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ONTOLOGY REPORT - ANNOTATIONS


Term:embryo development
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Accession:GO:0009790 term browser browse the term
Definition:The process whose specific outcome is the progression of an embryo from its formation until the end of its embryonic life stage. The end of the embryonic stage is organism-specific. For example, for mammals, the process would begin with zygote formation and end with birth. For insects, the process would begin at zygote formation and end with larval hatching. For plant zygotic embryos, this would be from zygote formation to the end of seed dormancy. For plant vegetative embryos, this would be from the initial determination of the cell or group of cells to form an embryo until the point when the embryo becomes independent of the parent plant.
Synonyms:exact_synonym: embryogenesis;   embryonal development
 broad_synonym: embryogenesis and morphogenesis
 alt_id: GO:0009795
 xref: Wikipedia:Embryogenesis


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activation of prostate induction by androgen receptor signaling pathway term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ar androgen receptor IEA
ISO
GO_REF:0000107
MGI:3716756 (MGI:3714080|PMID:17317769)
Ensembl
RGD
PMID:17317769 GO_REF:0000107 MGI:3714080 NCBI chr  X:67,656,253...67,828,998
Ensembl chr  X:67,656,253...67,829,026
JBrowse link
anterior neural tube closure term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Casp3 caspase 3 ISO MGI:5056374 (MGI:5050793|PMID:21515572) RGD PMID:21515572 MGI:5050793 NCBI chr16:48,845,011...48,863,249
Ensembl chr16:48,845,012...48,863,204
JBrowse link
G Folr1 folate receptor alpha ISO (MGI:3721767|PMID:17286298) RGD PMID:17286298 MGI:3721767 NCBI chr 1:166,934,457...166,945,864
Ensembl chr 1:166,934,460...166,943,592
JBrowse link
G Grhl2 grainyhead-like transcription factor 2 ISO MGI:5056365 (MGI:5050793|PMID:21515572) RGD PMID:21515572 MGI:5050793 NCBI chr 7:76,058,623...76,197,360
Ensembl chr 7:76,059,386...76,197,856
JBrowse link
G Specc1l sperm antigen with calponin homology and coiled-coil domains 1-like ISO MGI:4124253|MGI:4128888 (MGI:6101898|PMID:26787558) RGD PMID:26787558 MGI:6101898 NCBI chr20:14,287,470...14,393,879
Ensembl chr20:14,287,457...14,393,793
JBrowse link
anterior neuropore closure term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gatad2a GATA zinc finger domain containing 2A ISO (MGI:3762244|PMID:17565372) RGD PMID:17565372 MGI:3762244 NCBI chr16:21,177,793...21,267,768
Ensembl chr16:21,178,138...21,268,504
JBrowse link
G Tfap2a transcription factor AP-2 alpha ISO MGI:1888387 (MGI:80520|PMID:8622765) RGD PMID:8622765 MGI:80520 NCBI chr17:24,653,342...24,670,457
Ensembl chr17:24,654,902...24,670,457
JBrowse link
anterior/posterior axis specification, embryo term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Frs2 fibroblast growth factor receptor substrate 2 ISO MGI:3580390 (MGI:3580203|PMID:15870281) RGD PMID:15870281 MGI:3580203 NCBI chr 7:60,128,506...60,210,482
Ensembl chr 7:60,128,508...60,210,518
JBrowse link
G Fzd5 frizzled class receptor 5 ISO
IEA
(PMID:9054360)
GO_REF:0000107
RGD
Ensembl
PMID:9054360 GO_REF:0000107 NCBI chr 9:71,443,784...71,445,541
Ensembl chr 9:71,443,588...71,445,739
JBrowse link
G Tasor transcription activation suppressor IEA
ISO
GO_REF:0000107
(MGI:6109647|PMID:28839193)
Ensembl
RGD
PMID:28839193 GO_REF:0000107 MGI:6109647 NCBI chr16:3,050,506...3,108,168
Ensembl chr16:3,051,449...3,105,531
JBrowse link
G Tbx3 T-box transcription factor 3 ISO
ISS
(PMID:9207801)
GO_REF:0000024
RGD
UniProt
PMID:9207801 GO_REF:0000024 NCBI chr12:42,479,518...42,494,588
Ensembl chr12:42,480,560...42,492,526
JBrowse link
G Tcf7l1 transcription factor 7 like 1 ISO MGI:3044616 (MGI:3043490|PMID:14668413) RGD PMID:14668413 MGI:3043490 NCBI chr 4:100,492,796...100,660,401
Ensembl chr 4:100,491,798...100,660,140
JBrowse link
G Tdgf1 teratocarcinoma-derived growth factor 1 ISO MGI:1934206 (MGI:1303194|PMID:9790191) RGD PMID:9790191 MGI:1303194 NCBI chr 8:119,215,266...119,220,909
Ensembl chr 8:119,215,495...119,219,232
JBrowse link
G Wnt5a Wnt family member 5A IEA
ISO
GO_REF:0000107
(MGI:4835157|PMID:9054360)
Ensembl
RGD
PMID:9054360 GO_REF:0000107 MGI:4835157 NCBI chr16:4,469,451...4,490,271
Ensembl chr16:4,469,468...4,489,860
JBrowse link
apoptotic process involved in embryonic digit morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bax BCL2 associated X, apoptosis regulator IEA
ISO
GO_REF:0000107
MGI:1197519 (MGI:3581932|PMID:15967824)
Ensembl
RGD
PMID:15967824 GO_REF:0000107 MGI:3581932 NCBI chr 1:101,451,801...101,457,207
Ensembl chr 1:101,451,802...101,457,207
JBrowse link
G Bcl2l11 BCL2 like 11 ISO MGI:99702 (MGI:3581932|PMID:15967824) RGD PMID:15967824 MGI:3581932 NCBI chr 3:120,726,906...120,764,192
Ensembl chr 3:120,726,906...120,764,192
JBrowse link
G Notch1 notch receptor 1 ISO MGI:1933835|MGI:2158470 (MGI:3608163|PMID:16245338) RGD PMID:16245338 MGI:3608163 NCBI chr 3:3,905,562...3,951,015
Ensembl chr 3:3,905,453...3,951,025
JBrowse link
auditory receptor cell morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mir96 microRNA 96 ISO MGI:4354110 (MGI:4353582|PMID:19363478) RGD PMID:19363478 MGI:4353582 NCBI chr 4:57,463,366...57,463,471
Ensembl chr 4:57,463,366...57,463,471
JBrowse link
G Rac1 Rac family small GTPase 1 ISO MGI:2663662|MGI:2663669 (MGI:4430014|PMID:20016102) RGD PMID:20016102 MGI:4430014 NCBI chr12:13,090,316...13,111,841
Ensembl chr12:13,090,172...13,111,873
JBrowse link
G Scrib scribble planar cell polarity protein ISO MGI:2139764 (MGI:4439427|PMID:20215345) RGD PMID:20215345 MGI:4439427 NCBI chr 7:117,105,810...117,128,802
Ensembl chr 7:117,105,810...117,128,798
JBrowse link
G Sec24b SEC24 homolog B, COPII coat complex component ISO MGI:2145950|MGI:4440621 (MGI:4439427|PMID:20215345) RGD PMID:20215345 MGI:4439427 NCBI chr 2:230,286,886...230,356,887
Ensembl chr 2:230,287,296...230,356,919
JBrowse link
G Slitrk6 SLIT and NTRK-like family, member 6 ISO MGI:4417931 (MGI:4413621|PMID:19936227) RGD PMID:19936227 MGI:4413621 NCBI chr15:95,507,632...95,514,259
Ensembl chr15:95,507,640...95,514,259
JBrowse link
G Wdpcp WD repeat containing planar cell polarity effector IEA
ISO
GO_REF:0000107
MGI:5558098 (MGI:5544506|PMID:24302887)
Ensembl
RGD
PMID:24302887 GO_REF:0000107 MGI:5544506 NCBI chr14:106,393,959...106,759,511
Ensembl chr14:106,393,959...106,759,505
JBrowse link
auditory receptor cell stereocilium organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atp2b2 ATPase plasma membrane Ca2+ transporting 2 ISO MGI:1856799 (MGI:3709803|PMID:11875276) RGD PMID:11875276 MGI:3709803 NCBI chr 4:145,704,779...145,948,997
Ensembl chr 4:145,703,046...146,016,325
JBrowse link
G Cdh23 cadherin-related 23 ISO MGI:1856228|MGI:1856681|MGI:1891428|MGI:2154548|MGI:2154549 (MGI:1929001|PMID:11138008), (MGI:1933915|PMID:11322776), (MGI:3526751|PMID:15537665), (MGI:3625226|PMID:12121736), (MGI:3686545|PMID:17050716), (MGI:5468200|PMID:23217710), (MGI:75953|PMID:7610888), (MGI:81497|PMID:8790740), (MGI:86134|PMID:9039475) RGD PMID:7610888 PMID:8790740 PMID:9039475 PMID:11138008 PMID:11322776 PMID:12121736 PMID:15537665 PMID:17050716 PMID:23217710 MGI:1929001 MGI:1933915 MGI:3526751 MGI:3625226 MGI:3686545 MGI:5468200 MGI:75953 MGI:81497 MGI:86134 NCBI chr20:29,857,018...30,263,758
Ensembl chr20:29,857,637...29,990,111
JBrowse link
G Clic5 chloride intracellular channel 5 ISO
IBA
MGI:3663254 (MGI:3663248|PMID:17021174)
PMID:21873635
RGD PMID:17021174, PMID:21873635 MGI:3663248, RGD:13792537 NCBI chr 9:19,121,676...19,372,673
Ensembl chr 9:19,121,677...19,372,673
JBrowse link
G Clrn1 clarin 1 IEA
ISO
GO_REF:0000107
MGI:3850171 (MGI:3849925|PMID:19414487), (MGI:4353469|PMID:19423712)
Ensembl
RGD
PMID:19414487 PMID:19423712 GO_REF:0000107 MGI:3849925 MGI:4353469 NCBI chr 2:149,049,925...149,088,787
Ensembl chr 2:149,049,925...149,088,787
JBrowse link
G Grxcr2 glutaredoxin and cysteine rich domain containing 2 ISO MGI:2139535|MGI:6281113|MGI:6281114 (MGI:6278501|PMID:30380417) RGD PMID:30380417 MGI:6278501 NCBI chr18:36,308,925...36,334,643
Ensembl chr18:36,308,925...36,322,320
JBrowse link
G Lhfpl5 LHFPL tetraspan subfamily member 5 ISO MGI:3055797|MGI:3718054 (MGI:3578102|PMID:15905332), (MGI:3759710|PMID:17876667), (MGI:5468200|PMID:23217710) RGD PMID:15905332 PMID:17876667 PMID:23217710 MGI:3578102 MGI:3759710 MGI:5468200 NCBI chr20:5,815,837...5,826,137
Ensembl chr20:5,815,837...5,826,137
JBrowse link
G Myo3a myosin IIIA ISO MGI:2448580 (MGI:5766107|PMID:26754646) RGD PMID:26754646 MGI:5766107 NCBI chr17:88,952,635...89,167,538
Ensembl chr17:88,963,981...89,167,018
JBrowse link
G Myo3b myosin IIIB ISO MGI:2183924 (MGI:5766107|PMID:26754646) RGD PMID:26754646 MGI:5766107 NCBI chr 3:56,355,433...56,717,740
Ensembl chr 3:56,355,431...56,584,547
JBrowse link
G Myo7a myosin VIIA ISO MGI:1860092|MGI:2155422 (MGI:2156358|PMID:11753415), (MGI:3625226|PMID:12121736), (MGI:3686545|PMID:17050716) RGD PMID:11753415 PMID:12121736 PMID:17050716 MGI:2156358 MGI:3625226 MGI:3686545 NCBI chr 1:163,001,313...163,071,545
Ensembl chr 1:163,001,875...163,071,508
JBrowse link
G Pcdh15 protocadherin related 15 ISO MGI:1855958|MGI:1856394|MGI:1856396|MGI:1890219|MGI:2151877|MGI:3505691 (MGI:1928787|PMID:10978835), (MGI:3526751|PMID:15537665), (MGI:3619110|PMID:11124469), (MGI:3654702|PMID:16887306), (MGI:5468200|PMID:23217710) RGD PMID:10978835 PMID:11124469 PMID:15537665 PMID:16887306 PMID:23217710 MGI:1928787 MGI:3526751 MGI:3619110 MGI:3654702 MGI:5468200 NCBI chr20:14,952,213...15,334,745
Ensembl chr20:14,952,213...15,334,745
JBrowse link
G Pdzd7 PDZ domain containing 7 ISO
IBA
MGI:4433578 (MGI:5565635|PMID:24334608)
PMID:21873635
RGD PMID:24334608, PMID:21873635 MGI:5565635, RGD:13792537 NCBI chr 1:264,776,393...264,796,206
Ensembl chr 1:264,776,398...264,794,938
JBrowse link
G Pls1 plastin 1 IEA
ISO
GO_REF:0000107
(MGI:5608770|PMID:25124451)
Ensembl
RGD
PMID:25124451 GO_REF:0000107 MGI:5608770 NCBI chr 8:103,557,361...103,659,625
Ensembl chr 8:103,557,364...103,608,913
JBrowse link
G Rest RE1-silencing transcription factor ISS
ISO
GO_REF:0000024
(MGI:6193260|PMID:29961578)
UniProt
RGD
PMID:29961578 GO_REF:0000024 MGI:6193260 NCBI chr14:33,131,985...33,152,019
Ensembl chr14:33,134,511...33,164,141
JBrowse link
G Ripor2 RHO family interacting cell polarization regulator 2 ISO (MGI:5789047|PMID:27269051) RGD PMID:27269051 MGI:5789047 NCBI chr17:42,324,594...42,549,907
Ensembl chr17:42,324,594...42,422,053
JBrowse link
G Scrib scribble planar cell polarity protein ISO MGI:2139764 (MGI:4439427|PMID:20215345) RGD PMID:20215345 MGI:4439427 NCBI chr 7:117,105,810...117,128,802
Ensembl chr 7:117,105,810...117,128,798
JBrowse link
G Sec24b SEC24 homolog B, COPII coat complex component ISO MGI:2145950|MGI:4440621 (MGI:4439427|PMID:20215345) RGD PMID:20215345 MGI:4439427 NCBI chr 2:230,286,886...230,356,887
Ensembl chr 2:230,287,296...230,356,919
JBrowse link
G Slc9a3r1 SLC9A3 regulator 1 ISO MGI:3526430 (MGI:5578076|PMID:24920589) RGD PMID:24920589 MGI:5578076 NCBI chr10:103,713,045...103,730,145
Ensembl chr10:103,713,045...103,730,145
JBrowse link
G Sod1 superoxide dismutase 1 ISS
ISO
GO_REF:0000024
MGI:1857872 (MGI:1344578|PMID:10466888), (MGI:3700629|PMID:10464373)
UniProt
RGD
PMID:10464373 PMID:10466888 GO_REF:0000024 MGI:1344578 MGI:3700629 NCBI chr11:30,363,282...30,368,858
Ensembl chr11:30,363,280...30,368,862
JBrowse link
G Strc stereocilin ISO MGI:3818633 (MGI:3818235|PMID:18849963), (MGI:5430850|PMID:21165971) RGD PMID:18849963 PMID:21165971 MGI:3818235 MGI:5430850 NCBI chr 3:113,324,403...113,343,513
Ensembl chr 3:113,324,698...113,342,675
JBrowse link
G Tprn taperin ISO MGI:2685697 (MGI:6278501|PMID:30380417) RGD PMID:30380417 MGI:6278501 NCBI chr 3:2,480,232...2,487,710
Ensembl chr 3:2,480,232...2,487,710
JBrowse link
G Triobp TRIO and F-actin binding protein ISO MGI:4881773 (MGI:4881391|PMID:20510926) RGD PMID:20510926 MGI:4881391 NCBI chr 7:120,173,892...120,237,145
Ensembl chr 7:120,176,530...120,230,420
JBrowse link
G Whrn whirlin IEA
IBA
ISO
GO_REF:0000107
PMID:21873635
MGI:4432119 (MGI:5796227|PMID:27117407)
Ensembl
RGD
PMID:27117407, PMID:21873635 GO_REF:0000107 MGI:5796227, RGD:13792537 NCBI chr 5:79,235,541...79,317,206
Ensembl chr 5:79,234,950...79,317,206
JBrowse link
axial mesoderm formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Axin1 axin 1 ISO MGI:1857546 (MGI:894149|PMID:9230313) RGD PMID:9230313 MGI:894149
G Epha2 Eph receptor A2 ISO MGI:2448472 (MGI:1934524|PMID:11287184) RGD PMID:11287184 MGI:1934524 NCBI chr 5:159,845,773...159,874,203
Ensembl chr 5:159,845,774...159,874,206
JBrowse link
axial mesodermal cell fate specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nodal nodal growth differentiation factor ISO (MGI:2677178|PMID:14511481) RGD PMID:14511481 MGI:2677178 NCBI chr20:31,035,729...31,044,096
Ensembl chr20:31,035,729...31,044,096
JBrowse link
axis elongation involved in somitogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lrp6 LDL receptor related protein 6 ISO
IBA
MGI:98956 (MGI:1891551|PMID:11029008)
PMID:21873635
RGD PMID:11029008, PMID:21873635 MGI:1891551, RGD:13792537 NCBI chr 4:168,194,054...168,323,962
Ensembl chr 4:168,194,927...168,323,751
JBrowse link
G Med12 mediator complex subunit 12 ISO MGI:4839484 (MGI:4839483|PMID:20630950) RGD PMID:20630950 MGI:4839483 NCBI chr  X:71,174,653...71,197,812
Ensembl chr  X:71,174,699...71,197,812
JBrowse link
G Wnt3a Wnt family member 3A ISO MGI:1298218 (MGI:1891551|PMID:11029008) RGD PMID:11029008 MGI:1891551 NCBI chr10:45,598,898...45,643,151
