  CAA03408 (Get FASTA)   NCBI Sequence Viewer  
  CAA63295 (Get FASTA)   NCBI Sequence Viewer  
  CAA83472 (Get FASTA)   NCBI Sequence Viewer  
  CAB59170 (Get FASTA)   NCBI Sequence Viewer  
  EAW97152 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSP00000346658
  ENSP00000346658.3
  ENSP00000377205
  ENSP00000377205.3
  ENSP00000377206
  ENSP00000377206.3
  ENSP00000384026
  ENSP00000384026.2
  ENSP00000407306.2
  ENSP00000437621
  ENSP00000437621.1
  ENSP00000437747.1
  ENSP00000439317.1
  ENSP00000440919.1
  ENSP00000443372.1
GenBank Protein P52926 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_003474   ⟸   NM_003483
- Peptide Label: isoform a
- UniProtKB: Q1M187 (UniProtKB/Swiss-Prot),   Q1M186 (UniProtKB/Swiss-Prot),   Q1M185 (UniProtKB/Swiss-Prot),   Q1M182 (UniProtKB/Swiss-Prot),   E7EWA2 (UniProtKB/Swiss-Prot),   E7EP85 (UniProtKB/Swiss-Prot),   Q1M188 (UniProtKB/Swiss-Prot),   P52926 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_003475   ⟸   NM_003484
- Peptide Label: isoform b
- UniProtKB: P52926 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001287847   ⟸   NM_001300918
- Peptide Label: isoform c
- UniProtKB: F5H2A4 (UniProtKB/TrEMBL),   F5H2U8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001287848   ⟸   NM_001300919
- Peptide Label: isoform d
- UniProtKB: F5H6H0 (UniProtKB/TrEMBL),   Q1M183 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001317119   ⟸   NM_001330190
- Peptide Label: isoform 3
- UniProtKB: P52926 (UniProtKB/Swiss-Prot)
- Sequence:
Ensembl Acc Id: ENSP00000439317   ⟸   ENST00000541363
Ensembl Acc Id: ENSP00000407306   ⟸   ENST00000425208
Ensembl Acc Id: ENSP00000384026   ⟸   ENST00000403681
Ensembl Acc Id: ENSP00000437621   ⟸   ENST00000536545
Ensembl Acc Id: ENSP00000437747   ⟸   ENST00000537275
Ensembl Acc Id: ENSP00000443372   ⟸   ENST00000537429
Ensembl Acc Id: ENSP00000377206   ⟸   ENST00000393578
Ensembl Acc Id: ENSP00000377205   ⟸   ENST00000393577
Ensembl Acc Id: ENSP00000346658   ⟸   ENST00000354636
Ensembl Acc Id: ENSP00000440919   ⟸   ENST00000539662

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P52926-F1-model_v2 AlphaFold P52926 1-109 view protein structure

Promoters
RGD ID:6789951
Promoter ID:HG_KWN:16077
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:NB4
Transcripts:ENST00000393577,   ENST00000393578,   NM_003483,   NM_003484,   UC001SSP.1,   UC001SSS.1,   UC001SST.1,   UC001SSW.1,   UC009ZQQ.1
Position:
Human AssemblyChrPosition (strand)Source
Build 361264,503,091 - 64,505,092 (+)MPROMDB
RGD ID:7224703
Promoter ID:EPDNEW_H18096
Type:initiation region
Name:HMGA2_5
Description:high mobility group AT-hook 2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H18097  EPDNEW_H18099  EPDNEW_H18098  EPDNEW_H18100  EPDNEW_H18101  
Experiment Methods:Single-end sequencing.; Paired-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh381265,823,636 - 65,823,696EPDNEW
RGD ID:7224701
Promoter ID:EPDNEW_H18097
Type:initiation region
Name:HMGA2_4
Description:high mobility group AT-hook 2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H18096  EPDNEW_H18099  EPDNEW_H18098  EPDNEW_H18100  EPDNEW_H18101  
Experiment Methods:Single-end sequencing.; Paired-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh381265,823,974 - 65,824,034EPDNEW
RGD ID:7224707
Promoter ID:EPDNEW_H18098
Type:initiation region
Name:HMGA2_6
