Mir19b1 (microRNA 19b-1) - Rat Genome Database

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Gene: Mir19b1 (microRNA 19b-1) Rattus norvegicus
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Symbol: Mir19b1
Name: microRNA 19b-1
RGD ID: 2325433
Description: Predicted to enable mRNA base-pairing translational repressor activity. Predicted to be involved in several processes, including cholesterol homeostasis; miRNA-mediated post-transcriptional gene silencing; and regulation of cellular response to transforming growth factor beta stimulus. Predicted to act upstream of or within several processes, including cellular response to leukemia inhibitory factor; long-term synaptic potentiation; and pre-B cell differentiation. Predicted to be located in blood microparticle. Predicted to be part of RISC complex. Orthologous to human MIR19B1 (microRNA 19b-1); PARTICIPATES IN Parkinson's disease pathway; INTERACTS WITH mechlorethamine; arsenite(3-) (ortholog); buta-1,3-diene (ortholog).
Type: ncrna (Ensembl: miRNA)
RefSeq Status: PROVISIONAL
Previously known as: microRNA mir-19b-1; Mir19b-1; rno-mir-19b-1
RGD Orthologs
Human
Mouse
Dog
Pig
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81598,588,433 - 98,588,519 (+)NCBIGRCr8
mRatBN7.21592,181,214 - 92,181,300 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1592,181,214 - 92,181,300 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1596,088,003 - 96,088,089 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01597,220,869 - 97,220,955 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01594,128,275 - 94,128,361 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.015100,180,464 - 100,180,550 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl15100,180,464 - 100,180,550 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.015103,641,487 - 103,641,573 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera1591,045,894 - 91,045,980 (+)NCBICelera
Cytogenetic Map15q23NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
B cell apoptotic process  (ISO)
cellular response to bacterial lipopeptide  (ISO)
cellular response to leukemia inhibitory factor  (ISO)
cholesterol homeostasis  (ISO)
in utero embryonic development  (ISO)
long-term synaptic potentiation  (ISO)
lung development  (ISO)
miRNA-mediated gene silencing by inhibition of translation  (ISO)
miRNA-mediated gene silencing by mRNA destabilization  (ISO)
miRNA-mediated post-transcriptional gene silencing  (ISO)
negative regulation of apolipoprotein A-I-mediated signaling pathway  (ISO)
negative regulation of apoptotic process  (ISO)
negative regulation of B cell apoptotic process  (ISO)
negative regulation of cardiac epithelial to mesenchymal transition  (ISO)
negative regulation of cell migration involved in sprouting angiogenesis  (ISO)
negative regulation of cellular response to transforming growth factor beta stimulus  (ISO)
negative regulation of cholesterol efflux  (ISO)
negative regulation of coagulation  (ISO)
negative regulation of extracellular matrix assembly  (ISO)
negative regulation of fibroblast migration  (ISO)
negative regulation of G2/M transition of mitotic cell cycle  (ISO)
negative regulation of gene expression  (ISO)
negative regulation of inflammatory response to antigenic stimulus  (ISO)
negative regulation of interleukin-6 production  (ISO)
negative regulation of matrix metallopeptidase secretion  (ISO)
negative regulation of serine-type endopeptidase activity  (ISO)
negative regulation of transforming growth factor beta receptor signaling pathway  (ISO)
ossification  (ISO)
positive regulation of cell growth involved in cardiac muscle cell development  (ISO)
pre-B cell differentiation  (ISO)
response to bacterium  (ISO)
spinal cord motor neuron differentiation  (ISO)
ventricular septum morphogenesis  (ISO)

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Convergence of miRNA expression profiling, alpha-synuclein interacton and GWAS in Parkinson's disease. Martins M, etal., PLoS One. 2011;6(10):e25443. doi: 10.1371/journal.pone.0025443. Epub 2011 Oct 7.
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:14691248   PMID:16381832   PMID:16766679   PMID:17604727   PMID:18329372   PMID:20403161   PMID:20439489   PMID:21741442   PMID:23185045   PMID:24117217   PMID:24205035   PMID:25650006  
PMID:25751060   PMID:25858512   PMID:27061862   PMID:33332749   PMID:34971719   PMID:35085578   PMID:36539014  


