GWAS828347_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS828347_H (body height QTL GWAS828347 (human)) Homo sapiens

Symbol: GWAS828347_H
Name: body height QTL GWAS828347 (human)
RGD ID: 407179371
Trait: body height   (VT:0001253)    
Measurement Type: body height   (CMO:0000106)    
LOD Score: Not Available
P Value: 5.0E-8
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381265,853,230 - 65,853,231RGD_MAPPER_PIPELINEGRCh38
GRCh371266,247,010 - 66,247,011RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Data Annotations    Click to see Annotation Detail View

Clinical Measurement
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS828347_HHumanbody height  IAGPrs11834895405850206Based on the EFO term IDGWAS_CATALOGPMID:35831902

Vertebrate Trait
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS828347_HHumanbody height  IAGPrs11834895405850206Based on the EFO term IDGWAS_CATALOGPMID:35831902

Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS828347_HHumanbody height  IAGPrs11834895405850206 GWAS_CATALOGPMID:35831902
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement
body height  (IAGP)

Vertebrate Trait
body height  (IAGP)

References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1348013HMGA2high mobility group AT-hook 2126582446065966291Human
13800730HMGA2-AS1HMGA2 antisense RNA 1126585122765882325Human

Position Markers

Peak: (rs11834895)
Human AssemblyChrPosition (strand)Source
GRCh381265,853,230 - 65,853,231RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
407179371GWAS828347_Hbody height QTL GWAS828347 (human)5e-08body height (VT:0001253)body height (CMO:0000106)126585323065853231Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS828347_H GCST90131910 Height 67,452 Han Chinese ancestry individuals C NR 5E-8 7.302 rs11834895 0.033 body height (EFO:0004339)
 PMID:35831902
Database Acc Id Source(s)
GWAS Catalog GCST90131910 GWAS Catalog

RGD Curation Notes
Note Type Note Reference