Birc6 (baculoviral IAP repeat-containing 6) - Rat Genome Database

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Gene: Birc6 (baculoviral IAP repeat-containing 6) Rattus norvegicus
Analyze
Symbol: Birc6
Name: baculoviral IAP repeat-containing 6
RGD ID: 1307247
Description: Predicted to enable cysteine-type endopeptidase inhibitor activity and ubiquitin conjugating enzyme activity. Predicted to be involved in negative regulation of extrinsic apoptotic signaling pathway; placenta development; and regulation of cytokinesis. Predicted to act upstream of or within embryonic placenta development; negative regulation of apoptotic process; and positive regulation of cell population proliferation. Predicted to be located in several cellular components, including microtubule cytoskeleton; midbody; and trans-Golgi network. Orthologous to human BIRC6 (baculoviral IAP repeat containing 6); PARTICIPATES IN ubiquitin/proteasome degradation pathway; INTERACTS WITH 17alpha-ethynylestradiol; 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: baculoviral IAP repeat-containing protein 6; LOC313876
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8626,474,843 - 26,668,275 (-)NCBIGRCr8
mRatBN7.2620,722,922 - 20,916,396 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl620,722,922 - 20,916,434 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx621,052,875 - 21,246,458 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0621,368,724 - 21,562,308 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0620,849,173 - 21,042,748 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0621,900,763 - 22,092,484 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl621,950,100 - 22,092,346 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0631,789,563 - 31,980,891 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4620,655,186 - 20,848,961 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1620,657,539 - 20,852,541 (-)NCBI
Celera620,282,854 - 20,476,452 (-)NCBICelera
Cytogenetic Map6q13NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
17alpha-ethynylestradiol  (EXP,ISO)
17beta-estradiol  (EXP,ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3,7,8-Tetrachlorodibenzofuran  (EXP)
2-hydroxypropanoic acid  (ISO)
2-palmitoylglycerol  (ISO)
3,3',5,5'-tetrabromobisphenol A  (ISO)
3,4-methylenedioxymethamphetamine  (EXP)
4'-epidoxorubicin  (ISO)
5-fluorouracil  (ISO)
aflatoxin B1  (ISO)
Aflatoxin B2 alpha  (ISO)
amitrole  (EXP)
amphetamine  (EXP)
aristolochic acid A  (ISO)
arsenite(3-)  (ISO)
atrazine  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
bis(2-ethylhexyl) phthalate  (EXP)
bisphenol A  (EXP,ISO)
Brevetoxin B  (ISO)
cadmium dichloride  (ISO)
caffeine  (ISO)
CGP 52608  (ISO)
chlorpyrifos  (EXP)
cisplatin  (ISO)
clobetasol  (ISO)
copper(II) sulfate  (ISO)
crocidolite asbestos  (ISO)
Cuprizon  (EXP)
cyclosporin A  (ISO)
DDT  (EXP)
dextran sulfate  (ISO)
dibutyl phthalate  (EXP)
dieldrin  (ISO)
doxorubicin  (ISO)
endosulfan  (EXP)
ethanol  (ISO)
formaldehyde  (ISO)
FR900359  (ISO)
furosemide  (EXP)
hydrogen peroxide  (ISO)
ivermectin  (ISO)
methimazole  (EXP)
paracetamol  (EXP,ISO)
phenobarbital  (ISO)
phlorizin  (ISO)
poly(I:C)  (EXP)
potassium dichromate  (ISO)
propylparaben  (ISO)
rac-lactic acid  (ISO)
silicon dioxide  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (ISO)
trichloroethene  (EXP)
triphenyl phosphate  (ISO)
triptonide  (ISO)
triticonazole  (EXP)
tungsten  (ISO)
tunicamycin  (ISO)
valproic acid  (EXP)
vinclozolin  (EXP)
xylitol  (ISO)
zoledronic acid  (ISO)

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Inhibitor of apoptosis proteins: new therapeutic targets in hematological cancer? de Graaf AO, etal., Leukemia. 2004 Nov;18(11):1751-9.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
4. Apollon ubiquitinates SMAC and caspase-9, and has an essential cytoprotection function. Hao Y, etal., Nat Cell Biol. 2004 Sep;6(9):849-60. Epub 2004 Aug 8.
5. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
6. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
7. The membrane-associated inhibitor of apoptosis protein, BRUCE/Apollon, antagonizes both the precursor and mature forms of Smac and caspase-9. Qiu XB and Goldberg AL, J Biol Chem. 2005 Jan 7;280(1):174-82. Epub 2004 Oct 26.
8. GOA pipeline RGD automated data pipeline
9. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
10. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:9628897   PMID:14765125   PMID:15200957   PMID:15485903   PMID:15887267   PMID:18329369   PMID:19946888   PMID:22871113  