Ensembl chr10:45,598,912...45,638,035
JBrowse link
blastocyst development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atp1b1 ATPase Na+/K+ transporting subunit beta 1 ISO RGD MGI:1888635 NCBI chr13:82,737,161...82,757,681
Ensembl chr13:82,737,159...82,758,004
JBrowse link
G Bnip2 BCL2 interacting protein 2 ISO (MGI:3848119|PMID:19117032) RGD PMID:19117032 MGI:3848119 NCBI chr 8:76,400,333...76,426,307
Ensembl chr 8:76,400,341...76,426,503
JBrowse link
G Capn2 calpain 2 ISO MGI:3628453 (MGI:3620446|PMID:16433929) RGD PMID:16433929 MGI:3620446 NCBI chr13:100,878,649...100,928,811
Ensembl chr13:100,878,650...100,928,811
JBrowse link
G Cdk11b cyclin-dependent kinase 11B IEA
ISO
GO_REF:0000107
MGI:3043373 (MGI:3041915|PMID:15060143)
Ensembl
RGD
PMID:15060143 GO_REF:0000107 MGI:3041915 NCBI chr 5:173,051,900...173,078,049
Ensembl chr 5:173,052,063...173,078,046
JBrowse link
G Cdx2 caudal type homeo box 2 ISO MGI:1857928 (MGI:3578587|PMID:15788452) RGD PMID:15788452 MGI:3578587 NCBI chr12:9,464,026...9,470,565
Ensembl chr12:9,464,026...9,470,565
JBrowse link
G Dad1 defender against cell death 1 ISO MGI:2445490 (MGI:1858316|PMID:10748466) RGD PMID:10748466 MGI:1858316 NCBI chr15:32,868,136...32,887,933
Ensembl chr15:32,868,087...32,888,095
JBrowse link
G Dmbt1 deleted in malignant brain tumors 1 ISO MGI:3497714 (MGI:3057099|PMID:15452149) RGD PMID:15452149 MGI:3057099 NCBI chr 1:201,620,642...201,689,905
NCBI chr 1:203,149,414...203,228,705
JBrowse link
G Elf3 E74 like ETS transcription factor 3 ISO (MGI:3624255|PMID:16630543) RGD PMID:16630543 MGI:3624255 NCBI chr13:52,083,873...52,088,798
Ensembl chr13:52,083,859...52,088,780
JBrowse link
G Emg1 EMG1 N1-specific pseudouridine methyltransferase ISO MGI:4839753 (MGI:4839400|PMID:20858271) RGD PMID:20858271 MGI:4839400 NCBI chr 4:157,222,366...157,230,647
Ensembl chr 4:157,222,385...157,230,647
JBrowse link
G Eomes eomesodermin ISO MGI:3579497 (MGI:3578587|PMID:15788452) RGD PMID:15788452 MGI:3578587 NCBI chr 8:127,144,367...127,152,618
Ensembl chr 8:127,144,903...127,151,493
JBrowse link
G Etv2 ETS variant transcription factor 2 ISO (MGI:3624255|PMID:16630543) RGD PMID:16630543 MGI:3624255 NCBI chr 1:89,091,239...89,094,570
Ensembl chr 1:89,091,239...89,094,530
JBrowse link
G G2e3 G2/M-phase specific E3 ubiquitin protein ligase ISO MGI:3808723 (MGI:3807157|PMID:18511420) RGD PMID:18511420 MGI:3807157 NCBI chr 6:72,092,148...72,123,878
Ensembl chr 6:72,092,194...72,122,497
JBrowse link
G Gdf9 growth differentiation factor 9 ISO (PMID:24313324) RGD PMID:24313324 NCBI chr10:38,782,519...38,793,238
Ensembl chr10:38,788,992...38,792,940
JBrowse link
G Hand1 heart and neural crest derivatives expressed 1 ISO (PMID:11802795) RGD PMID:11802795 NCBI chr10:43,250,729...43,253,296
Ensembl chr10:43,250,745...43,253,296
JBrowse link
G Hnf1a HNF1 homeobox A ISO (MGI:3653309|PMID:16880268) RGD PMID:16880268 MGI:3653309 NCBI chr12:47,407,811...47,433,342
Ensembl chr12:47,407,811...47,433,342
JBrowse link
G Hormad1 HORMA domain containing 1 ISS
ISO
GO_REF:0000024
(MGI:4868505|PMID:21079677)
UniProt
RGD
PMID:21079677 GO_REF:0000024 MGI:4868505 NCBI chr 2:197,681,820...197,720,197
Ensembl chr 2:197,682,000...197,719,254
JBrowse link
G Kpna7 karyopherin subunit alpha 7 ISO MGI:6108355 (MGI:5913752|PMID:20699224) RGD PMID:20699224 MGI:5913752 NCBI chr12:11,347,631...11,378,810
Ensembl chr12:11,347,643...11,384,349
JBrowse link
G Med21 mediator complex subunit 21 ISO MGI:2445456 (MGI:1345774|PMID:10500093) RGD PMID:10500093 MGI:1345774 NCBI chr 4:180,961,194...180,968,155
Ensembl chr 4:180,961,142...180,968,123
JBrowse link
G N4bp2l2 NEDD4 binding protein 2-like 2 ISO (MGI:3797340|PMID:18360097) RGD PMID:18360097 MGI:3797340 NCBI chr12:627,128...650,604
Ensembl chr12:628,488...650,376
JBrowse link
G Nasp nuclear autoantigenic sperm protein ISS
ISO
GO_REF:0000024
(MGI:3694318|PMID:16728391)
UniProt
RGD
PMID:16728391 GO_REF:0000024 MGI:3694318 NCBI chr 5:135,446,485...135,472,113
Ensembl chr 5:135,446,962...135,472,116
JBrowse link
G Nek2 NIMA-related kinase 2 ISO (MGI:3848119|PMID:19117032) RGD PMID:19117032 MGI:3848119 NCBI chr13:110,511,546...110,524,750
Ensembl chr13:110,511,668...110,522,769
JBrowse link
G Npm2 nucleophosmin/nucleoplasmin 2 ISO (PMID:12714744) RGD PMID:12714744 NCBI chr15:52,337,457...52,345,849
Ensembl chr15:52,337,528...52,344,629
JBrowse link
G Pou5f1 POU class 5 homeobox 1 ISO (PMID:21258368) RGD PMID:21258368 NCBI chr20:3,747,231...3,751,994
Ensembl chr20:3,747,221...3,751,994
JBrowse link
G Psmc3 proteasome 26S subunit, ATPase 3 IEA
ISO
GO_REF:0000107
MGI:2180548 (MGI:1860964|PMID:10945464)
Ensembl
RGD
PMID:10945464 GO_REF:0000107 MGI:1860964 NCBI chr 3:79,876,938...79,882,319
Ensembl chr 3:79,876,938...79,882,319
JBrowse link
G Psmc4 proteasome 26S subunit, ATPase 4 ISO MGI:2180553 (MGI:1860964|PMID:10945464) RGD PMID:10945464 MGI:1860964 NCBI chr 1:84,978,220...84,986,536
Ensembl chr 1:84,978,206...84,986,581
JBrowse link
G Rpl13 ribosomal protein L13 ISO (MGI:6116315|PMID:26902285) RGD PMID:26902285 MGI:6116315 NCBI chr19:55,917,489...55,920,040
Ensembl chr19:55,917,736...55,919,996
JBrowse link
G Rrm2 ribonucleotide reductase regulatory subunit M2 ISO (MGI:6116315|PMID:26902285) RGD PMID:26902285 MGI:6116315 NCBI chr 6:43,884,627...43,890,818
Ensembl chr 6:43,884,678...43,889,515
JBrowse link
G Smarcb1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1 ISO MGI:2387974|MGI:2388033 (MGI:1932782|PMID:11263494), (MGI:1933896|PMID:11313485) RGD PMID:11263494 PMID:11313485 MGI:1932782 MGI:1933896 NCBI chr20:13,679,955...13,702,821
Ensembl chr20:13,680,716...13,704,931
JBrowse link
G Spic Spi-C transcription factor ISO (MGI:3624255|PMID:16630543) RGD PMID:16630543 MGI:3624255 NCBI chr 7:29,225,721...29,233,452
Ensembl chr 7:29,225,727...29,233,392
JBrowse link
G Tgfbr1 transforming growth factor, beta receptor 1 ISO (MGI:1326851|PMID:9921650) RGD PMID:9921650 MGI:1326851 NCBI chr 5:63,056,071...63,119,635
Ensembl chr 5:63,050,758...63,119,635
JBrowse link
G Tgfbr3 transforming growth factor beta receptor 3 ISO (MGI:1326851|PMID:9921650) RGD PMID:9921650 MGI:1326851 NCBI chr14:3,506,416...3,680,508
Ensembl chr14:3,506,339...3,682,545
JBrowse link
G Thoc2 THO complex 2 ISO (MGI:5529717|PMID:24315442) RGD PMID:24315442 MGI:5529717 NCBI chr  X:128,153,824...128,268,327
Ensembl chr  X:128,161,895...128,268,322
JBrowse link
G Thoc5 THO complex 5 ISO (MGI:5529717|PMID:24315442) RGD PMID:24315442 MGI:5529717 NCBI chr14:85,138,219...85,171,729
Ensembl chr14:85,142,279...85,171,726
JBrowse link
G Xab2 XPA binding protein 2 ISO MGI:3574459 (MGI:3574001|PMID:15725628) RGD PMID:15725628 MGI:3574001 NCBI chr12:2,158,391...2,170,397
Ensembl chr12:2,158,389...2,170,504
JBrowse link
G Yap1 Yes1 associated transcriptional regulator ISO MGI:3056522|MGI:3757577|MGI:4819826 (MGI:6116315|PMID:26902285) RGD PMID:26902285 MGI:6116315 NCBI chr 8:6,133,014...6,204,240
Ensembl chr 8:6,135,493...6,203,579
JBrowse link
blastocyst formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Actl6a actin-like 6A ISO (MGI:5913376|PMID:27869233) RGD PMID:27869233 MGI:5913376 NCBI chr 2:119,112,776...119,128,870
Ensembl chr 2:119,112,513...119,129,751
JBrowse link
G Bysl bystin-like ISO (MGI:3700849|PMID:17242206) RGD PMID:17242206 MGI:3700849 NCBI chr 9:15,393,461...15,403,212
Ensembl chr 9:15,393,330...15,403,117
JBrowse link
G Ccnb1ip1 cyclin B1 interacting protein 1 ISO MGI:3050548 (MGI:3757893|PMID:17784788) RGD PMID:17784788 MGI:3757893 NCBI chr15:27,720,220...27,736,528
Ensembl chr15:27,720,223...27,733,785
JBrowse link
G Furin furin (paired basic amino acid cleaving enzyme) IEA
ISO
GO_REF:0000107
UniProtKB:Q61139 (MGI:5702364|PMID:26416966)
Ensembl
RGD
PMID:26416966 GO_REF:0000107 MGI:5702364 NCBI chr 1:142,185,092...142,198,167
Ensembl chr 1:142,185,094...142,197,182
JBrowse link
G Gabpa GA binding protein transcription factor subunit alpha ISO (MGI:5913376|PMID:27869233) RGD PMID:27869233 MGI:5913376 NCBI chr11:24,293,845...24,322,822
Ensembl chr11:24,263,281...24,322,815
JBrowse link
G Kdm4c lysine demethylase 4C ISO (MGI:4421125|PMID:19696013) RGD PMID:19696013 MGI:4421125 NCBI chr 5:90,800,139...91,012,662
Ensembl chr 5:90,800,082...91,012,659
JBrowse link
G Matr3 matrin 3 IEA
ISO
GO_REF:0000107
(MGI:5913376|PMID:27869233)
Ensembl
RGD
PMID:27869233 GO_REF:0000107 MGI:5913376 NCBI chr18:28,351,691...28,390,764
Ensembl chr18:28,361,283...28,390,717
JBrowse link
G Mfn2 mitofusin 2 ISO (MGI:3587532|PMID:16083859) RGD PMID:16083859 MGI:3587532 NCBI chr 5:164,684,244...164,715,414
Ensembl chr 5:164,684,509...164,714,145
JBrowse link
G Mfng MFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase ISO (MGI:5913376|PMID:27869233) RGD PMID:27869233 MGI:5913376 NCBI chr 7:119,978,981...119,996,824
Ensembl chr 7:119,978,983...119,996,824
JBrowse link
G Mxi1 MAX interactor 1, dimerization protein ISO (MGI:5913376|PMID:27869233) RGD PMID:27869233 MGI:5913376 NCBI chr 1:274,030,748...274,090,071
Ensembl chr 1:274,030,978...274,090,071
JBrowse link
G Nop2 NOP2 nucleolar protein ISO (MGI:5913376|PMID:27869233) RGD PMID:27869233 MGI:5913376 NCBI chr 4:157,646,759...157,658,502
Ensembl chr 4:157,647,082...157,658,390
JBrowse link
G Pbrm1 polybromo 1 ISO (MGI:5913376|PMID:27869233) RGD PMID:27869233 MGI:5913376 NCBI chr16:7,103,714...7,202,899
Ensembl chr16:7,103,998...7,200,362
JBrowse link
G Pnldc1 PARN like, ribonuclease domain containing 1 ISO (MGI:5913376|PMID:27869233) RGD PMID:27869233 MGI:5913376 NCBI chr 1:48,038,830...48,058,400
Ensembl chr 1:48,039,909...48,058,400
JBrowse link
G Prickle2 prickle planar cell polarity protein 2 ISO MGI:4941925 (MGI:5319591|PMID:22333836) RGD PMID:22333836 MGI:5319591 NCBI chr 4:124,238,167...124,584,176
Ensembl chr 4:124,238,167...124,338,176
JBrowse link
G Ptpn18 protein tyrosine phosphatase, non-receptor type 18 ISO (MGI:5913376|PMID:27869233) RGD PMID:27869233 MGI:5913376 NCBI chr 9:40,972,089...40,988,790
Ensembl chr 9:40,972,089...40,988,790
JBrowse link
G Rpl7l1 ribosomal protein L7-like 1 ISO (MGI:5605165|PMID:23211737), (MGI:5913376|PMID:27869233) RGD PMID:23211737 PMID:27869233 MGI:5605165 MGI:5913376 NCBI chr 9:16,508,477...16,516,502
Ensembl chr 9:16,508,799...16,513,120
JBrowse link
G Rrp7a ribosomal RNA processing 7 homolog A ISO (MGI:5605165|PMID:23211737), (MGI:5913376|PMID:27869233) RGD PMID:23211737 PMID:27869233 MGI:5605165 MGI:5913376 NCBI chr 7:123,980,251...123,990,139
Ensembl chr 7:123,980,251...123,990,139
JBrowse link
G Rtn4 reticulon 4 IEA
ISO
GO_REF:0000107
(MGI:5913376|PMID:27869233)
Ensembl
RGD
PMID:27869233 GO_REF:0000107 MGI:5913376 NCBI chr14:114,126,931...114,174,459
Ensembl chr14:114,126,943...114,174,458
JBrowse link
G Sf3b1 splicing factor 3b, subunit 1 ISO (MGI:5605165|PMID:23211737), (MGI:5913376|PMID:27869233) RGD PMID:23211737 PMID:27869233 MGI:5605165 MGI:5913376 NCBI chr 9:61,594,620...61,634,510
Ensembl chr 9:61,594,620...61,634,510
JBrowse link
G Sf3b6 splicing factor 3B, subunit 6 ISO (MGI:5605165|PMID:23211737), (MGI:5913376|PMID:27869233) RGD PMID:23211737 PMID:27869233 MGI:5605165 MGI:5913376 NCBI chr 6:29,991,232...29,999,668
Ensembl chr 6:29,991,307...29,999,410
JBrowse link
G Skil SKI-like proto-oncogene ISO MGI:2387096 (MGI:1858539|PMID:10811619) RGD PMID:10811619 MGI:1858539 NCBI chr 2:115,862,932...115,891,304
Ensembl chr 2:115,866,701...115,891,097
JBrowse link
G Supt6h SPT6 homolog, histone chaperone and transcription elongation factor ISO (MGI:5913376|PMID:27869233) RGD PMID:27869233 MGI:5913376 NCBI chr10:65,470,470...65,507,581
Ensembl chr10:65,470,471...65,507,581
JBrowse link
G Tead4 TEA domain transcription factor 4 ISO MGI:3763362 (MGI:3811945|PMID:18804437) RGD PMID:18804437 MGI:3811945 NCBI chr 4:161,542,566...161,619,848
Ensembl chr 4:161,540,130...161,587,222
JBrowse link
G Tjp1 tight junction protein 1 ISO (MGI:3797149|PMID:18423437) RGD PMID:18423437 MGI:3797149 NCBI chr 1:126,146,489...126,515,359
Ensembl chr 1:126,146,489...126,227,469
JBrowse link
G Tm4sf1 transmembrane 4 L six family member 1 ISO (MGI:5913376|PMID:27869233) RGD PMID:27869233 MGI:5913376 NCBI chr 2:147,382,866...147,392,062
Ensembl chr 2:147,382,866...147,392,062
JBrowse link
G Txnrd3 thioredoxin reductase 3 ISO (MGI:5913376|PMID:27869233) RGD PMID:27869233 MGI:5913376 NCBI chr 4:121,612,332...121,650,543
Ensembl chr 4:121,612,332...121,650,571
JBrowse link
G Uspl1 ubiquitin specific peptidase like 1 ISO (MGI:5913376|PMID:27869233) RGD PMID:27869233 MGI:5913376 NCBI chr12:6,930,018...6,957,027
Ensembl chr12:6,929,978...6,956,984
JBrowse link
G Wdr74 WD repeat domain 74 ISO (MGI:5287298|PMID:21799883), (MGI:5913376|PMID:27869233) RGD PMID:21799883 PMID:27869233 MGI:5287298 MGI:5913376 NCBI chr 1:224,933,906...224,938,659
Ensembl chr 1:224,933,529...224,938,662
JBrowse link
G Zp3 zona pellucida glycoprotein 3 IEA
ISO
ISS
GO_REF:0000107
(MGI:4943828|PMID:20382503)
GO_REF:0000024
Ensembl
RGD
UniProt
PMID:20382503 GO_REF:0000024 GO_REF:0000107 MGI:4943828 NCBI chr12:23,735,225...23,752,734
Ensembl chr12:23,735,223...23,742,190
JBrowse link
blastocyst growth term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ctr9 CTR9 homolog, Paf1/RNA polymerase II complex component ISO MGI:101893 (MGI:5528755|PMID:24036311) RGD PMID:24036311 MGI:5528755 NCBI chr 1:175,839,140...175,869,167
Ensembl chr 1:175,839,108...175,869,165
JBrowse link
G Ints1 integrator complex subunit 1 ISO MGI:3663683 (MGI:3722560|PMID:17544522) RGD PMID:17544522 MGI:3722560 NCBI chr12:16,950,704...16,974,896 JBrowse link
G Nbn nibrin IEA
ISO
ISS
GO_REF:0000107
(MGI:2680772|PMID:14612522)
GO_REF:0000024
Ensembl
RGD
UniProt
PMID:14612522 GO_REF:0000024 GO_REF:0000107 MGI:2680772 NCBI chr 5:29,622,347...29,656,877
