GWAS765646_H QTL Report (Homo sapiens) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
QTL Registration

QTL: GWAS765646_H (sexual dimorphism measurement QTL GWAS765646 (human)) Homo sapiens

Symbol: GWAS765646_H
Name: sexual dimorphism measurement QTL GWAS765646 (human)
RGD ID: 407116670
Trait: sexual dimorphism measurement
LOD Score: Not Available
P Value: 5.0E-10
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381265,931,909 - 65,931,910RGD_MAPPER_PIPELINEGRCh38
GRCh371266,325,689 - 66,325,690RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS765646_HHumansexual dimorphism measurement  IAGPrs343086405850206 GWAS_CATALOGPMID:37277458
References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1348013HMGA2high mobility group AT-hook 2126582446065966291Human

Position Markers

Peak: (rs343086)
Human AssemblyChrPosition (strand)Source
GRCh381265,931,909 - 65,931,910RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
406935189GWAS584165_Htotal cortical area measurement QTL GWAS584165 (human)3e-09total cortical area measurement126593190965931910Human
407116670GWAS765646_Hsexual dimorphism measurement QTL GWAS765646 (human)5e-10sexual dimorphism measurement126593190965931910Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS584165_H GCST010226 Cortical surface area (global PC1) 23,784 European ancestry individuals ? NR 3E-9 8.523 rs343086 0.8945 total cortical area measurement (EFO:0008381)
 PMID:32198502
GWAS765646_H GCST90270118 Multi-trait sex score 141,980 European ancestry males ? NR 5E-10 9.302 rs343086 N/A sexual dimorphism measurement (EFO:0021796)
 PMID:37277458
Database Acc Id Source(s)
GWAS Catalog GCST90270118 GWAS Catalog

RGD Curation Notes
Note Type Note Reference