Genomics

Comparative Map Data
Birc6
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8626,474,843 - 26,668,275 (-)NCBIGRCr8
mRatBN7.2620,722,922 - 20,916,396 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl620,722,922 - 20,916,434 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx621,052,875 - 21,246,458 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0621,368,724 - 21,562,308 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0620,849,173 - 21,042,748 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0621,900,763 - 22,092,484 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl621,950,100 - 22,092,346 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0631,789,563 - 31,980,891 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4620,655,186 - 20,848,961 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1620,657,539 - 20,852,541 (-)NCBI
Celera620,282,854 - 20,476,452 (-)NCBICelera
Cytogenetic Map6q13NCBI
BIRC6
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38232,357,023 - 32,618,878 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl232,357,023 - 32,619,571 (+)EnsemblGRCh38hg38GRCh38
GRCh37232,582,091 - 32,843,945 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36232,435,600 - 32,697,470 (+)NCBINCBI36Build 36hg18NCBI36
Build 34232,493,964 - 32,754,622NCBI
Celera232,426,891 - 32,688,789 (+)NCBICelera
Cytogenetic Map2p22.3NCBI
HuRef232,320,949 - 32,583,634 (+)NCBIHuRef
CHM1_1232,512,260 - 32,774,075 (+)NCBICHM1_1
T2T-CHM13v2.0232,405,536 - 32,667,526 (+)NCBIT2T-CHM13v2.0
Birc6
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391774,835,247 - 75,010,351 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1774,835,290 - 75,010,351 (+)EnsemblGRCm39 Ensembl
GRCm381774,528,254 - 74,703,356 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1774,528,295 - 74,703,356 (+)EnsemblGRCm38mm10GRCm38
MGSCv371774,927,635 - 75,103,113 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361774,433,277 - 74,608,126 (+)NCBIMGSCv36mm8
Celera1778,838,153 - 79,014,648 (+)NCBICelera
Cytogenetic Map17E2NCBI
cM Map1745.64NCBI
Birc6
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955441739,567 - 922,959 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955441740,299 - 923,920 (+)NCBIChiLan1.0ChiLan1.0
BIRC6
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21293,877,633 - 94,140,932 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A93,881,889 - 94,144,897 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A32,373,479 - 32,633,088 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A33,084,892 - 33,344,219 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A33,084,929 - 33,343,245 (+)Ensemblpanpan1.1panPan2
BIRC6
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11725,618,262 - 25,847,920 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1725,617,892 - 25,847,202 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1725,409,075 - 25,638,461 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01726,180,036 - 26,412,717 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.11725,479,687 - 25,710,494 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01725,551,633 - 25,782,725 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01725,651,296 - 25,881,986 (+)NCBIUU_Cfam_GSD_1.0
Birc6
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629269,724,144 - 69,936,276 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936493899,961 - 1,115,493 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936493903,295 - 1,115,434 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
BIRC6
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl3107,012,986 - 107,269,477 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.13107,012,967 - 107,269,370 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.23113,955,900 - 114,112,369 (-)NCBISscrofa10.2Sscrofa10.2susScr3
BIRC6
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11474,879,597 - 75,138,462 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1474,878,700 - 75,138,441 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604536,936,136 - 37,192,673 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Birc6
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473813,991,022 - 14,246,225 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473813,990,997 - 14,246,741 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Birc6
897 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:140
Count of miRNA genes:109
Interacting mature miRNAs:114
Transcripts:ENSRNOT00000006830
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
738023Alc17Alcohol consumption QTL 173.10.003consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)6127574569Rat
1354616Despr12Despair related QTL 120.0012locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)6127574569Rat
1549905Stresp10Stress response QTL 106.830.0066stress-related behavior trait (VT:0010451)number of approaches toward negative stimulus before onset of defensive burying response (CMO:0001960)6127574569Rat
2300176Bmd51Bone mineral density QTL 5111.70.0001femur mineral mass (VT:0010011)bone mineral density (CMO:0001226)6127574569Rat
2300190Bmd52Bone mineral density QTL 5211.20.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)6127574569Rat
1331743Uae28Urinary albumin excretion QTL 284.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)6134235784Rat
1578758Tcas9Tongue tumor susceptibility QTL 93.29tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)6137618905Rat
1598843Cm63Cardiac mass QTL 632.6heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)6139036266Rat
7411603Foco13Food consumption QTL 135.50.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)6141223769Rat
8552962Pigfal16Plasma insulin-like growth factor 1 level QTL 169.4blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)6141223769Rat
7411542Bw127Body weight QTL 1275.50.001body mass (VT:0001259)body weight gain (CMO:0000420)6141223769Rat
9589129Insul24Insulin level QTL 2419.060.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)6141223769Rat
9589048Scfw3Subcutaneous fat weight QTL 34.570.001subcutaneous adipose mass (VT:1000472)abdominal subcutaneous fat pad weight (CMO:0002069)6141223769Rat
2293709Bss23Bone structure and strength QTL 235.180.0001femur morphology trait (VT:0000559)femur cross-sectional area (CMO:0001661)6142487980Rat
2293650Bss31Bone structure and strength QTL 315.050.0001femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)6142487980Rat
2293656Bss28Bone structure and strength QTL 286.790.0001femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)6142487980Rat
7411584Foco4Food consumption QTL 44.30.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)6142838846Rat
738024Sach5Saccharine consumption QTL 53.90.00039consumption behavior trait (VT:0002069)saccharin intake volume to total fluid intake volume ratio (CMO:0001601)6143394190Rat
2301972Bp325Blood pressure QTL 3254.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)6172227641Rat
1300128Rf16Renal function QTL 163.89renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)6507449734434305Rat
1300164Rf15Renal function QTL 153.12renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)6507449754641141Rat
4145119Mcs25Mammary carcinoma susceptibility QTL 250.0001mammary gland integrity trait (VT:0010552)ratio of deaths to total study population during a period of time (CMO:0001023)610894415110548006Rat
1578665Bss16Bone structure and strength QTL 164.4femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)61173566972593685Rat
1578668Bmd14Bone mineral density QTL 143.8femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)61173566972593685Rat
10401812Kidm54Kidney mass QTL 54kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)61436878859368788Rat
10401800Kidm49Kidney mass QTL 49kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)61436878859368788Rat
1576309Emca7Estrogen-induced mammary cancer QTL 74mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)615107216107351382Rat
1359023Bp272Blood pressure QTL 2722.5arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)61653614027261739Rat
2292589Emca10Estrogen-induced mammary cancer QTL 100.048mammary gland integrity trait (VT:0010552)post-insult time to mammary tumor formation (CMO:0000345)61653614061536140Rat
1354664Slep2Serum leptin concentration QTL 24.49blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)61653614071636405Rat
1641898Colcr4Colorectal carcinoma resistance QTL43.710.0007intestine integrity trait (VT:0010554)well differentiated malignant colorectal tumor surface area measurement (CMO:0002077)62033877762613667Rat
2293839Kiddil2Kidney dilation QTL 24.8kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)62086642281133036Rat
2293841Kiddil4Kidney dilation QTL 44.4kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)62086642281133036Rat