Ensembl chr 5:29,622,281...29,656,864
JBrowse link
G Pou5f1 POU class 5 homeobox 1 ISO MGI:109345 (MGI:5528755|PMID:24036311) RGD PMID:24036311 MGI:5528755 NCBI chr20:3,747,231...3,751,994
Ensembl chr20:3,747,221...3,751,994
JBrowse link
G Rad51b RAD51 paralog B ISO MGI:3621480 (MGI:1349263|PMID:10567591) RGD PMID:10567591 MGI:1349263 NCBI chr 6:102,473,978...103,018,185
Ensembl chr 6:102,477,036...102,512,505
JBrowse link
G Rtf1 Rtf1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae) ISO (MGI:5528755|PMID:24036311) RGD PMID:24036311 MGI:5528755 NCBI chr 3:111,478,350...111,537,941
Ensembl chr 3:111,478,382...111,537,941
JBrowse link
G Smarca4 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 ISO MGI:2386105 (MGI:1929360|PMID:11163203) RGD PMID:11163203 MGI:1929360 NCBI chr 8:22,648,323...22,739,468
Ensembl chr 8:22,648,323...22,739,468
JBrowse link
G Ubtfl1 upstream binding transcription factor like 1 ISO (MGI:4414743|PMID:19915186) RGD PMID:19915186 MGI:4414743
G Ubtfl6-ps1 UBTF like 6 (pseudogene) ISO (MGI:4414743|PMID:19915186) RGD PMID:19915186 MGI:4414743 NCBI chr 8:17,525,070...17,530,404 JBrowse link
G Zfp830 zinc finger protein 830 ISO MGI:3583779 (MGI:3582017|PMID:15988037) RGD PMID:15988037 MGI:3582017 NCBI chr10:70,118,250...70,119,714
Ensembl chr10:70,118,250...70,119,716
JBrowse link
blastocyst hatching term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Akap3 A-kinase anchoring protein 3 ISO (MGI:5913376|PMID:27869233) RGD PMID:27869233 MGI:5913376 NCBI chr 4:159,399,686...159,425,512
Ensembl chr 4:159,403,501...159,425,629
JBrowse link
G Ankrd7 ankyrin repeat domain 7 ISO (MGI:5913376|PMID:27869233) RGD PMID:27869233 MGI:5913376 NCBI chr 4:45,564,542...45,618,932
Ensembl chr 4:45,567,573...45,586,228
JBrowse link
G Arhgdig Rho GDP dissociation inhibitor gamma ISO (MGI:5913376|PMID:27869233) RGD PMID:27869233 MGI:5913376
G Asf1b anti-silencing function 1B histone chaperone ISO (MGI:5913376|PMID:27869233) RGD PMID:27869233 MGI:5913376 NCBI chr19:25,077,918...25,092,491
Ensembl chr19:25,077,918...25,092,491
JBrowse link
G Bcor BCL6 co-repressor ISO (MGI:5913376|PMID:27869233) RGD PMID:27869233 MGI:5913376 NCBI chr  X:11,570,155...11,692,022
Ensembl chr  X:11,648,989...11,691,099
JBrowse link
G Ccdc24 coiled-coil domain containing 24 ISO (MGI:5913376|PMID:27869233) RGD PMID:27869233 MGI:5913376 NCBI chr 5:136,691,655...136,707,197
Ensembl chr 5:136,703,674...136,706,998
JBrowse link
G Ccdc62 coiled-coil domain containing 62 ISO (MGI:5913376|PMID:27869233) RGD PMID:27869233 MGI:5913376 NCBI chr12:38,057,532...38,093,916
Ensembl chr12:38,057,556...38,093,050
JBrowse link
G Cmtm3 CKLF-like MARVEL transmembrane domain containing 3 ISO (MGI:5913376|PMID:27869233) RGD PMID:27869233 MGI:5913376 NCBI chr19:830,874...838,528
Ensembl chr19:830,877...838,099
JBrowse link
G Coprs coordinator of PRMT5 and differentiation stimulator ISO (MGI:5913376|PMID:27869233) RGD PMID:27869233 MGI:5913376 NCBI chr16:80,826,681...80,831,791
Ensembl chr16:80,826,681...80,831,791
JBrowse link
G Ctr9 CTR9 homolog, Paf1/RNA polymerase II complex component ISO (MGI:5913376|PMID:27869233) RGD PMID:27869233 MGI:5913376 NCBI chr 1:175,839,140...175,869,167
Ensembl chr 1:175,839,108...175,869,165
JBrowse link
G Fbll1 fibrillarin-like 1 ISO (MGI:5913376|PMID:27869233) RGD PMID:27869233 MGI:5913376 NCBI chr10:20,620,957...20,622,600
Ensembl chr10:20,620,957...20,622,600
JBrowse link
G Grn granulin precursor ISO (MGI:3589098|PMID:15901638) RGD PMID:15901638 MGI:3589098 NCBI chr10:90,377,103...90,383,207
Ensembl chr10:90,376,933...90,383,205
JBrowse link
G Hcfc1 host cell factor C1 ISO (MGI:5913376|PMID:27869233) RGD PMID:27869233 MGI:5913376 NCBI chr  X:156,812,012...156,837,227
Ensembl chr  X:156,812,064...156,837,227
JBrowse link
G Hs3st6 heparan sulfate-glucosamine 3-sulfotransferase 6 ISO (MGI:5913376|PMID:27869233) RGD PMID:27869233 MGI:5913376 NCBI chr10:14,122,856...14,128,984
Ensembl chr10:14,122,878...14,128,983
JBrowse link
G LOC688459 hypothetical protein LOC688459 ISO
IBA
(MGI:5913376|PMID:27869233)
PMID:21873635
RGD PMID:27869233, PMID:21873635 MGI:5913376, RGD:13792537 NCBI chr 9:23,420,654...23,424,832
Ensembl chr 9:23,420,654...23,424,832
JBrowse link
G Lpar6 lysophosphatidic acid receptor 6 ISO (MGI:5913376|PMID:27869233) RGD PMID:27869233 MGI:5913376 NCBI chr15:55,126,953...55,128,762
Ensembl chr15:55,126,953...55,128,761
JBrowse link
G Ndufa2 NADH:ubiquinone oxidoreductase subunit A2 ISO (MGI:5913376|PMID:27869233) RGD PMID:27869233 MGI:5913376 NCBI chr18:29,585,671...29,587,760
Ensembl chr18:29,585,671...29,587,760
JBrowse link
G Necab1 N-terminal EF-hand calcium binding protein 1 ISO (MGI:5913376|PMID:27869233) RGD PMID:27869233 MGI:5913376 NCBI chr 5:28,507,596...28,737,556
Ensembl chr 5:28,504,558...28,737,719
JBrowse link
G Pemt phosphatidylethanolamine N-methyltransferase ISO (MGI:5913376|PMID:27869233) RGD PMID:27869233 MGI:5913376 NCBI chr10:46,339,821...46,404,640
Ensembl chr10:46,339,821...46,404,642
JBrowse link
G Phf6 PHD finger protein 6 ISO (MGI:5913376|PMID:27869233) RGD PMID:27869233 MGI:5913376 NCBI chr  X:158,698,353...158,739,855
Ensembl chr  X:158,698,356...158,739,838
Ensembl chr  X:158,698,356...158,739,838
JBrowse link
G Plpp4 phospholipid phosphatase 4 ISO (MGI:5913376|PMID:27869233) RGD PMID:27869233 MGI:5913376 NCBI chr 1:202,432,366...202,560,628
Ensembl chr 1:202,432,366...202,560,628
JBrowse link
G Ppp4r4 protein phosphatase 4, regulatory subunit 4 ISO (MGI:5913376|PMID:27869233) RGD PMID:27869233 MGI:5913376 NCBI chr 6:127,400,585...127,497,280
Ensembl chr 6:127,400,585...127,497,280
JBrowse link
G Prss29 serine protease 29 ISO MGI:2149951 (MGI:3703092|PMID:17156484) RGD PMID:17156484 MGI:3703092 NCBI chr10:14,678,286...14,681,877
Ensembl chr10:14,678,278...14,681,888
JBrowse link
G Rbbp8 RB binding protein 8, endonuclease ISO MGI:3577029 (MGI:3575978|PMID:15831459) RGD PMID:15831459 MGI:3575978 NCBI chr18:3,134,630...3,227,702
Ensembl chr18:3,162,543...3,227,688
JBrowse link
G Slc25a34 solute carrier family 25, member 34 IEA
ISO
GO_REF:0000107
(MGI:5913376|PMID:27869233)
Ensembl
RGD
PMID:27869233 GO_REF:0000107 MGI:5913376 NCBI chr 5:160,175,206...160,179,978
Ensembl chr 5:160,176,124...160,179,978
JBrowse link
G Slc35e2b solute carrier family 35, member E2B ISO (MGI:5913376|PMID:27869233) RGD PMID:27869233 MGI:5913376 NCBI chr 5:173,024,335...173,050,228
Ensembl chr 5:173,024,335...173,046,194
JBrowse link
G Smarca4 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 ISO MGI:2386105 (MGI:1929360|PMID:11163203) RGD PMID:11163203 MGI:1929360 NCBI chr 8:22,648,323...22,739,468
Ensembl chr 8:22,648,323...22,739,468
JBrowse link
G Smarcb1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1 ISO MGI:2387974|MGI:2388033 (MGI:1932782|PMID:11263494), (MGI:1933896|PMID:11313485) RGD PMID:11263494 PMID:11313485 MGI:1932782 MGI:1933896 NCBI chr20:13,679,955...13,702,821
Ensembl chr20:13,680,716...13,704,931
JBrowse link
G Smim14 small integral membrane protein 14 ISO (MGI:5913376|PMID:27869233) RGD PMID:27869233 MGI:5913376 NCBI chr14:44,413,636...44,460,044
Ensembl chr14:44,413,636...44,457,239
JBrowse link
G St8sia6 ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 6 ISO (MGI:5913376|PMID:27869233) RGD PMID:27869233 MGI:5913376 NCBI chr17:80,960,785...81,002,830
Ensembl chr17:80,960,785...81,002,838
JBrowse link
G Stmn3 stathmin 3 IEA
ISO
GO_REF:0000107
(MGI:5913376|PMID:27869233)
Ensembl
RGD
PMID:27869233 GO_REF:0000107 MGI:5913376 NCBI chr 3:176,808,016...176,816,108
Ensembl chr 3:176,808,017...176,816,162
JBrowse link
G Suds3 SDS3 homolog, SIN3A corepressor complex component ISO (MGI:5913376|PMID:27869233) RGD PMID:27869233 MGI:5913376 NCBI chr12:45,199,012...45,221,507
Ensembl chr12:45,199,577...45,221,512
JBrowse link
G Suv39h1 suppressor of variegation 3-9 homolog 1 ISO (MGI:5913376|PMID:27869233) RGD PMID:27869233 MGI:5913376 NCBI chr  X:146,532,002...146,533,538 JBrowse link
G Tbl1xr1 TBL1X receptor 1 ISO (MGI:5913376|PMID:27869233) RGD PMID:27869233 MGI:5913376 NCBI chr 2:107,221,913...107,359,229
Ensembl chr 2:107,233,054...107,359,229
JBrowse link
G Ube2a ubiquitin-conjugating enzyme E2A ISO (MGI:5913376|PMID:27869233) RGD PMID:27869233 MGI:5913376 NCBI chr  X:123,486,988...123,497,726
Ensembl chr  X:123,486,989...123,497,726
JBrowse link
G Zbed6 zinc finger, BED-type containing 6 ISO (MGI:5913376|PMID:27869233) RGD PMID:27869233 MGI:5913376 NCBI chr13:50,196,143...50,211,670 JBrowse link
G Zfp14 ZFP14 zinc finger protein ISO (MGI:5913376|PMID:27869233) RGD PMID:27869233 MGI:5913376 NCBI chr 1:88,350,361...88,367,370
Ensembl chr 1:88,350,361...88,361,851
JBrowse link
G Zfp420 zinc finger protein 420 ISO (MGI:5913376|PMID:27869233) RGD PMID:27869233 MGI:5913376 NCBI chr 1:88,531,975...88,564,480
Ensembl chr 1:88,542,035...88,544,156
JBrowse link
BMP signaling pathway involved in mesodermal cell fate specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Etv2 ETS variant transcription factor 2 ISO (MGI:4415813|PMID:18462699) RGD PMID:18462699 MGI:4415813 NCBI chr 1:89,091,239...89,094,570
Ensembl chr 1:89,091,239...89,094,530
JBrowse link
branching involved in labyrinthine layer morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adm adrenomedullin ISO MGI:2176598 (MGI:3689296|PMID:16981008) RGD PMID:16981008 MGI:3689296 NCBI chr 1:175,443,189...175,447,260
Ensembl chr 1:175,445,088...175,447,259
JBrowse link
G Fgfr2 fibroblast growth factor receptor 2 ISO MGI:2153790 (MGI:1197797|PMID:9435295) RGD PMID:9435295 MGI:1197797 NCBI chr 1:200,590,951...200,696,946
Ensembl chr 1:200,590,953...200,696,928
JBrowse link
G Fzd5 frizzled class receptor 5 IEA
ISO
GO_REF:0000107
MGI:3583769 (MGI:5494335|PMID:23610556)
Ensembl
RGD
PMID:23610556 GO_REF:0000107 MGI:5494335 NCBI chr 9:71,443,784...71,445,541
Ensembl chr 9:71,443,588...71,445,739
JBrowse link
G Gcm1 glial cells missing transcription factor 1 ISO MGI:2183479 (MGI:1860502|PMID:10888880) RGD PMID:10888880 MGI:1860502 NCBI chr 8:85,355,766...85,369,002
Ensembl chr 8:85,355,766...85,369,002
JBrowse link
G Grb2 growth factor receptor bound protein 2 ISO MGI:2677457 (MGI:1934095|PMID:11369229) RGD PMID:11369229 MGI:1934095 NCBI chr10:104,193,953...104,263,071
Ensembl chr10:104,193,955...104,263,071
JBrowse link
G Il10 interleukin 10 ISO MGI:1857199 (MGI:3664708|PMID:12842419) RGD PMID:12842419 MGI:3664708 NCBI chr13:47,738,933...47,743,392
Ensembl chr13:47,739,526...47,743,392
JBrowse link
G Llgl2 LLGL scribble cell polarity complex component 2 ISO MGI:4331862 (MGI:5052233|PMID:21606200) RGD PMID:21606200 MGI:5052233 NCBI chr10:104,367,826...104,403,726
Ensembl chr10:104,368,247...104,403,724
JBrowse link
G Rspo3 R-spondin 3 ISO MGI:3695687 (MGI:3695333|PMID:16963017) RGD PMID:16963017 MGI:3695333 NCBI chr 1:30,681,648...30,768,038
Ensembl chr 1:30,681,681...30,766,860
JBrowse link
G Socs3 suppressor of cytokine signaling 3 IEA
ISO
GO_REF:0000107
MGI:2180861 (MGI:2137984|PMID:11481489)
Ensembl
RGD
PMID:11481489 GO_REF:0000107 MGI:2137984 NCBI chr10:106,973,863...106,976,969
Ensembl chr10:106,975,178...106,976,040
JBrowse link
G Spint1 serine peptidase inhibitor, Kunitz type 1 ISO MGI:3709554 (MGI:3700412|PMID:17174946) RGD PMID:17174946 MGI:3700412 NCBI chr 3:111,049,132...111,061,991
Ensembl chr 3:111,049,118...111,062,011
JBrowse link
cell differentiation involved in embryonic placenta development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Eomes eomesodermin ISO (MGI:1354065|PMID:10716450) RGD PMID:10716450 MGI:1354065 NCBI chr 8:127,144,367...127,152,618
Ensembl chr 8:127,144,903...127,151,493
JBrowse link
G Gcm1 glial cells missing transcription factor 1 ISO
IBA
MGI:2183479 (MGI:1860502|PMID:10888880)
PMID:21873635
RGD PMID:10888880, PMID:21873635 MGI:1860502, RGD:13792537 NCBI chr 8:85,355,766...85,369,002
Ensembl chr 8:85,355,766...85,369,002
JBrowse link
G Krt19 keratin 19 ISO MGI:96705 (MGI:1926669|PMID:11062258) RGD PMID:11062258 MGI:1926669 NCBI chr10:88,055,843...88,060,560
Ensembl chr10:88,055,841...88,060,561
JBrowse link
G Krt8 keratin 8 ISO MGI:96693 (MGI:1926669|PMID:11062258) RGD PMID:11062258 MGI:1926669 NCBI chr 7:143,596,511...143,603,745
Ensembl chr 7:143,596,511...143,603,803
JBrowse link
G Stk3 serine/threonine kinase 3 IEA
ISO
GO_REF:0000107
MGI:1929004 (MGI:4412133|PMID:19786569)
Ensembl
RGD
PMID:19786569 GO_REF:0000107 MGI:4412133 NCBI chr 7:73,617,926...73,883,896
Ensembl chr 7:73,618,644...73,883,812
JBrowse link
G Stk4 serine/threonine kinase 4 ISO MGI:1928487 (MGI:4412133|PMID:19786569) RGD PMID:19786569 MGI:4412133 NCBI chr 3:160,467,552...160,546,540
Ensembl chr 3:160,467,552...160,546,540
JBrowse link
cell fate commitment involved in formation of primary germ layer term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pou5f1 POU class 5 homeobox 1 ISO (PMID:19736317) RGD PMID:19736317 NCBI chr20:3,747,231...3,751,994
Ensembl chr20:3,747,221...3,751,994
JBrowse link
cell migration involved in gastrulation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Amot angiomotin ISO MGI:2656627 (MGI:2655854|PMID:12676095) RGD PMID:12676095 MGI:2655854 NCBI chr  X:116,751,231...116,810,238
Ensembl chr  X:116,751,230...116,792,864
JBrowse link
G Cer1 cerberus 1, DAN family BMP antagonist ISO MGI:107405 (MGI:3042338|PMID:15004567) RGD PMID:15004567 MGI:3042338 NCBI chr 5:101,003,019...101,006,375
Ensembl chr 5:101,003,023...101,006,375
JBrowse link
G Gpc3 glypican 3 ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr  X:139,579,268...139,947,093
Ensembl chr  X:139,579,268...139,916,883
JBrowse link