Description:high mobility group AT-hook 2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H18097  EPDNEW_H18096  EPDNEW_H18099  EPDNEW_H18100  EPDNEW_H18101  
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh381265,824,229 - 65,824,289EPDNEW
RGD ID:7224705
Promoter ID:EPDNEW_H18099
Type:initiation region
Name:HMGA2_1
Description:high mobility group AT-hook 2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H18097  EPDNEW_H18096  EPDNEW_H18098  EPDNEW_H18100  EPDNEW_H18101  
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh381265,824,483 - 65,824,543EPDNEW
RGD ID:7224709
Promoter ID:EPDNEW_H18100
Type:initiation region
Name:HMGA2_2
Description:high mobility group AT-hook 2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H18097  EPDNEW_H18096  EPDNEW_H18099  EPDNEW_H18098  EPDNEW_H18101  
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh381265,824,833 - 65,824,893EPDNEW
RGD ID:7224711
Promoter ID:EPDNEW_H18101
Type:initiation region
Name:HMGA2_3
Description:high mobility group AT-hook 2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H18097  EPDNEW_H18096  EPDNEW_H18099  EPDNEW_H18098  EPDNEW_H18100  
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh381265,825,099 - 65,825,159EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:5009 AgrOrtholog
COSMIC HMGA2 COSMIC
Ensembl Genes ENSG00000149948 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENST00000354636 ENTREZGENE
  ENST00000354636.7 UniProtKB/Swiss-Prot
  ENST00000393577 ENTREZGENE
  ENST00000393577.7 UniProtKB/TrEMBL
  ENST00000393578 ENTREZGENE
  ENST00000393578.7 UniProtKB/Swiss-Prot
  ENST00000403681 ENTREZGENE
  ENST00000403681.7 UniProtKB/Swiss-Prot
  ENST00000425208.6 UniProtKB/Swiss-Prot
  ENST00000536545 ENTREZGENE
  ENST00000536545.5 UniProtKB/TrEMBL
  ENST00000537275.5 UniProtKB/Swiss-Prot
  ENST00000537429.5 UniProtKB/Swiss-Prot
  ENST00000539662.1 UniProtKB/TrEMBL
  ENST00000541363.5 UniProtKB/TrEMBL
GTEx ENSG00000149948 GTEx
HGNC ID HGNC:5009 ENTREZGENE
Human Proteome Map HMGA2 Human Proteome Map
InterPro AT_hook_DNA-bd_motif UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  HMGA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  HMGI/Y_DNA-bd_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report hsa:8091 UniProtKB/Swiss-Prot
NCBI Gene 8091 ENTREZGENE
OMIM 600698 OMIM
PANTHER HIGH MOBILITY GROUP AT-HOOK 2 UniProtKB/TrEMBL
  HIGH MOBILITY GROUP PROTEIN HMGI-C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  HIGH MOBILITY GROUP PROTEINS HMG-A AND C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam AT_hook UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PharmGKB PA35093 PharmGKB
PRINTS ATHOOK UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  HIGHMOBLTYIY UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE HMGI_Y UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART AT_hook UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt E7EP85 ENTREZGENE
  E7EWA2 ENTREZGENE
  F5H2A4 ENTREZGENE, UniProtKB/TrEMBL
  F5H2U8 ENTREZGENE, UniProtKB/TrEMBL
  F5H6H0 ENTREZGENE, UniProtKB/TrEMBL
  H0YFY4_HUMAN UniProtKB/TrEMBL
  HMGA2_HUMAN UniProtKB/Swiss-Prot, ENTREZGENE
  Q1M182 ENTREZGENE
  Q1M183 ENTREZGENE, UniProtKB/TrEMBL
  Q1M185 ENTREZGENE
  Q1M186 ENTREZGENE
  Q1M187 ENTREZGENE
  Q1M188 ENTREZGENE
UniProt Secondary E7EP85 UniProtKB/Swiss-Prot
  E7EWA2 UniProtKB/Swiss-Prot
  Q1M182 UniProtKB/Swiss-Prot
  Q1M185 UniProtKB/Swiss-Prot
  Q1M186 UniProtKB/Swiss-Prot
  Q1M187 UniProtKB/Swiss-Prot
  Q1M188 UniProtKB/Swiss-Prot