Markers in Region
D6Rat41  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2620,866,422 - 20,866,681 (+)MAPPERmRatBN7.2
Rnor_6.0622,042,854 - 22,043,112NCBIRnor6.0
Rnor_5.0631,931,908 - 31,932,166UniSTSRnor5.0
RGSC_v3.4620,798,926 - 20,799,185RGDRGSC3.4
RGSC_v3.4620,798,927 - 20,799,185UniSTSRGSC3.4
RGSC_v3.1620,801,879 - 20,802,138RGD
Celera620,425,918 - 20,426,176UniSTS
RH 2.0 Map6184.2RGD
SHRSP x BN Map620.6398RGD
FHH x ACI Map620.5099RGD
Cytogenetic Map6q12UniSTS
D6Rat148  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2620,894,065 - 20,894,315 (+)MAPPERmRatBN7.2
Rnor_6.0622,070,168 - 22,070,417NCBIRnor6.0
Rnor_5.0631,958,575 - 31,958,824UniSTSRnor5.0
RGSC_v3.4620,826,657 - 20,826,907RGDRGSC3.4
RGSC_v3.4620,826,658 - 20,826,907UniSTSRGSC3.4
RGSC_v3.1620,829,610 - 20,829,860RGD
Celera620,454,115 - 20,454,364UniSTS
RH 2.0 Map6159.2RGD
SHRSP x BN Map620.6398RGD
Cytogenetic Map6q12UniSTS
RH144401  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2620,845,400 - 20,845,667 (+)MAPPERmRatBN7.2
Rnor_6.0622,022,797 - 22,023,063NCBIRnor6.0
Rnor_5.0631,911,851 - 31,912,117UniSTSRnor5.0
RGSC_v3.4620,776,957 - 20,777,223UniSTSRGSC3.4
Celera620,404,888 - 20,405,154UniSTS
Cytogenetic Map6q12UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 34 40 24 19 24 8 8 74 34 36 10 8
Low 3 9 17 17 17 3 1 5 1
Below cutoff