G Lefty1 left right determination factor 1 ISO MGI:1201414 (MGI:3042338|PMID:15004567) RGD PMID:15004567 MGI:3042338 NCBI chr13:99,212,778...99,217,786
Ensembl chr13:99,214,389...99,217,786
JBrowse link
G Lrp5 LDL receptor related protein 5 ISO MGI:1298218 (MGI:3045836|PMID:15142971) RGD PMID:15142971 MGI:3045836 NCBI chr 1:218,816,833...218,920,147
Ensembl chr 1:218,816,841...218,920,094
JBrowse link
G Lrp6 LDL receptor related protein 6 ISO MGI:1278315 (MGI:3045836|PMID:15142971) RGD PMID:15142971 MGI:3045836 NCBI chr 4:168,194,054...168,323,962
Ensembl chr 4:168,194,927...168,323,751
JBrowse link
G Megf8 multiple EGF-like-domains 8 IEA
ISO
GO_REF:0000107
(PMID:23063620)
Ensembl
RGD
PMID:23063620 GO_REF:0000107 NCBI chr 1:82,184,671...82,234,045
Ensembl chr 1:82,185,034...82,234,045
JBrowse link
G Mixl1 Mix paired-like homeobox 1 ISO MGI:2387829 (MGI:3695524|PMID:17151016) RGD PMID:17151016 MGI:3695524 NCBI chr13:97,278,258...97,282,299
Ensembl chr13:98,973,041...98,975,426
Ensembl chr13:98,973,041...98,975,426
JBrowse link
G Nckap1 NCK-associated protein 1 ISO MGI:3578145 (MGI:3701029|PMID:16831833) RGD PMID:16831833 MGI:3701029 NCBI chr 3:67,725,180...67,804,680
Ensembl chr 3:67,725,947...67,787,990
JBrowse link
G Nodal nodal growth differentiation factor ISO (MGI:3042338|PMID:15004567) RGD PMID:15004567 MGI:3042338 NCBI chr20:31,035,729...31,044,096
Ensembl chr20:31,035,729...31,044,096
JBrowse link
G Ric8a RIC8 guanine nucleotide exchange factor A IEA
ISO
GO_REF:0000107
MGI:3608888 (MGI:4849883|PMID:21069829)
Ensembl
RGD
PMID:21069829 GO_REF:0000107 MGI:4849883 NCBI chr 1:213,606,599...213,612,905
Ensembl chr 1:213,606,599...213,612,904
JBrowse link
G Sox17 SRY-box transcription factor 17 ISO MGI:3717121 (MGI:4946462|PMID:21146513) RGD PMID:21146513 MGI:4946462 NCBI chr 5:14,890,318...14,895,907
Ensembl chr 5:14,890,408...14,895,907
JBrowse link
cell migration involved in mesendoderm migration term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fgf8 fibroblast growth factor 8 ISO MGI:2150346 (MGI:1341493|PMID:10421635) RGD PMID:10421635 MGI:1341493 NCBI chr 1:265,492,949...265,498,965
Ensembl chr 1:265,493,124...265,498,831
JBrowse link
cell-cell adhesion involved in gastrulation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ric8a RIC8 guanine nucleotide exchange factor A IEA
ISO
GO_REF:0000107
MGI:3608888 (MGI:4849883|PMID:21069829)
Ensembl
RGD
PMID:21069829 GO_REF:0000107 MGI:4849883 NCBI chr 1:213,606,599...213,612,905
Ensembl chr 1:213,606,599...213,612,904
JBrowse link
chordate embryonic development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Brca1 BRCA1, DNA repair associated IEA
IBA
ISO
GO_REF:0000107
PMID:21873635
MGI:1930613 (MGI:707942|PMID:9171368)
Ensembl
RGD
PMID:9171368, PMID:21873635 GO_REF:0000107 MGI:707942, RGD:13792537 NCBI chr10:89,394,821...89,455,093
Ensembl chr10:89,394,803...89,454,681
JBrowse link
G Brca2 BRCA2, DNA repair associated ISO MGI:1930615 (MGI:707942|PMID:9171368) RGD PMID:9171368 MGI:707942 NCBI chr12:503,660...544,754
Ensembl chr12:504,007...544,748
JBrowse link
G Cenpu centromere protein U ISO MGI:5522669 (MGI:5517606|PMID:23724000) RGD PMID:23724000 MGI:5517606 NCBI chr16:48,898,032...48,921,248
Ensembl chr16:48,897,982...48,921,242
JBrowse link
G Fas Fas cell surface death receptor IEP RGD PMID:11331665 RGD:8686426 NCBI chr 1:252,589,785...252,624,790
Ensembl chr 1:252,589,785...252,624,790
JBrowse link
G Lims1 LIM zinc finger domain containing 1 ISO MGI:3577473 (MGI:3575965|PMID:15798193) RGD PMID:15798193 MGI:3575965 NCBI chr20:27,895,981...28,004,767
Ensembl chr20:27,954,433...28,002,082
JBrowse link
G Trip6 thyroid hormone receptor interactor 6 ISO (PMID:10826496) RGD PMID:10826496 NCBI chr12:22,451,596...22,456,003
Ensembl chr12:22,451,596...22,456,003
JBrowse link
G Vezt vezatin, adherens junctions transmembrane protein ISO (MGI:3610287|PMID:16199027) RGD PMID:16199027 MGI:3610287 NCBI chr 7:34,888,487...34,951,712
Ensembl chr 7:34,888,491...34,951,644
JBrowse link
chorio-allantoic fusion term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp5 bone morphogenetic protein 5 ISO UniProtKB:P23359 (MGI:1332253|PMID:10079236) RGD PMID:10079236 MGI:1332253 NCBI chr 8:82,669,466...82,950,273
Ensembl chr 8:82,878,941...82,950,273
JBrowse link
G Bmp7 bone morphogenetic protein 7 ISO UniProtKB:P49003 (MGI:1332253|PMID:10079236) RGD PMID:10079236 MGI:1332253 NCBI chr 3:170,879,972...170,955,820
Ensembl chr 3:170,879,973...170,955,399
JBrowse link
G Ccn1 cellular communication network factor 1 IEA
ISO
GO_REF:0000107
MGI:2446577 (MGI:2446415|PMID:12446788)
Ensembl
RGD
PMID:12446788 GO_REF:0000107 MGI:2446415 NCBI chr 2:251,529,354...251,532,312
Ensembl chr 2:251,529,354...251,532,312
JBrowse link
G Dnajb6 DnaJ heat shock protein family (Hsp40) member B6 ISO MGI:2151092 (MGI:1329806|PMID:10021343) RGD PMID:10021343 MGI:1329806 NCBI chr 4:2,711,329...2,774,969
Ensembl chr 4:2,711,385...2,774,890
JBrowse link
G Erf Ets2 repressor factor ISO MGI:3719472 (MGI:3718929|PMID:17502352) RGD PMID:17502352 MGI:3718929 NCBI chr 1:82,112,449...82,120,902
Ensembl chr 1:82,112,449...82,120,902
JBrowse link
G Itga4 integrin subunit alpha 4 ISO MGI:1857206 (MGI:70927|PMID:7539359) RGD PMID:7539359 MGI:70927 NCBI chr 3:66,178,745...66,265,547
Ensembl chr 3:66,193,059...66,263,960
JBrowse link
G Lef1 lymphoid enhancer binding factor 1 IEA
ISO
GO_REF:0000107
MGI:98504 (MGI:1334099|PMID:10090727)
Ensembl
RGD
PMID:10090727 GO_REF:0000107 MGI:1334099 NCBI chr 2:236,232,115...236,345,061
Ensembl chr 2:236,233,239...236,345,056
JBrowse link
G Vcam1 vascular cell adhesion molecule 1 ISO MGI:1857452|MGI:2153830 (MGI:70297|PMID:7530222), (MGI:70924|PMID:7539357) RGD PMID:7530222 PMID:7539357 MGI:70297 MGI:70924 NCBI chr 2:219,071,193...219,090,931
Ensembl chr 2:219,071,193...219,097,619
JBrowse link
G Wnt7b Wnt family member 7B ISO MGI:2387443 (MGI:2150456|PMID:11543617) RGD PMID:11543617 MGI:2150456 NCBI chr 7:126,423,418...126,465,724
Ensembl chr 7:126,420,656...126,465,723
JBrowse link
G Zfp36l1 zinc finger protein 36, C3H type-like 1 ISO MGI:3050540 (MGI:3047495|PMID:15226444) RGD PMID:15226444 MGI:3047495 NCBI chr 6:103,308,032...103,313,074
Ensembl chr 6:103,308,045...103,313,074
JBrowse link
closure of optic fissure term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Phactr4 phosphatase and actin regulator 4 ISO (MGI:3719969|PMID:17609112) RGD PMID:17609112 MGI:3719969 NCBI chr 5:150,533,895...150,609,423
Ensembl chr 5:150,546,430...150,609,352
JBrowse link
G Sox11 SRY-box transcription factor 11 ISS
ISO
GO_REF:0000024
(MGI:3797299|PMID:18423449)
UniProt
RGD
PMID:18423449 GO_REF:0000024 MGI:3797299 NCBI chr 6:46,629,967...46,631,988
Ensembl chr 6:46,629,974...46,631,983
JBrowse link
cochlea morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cthrc1 collagen triple helix repeat containing 1 ISO MGI:1915838 (MGI:3814781|PMID:18606138) RGD PMID:18606138 MGI:3814781 NCBI chr 7:77,966,722...77,977,004
Ensembl chr 7:77,966,722...77,977,004
JBrowse link
G Dvl1 dishevelled segment polarity protein 1 ISO MGI:106613 (MGI:3589836|PMID:16116426) RGD PMID:16116426 MGI:3589836 NCBI chr 5:173,295,948...173,308,014
Ensembl chr 5:173,296,270...173,307,945
JBrowse link
G Dvl2 dishevelled segment polarity protein 2 ISO MGI:108100|MGI:94941 (MGI:3589836|PMID:16116426), (MGI:3821448|PMID:19008950) RGD PMID:16116426 PMID:19008950 MGI:3589836 MGI:3821448 NCBI chr10:56,609,810...56,619,269
Ensembl chr10:56,610,051...56,619,269
JBrowse link
G Dvl3 dishevelled segment polarity protein 3 ISO MGI:106613|MGI:2135272 (MGI:3821448|PMID:19008950) RGD PMID:19008950 MGI:3821448 NCBI chr11:84,051,177...84,068,479
Ensembl chr11:84,051,078...84,068,302
JBrowse link
G Eya1 EYA transcriptional coactivator and phosphatase 1 ISO MGI:1857803 (MGI:1335261|PMID:10072433) RGD PMID:10072433 MGI:1335261 NCBI chr 5:4,275,728...4,495,525
Ensembl chr 5:4,373,626...4,513,142
JBrowse link
G Frzb frizzled-related protein ISO MGI:98958 (MGI:3714704|PMID:17433286) RGD PMID:17433286 MGI:3714704 NCBI chr 3:67,635,604...67,668,772
Ensembl chr 3:67,635,607...67,668,772
JBrowse link
G Fzd2 frizzled class receptor 2 IEA
ISO
GO_REF:0000107
MGI:2135272 (MGI:4837757|PMID:20940229)
Ensembl
RGD
PMID:20940229 GO_REF:0000107 MGI:4837757 NCBI chr10:90,550,147...90,552,057
Ensembl chr10:90,550,147...90,552,057
JBrowse link
G Gli2 GLI family zinc finger 2 ISO MGI:1857509 (MGI:3709667|PMID:17395647) RGD PMID:17395647 MGI:3709667 NCBI chr13:34,829,021...35,049,172
Ensembl chr13:34,829,139...35,048,444
JBrowse link
G Grhl3 grainyhead-like transcription factor 3 ISO MGI:2135272 (MGI:4819429|PMID:20643356) RGD PMID:20643356 MGI:4819429 NCBI chr 5:153,893,039...153,925,045
Ensembl chr 5:153,893,039...153,924,896
JBrowse link
G Hoxa1 homeobox A1 ISO (PMID:16155570) RGD PMID:16155570 NCBI chr 4:82,124,358...82,127,182
Ensembl chr 4:82,125,406...82,127,066
JBrowse link
G Hpn hepsin ISS
ISO
GO_REF:0000024
(MGI:5306554|PMID:20683358)
UniProt
RGD
PMID:20683358 GO_REF:0000024 MGI:5306554 NCBI chr 1:89,534,112...89,549,575
Ensembl chr 1:89,534,106...89,543,967
JBrowse link
G Myo3a myosin IIIA ISO (MGI:5766107|PMID:26754646) RGD PMID:26754646 MGI:5766107 NCBI chr17:88,952,635...89,167,538
Ensembl chr17:88,963,981...89,167,018
JBrowse link
G Myo3b myosin IIIB ISO (MGI:5766107|PMID:26754646) RGD PMID:26754646 MGI:5766107 NCBI chr 3:56,355,433...56,717,740
Ensembl chr 3:56,355,431...56,584,547
JBrowse link
G Neurog1 neurogenin 1 ISO UniProtKB:Q6ZNK6|UniProtKB:Q8TF63 (PMID:23419067) RGD PMID:23419067 NCBI chr17:9,154,656...9,156,175
Ensembl chr17:9,154,656...9,156,175
JBrowse link
G Pax2 paired box 2 ISS
ISO
GO_REF:0000024
MGI:1857673|UniProtKB:Q00288 (MGI:3702803|PMID:16916509), (MGI:4822275|PMID:20727173), (MGI:84247|PMID:8951055)
UniProt
RGD
PMID:8951055 PMID:16916509 PMID:20727173 GO_REF:0000024 MGI:3702803 MGI:4822275 MGI:84247 NCBI chr 1:264,493,579...264,585,073
Ensembl chr 1:264,504,591...264,583,329
JBrowse link
G Pou3f4 POU class 3 homeobox 4 ISS
ISO
GO_REF:0000024
UniProtKB:P70323 (MGI:5284768|PMID:18231833)
UniProt
RGD
PMID:18231833 GO_REF:0000024 MGI:5284768 NCBI chr  X:82,143,789...82,145,066
Ensembl chr  X:82,143,789...82,145,066
JBrowse link
G Ptk7 protein tyrosine kinase 7 ISO MGI:3640803 (MGI:4830023|PMID:20704721) RGD PMID:20704721 MGI:4830023 NCBI chr 9:16,662,588...16,729,888
Ensembl chr 9:16,702,460...16,729,030
JBrowse link
G Rac1 Rac family small GTPase 1 ISO MGI:2663662|MGI:2663669 (MGI:4430014|PMID:20016102) RGD PMID:20016102 MGI:4430014 NCBI chr12:13,090,316...13,111,841
Ensembl chr12:13,090,172...13,111,873
JBrowse link
G Six1 SIX homeobox 1 ISO MGI:2655195 (MGI:2671031|PMID:12874121) RGD PMID:12874121 MGI:2671031 NCBI chr 6:95,929,060...95,934,296
Ensembl chr 6:95,929,060...95,934,296
JBrowse link
G Sox9 SRY-box transcription factor 9 ISS
ISO
GO_REF:0000024
MGI:2385468|MGI:3841145 (MGI:4454502|PMID:20346939)
UniProt
RGD
PMID:20346939 GO_REF:0000024 MGI:4454502 NCBI chr10:101,288,528...101,294,030
Ensembl chr10:101,288,489...101,293,379
JBrowse link
G Tbx1 T-box transcription factor 1 ISS
ISO
GO_REF:0000024
MGI:2179136|UniProtKB:P62515 (MGI:3765363|PMID:17825816), (MGI:5284768|PMID:18231833)
UniProt
RGD
PMID:17825816 PMID:18231833 GO_REF:0000024 MGI:3765363 MGI:5284768 NCBI chr11:86,552,022...86,561,647
Ensembl chr11:86,552,022...86,560,969
JBrowse link
G Tbx18 T-box transcription factor 18 ISO MGI:3044915 (MGI:3788971|PMID:18353863) RGD PMID:18353863 MGI:3788971 NCBI chr 8:95,359,354...95,387,363
Ensembl chr 8:95,359,354...95,387,363
JBrowse link
G Tifab TIFA inhibitor ISO UniProtKB:Q8TF63|UniProtKB:Q92886 (PMID:23419067) RGD PMID:23419067 NCBI chr17:9,234,948...9,239,266
Ensembl chr17:9,236,249...9,239,265
JBrowse link
G Tshr thyroid stimulating hormone receptor IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr 6:115,170,290...115,306,871
Ensembl chr 6:115,170,865...115,306,871
JBrowse link
G Tshr-ps1 thyroid stimulating hormone receptor, pseudogene 1 ISO (MGI:3652455|PMID:10575115) RGD PMID:10575115 MGI:3652455 NCBI chr 4:93,447,412...93,448,194 JBrowse link
G Vangl2 VANGL planar cell polarity protein 2 ISO MGI:108100|MGI:1857642|MGI:1888513|MGI:2655333|MGI:98958 (MGI:3589836|PMID:16116426), (MGI:3714704|PMID:17433286), (MGI:3814781|PMID:18606138), (MGI:3821448|PMID:19008950), (MGI:4819429|PMID:20643356), (MGI:4837757|PMID:20940229) RGD PMID:16116426 PMID:17433286 PMID:18606138 PMID:19008950 PMID:20643356 PMID:20940229 MGI:3589836 MGI:3714704 MGI:3814781 MGI:3821448 MGI:4819429 MGI:4837757 NCBI chr13:90,379,203...90,405,627
Ensembl chr13:90,380,632...90,405,591
JBrowse link
G Wnt5a Wnt family member 5A IEA
ISO
GO_REF:0000107
MGI:1857617|MGI:2135272 (MGI:3714704|PMID:17433286)
Ensembl
RGD
PMID:17433286 GO_REF:0000107 MGI:3714704 NCBI chr16:4,469,451...4,490,271
Ensembl chr16:4,469,468...4,489,860
JBrowse link
G Zeb1 zinc finger E-box binding homeobox 1 IEA
ISO
GO_REF:0000107
MGI:1861230 (MGI:5294688|PMID:21980308)
Ensembl
RGD
PMID:21980308 GO_REF:0000107 MGI:5294688 NCBI chr17:54,656,627...54,714,920
Ensembl chr17:54,658,463...54,714,914
JBrowse link
convergent extension involved in gastrulation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nphp3 nephrocystin 3 ISO UniProtKB:Q6AZT7 (PMID:18371931) RGD PMID:18371931 NCBI chr 8:112,526,553...112,575,745
Ensembl chr 8:112,526,553...112,575,745
JBrowse link
convergent extension involved in neural plate elongation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dvl1 dishevelled segment polarity protein 1 ISO MGI:106613 (MGI:3624185|PMID:16571627) RGD PMID:16571627 MGI:3624185 NCBI chr 5:173,295,948...173,308,014
Ensembl chr 5:173,296,270...173,307,945
JBrowse link