Genomics

Comparative Map Data
Mir19b1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81598,588,433 - 98,588,519 (+)NCBIGRCr8
mRatBN7.21592,181,214 - 92,181,300 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1592,181,214 - 92,181,300 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1596,088,003 - 96,088,089 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01597,220,869 - 97,220,955 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01594,128,275 - 94,128,361 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.015100,180,464 - 100,180,550 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl15100,180,464 - 100,180,550 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.015103,641,487 - 103,641,573 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera1591,045,894 - 91,045,980 (+)NCBICelera
Cytogenetic Map15q23NCBI
MIR19B1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381391,351,192 - 91,351,278 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1391,351,192 - 91,351,278 (+)EnsemblGRCh38hg38GRCh38
GRCh371392,003,446 - 92,003,532 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361390,801,446 - 90,801,532 (+)NCBINCBI36Build 36hg18NCBI36
Celera1372,850,417 - 72,850,503 (+)NCBICelera
Cytogenetic Map13q31.3NCBI
HuRef1372,599,281 - 72,599,367 (+)NCBIHuRef
CHM1_11391,972,086 - 91,972,172 (+)NCBICHM1_1
T2T-CHM13v2.01390,553,768 - 90,553,854 (+)NCBIT2T-CHM13v2.0
Mir19b-1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3914115,281,737 - 115,281,823 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl14115,281,737 - 115,281,823 (+)EnsemblGRCm39 Ensembl
GRCm3814115,044,305 - 115,044,391 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl14115,044,305 - 115,044,391 (+)EnsemblGRCm38mm10GRCm38
MGSCv3714115,443,527 - 115,443,613 (+)NCBIGRCm37MGSCv37mm9NCBIm37
Celera14113,634,873 - 113,634,959 (+)NCBICelera
Cytogenetic Map14E4NCBI
cM Map1459.4NCBI
MIR19B-1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12242,478,598 - 42,478,656 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2242,334,286 - 42,334,344 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02242,879,847 - 42,879,905 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.12242,562,320 - 42,562,378 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02242,616,699 - 42,616,757 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02242,617,762 - 42,617,820 (+)NCBIUU_Cfam_GSD_1.0
MIR19B-1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1160,735,230 - 60,735,328 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11160,735,238 - 60,735,317 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21166,610,642 - 66,610,721 (+)NCBISscrofa10.2Sscrofa10.2susScr3

miRNA Target Status

Predicted Targets
Summary Value
Count of predictions:12683
Count of gene targets:6793
Count of transcripts:7244
Interacting mature miRNAs:rno-miR-19b-1-5p, rno-miR-19b-3p
Prediction methods:Microtar, Miranda, Pita, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
731177Uae26Urinary albumin excretion QTL 262.40.025urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)1567588667101769107Rat
1576315Schws6Schwannoma susceptibility QTL 60.0069nervous system integrity trait (VT:0010566)post-insult time of death (CMO:0002005)155380615298806152Rat
1300144Rf23Renal function QTL 233.61renal blood flow trait (VT:2000006)absolute change in renal vascular resistance (CMO:0001900)154063126898288169Rat
1549844Bss7Bone structure and strength QTL 76.4femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)1575788062101769107Rat
2300326Plaw1Placental weight QTL 1150.005placenta mass (VT:0004257)placenta wet weight (CMO:0002088)1568327165100062518Rat
1300118Bp190Blood pressure QTL 1902.94arterial blood pressure trait (VT:2000000)blood pressure measurement (CMO:0000003)158226252098288169Rat
70182BpQTLcluster12Blood pressure QTL cluster 123.53arterial blood pressure trait (VT:2000000)absolute change in mean arterial blood pressure (CMO:0000533)157369065795018120Rat
70155Gcs1Gastric cancer susceptibility QTL13.8stomach morphology trait (VT:0000470)stomach tumor susceptibility score (CMO:0002043)1576306099101769107Rat
1300120Kidm7Kidney mass QTL 73.55kidney mass (VT:0002707)left kidney wet weight to body weight ratio (CMO:0001954)158226252098288169Rat
631655Bp126Blood pressure QTL 1264arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1558156477101769107Rat
1578646Bmd18Bone mineral density QTL 185.2femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)152280624098288169Rat
1578647Bmd17Bone mineral density QTL 174femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)152280624098288169Rat
631516Gluco31Glucose level QTL 317blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)155559608995018120Rat
1581519Cm59Cardiac mass QTL 592.80.05heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)158885347095840528Rat
1331724Bp223Blood pressure QTL 2233.53715arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)157369051895018228Rat
1641889Colcr6Colorectal carcinoma resistance QTL 62.90.0126intestine integrity trait (VT:0010554)benign colorectal tumor surface area measurement (CMO:0001799)157369051899794247Rat
1578660Bss19Bone structure and strength QTL 194.3femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)152280624098288169Rat
2317055Aia10Adjuvant induced arthritis QTL 103.41joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)1575788062101769107Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
2 3 2 15 21 24 9 15 9 43 22 10 7 18 15

Sequence

Nucleotide Sequences
RefSeq Transcripts NR_031820 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000015 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000053585
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1592,181,214 - 92,181,300 (+)Ensembl
Rnor_6.0 Ensembl15100,180,464 - 100,180,550 (+)Ensembl
RefSeq Acc Id: NR_031820
RefSeq Status: PROVISIONAL
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81598,588,433 - 98,588,519 (+)NCBI
mRatBN7.21592,181,214 - 92,181,300 (+)NCBI
Rnor_6.015100,180,464 - 100,180,550 (+)NCBI
Rnor_5.015103,641,487 - 103,641,573 (+)NCBI
Celera1591,045,894 - 91,045,980 (+)NCBI
Sequence:
Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:2325433 AgrOrtholog
BioCyc Gene G2FUF-12486 BioCyc
Ensembl Genes ENSRNOG00000035462 Ensembl
miRBase MI0000847 ENTREZGENE
NCBI Gene 100314186 ENTREZGENE
PhenoGen Mir19b1 PhenoGen
RatGTEx ENSRNOG00000035462 RatGTEx
RNAcentral URS000013D17D RNACentral
  URS000075C871 RNACentral
  URS000075CDCB RNACentral


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-08-14 Mir19b1  microRNA 19b-1  Mir19b-1  microRNA mir-19b-1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2010-06-02 Mir19b-1  microRNA mir-19b-1      Symbol and Name status set to provisional 70820 PROVISIONAL