GWAS662577_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS662577_H (body height QTL GWAS662577 (human)) Homo sapiens

Symbol: GWAS662577_H
Name: body height QTL GWAS662577 (human)
RGD ID: 407013601
Trait: body height   (VT:0001253)    
Measurement Type: body height   (CMO:0000106)    
LOD Score: Not Available
P Value: 5.0E-39
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381265,956,032 - 65,956,033RGD_MAPPER_PIPELINEGRCh38
GRCh371266,349,812 - 66,349,813RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Data Annotations    Click to see Annotation Detail View

Clinical Measurement
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS662577_HHumanbody height  IAGPrs17179670405850206Based on the EFO term IDGWAS_CATALOGPMID:36224396

Vertebrate Trait
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS662577_HHumanbody height  IAGPrs17179670405850206Based on the EFO term IDGWAS_CATALOGPMID:36224396

Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS662577_HHumanbody height  IAGPrs17179670405850206 GWAS_CATALOGPMID:36224396
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement
body height  (IAGP)

Vertebrate Trait
body height  (IAGP)

References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1348013HMGA2high mobility group AT-hook 2126582446065966291Human

Position Markers

Peak: (rs17179670)
Human AssemblyChrPosition (strand)Source
GRCh381265,956,032 - 65,956,033RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
407013601GWAS662577_Hbody height QTL GWAS662577 (human)5e-39body height (VT:0001253)body height (CMO:0000106)126595603265956033Human
407260506GWAS909482_Hbody height QTL GWAS909482 (human)3e-08body height (VT:0001253)body height (CMO:0000106)126595603265956033Human
406922732GWAS571708_Hbody height QTL GWAS571708 (human)1e-33body height (VT:0001253)body height (CMO:0000106)126595603265956033Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS571708_H GCST008839 Height 159,095 Japanese ancestry individuals ? NR 1E-33 33 rs17179670 0.08037376 body height (EFO:0004339)
 PMID:31562340
GWAS662577_H GCST90245845 Height 472,730 East Asian ancestry individuals G 0.0537 5E-39 38.302 rs17179670 0.0669 body height (EFO:0004339)
 PMID:36224396
GWAS909482_H GCST90131910 Height 67,452 Han Chinese ancestry individuals A NR 3E-8 7.523 rs17179670 0.066 body height (EFO:0004339)
 PMID:35831902
Database Acc Id Source(s)
GWAS Catalog GCST90245845 GWAS Catalog

RGD Curation Notes
Note Type Note Reference