G Dvl2 dishevelled segment polarity protein 2 ISO MGI:2135272|MGI:2429760|MGI:94941 (MGI:3624185|PMID:16571627) RGD PMID:16571627 MGI:3624185 NCBI chr10:56,609,810...56,619,269
Ensembl chr10:56,610,051...56,619,269
JBrowse link
G Vangl2 VANGL planar cell polarity protein 2 ISO MGI:106613|MGI:1857642 (MGI:3624185|PMID:16571627), (MGI:3703464|PMID:17229766) RGD PMID:16571627 PMID:17229766 MGI:3624185 MGI:3703464 NCBI chr13:90,379,203...90,405,627
Ensembl chr13:90,380,632...90,405,591
JBrowse link
convergent extension involved in somitogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Sfrp1 secreted frizzled-related protein 1 IEA
ISO
GO_REF:0000107
MGI:108078|MGI:1860298 (MGI:3793375|PMID:18257070)
Ensembl
RGD
PMID:18257070 GO_REF:0000107 MGI:3793375 NCBI chr16:73,372,007...73,410,777
Ensembl chr16:73,372,007...73,410,777
JBrowse link
DNA demethylation of male pronucleus term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Stpg4 sperm-tail PG-rich repeat containing 4 ISO
IBA
(MGI:5762940|PMID:23560077)
PMID:21873635
RGD PMID:23560077, PMID:21873635 MGI:5762940, RGD:13792537 NCBI chr 6:11,014,596...11,063,509
Ensembl chr 6:11,022,034...11,063,092
JBrowse link
G Tet3 tet methylcytosine dioxygenase 3 ISO (MGI:5289702|PMID:21892189), (MGI:5432962|PMID:22722204), (MGI:5465527|PMID:21407207) RGD PMID:21407207 PMID:21892189 PMID:22722204 MGI:5289702 MGI:5432962 MGI:5465527 NCBI chr 4:115,060,702...115,160,800
Ensembl chr 4:115,066,309...115,157,263
JBrowse link
DNA methylation involved in embryo development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dnmt1 DNA methyltransferase 1 IEA
ISO
GO_REF:0000107
MGI:1857157|MGI:3613486|MGI:5566775 (MGI:49689|PMID:1606615), (MGI:6270117|PMID:29117290)
Ensembl
RGD
PMID:1606615 PMID:29117290 GO_REF:0000107 MGI:49689 MGI:6270117 NCBI chr 8:21,922,515...21,968,495
Ensembl chr 8:21,922,515...21,968,495
JBrowse link
G Dnmt3a DNA methyltransferase 3 alpha ISO MGI:1261819 (MGI:1347183|PMID:10555141), (MGI:3045942|PMID:15215868), (MGI:5014027|PMID:20385583) RGD PMID:10555141 PMID:15215868 PMID:20385583 MGI:1347183 MGI:3045942 MGI:5014027 NCBI chr 6:28,205,375...28,346,052
Ensembl chr 6:28,235,695...28,340,577
JBrowse link
G Dnmt3b DNA methyltransferase 3 beta ISO MGI:1261827 (MGI:1347183|PMID:10555141), (PMID:18814855) RGD PMID:10555141 PMID:18814855 MGI:1347183 NCBI chr 3:149,131,541...149,170,061
Ensembl chr 3:149,131,785...149,208,786
JBrowse link
G Trim28 tripartite motif-containing 28 ISO MGI:1928907 (MGI:5319411|PMID:22495301) RGD PMID:22495301 MGI:5319411 NCBI chr 1:65,544,369...65,551,043
Ensembl chr 1:65,544,373...65,551,043
JBrowse link
G Zfp57 zinc finger protein 57 ISO
ISS
(PMID:18622393)
(MGI:3826319|PMID:18854139)
GO_REF:0000024
RGD
UniProt
PMID:18622393 PMID:18854139 GO_REF:0000024 MGI:3826319 NCBI chr20:2,014,177...2,020,488
Ensembl chr20:2,014,170...2,020,537
JBrowse link
dorsal/ventral neural tube patterning term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp4 bone morphogenetic protein 4 IEA
ISO
GO_REF:0000107
(MGI:3046395|PMID:15218525)
Ensembl
RGD
PMID:15218525 GO_REF:0000107 MGI:3046395 NCBI chr15:20,776,060...20,791,013
Ensembl chr15:20,776,054...20,822,740
JBrowse link
G Fkbp8 FKBP prolyl isomerase 8 ISO MGI:107689|MGI:3042750|MGI:3775614|MGI:95728 (MGI:3774974|PMID:18003640), (MGI:3806189|PMID:18590716) RGD PMID:18003640 PMID:18590716 MGI:3774974 MGI:3806189 NCBI chr16:20,645,956...20,652,890
Ensembl chr16:20,645,957...20,652,889
JBrowse link
G Foxa1 forkhead box A1 IEA
ISO
GO_REF:0000107
MGI:1347476 (MGI:5486225|PMID:23383217)
Ensembl
RGD
PMID:23383217 GO_REF:0000107 MGI:5486225 NCBI chr 6:78,516,579...78,549,669
Ensembl chr 6:78,545,804...78,549,669
JBrowse link
G Foxa2 forkhead box A2 ISO MGI:1347472|MGI:95841 (MGI:3806189|PMID:18590716), (MGI:5486225|PMID:23383217), (MGI:894511|PMID:9226455) RGD PMID:9226455 PMID:18590716 PMID:23383217 MGI:3806189 MGI:5486225 MGI:894511 NCBI chr 3:142,383,084...142,387,493
Ensembl chr 3:142,383,278...142,387,481
JBrowse link
G Gas1 growth arrest-specific 1 ISO MGI:3711070|MGI:98297 (MGI:3710451|PMID:17504941), (MGI:3710452|PMID:17504940) RGD PMID:17504940 PMID:17504941 MGI:3710451 MGI:3710452 NCBI chr17:4,846,116...4,849,350
Ensembl chr17:4,846,789...4,847,940
JBrowse link
G Gli2 GLI family zinc finger 2 ISO MGI:1857509 (MGI:3806189|PMID:18590716), (MGI:3841503|PMID:19286674), (MGI:894564|PMID:9247260) RGD PMID:9247260 PMID:18590716 PMID:19286674 MGI:3806189 MGI:3841503 MGI:894564 NCBI chr13:34,829,021...35,049,172
Ensembl chr13:34,829,139...35,048,444
JBrowse link
G Gsc goosecoid homeobox ISO MGI:1347476 (MGI:894511|PMID:9226455) RGD PMID:9226455 MGI:894511 NCBI chr 6:128,147,181...128,149,220
Ensembl chr 6:128,147,181...128,149,220
JBrowse link
G Kif3a kinesin family member 3a ISO MGI:1341070|MGI:1861960|MGI:95728 (MGI:3806189|PMID:18590716), (MGI:3841503|PMID:19286674), (MGI:4888042|PMID:21209331) RGD PMID:18590716 PMID:19286674 PMID:21209331 MGI:3806189 MGI:3841503 MGI:4888042 NCBI chr10:38,918,705...38,953,958
Ensembl chr10:38,918,748...38,952,785
JBrowse link
G Mnx1 motor neuron and pancreas homeobox 1 ISO (MGI:3806189|PMID:18590716) RGD PMID:18590716 MGI:3806189 NCBI chr 4:2,376,350...2,381,308
Ensembl chr 4:2,376,958...2,381,271
JBrowse link
G Pax7 paired box 7 ISO (MGI:3806189|PMID:18590716) RGD PMID:18590716 MGI:3806189 NCBI chr 5:158,211,001...158,313,510
Ensembl chr 5:158,214,616...158,313,426
JBrowse link
G Psen1 presenilin 1 ISO MGI:109284 (MGI:1347695|PMID:10557208) RGD PMID:10557208 MGI:1347695 NCBI chr 6:107,169,514...107,221,000
Ensembl chr 6:107,169,528...107,216,798
JBrowse link
G Psen2 presenilin 2 ISO MGI:1202717 (MGI:1347695|PMID:10557208) RGD PMID:10557208 MGI:1347695 NCBI chr13:98,513,600...98,539,347
Ensembl chr13:98,513,570...98,530,724
JBrowse link
G Ptch1 patched 1 ISO MGI:1857447 (MGI:1095757|PMID:9262482) RGD PMID:9262482 MGI:1095757 NCBI chr17:1,032,242...1,085,885
Ensembl chr17:1,029,048...1,093,873
JBrowse link
G Rab23 RAB23, member RAS oncogene family ISO (MGI:69552|PMID:7720556) RGD PMID:7720556 MGI:69552 NCBI chr 9:38,469,784...38,496,185
Ensembl chr 9:38,470,298...38,495,176
JBrowse link
G Shh sonic hedgehog signaling molecule IEA
ISO
GO_REF:0000107
MGI:95655 (MGI:3710017|PMID:17442700), (MGI:3710451|PMID:17504941), (MGI:3806189|PMID:18590716), (MGI:4888042|PMID:21209331)
Ensembl
RGD
PMID:17442700 PMID:17504941 PMID:18590716 PMID:21209331 GO_REF:0000107 MGI:3710017 MGI:3710451 MGI:3806189 MGI:4888042 NCBI chr 4:718,538...727,691
Ensembl chr 4:718,538...727,691
JBrowse link
G Smo smoothened, frizzled class receptor IEA
ISO
GO_REF:0000107
MGI:2176255 (MGI:3806189|PMID:18590716)
Ensembl
RGD
PMID:18590716 GO_REF:0000107 MGI:3806189 NCBI chr 4:57,019,941...57,041,779
Ensembl chr 4:57,019,941...57,042,770
JBrowse link
G Tctn1 tectonic family member 1 ISO MGI:3716885 (MGI:3610767|PMID:16357211) RGD PMID:16357211 MGI:3610767 NCBI chr12:39,790,948...39,828,215
Ensembl chr12:39,790,965...39,824,064
JBrowse link
G Tulp3 TUB like protein 3 ISO MGI:2388066 (MGI:3841503|PMID:19286674) RGD PMID:19286674 MGI:3841503 NCBI chr 4:161,636,084...161,677,807
Ensembl chr 4:161,637,892...161,658,519
JBrowse link
G Wnt3a Wnt family member 3A ISO MGI:1857489 (MGI:64780|PMID:8299937) RGD PMID:8299937 MGI:64780 NCBI chr10:45,598,898...45,643,151
Ensembl chr10:45,598,912...45,638,035
JBrowse link
ear morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Chd7 chromodomain helicase DNA binding protein 7 ISO MGI:1862038 (MGI:1861752|PMID:10932191) RGD PMID:10932191 MGI:1861752 NCBI chr 5:21,769,087...21,952,036
Ensembl chr 5:21,830,882...21,950,696
JBrowse link
G Gjb6 gap junction protein, beta 6 ISO MGI:2447863 (MGI:2447513|PMID:12490528) RGD PMID:12490528 MGI:2447513 NCBI chr15:37,400,888...37,411,656
Ensembl chr15:37,400,889...37,410,848
JBrowse link
G Nipbl NIPBL, cohesin loading factor ISO (PMID:8291537) RGD PMID:8291537 NCBI chr 2:57,508,830...57,676,197
Ensembl chr 2:57,509,428...57,600,820
JBrowse link
G Tbx1 T-box transcription factor 1 ISS
ISO
GO_REF:0000024
MGI:2179191 (MGI:3050165|PMID:15190012)
UniProt
RGD
PMID:15190012 GO_REF:0000024 MGI:3050165 NCBI chr11:86,552,022...86,561,647
Ensembl chr11:86,552,022...86,560,969
JBrowse link
G Wdr19 WD repeat domain 19 ISO MGI:5315747 (MGI:5314316|PMID:22228095) RGD PMID:22228095 MGI:5314316 NCBI chr14:44,705,012...44,767,120
Ensembl chr14:44,705,012...44,767,120
JBrowse link
ectoderm formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Foxa2 forkhead box A2 ISO MGI:99783 (MGI:1344734|PMID:10498685) RGD PMID:10498685 MGI:1344734 NCBI chr 3:142,383,084...142,387,493
Ensembl chr 3:142,383,278...142,387,481
JBrowse link
G Lhx1 LIM homeobox 1 ISS
ISO
GO_REF:0000024
MGI:1347476 (MGI:1344734|PMID:10498685)
UniProt
RGD
PMID:10498685 GO_REF:0000024 MGI:1344734 NCBI chr10:71,843,991...71,849,293
Ensembl chr10:71,843,991...71,849,293
JBrowse link
ectodermal cell fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Elf5 E74 like ETS transcription factor 5 ISO MGI:95456 (MGI:5616945|PMID:25446535) RGD PMID:25446535 MGI:5616945 NCBI chr 3:93,333,514...93,374,454
Ensembl chr 3:93,351,619...93,371,656
JBrowse link
G Ets2 ETS proto-oncogene 2, transcription factor ISO MGI:1335079 (MGI:5616945|PMID:25446535) RGD PMID:25446535 MGI:5616945 NCBI chr11:36,075,709...36,092,495
Ensembl chr11:36,075,709...36,092,495
JBrowse link
G Pou5f1 POU class 5 homeobox 1 ISO (MGI:1355046|PMID:10742100) RGD PMID:10742100 MGI:1355046 NCBI chr20:3,747,231...3,751,994
Ensembl chr20:3,747,221...3,751,994
JBrowse link
embryo development ending in birth or egg hatching term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ace angiotensin I converting enzyme IMP RGD PMID:1784836 RGD:12879818 NCBI chr10:94,170,766...94,213,831
Ensembl chr10:94,170,766...94,187,822
JBrowse link
G Akirin2 akirin 2 ISO (MGI:3771766|PMID:18066067) RGD PMID:18066067 MGI:3771766 NCBI chr 5:50,001,945...50,016,544
Ensembl chr 5:50,002,184...50,016,539
JBrowse link
G Camsap3 calmodulin regulated spectrin-associated protein family, member 3 ISO (MGI:6094483|PMID:28860385) RGD PMID:28860385 MGI:6094483 NCBI chr12:2,133,935...2,157,403
Ensembl chr12:2,134,022...2,157,403
JBrowse link
G Cdk5r1 cyclin-dependent kinase 5 regulatory subunit 1 IDA PMID:11276227 UniProt PMID:11276227 RGD:8554712 NCBI chr10:67,862,054...67,863,255
Ensembl chr10:67,862,054...67,863,255
JBrowse link
G Evx1 even-skipped homeobox 1 ISO MGI:2177782 (MGI:68131|PMID:7958869) RGD PMID:7958869 MGI:68131 NCBI chr 4:82,370,829...82,374,313
Ensembl chr 4:82,370,997...82,375,374
JBrowse link
G Fgf2 fibroblast growth factor 2 IMP RGD PMID:19476451 RGD:2315829 NCBI chr 2:124,081,072...124,134,133
Ensembl chr 2:124,081,072...124,134,681
JBrowse link
G Fgf8 fibroblast growth factor 8 ISO MGI:2686864 (MGI:2684487|PMID:14623825) RGD PMID:14623825 MGI:2684487 NCBI chr 1:265,492,949...265,498,965
Ensembl chr 1:265,493,124...265,498,831
JBrowse link
G Fxn frataxin IEA
ISO
GO_REF:0000107
MGI:2177162 (MGI:1858550|PMID:10767347)
Ensembl
RGD
PMID:10767347 GO_REF:0000107 MGI:1858550 NCBI chr 1:242,123,975...242,152,834
Ensembl chr 1:242,123,975...242,152,834
JBrowse link
G Hus1 HUS1 checkpoint clamp component ISO (MGI:3582004|PMID:15919177) RGD PMID:15919177 MGI:3582004 NCBI chr14:89,194,086...89,208,825
Ensembl chr14:89,194,092...89,208,825
JBrowse link
G Osr2 odd-skipped related transciption factor 2 ISS
ISO
GO_REF:0000024
(PMID:11520675)
UniProt
RGD
PMID:11520675 GO_REF:0000024 NCBI chr 7:74,047,820...74,055,096
Ensembl chr 7:74,047,814...74,055,256
JBrowse link
G Rictor RPTOR independent companion of MTOR, complex 2 ISO (MGI:3702793|PMID:16962829) RGD PMID:16962829 MGI:3702793 NCBI chr 2:56,013,898...56,105,818
Ensembl chr 2:56,052,643...56,101,803
JBrowse link
G Scel sciellin ISO (MGI:1928154|PMID:11112355) RGD PMID:11112355 MGI:1928154 NCBI chr15:87,689,190...87,820,731
Ensembl chr15:87,704,340...87,820,779
JBrowse link
G Sebox SEBOX homeobox IEA
ISO
GO_REF:0000107
(MGI:3836092|PMID:18753614)
Ensembl
RGD
PMID:18753614 GO_REF:0000107 MGI:3836092 NCBI chr10:65,771,370...65,774,748
Ensembl chr10:65,772,443...65,773,314
JBrowse link
G Stox2 storkhead box 2 ISS
ISO
GO_REF:0000024
(PMID:20643876)
UniProt
RGD
PMID:20643876 GO_REF:0000024 NCBI chr16:47,994,555...48,233,588
Ensembl chr16:48,120,864...48,228,891
JBrowse link
G Tp53 tumor protein p53 ISO MGI:2138319 (MGI:3624572|PMID:16702401) RGD PMID:16702401 MGI:3624572 NCBI chr10:56,186,299...56,198,449
Ensembl chr10:56,187,020...56,198,449
JBrowse link
G Tp53bp2 tumor protein p53 binding protein, 2 ISO MGI:98834 (MGI:3624572|PMID:16702401) RGD PMID:16702401 MGI:3624572 NCBI chr13:100,817,206...100,873,837
Ensembl chr13:100,817,359...100,873,890
JBrowse link
G Ubr3 ubiquitin protein ligase E3 component n-recognin 3 ISO (MGI:3718176|PMID:17462990) RGD PMID:17462990 MGI:3718176 NCBI chr 3:56,125,927...56,283,908
Ensembl chr 3:56,125,924...56,281,055
JBrowse link
embryonic axis specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cited1 Cbp/p300-interacting transactivator with Glu/Asp-rich carboxy-terminal domain 1 IDA PMID:15843474 UniProt PMID:15843474 RGD:8554075 NCBI chr  X:72,128,996...72,133,692
Ensembl chr  X:72,128,994...72,133,692
JBrowse link
G Cobl cordon-bleu WH2 repeat protein ISO
IEA
(PMID:7586755)
GO_REF:0000107
RGD
Ensembl
PMID:7586755 GO_REF:0000107 NCBI chr14:92,341,949...92,497,169
Ensembl chr14:92,342,957...92,577,936
JBrowse link
G Ctnnb1 catenin beta 1 IEA
ISO
GO_REF:0000107
(MGI:894149|PMID:9230313)
Ensembl
RGD
PMID:9230313 GO_REF:0000107 MGI:894149 NCBI chr 8:129,601,511...129,628,378
Ensembl chr 8:129,617,812...129,627,372
JBrowse link
G Frat1 FRAT regulator of WNT signaling pathway 1 ISO (MGI:1349209|PMID:10534617) RGD PMID:10534617 MGI:1349209 NCBI chr 1:261,071,965...261,075,244 JBrowse link