Sequence


RefSeq Acc Id: ENSRNOT00000006830   ⟹   ENSRNOP00000006830
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl620,722,922 - 20,916,396 (-)Ensembl
Rnor_6.0 Ensembl621,950,100 - 22,092,346 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000083128   ⟹   ENSRNOP00000070913
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl620,722,922 - 20,916,434 (-)Ensembl
Rnor_6.0 Ensembl621,950,100 - 22,092,346 (-)Ensembl
RefSeq Acc Id: NM_001170596   ⟹   NP_001164067
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8626,474,843 - 26,668,275 (-)NCBI
mRatBN7.2620,722,922 - 20,916,396 (-)NCBI
Rnor_6.0621,900,763 - 22,092,484 (-)NCBI
Rnor_5.0631,789,563 - 31,980,891 (-)NCBI
Celera620,282,854 - 20,476,452 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001164067 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDM02832 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000006830.7
  ENSRNOP00000070913
  ENSRNOP00000070913.2
RefSeq Acc Id: NP_001164067   ⟸   NM_001170596
- UniProtKB: A6H9X7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000006830   ⟸   ENSRNOT00000006830
RefSeq Acc Id: ENSRNOP00000070913   ⟸   ENSRNOT00000083128
Protein Domains
UBC core

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13694409
Promoter ID:EPDNEW_R4934
Type:initiation region
Name:Birc6_1
Description:baculoviral IAP repeat-containing 6
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0622,092,292 - 22,092,352EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1307247 AgrOrtholog
BioCyc Gene G2FUF-38450 BioCyc
Ensembl Genes ENSRNOG00000027191 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000006830.8 UniProtKB/TrEMBL
  ENSRNOT00000083128 ENTREZGENE
  ENSRNOT00000083128.2 UniProtKB/TrEMBL
Gene3D-CATH 3.10.110.10 UniProtKB/TrEMBL
InterPro BIR UniProtKB/TrEMBL
  DUF3643 UniProtKB/TrEMBL
  UBQ-conjugat_E2 UniProtKB/TrEMBL
  UBQ-conjugating_enzyme/RWD UniProtKB/TrEMBL
NCBI Gene 313876 ENTREZGENE
PANTHER (E3-INDEPENDENT) E2 UBIQUITIN-CONJUGATING ENZYME UniProtKB/TrEMBL
  BACULOVIRAL IAP REPEAT-CONTAINING PROTEIN 6 UniProtKB/TrEMBL
Pfam BIR UniProtKB/TrEMBL
  DUF3643 UniProtKB/TrEMBL
  UQ_con UniProtKB/TrEMBL
PhenoGen Birc6 PhenoGen
PROSITE BIR_REPEAT_2 UniProtKB/TrEMBL
  UBC_2 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000027191 RatGTEx
SMART BIR UniProtKB/TrEMBL
  UBCc UniProtKB/TrEMBL
Superfamily-SCOP Inhibitor of apoptosis (IAP) repeat UniProtKB/TrEMBL
  SSF54495 UniProtKB/TrEMBL
UniProt A0A0G2JZ53_RAT UniProtKB/TrEMBL
  A6H9X7 ENTREZGENE, UniProtKB/TrEMBL
  F1LY70_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-04-30 Birc6  baculoviral IAP repeat-containing 6   Birc6_predicted  baculoviral IAP repeat-containing 6 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Birc6_predicted  baculoviral IAP repeat-containing 6 (predicted)      Symbol and Name status set to approved 70820 APPROVED