G Fzd5 frizzled class receptor 5 ISO (PMID:12121999) RGD PMID:12121999 NCBI chr 9:71,443,784...71,445,541
Ensembl chr 9:71,443,588...71,445,739
JBrowse link
G Peg12 paternally expressed 12 ISO (MGI:1349209|PMID:10534617) RGD PMID:10534617 MGI:1349209 NCBI chr 1:123,097,861...123,100,464
Ensembl chr 1:123,097,861...123,100,464
JBrowse link
G Stil STIL, centriolar assembly protein ISO MGI:2152962 (MGI:1339521|PMID:10385121) RGD PMID:10385121 MGI:1339521 NCBI chr 5:133,819,302...133,851,362
Ensembl chr 5:133,819,726...133,851,416
JBrowse link
G Wnt1 Wnt family member 1 ISO (MGI:4822553|PMID:2534596) RGD PMID:2534596 MGI:4822553 NCBI chr 7:140,464,999...140,469,046
Ensembl chr 7:140,464,999...140,469,046
JBrowse link
G Wnt7a Wnt family member 7A ISO (PMID:16826533) RGD PMID:16826533 NCBI chr 4:122,994,425...123,040,609
Ensembl chr 4:122,994,425...123,040,609
JBrowse link
embryonic body morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdon cell adhesion associated, oncogene regulated IEA
ISO
GO_REF:0000107
MGI:2653120|MGI:98297 (MGI:3624617|PMID:16647303), (MGI:3624618|PMID:16647304)
Ensembl
RGD
PMID:16647303 PMID:16647304 GO_REF:0000107 MGI:3624617 MGI:3624618 NCBI chr 8:36,625,757...36,712,091
Ensembl chr 8:36,625,733...36,710,949
JBrowse link
G Fuz fuzzy planar cell polarity protein ISS
ISO
GO_REF:0000024
(MGI:4438317|PMID:19767740), (MGI:5296432|PMID:21935430), (MGI:5498583|PMID:23806618)
UniProt
RGD
PMID:19767740 PMID:21935430 PMID:23806618 GO_REF:0000024 MGI:4438317 MGI:5296432 MGI:5498583 NCBI chr 1:100,891,832...100,896,811
Ensembl chr 1:100,891,866...100,896,807
JBrowse link
G Gatad2a GATA zinc finger domain containing 2A ISO (MGI:3762244|PMID:17565372) RGD PMID:17565372 MGI:3762244 NCBI chr16:21,177,793...21,267,768
Ensembl chr16:21,178,138...21,268,504
JBrowse link
G Grem2 gremlin 2, DAN family BMP antagonist ISO (MGI:5543884|PMID:23850456) RGD PMID:23850456 MGI:5543884 NCBI chr13:92,894,431...92,988,137
Ensembl chr13:92,894,431...92,988,137
JBrowse link
G Ift122 intraflagellar transport 122 ISO (MGI:3827087|PMID:19000668) RGD PMID:19000668 MGI:3827087 NCBI chr 4:147,756,574...147,826,983
Ensembl chr 4:147,756,553...147,826,997
JBrowse link
G Mab21l2 mab-21 like 2 ISO MGI:3511363 (MGI:3510098|PMID:15385160) RGD PMID:15385160 MGI:3510098 NCBI chr 2:185,849,749...185,852,833
Ensembl chr 2:185,850,232...185,852,759
JBrowse link
G Nckap1 NCK-associated protein 1 ISO MGI:3578145 (MGI:3701029|PMID:16831833) RGD PMID:16831833 MGI:3701029 NCBI chr 3:67,725,180...67,804,680
Ensembl chr 3:67,725,947...67,787,990
JBrowse link
G Ofd1 OFD1, centriole and centriolar satellite protein ISO (MGI:5498583|PMID:23806618) RGD PMID:23806618 MGI:5498583 NCBI chr  X:29,562,165...29,602,934
Ensembl chr  X:29,562,165...29,602,925
JBrowse link
G Tfap2a transcription factor AP-2 alpha ISO MGI:2183192 (MGI:3037149|PMID:15013802) RGD PMID:15013802 MGI:3037149 NCBI chr17:24,653,342...24,670,457
Ensembl chr17:24,654,902...24,670,457
JBrowse link
G Zfp281 zinc finger protein 281 ISO (MGI:5448369|PMID:21915945) RGD PMID:21915945 MGI:5448369 NCBI chr13:53,531,080...53,534,399
Ensembl chr13:53,506,925...53,534,353
JBrowse link
embryonic brain development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ahi1 Abelson helper integration site 1 IEP RGD PMID:19819228 RGD:11537397 NCBI chr 1:16,478,127...16,601,769
Ensembl chr 1:16,478,127...16,601,769
JBrowse link
G Cc2d2a coiled-coil and C2 domain containing 2A ISO MGI:5708063 (MGI:5696765|PMID:24947469) RGD PMID:24947469 MGI:5696765 NCBI chr14:71,895,128...71,979,452
Ensembl chr14:71,895,246...71,973,419
JBrowse link
G Cdk20 cyclin-dependent kinase 20 ISO MGI:6113512 (MGI:5912686|PMID:28817564) RGD PMID:28817564 MGI:5912686 NCBI chr17:1,935,900...1,942,867
Ensembl chr17:1,936,163...1,942,865
JBrowse link
G Ctnnb1 catenin beta 1 IEA
ISO
GO_REF:0000107
(MGI:1931800|PMID:11262227)
Ensembl
RGD
PMID:11262227 GO_REF:0000107 MGI:1931800 NCBI chr 8:129,601,511...129,628,378
Ensembl chr 8:129,617,812...129,627,372
JBrowse link
G En1 engrailed homeobox 1 ISO (MGI:75252|PMID:7624797) RGD PMID:7624797 MGI:75252 NCBI chr13:36,532,758...36,537,888
Ensembl chr13:36,532,758...36,537,093
JBrowse link
G En2 engrailed homeobox 2 ISO UniProtKB:P09065 (MGI:75252|PMID:7624797) RGD PMID:7624797 MGI:75252 NCBI chr 4:438,668...444,508
Ensembl chr 4:438,668...444,501
JBrowse link
G Ift140 intraflagellar transport 140 ISO MGI:4458412 (MGI:5505384|PMID:23469164) RGD PMID:23469164 MGI:5505384 NCBI chr10:14,373,668...14,461,509
Ensembl chr10:14,373,679...14,461,160
JBrowse link
G Med12 mediator complex subunit 12 ISO MGI:4839485 (MGI:4839544|PMID:20589884) RGD PMID:20589884 MGI:4839544 NCBI chr  X:71,174,653...71,197,812
Ensembl chr  X:71,174,699...71,197,812
JBrowse link
G Mfsd2a major facilitator superfamily domain containing 2A NOT ISO (MGI:6196220|PMID:30074985) RGD PMID:30074985 MGI:6196220 NCBI chr 5:140,642,865...140,657,759
Ensembl chr 5:140,642,885...140,657,745
JBrowse link
G Mir34b microRNA 34b ISO MGI:3619365|MGI:3619407|MGI:3639505|MGI:3718803 (MGI:5578416|PMID:24982181) RGD PMID:24982181 MGI:5578416 NCBI chr 8:55,492,542...55,492,625
Ensembl chr 8:55,492,542...55,492,625
JBrowse link
G Mir34c microRNA 34c ISO MGI:3619364|MGI:3619407|MGI:3639505|MGI:3718803 (MGI:5578416|PMID:24982181) RGD PMID:24982181 MGI:5578416 NCBI chr 8:55,492,024...55,492,100
Ensembl chr 8:55,492,024...55,492,100
JBrowse link
G Mir449a microRNA 449a ISO MGI:3619364|MGI:3619365|MGI:3639505|MGI:3718803 (MGI:5578416|PMID:24982181) RGD PMID:24982181 MGI:5578416 NCBI chr 2:44,897,601...44,897,691
Ensembl chr 2:44,897,601...44,897,691
JBrowse link
G Mir449c microRNA 449c ISO MGI:3619364|MGI:3619365|MGI:3619407|MGI:3718803 (MGI:5578416|PMID:24982181) RGD PMID:24982181 MGI:5578416 NCBI chr 2:44,896,066...44,896,164
Ensembl chr 2:44,896,066...44,896,164
JBrowse link
G Mks1 MKS transition zone complex subunit 1 IEA
ISO
GO_REF:0000107
MGI:4433029 (MGI:5487695|PMID:23454480)
Ensembl
RGD
PMID:23454480 GO_REF:0000107 MGI:5487695 NCBI chr10:75,149,814...75,160,481
Ensembl chr10:75,149,814...75,160,480
JBrowse link
G Pcnt pericentrin ISO MGI:4340776 (MGI:5696764|PMID:25220058) RGD PMID:25220058 MGI:5696764 NCBI chr20:12,943,523...13,038,615
Ensembl chr20:12,944,786...13,038,431
JBrowse link
G Phf10 PHD finger protein 10 IEP RGD PMID:24056535 RGD:9588230 NCBI chr 1:56,951,516...56,967,893
Ensembl chr 1:56,951,518...56,967,895
JBrowse link
G Rnf112 ring finger protein 112 ISS
ISO
IEA
GO_REF:0000024
(MGI:6154439|PMID:26951452)
GO_REF:0000107
UniProt
RGD
Ensembl
PMID:26951452 GO_REF:0000024 GO_REF:0000107 MGI:6154439 NCBI chr10:47,719,034...47,726,050
Ensembl chr10:47,719,014...47,725,172
JBrowse link
G Rpl10 ribosomal protein L10 ISO
ISS
(PMID:25316788)
GO_REF:0000024
RGD
UniProt
PMID:25316788 GO_REF:0000024 NCBI chr  X:156,438,251...156,440,461
Ensembl chr  X:156,438,251...156,440,461
JBrowse link
G Slc6a8 solute carrier family 6 member 8 IEP RGD PMID:15918910 RGD:1599815 NCBI chr  X:157,129,987...157,139,321
Ensembl chr  X:157,129,987...157,139,291
JBrowse link
G Tbc1d23 TBC1 domain family, member 23 ISO (MGI:6094290|PMID:28823707) RGD PMID:28823707 MGI:6094290 NCBI chr11:45,401,396...45,459,841
Ensembl chr11:45,401,403...45,459,821
JBrowse link
G Tra2b transformer 2 beta homolog ISO MGI:2176173|MGI:4450919 (MGI:5304203|PMID:22194695) RGD PMID:22194695 MGI:5304203 NCBI chr11:82,373,828...82,392,208
Ensembl chr11:82,373,870...82,392,083
JBrowse link
G Ttbk2 tau tubulin kinase 2 ISO MGI:5056320 (MGI:5049817|PMID:21548880) RGD PMID:21548880 MGI:5049817 NCBI chr 3:112,677,932...112,789,615
Ensembl chr 3:112,684,152...112,789,289
JBrowse link
G Tubb2b tubulin, beta 2B class IIb ISO MGI:5056364 (MGI:5050793|PMID:21515572) RGD PMID:21515572 MGI:5050793 NCBI chr17:31,441,640...31,444,687
Ensembl chr17:31,441,630...31,482,759
JBrowse link
G Wnt1 Wnt family member 1 ISO (MGI:3045659|PMID:15121182) RGD PMID:15121182 MGI:3045659 NCBI chr 7:140,464,999...140,469,046
Ensembl chr 7:140,464,999...140,469,046
JBrowse link
embryonic camera-type eye development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldh1a2 aldehyde dehydrogenase 1 family, member A2 ISO MGI:1861722 (MGI:3700411|PMID:17184764) RGD PMID:17184764 MGI:3700411 NCBI chr 8:77,640,234...77,719,488
Ensembl chr 8:77,640,222...77,719,489
JBrowse link
G Aldh1a3 aldehyde dehydrogenase 1 family, member A3 ISO MGI:107928 (MGI:3042765|PMID:14623956), (MGI:3700411|PMID:17184764) RGD PMID:14623956 PMID:17184764 MGI:3042765 MGI:3700411 NCBI chr 1:127,302,920...127,337,828
Ensembl chr 1:127,301,128...127,337,882
JBrowse link
G Cdk20 cyclin-dependent kinase 20 ISO MGI:6113512 (MGI:5912686|PMID:28817564) RGD PMID:28817564 MGI:5912686 NCBI chr17:1,935,900...1,942,867
Ensembl chr17:1,936,163...1,942,865
JBrowse link
G Fgf10 fibroblast growth factor 10 ISO MGI:1859647 (MGI:3588480|PMID:15958512) RGD PMID:15958512 MGI:3588480 NCBI chr 2:51,673,480...51,747,533
Ensembl chr 2:51,672,722...51,750,369
JBrowse link
G Fzd5 frizzled class receptor 5 ISO MGI:3574771|MGI:3583769 (MGI:3821812|PMID:18791178) RGD PMID:18791178 MGI:3821812 NCBI chr 9:71,443,784...71,445,541
Ensembl chr 9:71,443,588...71,445,739
JBrowse link
G Ift140 intraflagellar transport 140 ISO MGI:4458412 (MGI:5505384|PMID:23469164) RGD PMID:23469164 MGI:5505384 NCBI chr10:14,373,668...14,461,509
Ensembl chr10:14,373,679...14,461,160
JBrowse link
G Nes nestin ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr 2:187,343,109...187,352,972
Ensembl chr 2:187,344,056...187,352,969
JBrowse link
G Pitx2 paired-like homeodomain 2 ISO MGI:1857844|MGI:1857846|MGI:1857880 (MGI:1344731|PMID:10498698), (MGI:1347482|PMID:10572050) RGD PMID:10498698 PMID:10572050 MGI:1344731 MGI:1347482 NCBI chr 2:233,602,732...233,621,059
Ensembl chr 2:233,602,732...233,621,129
JBrowse link
G Ppp1r13l protein phosphatase 1, regulatory subunit 13 like ISO MGI:3575541 (MGI:3530389|PMID:15661756) RGD PMID:15661756 MGI:3530389 NCBI chr 1:80,271,288...80,290,946
Ensembl chr 1:80,279,706...80,290,408
JBrowse link
G Rara retinoic acid receptor, alpha ISO MGI:97858 (MGI:69060|PMID:7607067) RGD PMID:7607067 MGI:69060 NCBI chr10:86,838,819...86,884,224
Ensembl chr10:86,860,685...86,884,210
JBrowse link
G Rarg retinoic acid receptor, gamma ISO MGI:97856 (MGI:69060|PMID:7607067) RGD PMID:7607067 MGI:69060 NCBI chr 7:143,840,739...143,863,206
Ensembl chr 7:143,839,980...143,863,186
JBrowse link
G Rdh10 retinol dehydrogenase 10 ISO (MGI:3709664|PMID:17473173) RGD PMID:17473173 MGI:3709664 NCBI chr 5:2,605,265...2,631,905
Ensembl chr 5:2,603,505...2,632,030
JBrowse link
G Traf3ip1 TRAF3 interacting protein 1 ISO MGI:4129326 (MGI:5298450|PMID:21945076) RGD PMID:21945076 MGI:5298450 NCBI chr 9:98,621,499...98,658,223
Ensembl chr 9:98,621,506...98,656,901
JBrowse link
G Tulp3 TUB like protein 3 ISO MGI:2388066 (MGI:3841503|PMID:19286674) RGD PMID:19286674 MGI:3841503 NCBI chr 4:161,636,084...161,677,807
Ensembl chr 4:161,637,892...161,658,519
JBrowse link
G Wdr19 WD repeat domain 19 ISO MGI:5315747 (MGI:5314316|PMID:22228095) RGD PMID:22228095 MGI:5314316 NCBI chr14:44,705,012...44,767,120
Ensembl chr14:44,705,012...44,767,120
JBrowse link
embryonic camera-type eye formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Stra6 signaling receptor and transporter of retinol STRA6 ISO
IEA
(PMID:17273977)
GO_REF:0000107
RGD
Ensembl
PMID:17273977 GO_REF:0000107 NCBI chr 8:62,925,364...62,944,438
Ensembl chr 8:62,925,357...62,944,437
JBrowse link
G Twist1 twist family bHLH transcription factor 1 ISO (PMID:17070479) RGD PMID:17070479 NCBI chr 6:53,401,241...53,403,235
Ensembl chr 6:53,401,109...53,403,214
JBrowse link
embryonic camera-type eye morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp7 bone morphogenetic protein 7 ISO MGI:1857654 (MGI:1332362|PMID:10049573) RGD PMID:10049573 MGI:1332362 NCBI chr 3:170,879,972...170,955,820
Ensembl chr 3:170,879,973...170,955,399
JBrowse link
G Cited2 Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2 ISO MGI:97490 (MGI:3807101|PMID:18653562) RGD PMID:18653562 MGI:3807101 NCBI chr 1:12,823,363...12,825,806
Ensembl chr 1:12,823,363...12,825,786
JBrowse link
G Cryaa crystallin, alpha A ISO MGI:3777403 (MGI:3775669|PMID:18056999) RGD PMID:18056999 MGI:3775669 NCBI chr20:10,438,444...10,442,189
Ensembl chr20:10,438,444...10,442,187
JBrowse link
G Foxf2 forkhead box F2 ISO (MGI:5297296|PMID:22022403) RGD PMID:22022403 MGI:5297296 NCBI chr17:34,150,417...34,156,450 JBrowse link
G Fzd5 frizzled class receptor 5 IEA
ISO
GO_REF:0000107
(MGI:3826935|PMID:18832390)
Ensembl
RGD
PMID:18832390 GO_REF:0000107 MGI:3826935 NCBI chr 9:71,443,784...71,445,541
Ensembl chr 9:71,443,588...71,445,739
JBrowse link
G Hipk1 homeodomain interacting protein kinase 1 IEA
ISO
GO_REF:0000107
(MGI:4818711|PMID:20579985)
Ensembl
RGD
PMID:20579985 GO_REF:0000107 MGI:4818711 NCBI chr 2:206,224,015...206,274,910
Ensembl chr 2:206,224,015...206,274,079
JBrowse link
G Hipk2 homeodomain interacting protein kinase 2 ISO (MGI:4818711|PMID:20579985) RGD PMID:20579985 MGI:4818711 NCBI chr 4:66,438,390...66,625,183
Ensembl chr 4:66,445,266...66,624,912
JBrowse link
G Ift122 intraflagellar transport 122 ISO MGI:3578529 (MGI:6094959|PMID:28778798) RGD PMID:28778798 MGI:6094959 NCBI chr 4:147,756,574...147,826,983
Ensembl chr 4:147,756,553...147,826,997
JBrowse link
G Ift172 intraflagellar transport 172 ISO MGI:2682066 (MGI:6094959|PMID:28778798) RGD PMID:28778798 MGI:6094959 NCBI chr 6:26,390,686...26,485,459 JBrowse link
G Ihh Indian hedgehog signaling molecule ISO MGI:1934258 (MGI:3807419|PMID:18582859) RGD PMID:18582859 MGI:3807419 NCBI chr 9:82,208,223...82,214,440
Ensembl chr 9:82,208,223...82,214,440
JBrowse link
G Kdm2b lysine demethylase 2B ISO (MGI:4949568|PMID:21220025) RGD PMID:21220025 MGI:4949568 NCBI chr12:39,021,924...39,161,954
Ensembl chr12:39,078,119...39,161,956
JBrowse link
G Lrp6 LDL receptor related protein 6 ISO
IBA
MGI:2156191|MGI:4415718 (MGI:3823171|PMID:18985738), (MGI:4413396|PMID:19653321)
PMID:21873635
RGD PMID:18985738 PMID:19653321, PMID:21873635 MGI:3823171 MGI:4413396, RGD:13792537 NCBI chr 4:168,194,054...168,323,962
Ensembl chr 4:168,194,927...168,323,751
JBrowse link
G Pax6 paired box 6 IEA
ISO
GO_REF:0000107
MGI:1306784 (MGI:3807101|PMID:18653562)
Ensembl
RGD
PMID:18653562 GO_REF:0000107 MGI:3807101 NCBI chr 3:95,700,241...95,728,682
Ensembl chr 3:95,707,386...95,728,624
JBrowse link
G Sp1 Sp1 transcription factor ISO MGI:1277166 (MGI:3717030|PMID:17584888) RGD PMID:17584888 MGI:3717030 NCBI chr 7:144,014,173...144,044,635
Ensembl chr 7:144,014,173...144,044,629
JBrowse link
G Sp3 Sp3 transcription factor ISO MGI:98372 (MGI:3717030|PMID:17584888) RGD PMID:17584888 MGI:3717030 NCBI chr 3:59,644,579...59,689,011
Ensembl chr 3:59,646,015...59,688,692
JBrowse link
G Tbx2 T-box transcription factor 2 ISO (MGI:3487212|PMID:15459098) RGD PMID:15459098 MGI:3487212 NCBI chr10:73,278,932...73,290,764
Ensembl chr10:73,279,119...73,289,921
JBrowse link
G Tfap2a transcription factor AP-2 alpha ISO MGI:2176682 (MGI:1313057|PMID:9811866) RGD PMID:9811866 MGI:1313057 NCBI chr17:24,653,342...24,670,457
Ensembl chr17:24,654,902...24,670,457
JBrowse link
G Th tyrosine hydroxylase ISO (MGI:3617102|PMID:16445854) RGD PMID:16445854 MGI:3617102 NCBI chr 1:216,073,034...216,080,287
Ensembl chr 1:216,073,031...216,080,287
JBrowse link
G Zeb1 zinc finger E-box binding homeobox 1 IEA
ISO
GO_REF:0000107
MGI:1857515 (MGI:3790562|PMID:18436818)
Ensembl
RGD
PMID:18436818 GO_REF:0000107 MGI:3790562 NCBI chr17:54,656,627...54,714,920
Ensembl chr17:54,658,463...54,714,914
JBrowse link
embryonic cleavage term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aatf apoptosis antagonizing transcription factor ISO MGI:2176283 (MGI:1927250|PMID:11071758) RGD PMID:11071758 MGI:1927250 NCBI chr10:71,744,648...71,837,851
Ensembl chr10:71,744,659...71,837,851
JBrowse link
G Cul3 cullin 3 IEA
ISO
ISS
GO_REF:0000107
(MGI:5312166|PMID:22358839)
GO_REF:0000024
Ensembl
RGD
UniProt
PMID:22358839 GO_REF:0000024 GO_REF:0000107 MGI:5312166 NCBI chr 9:86,044,485...86,129,066
Ensembl chr 9:86,044,485...86,129,329
JBrowse link
G Dppa3 developmental pluripotency-associated 3 ISO MGI:3057184 (MGI:3056827|PMID:15018652) RGD PMID:15018652 MGI:3056827 NCBI chr 4:155,437,675...155,441,059
Ensembl chr 3:111,298,713...111,299,189
Ensembl chr 4:111,298,713...111,299,189
JBrowse link
G Ercc2 ERCC excision repair 2, TFIIH core complex helicase subunit ISO MGI:2183947 (MGI:1101629|PMID:9426063) RGD PMID:9426063 MGI:1101629 NCBI chr 1:80,293,574...80,307,334
Ensembl chr 1:80,293,566...80,307,344
JBrowse link
G Gdf9 growth differentiation factor 9 ISO (PMID:24313324) RGD PMID:24313324 NCBI chr10:38,782,519...38,793,238
Ensembl chr10:38,788,992...38,792,940
JBrowse link
G Kif20a kinesin family member 20A ISO (PMID:25036038) RGD PMID:25036038 NCBI chr18:27,424,328...27,432,814
Ensembl chr18:27,424,328...27,432,814
JBrowse link
G Pik3cb phosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit beta IEA
ISO
GO_REF:0000107
MGI:2180703 (MGI:2177130|PMID:11919689)
Ensembl
RGD
PMID:11919689 GO_REF:0000107 MGI:2177130 NCBI chr 8:107,275,849...107,381,088
Ensembl chr 8:107,275,725...107,380,933
JBrowse link
G Rhoa ras homolog family member A ISO (PMID:25485583) RGD PMID:25485583 NCBI chr 8:117,082,440...117,116,244
Ensembl chr 8:117,106,576...117,116,167
JBrowse link
G Top1 DNA topoisomerase I IEA
ISO
GO_REF:0000107
MGI:2678314 (MGI:83974|PMID:8943335)
Ensembl
RGD
PMID:8943335 GO_REF:0000107 MGI:83974 NCBI chr 3:156,635,688...156,717,686
Ensembl chr 3:156,642,464...156,717,686
JBrowse link
G Top2a DNA topoisomerase II alpha IEA
ISO
GO_REF:0000107
(MGI:2158879|PMID:11835580)
Ensembl
RGD
PMID:11835580 GO_REF:0000107 MGI:2158879 NCBI chr10:86,901,467...86,930,947
Ensembl chr10:86,901,007...86,932,154
JBrowse link
G Tpra1 transmembrane protein adipocyte associated 1 IEA
ISO
GO_REF:0000107
(MGI:5525240|PMID:18459117)
Ensembl
RGD
PMID:18459117 GO_REF:0000107 MGI:5525240 NCBI chr 4:120,843,374...120,854,534
Ensembl chr 4:120,843,453...120,854,529
JBrowse link
embryonic cranial skeleton morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Alx3 ALX homeobox 3 IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 2:210,376,510...210,386,928
Ensembl chr 2:210,381,829...210,386,928
JBrowse link
G Bmp4 bone morphogenetic protein 4 IEA
ISO
GO_REF:0000107
MGI:1857137 (MGI:1095762|PMID:9268572)
Ensembl
RGD
PMID:9268572 GO_REF:0000107 MGI:1095762 NCBI chr15:20,776,060...20,791,013
Ensembl chr15:20,776,054...20,822,740
JBrowse link
G Dlx2 distal-less homeobox 2 IEA
ISO
GO_REF:0000107
MGI:1857828 (MGI:76977|PMID:7590232)
Ensembl
RGD
PMID:7590232 GO_REF:0000107 MGI:76977 NCBI chr 3:58,180,088...58,181,971
Ensembl chr 3:58,180,088...58,181,971
JBrowse link
G Eif4a3 eukaryotic translation initiation factor 4A3 ISO
ISS
(PMID:24360810)
GO_REF:0000024
RGD
UniProt
PMID:24360810 GO_REF:0000024 NCBI chr10:108,415,201...108,425,195
Ensembl chr10:108,415,202...108,425,206
JBrowse link
G Fgfr2 fibroblast growth factor receptor 2 ISO (PMID:7874170), (PMID:7987400) RGD PMID:7874170 PMID:7987400 NCBI chr 1:200,590,951...200,696,946
Ensembl chr 1:200,590,953...200,696,928
JBrowse link
G Foxc2 forkhead box C2 ISO MGI:1857865 (MGI:86990|PMID:9106663) RGD PMID:9106663 MGI:86990 NCBI chr19:53,044,379...53,047,081
Ensembl chr19:53,044,379...53,047,081
JBrowse link
G Gas1 growth arrest-specific 1 ISO MGI:2388397|MGI:98297 (MGI:3713422|PMID:17525797) RGD PMID:17525797 MGI:3713422 NCBI chr17:4,846,116...4,849,350
Ensembl chr17:4,846,789...4,847,940
JBrowse link
G Gnas GNAS complex locus ISO MGI:3043361 (MGI:3619837|PMID:15797856) RGD PMID:15797856 MGI:3619837 NCBI chr 3:172,374,957...172,434,988
Ensembl chr 3:172,374,957...172,428,483
Ensembl chr 3:172,374,957...172,428,483
JBrowse link
G Grhl2 grainyhead-like transcription factor 2 ISO MGI:4942413 (MGI:4943100|PMID:21377456) RGD PMID:21377456 MGI:4943100 NCBI chr 7:76,058,623...76,197,360
Ensembl chr 7:76,059,386...76,197,856
JBrowse link
G Ift140 intraflagellar transport 140 ISO MGI:4458412 (MGI:5505384|PMID:23469164) RGD PMID:23469164 MGI:5505384 NCBI chr10:14,373,668...14,461,509
Ensembl chr10:14,373,679...14,461,160
JBrowse link
G Irx5 iroquois homeobox 5 ISO (PMID:22581230) RGD PMID:22581230 NCBI chr19:16,415,813...16,421,088
Ensembl chr19:16,415,636...16,421,191
JBrowse link
G Mmp14 matrix metallopeptidase 14 ISO MGI:1276107 (MGI:3771253|PMID:18022611) RGD PMID:18022611 MGI:3771253 NCBI chr15:33,074,441...33,083,666
Ensembl chr15:33,074,441...33,083,655
JBrowse link
G Mmp16 matrix metallopeptidase 16 IEA
ISO
GO_REF:0000107
MGI:2445723 (MGI:3771253|PMID:18022611)
Ensembl
RGD
PMID:18022611 GO_REF:0000107 MGI:3771253 NCBI chr 5:31,568,344...31,818,368
Ensembl chr 5:31,568,419...31,810,484
JBrowse link
G Nipbl NIPBL, cohesin loading factor ISO MGI:4332250 (MGI:4367301|PMID:19763162) RGD PMID:19763162 MGI:4367301 NCBI chr 2:57,508,830...57,676,197
Ensembl chr 2:57,509,428...57,600,820
JBrowse link
G Nodal nodal growth differentiation factor ISO MGI:2158732 (MGI:2155575|PMID:11311163) RGD PMID:11311163 MGI:2155575 NCBI chr20:31,035,729...31,044,096
Ensembl chr20:31,035,729...31,044,096
JBrowse link
G Pax5 paired box 5 ISO MGI:2386577 (MGI:5476374|PMID:23349049) RGD PMID:23349049 MGI:5476374 NCBI chr 5:60,007,587...60,191,973
Ensembl chr 5:60,007,587...60,191,941
JBrowse link
G Pdgfra platelet derived growth factor receptor alpha IEA
IBA
ISO
ISS
GO_REF:0000107
PMID:21873635
(MGI:894516|PMID:9226440)
GO_REF:0000024
Ensembl
RGD
UniProt
PMID:9226440, PMID:21873635 GO_REF:0000024 GO_REF:0000107 MGI:894516, RGD:13792537 NCBI chr14:35,527,926...35,581,130
Ensembl chr14:35,527,927...35,581,031
JBrowse link
G Prrx1 paired related homeobox 1 ISO MGI:1857640|MGI:98218 (MGI:1306737|PMID:9729491), (MGI:73363|PMID:7758948) RGD PMID:7758948 PMID:9729491 MGI:1306737 MGI:73363 NCBI chr13:81,147,038...81,215,559
Ensembl chr13:81,147,348...81,214,546
JBrowse link
G Prrx2 paired related homeobox 2 ISO MGI:97712 (MGI:1306737|PMID:9729491) RGD PMID:9729491 MGI:1306737 NCBI chr 3:9,681,871...9,718,051
Ensembl chr 3:9,681,871...9,718,051
JBrowse link
G Runx2 RUNX family transcription factor 2 IEA
ISO
GO_REF:0000107
MGI:104685|MGI:98872 (MGI:3042355|PMID:15030764)
Ensembl
RGD
PMID:15030764 GO_REF:0000107 MGI:3042355 NCBI chr 9:18,564,743...18,773,092
Ensembl chr 9:18,564,927...18,773,092
JBrowse link
G Setd2 SET domain containing 2, histone lysine methyltransferase ISO MGI:4437211 (MGI:4431136|PMID:20133625) RGD PMID:20133625 MGI:4431136 NCBI chr 8:118,802,478...118,888,224
Ensembl chr 8:118,803,075...118,888,224
JBrowse link
G Six1 SIX homeobox 1 ISO MGI:106034 (MGI:4822095|PMID:20515681) RGD PMID:20515681 MGI:4822095 NCBI chr 6:95,929,060...95,934,296
Ensembl chr 6:95,929,060...95,934,296
JBrowse link
G Six2 SIX homeobox 2 ISO MGI:3691857 (MGI:4822095|PMID:20515681) RGD PMID:20515681 MGI:4822095 NCBI chr 6:8,952,572...8,955,893
Ensembl chr 6:8,952,572...8,956,276
JBrowse link
G Six4 SIX homeobox 4 ISO MGI:102780 (MGI:4822095|PMID:20515681) RGD PMID:20515681 MGI:4822095 NCBI chr 6:95,984,868...95,999,709
Ensembl chr 6:95,984,868...95,998,529
JBrowse link
G Slc39a1 solute carrier family 39 member 1 ISO MGI:2147269|MGI:3625131 (MGI:3624433|PMID:16652366) RGD PMID:16652366 MGI:3624433 NCBI chr 2:189,609,766...189,615,367
Ensembl chr 2:189,609,800...189,615,366
JBrowse link
G Slc39a3 solute carrier family 39 member 3 ISO MGI:1353474 (MGI:3624433|PMID:16652366) RGD PMID:16652366 MGI:3624433 NCBI chr 7:11,545,073...11,551,074
Ensembl chr 7:11,545,024...11,553,370
JBrowse link
G Smad2 SMAD family member 2 ISO MGI:1201674 (MGI:3618021|PMID:15183723) RGD PMID:15183723 MGI:3618021 NCBI chr18:72,550,107...72,612,078
Ensembl chr18:72,550,219...72,612,078
JBrowse link
G Smad3 SMAD family member 3 ISO MGI:108051 (MGI:3618021|PMID:15183723) RGD PMID:15183723 MGI:3618021 NCBI chr 8:68,569,530...68,678,349
Ensembl chr 8:68,569,530...68,678,349
JBrowse link
G Tbx1 T-box transcription factor 1 ISS
ISO
GO_REF:0000024
MGI:2179191 (MGI:3050165|PMID:15190012)
UniProt
RGD
PMID:15190012 GO_REF:0000024 MGI:3050165 NCBI chr11:86,552,022...86,561,647
Ensembl chr11:86,552,022...86,560,969
JBrowse link
G Tbx15 T-box transcription factor 15 ISO MGI:1856015 (MGI:3604843|PMID:15728667) RGD PMID:15728667 MGI:3604843 NCBI chr 2:201,289,042...201,390,752
Ensembl chr 2:201,289,357...201,390,745
JBrowse link
G Tfap2a transcription factor AP-2 alpha ISS
ISO
GO_REF:0000024
MGI:1888387 (MGI:80519|PMID:8622766), (MGI:80520|PMID:8622765)
UniProt
RGD
PMID:8622765 PMID:8622766 GO_REF:0000024 MGI:80519 MGI:80520 NCBI chr17:24,653,342...24,670,457
Ensembl chr17:24,654,902...24,670,457
JBrowse link
G Tgfbr1 transforming growth factor, beta receptor 1 ISO MGI:2680164 (MGI:3701721|PMID:16806156) RGD PMID:16806156 MGI:3701721 NCBI chr 5:63,056,071...63,119,635
Ensembl chr 5:63,050,758...63,119,635
JBrowse link
G Tgfbr2 transforming growth factor, beta receptor 2 ISO (MGI:2678274|PMID:12975342) RGD PMID:12975342 MGI:2678274 NCBI chr 8:124,310,288...124,399,345
Ensembl chr 8:124,312,754...124,399,494
JBrowse link
G Twist1 twist family bHLH transcription factor 1 ISO (PMID:8988166), (PMID:8988167)
MGI:99829 (MGI:1100098|PMID:8988167), (MGI:3042355|PMID:15030764)
RGD PMID:8988166 PMID:8988167 PMID:15030764 MGI:1100098 MGI:3042355 NCBI chr 6:53,401,241...53,403,235
Ensembl chr 6:53,401,109...53,403,214
JBrowse link
G Twist2 twist family bHLH transcription factor 2 ISO MGI:99829 (MGI:3042355|PMID:15030764) RGD PMID:15030764 MGI:3042355 NCBI chr 9:98,924,134...98,968,510
Ensembl chr 9:98,924,134...98,968,510
JBrowse link
G Wdr19 WD repeat domain 19 ISO MGI:5315747 (MGI:5314316|PMID:22228095) RGD PMID:22228095 MGI:5314316 NCBI chr14:44,705,012...44,767,120
Ensembl chr14:44,705,012...44,767,120
JBrowse link
G Wnt9b Wnt family member 9B ISO MGI:1856821|MGI:3526437 (MGI:3588895|PMID:16054034), (MGI:3696935|PMID:16998816) RGD PMID:16054034 PMID:16998816 MGI:3588895 MGI:3696935 NCBI chr10:91,785,892...91,808,061
Ensembl chr10:91,785,893...91,807,937
JBrowse link
embryonic digestive tract development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ada adenosine deaminase ISO MGI:2155977 (MGI:74163|PMID:7670465) RGD PMID:7670465 MGI:74163 NCBI chr 3:160,115,840...160,139,947
Ensembl chr 3:160,115,842...160,139,947
JBrowse link
G Aldh1a2 aldehyde dehydrogenase 1 family, member A2 ISO MGI:1857891 (MGI:3663954|PMID:16806149) RGD PMID:16806149 MGI:3663954 NCBI chr 8:77,640,234...77,719,488
Ensembl chr 8:77,640,222...77,719,489
JBrowse link
G Fgf10 fibroblast growth factor 10 ISO MGI:1927833 (MGI:3611702|PMID:16308329) RGD PMID:16308329 MGI:3611702 NCBI chr 2:51,673,480...51,747,533
Ensembl chr 2:51,672,722...51,750,369
JBrowse link
G Fgf9 fibroblast growth factor 9 ISO MGI:2135961 (MGI:3611702|PMID:16308329) RGD PMID:16308329 MGI:3611702 NCBI chr15:38,341,657...38,386,945
Ensembl chr15:38,341,089...38,387,316
JBrowse link
G Foxf1 forkhead box F1 ISO MGI:1347479 (MGI:3617131|PMID:16439479) RGD PMID:16439479 MGI:3617131 NCBI chr19:53,012,306...53,016,100
Ensembl chr19:53,012,332...53,016,086
JBrowse link
G Foxf2 forkhead box F2 ISO MGI:1347470 (MGI:3617131|PMID:16439479) RGD PMID:16439479 MGI:3617131 NCBI chr17:34,150,417...34,156,450 JBrowse link
G Gli2 GLI family zinc finger 2 ISO MGI:1857509 (MGI:1353327|PMID:10693670) RGD PMID:10693670 MGI:1353327 NCBI chr13:34,829,021...35,049,172
Ensembl chr13:34,829,139...35,048,444
JBrowse link
G Gli3 GLI family zinc finger 3 ISO MGI:1856276 (MGI:1353327|PMID:10693670) RGD PMID:10693670 MGI:1353327 NCBI chr17:52,294,942...52,569,036
Ensembl chr17:52,294,942...52,569,036
JBrowse link
G Myb MYB proto-oncogene, transcription factor ISO MGI:2662859 (MGI:1346939|PMID:10523863) RGD PMID:10523863 MGI:1346939 NCBI chr 1:16,658,178...16,690,135
Ensembl chr 1:16,659,442...16,687,817
JBrowse link
G Pcsk5 proprotein convertase subtilisin/kexin type 5 ISO (PMID:18519639)
(MGI:3795695|PMID:18519639)
RGD PMID:18519639 MGI:3795695 NCBI chr 1:236,031,988...236,313,858
Ensembl chr 1:236,031,988...236,313,858
JBrowse link
G Pkdcc protein kinase domain containing, cytoplasmic ISO (MGI:3813934|PMID:19097194) RGD PMID:19097194 MGI:3813934 NCBI chr 6:6,427,657...6,436,974
Ensembl chr 6:6,427,657...6,436,974
JBrowse link
G Rarb retinoic acid receptor, beta ISO (PMID:19443732) RGD PMID:19443732 NCBI chr15:9,915,223...10,262,599
Ensembl chr15:10,120,206...10,262,599
JBrowse link
G Rarres2 retinoic acid receptor responder 2 ISO (PMID:19443732) RGD PMID:19443732 NCBI chr 4:78,205,809...78,208,956
Ensembl chr 4:78,205,812...78,208,767
JBrowse link
G Sall1 spalt-like transcription factor 1 ISO (PMID:18280297) RGD PMID:18280297 NCBI chr19:23,387,737...23,405,025
Ensembl chr19:23,389,375...23,405,039
JBrowse link
G Sct secretin IEP RGD PMID:1711228 RGD:729899 NCBI chr 1:214,264,865...214,277,437
Ensembl chr 1:214,264,754...214,265,668
JBrowse link
G Stra6 signaling receptor and transporter of retinol STRA6 ISO
IEA
(PMID:17273977)
GO_REF:0000107
RGD
Ensembl
PMID:17273977 GO_REF:0000107 NCBI chr 8:62,925,364...62,944,438
Ensembl chr 8:62,925,357...62,944,437
JBrowse link
G Tgfb2 transforming growth factor, beta 2 ISO
ISS
(PMID:20875417)
GO_REF:0000024
RGD
AgBase
PMID:20875417 GO_REF:0000024 NCBI chr13:105,039,639...105,142,010
Ensembl chr13:105,039,853...105,141,030
JBrowse link
G Tnf tumor necrosis factor ISO (PMID:20875417) RGD PMID:20875417 NCBI chr20:5,189,382...5,192,000
Ensembl chr20:5,189,390...5,192,000
JBrowse link
embryonic digestive tract morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fgf10 fibroblast growth factor 10 ISO MGI:1859647|MGI:1927833 (MGI:3040447|PMID:15017552), (MGI:3722952|PMID:16618415) RGD PMID:15017552 PMID:16618415 MGI:3040447 MGI:3722952 NCBI chr 2:51,673,480...51,747,533
Ensembl chr 2:51,672,722...51,750,369
JBrowse link
G Fgfr2 fibroblast growth factor receptor 2 ISO MGI:2153811|MGI:2183527 (MGI:3722952|PMID:16618415), (MGI:5285062|PMID:21550054), (MGI:5317412|PMID:21492869) RGD PMID:16618415 PMID:21492869 PMID:21550054 MGI:3722952 MGI:5285062 MGI:5317412 NCBI chr 1:200,590,951...200,696,946
Ensembl chr 1:200,590,953...200,696,928
JBrowse link
G Foxf1 forkhead box F1 ISO (PMID:19500772) RGD PMID:19500772 NCBI chr19:53,012,306...53,016,100
Ensembl chr19:53,012,332...53,016,086
JBrowse link
G Gata4 GATA binding protein 4 ISO MGI:2386764 (MGI:3590399|PMID:16127717) RGD PMID:16127717 MGI:3590399 NCBI chr15:46,386,703...46,458,679
Ensembl chr15:46,386,712...46,432,965
JBrowse link
G Gli3 GLI family zinc finger 3 ISO MGI:1856276 (MGI:3608164|PMID:16247775) RGD PMID:16247775 MGI:3608164 NCBI chr17:52,294,942...52,569,036
Ensembl chr17:52,294,942...52,569,036
JBrowse link
G Hlx H2.0-like homeobox ISO MGI:2182089 (MGI:79044|PMID:8557196) RGD PMID:8557196 MGI:79044 NCBI chr13:102,637,967...102,643,376
Ensembl chr13:102,637,769...102,643,223
JBrowse link
G Hnf1b HNF1 homeobox B ISO MGI:1857856 (MGI:3807614|PMID:18635606) RGD PMID:18635606 MGI:3807614 NCBI chr10:71,159,863...71,218,902
Ensembl chr10:71,159,869...71,218,902
JBrowse link
G Id2 inhibitor of DNA binding 2 ISS
ISO
GO_REF:0000024
(MGI:4399020|PMID:16888283)
UniProt
RGD
PMID:16888283 GO_REF:0000024 MGI:4399020 NCBI chr 6:44,360,077...44,361,908
Ensembl chr 6:44,348,501...44,363,915
JBrowse link
G Ihh Indian hedgehog signaling molecule ISO MGI:1934258 (MGI:1858523|PMID:10821773) RGD PMID:10821773 MGI:1858523 NCBI chr 9:82,208,223...82,214,440
Ensembl chr 9:82,208,223...82,214,440
JBrowse link
G Nipbl NIPBL, cohesin loading factor ISO (PMID:19242925), (PMID:8291537) RGD PMID:8291537 PMID:19242925 NCBI chr 2:57,508,830...57,676,197
Ensembl chr 2:57,509,428...57,600,820
JBrowse link
G Ovol2 ovo-like zinc finger 2 ISO MGI:3522498 (MGI:3618450|PMID:16423343) RGD PMID:16423343 MGI:3618450 NCBI chr 3:138,433,990...138,464,511
Ensembl chr 3:138,433,990...138,462,063
JBrowse link
G Pdgfra platelet derived growth factor receptor alpha IEA
ISO
ISS
GO_REF:0000107
(MGI:1860627|PMID:10903171)
GO_REF:0000024
Ensembl
RGD
UniProt
PMID:10903171 GO_REF:0000024 GO_REF:0000107 MGI:1860627 NCBI chr14:35,527,926...35,581,130
Ensembl chr14:35,527,927...35,581,031
JBrowse link
G Pitx2 paired-like homeodomain 2 ISO MGI:3767234 (MGI:5285062|PMID:21550054) RGD PMID:21550054 MGI:5285062 NCBI chr 2:233,602,732...233,621,059
Ensembl chr 2:233,602,732...233,621,129
JBrowse link
G Shh sonic hedgehog signaling molecule IEA
ISO
GO_REF:0000107
MGI:1934261 (MGI:1858523|PMID:10821773)
Ensembl
RGD
PMID:10821773 GO_REF:0000107 MGI:1858523 NCBI chr 4:718,538...727,691
Ensembl chr 4:718,538...727,691
JBrowse link
G Shox2 short stature homeobox 2 ISO MGI:3605739 (MGI:3604918|PMID:16141225) RGD PMID:16141225 MGI:3604918 NCBI chr 2:164,118,175...164,126,783
Ensembl chr 2:164,118,191...164,126,783
JBrowse link
G Six2 SIX homeobox 2 ISO (MGI:4365896|PMID:19660448) RGD PMID:19660448 MGI:4365896 NCBI chr 6:8,952,572...8,955,893
Ensembl chr 6:8,952,572...8,956,276
JBrowse link
G Sox11 SRY-box transcription factor 11 ISS
ISO
GO_REF:0000024
(MGI:3052265|PMID:15254231)
UniProt
RGD
PMID:15254231 GO_REF:0000024 MGI:3052265 NCBI chr 6:46,629,967...46,631,988
Ensembl chr 6:46,629,974...46,631,983
JBrowse link
G Tcf21 transcription factor 21 IMP RGD PMID:11804032 RGD:727206 NCBI chr 1:23,906,717...23,909,576
Ensembl chr 1:23,906,717...23,909,566
JBrowse link
G Tcf7 transcription factor 7 ISO MGI:1202879 (MGI:3042541|PMID:15057272) RGD PMID:15057272 MGI:3042541 NCBI chr10:37,616,033...37,646,027
Ensembl chr10:37,617,279...37,645,802
JBrowse link
G Tcf7l2 transcription factor 7 like 2 ISO MGI:98507 (MGI:3042541|PMID:15057272) RGD PMID:15057272 MGI:3042541 NCBI chr 1:276,686,911...276,730,517
Ensembl chr 1:276,659,542...276,730,514
Ensembl chr 1:276,659,542...276,730,514
JBrowse link
embryonic digit morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Alx4 ALX homeobox 4 ISO MGI:1857484|MGI:88180 (MGI:1095762|PMID:9268572), (MGI:1095777|PMID:9272948) RGD PMID:9268572 PMID:9272948 MGI:1095762 MGI:1095777 NCBI chr 3:82,548,959...82,585,531
Ensembl chr 3:82,548,959...82,585,531
JBrowse link
G B9d1 B9 domain containing 1 ISO MGI:5301332 (MGI:5300833|PMID:22179047) RGD PMID:22179047 MGI:5300833 NCBI chr10:47,784,294...47,794,399
Ensembl chr10:47,785,033...47,792,590
Ensembl chr10:47,785,033...47,792,590
JBrowse link
G Bmp4 bone morphogenetic protein 4 IEA
ISO
GO_REF:0000107
MGI:108359|MGI:95729 (MGI:1095762|PMID:9268572)
Ensembl
RGD
PMID:9268572 GO_REF:0000107 MGI:1095762 NCBI chr15:20,776,060...20,791,013
Ensembl chr15:20,776,054...20,822,740
JBrowse link
G Bmpr1a bone morphogenetic protein receptor type 1A ISO MGI:88276 (MGI:4430000|PMID:20043884) RGD PMID:20043884 MGI:4430000 NCBI chr16:10,758,278...10,852,170
Ensembl chr16:10,758,527...10,802,512
JBrowse link
G Bpnt2 3'(2'), 5'-bisphosphate nucleotidase 2 ISO MGI:3806990 (MGI:3799383|PMID:18539921) RGD PMID:18539921 MGI:3799383 NCBI chr17:90,191,119...90,218,013
Ensembl chr17:90,188,043...90,218,013
Ensembl chr 5:90,188,043...90,218,013
JBrowse link
G C2cd3 C2 domain containing 3 centriole elongation regulator ISO (MGI:3821640|PMID:19004860) RGD PMID:19004860 MGI:3821640 NCBI chr 1:165,382,279...165,480,088
Ensembl chr 1:165,382,690...165,479,655
JBrowse link
G Chst11 carbohydrate sulfotransferase 11 ISO MGI:3768254 (MGI:3767479|PMID:16079159) RGD PMID:16079159 MGI:3767479 NCBI chr 7:26,641,856...26,890,503
Ensembl chr 7:26,645,422...26,859,716
JBrowse link
G Cplane1 ciliogenesis and planar polarity effector 1 ISO MGI:5297398 (MGI:5648689|PMID:25877302) RGD PMID:25877302 MGI:5648689 NCBI chr 2:57,274,175...57,350,003
NCBI chr 2:57,444,373...57,472,465
Ensembl chr 2:57,276,919...57,348,481
JBrowse link
G Ctnnb1 catenin beta 1 IEA
ISO
GO_REF:0000107
MGI:1338938|MGI:1858008|MGI:2148594|MGI:2158470 (MGI:2670493|PMID:12923052), (MGI:4430000|PMID:20043884)
Ensembl
RGD
PMID:12923052 PMID:20043884 GO_REF:0000107 MGI:2670493 MGI:4430000 NCBI chr 8:129,601,511...129,628,378
Ensembl chr 8:129,617,812...129,627,372
JBrowse link
G Ece1 endothelin converting enzyme 1 ISO
IEA
(PMID:9915973)
GO_REF:0000107
RGD
Ensembl
PMID:9915973 GO_REF:0000107 NCBI chr 5:156,215,469...156,318,652
Ensembl chr 5:156,215,417...156,318,671
JBrowse link
G Fbxw4 F-box and WD repeat domain containing 4 ISO MGI:1857833|MGI:1857834 (MGI:1278141|PMID:9733575), (MGI:1344213|PMID:10471509) RGD PMID:9733575 PMID:10471509 MGI:1278141 MGI:1344213 NCBI chr 1:265,318,526...265,420,503
Ensembl chr 1:265,318,526...265,420,503
JBrowse link
G Flvcr1 FLVCR heme transporter 1 ISO MGI:3776021 (MGI:3775000|PMID:18258918) RGD PMID:18258918 MGI:3775000 NCBI chr13:109,624,167...109,629,609
Ensembl chr13:109,578,074...109,629,482
JBrowse link
G Frem2 FRAS1 related extracellular matrix 2 ISO MGI:3794302 (MGI:5646594|PMID:26234751) RGD PMID:26234751 MGI:5646594 NCBI chr 2:142,747,501...142,885,604
Ensembl chr 2:142,747,501...142,885,604
JBrowse link
G Fuz fuzzy planar cell polarity protein ISO MGI:3531090|MGI:4346364 (MGI:4367921|PMID:19877275), (MGI:5912570|PMID:27158779) RGD PMID:19877275 PMID:27158779 MGI:4367921 MGI:5912570 NCBI chr 1:100,891,832...100,896,811
Ensembl chr 1:100,891,866...100,896,807
JBrowse link
G Gas1 growth arrest-specific 1 ISO MGI:3711070|MGI:98297 (MGI:3710451|PMID:17504941), (MGI:3710452|PMID:17504940) RGD PMID:17504940 PMID:17504941 MGI:3710451 MGI:3710452 NCBI chr17:4,846,116...4,849,350
Ensembl chr17:4,846,789...4,847,940
JBrowse link
G Gja1 gap junction protein, alpha 1 ISO MGI:2445472 (MGI:3849919|PMID:19439426) RGD PMID:19439426 MGI:3849919 NCBI chr20:37,876,650...37,889,097
Ensembl chr20:37,876,650...37,889,089
JBrowse link
G Gli2 GLI family zinc finger 2 ISO MGI:3834146 (MGI:3833793|PMID:19056373) RGD PMID:19056373 MGI:3833793 NCBI chr13:34,829,021...35,049,172
Ensembl chr13:34,829,139...35,048,444
JBrowse link
G Gli3 GLI family zinc finger 3 ISO MGI:1856276|MGI:3798847|MGI:88180|MGI:96203|MGI:96204|MGI:96205 (MGI:1095762|PMID:9268572), (MGI:3692156|PMID:16254602), (MGI:3765370|PMID:17714700), (MGI:3821634|PMID:19036983), (MGI:5439039|PMID:22841643) RGD PMID:9268572 PMID:16254602 PMID:17714700 PMID:19036983 PMID:22841643 MGI:1095762 MGI:3692156 MGI:3765370 MGI:3821634 MGI:5439039 NCBI chr17:52,294,942...52,569,036
Ensembl chr17:52,294,942...52,569,036
JBrowse link
G Gna12 G protein subunit alpha 12 ISO MGI:95776 (MGI:2182490|PMID:12077299) RGD PMID:12077299 MGI:2182490 NCBI chr12:15,890,202...15,971,212
Ensembl chr12:15,890,170...15,971,212
JBrowse link
G Gnaq G protein subunit alpha q IEA
ISO
GO_REF:0000107
MGI:95767 (MGI:2182490|PMID:12077299)
Ensembl
RGD
PMID:12077299 GO_REF:0000107 MGI:2182490 NCBI chr 1:233,382,778...233,622,584
Ensembl chr 1:233,382,708...233,622,786
JBrowse link
G Grhl2 grainyhead-like transcription factor 2 ISO MGI:4942413 (MGI:4943100|PMID:21377456) RGD PMID:21377456 MGI:4943100 NCBI chr 7:76,058,623...76,197,360
Ensembl chr 7:76,059,386...76,197,856
JBrowse link
G Hand2 heart and neural crest derivatives expressed 2 IEA
ISO
GO_REF:0000107
(MGI:2429440|PMID:12070084)
Ensembl
RGD
PMID:12070084 GO_REF:0000107 MGI:2429440 NCBI chr16:36,371,489...36,373,551
Ensembl chr16:36,371,489...36,373,546
JBrowse link
G Hdac1 histone deacetylase 1 ISO UniProtKB:P70288 (MGI:4889029|PMID:21093383) RGD PMID:21093383 MGI:4889029 NCBI chr 5:147,716,664...147,743,723
Ensembl chr 5:147,716,664...147,743,723
JBrowse link
G Hdac2 histone deacetylase 2 ISO UniProtKB:O09106 (MGI:4889029|PMID:21093383) RGD PMID:21093383 MGI:4889029 NCBI chr20:43,084,870...43,108,198
Ensembl chr20:43,084,870...43,108,198
JBrowse link
G Hoxa11 homeobox A11 ISO MGI:96193|MGI:96203 (MGI:2667742|PMID:12869760) RGD PMID:12869760 MGI:2667742 NCBI chr 4:82,296,888...82,301,419
Ensembl chr 4:82,298,152...82,300,503
Ensembl chr 4:82,298,152...82,300,503
JBrowse link
G Hoxc11 homeobox C11 ISO MGI:96172|MGI:96203 (MGI:2667742|PMID:12869760) RGD PMID:12869760 MGI:2667742 NCBI chr 7:144,565,392...144,568,580
Ensembl chr 7:144,565,392...144,567,580
JBrowse link
G Hoxd11 homeobox D11 ISO MGI:95729|MGI:96172|MGI:96193|MGI:96204|MGI:96205 (MGI:2667742|PMID:12869760), (MGI:3765370|PMID:17714700), (MGI:83869|PMID:8900279) RGD PMID:8900279 PMID:12869760 PMID:17714700 MGI:2667742 MGI:3765370 MGI:83869 NCBI chr 3:61,604,256...61,606,874
Ensembl chr 3:61,604,672...61,606,400
JBrowse link
G Hoxd12 homeo box D12 ISO MGI:95729|MGI:96203|MGI:96205 (MGI:3765370|PMID:17714700), (MGI:83869|PMID:8900279) RGD PMID:8900279 PMID:17714700 MGI:3765370 MGI:83869 NCBI chr 3:61,597,382...61,598,503
Ensembl chr 3:61,597,382...61,598,503
JBrowse link
G Hoxd13 homeo box D13 ISO MGI:1918115|MGI:95729|MGI:96203|MGI:96204 (MGI:1097490|PMID:9342042), (MGI:3765370|PMID:17714700), (MGI:83869|PMID:8900279) RGD PMID:8900279 PMID:9342042 PMID:17714700 MGI:1097490 MGI:3765370 MGI:83869 NCBI chr 3:61,590,376...61,593,692
Ensembl chr 3:61,590,376...61,593,692
JBrowse link
G Ift122 intraflagellar transport 122 ISO MGI:3578529 (MGI:3577662|PMID:15755804) RGD PMID:15755804 MGI:3577662 NCBI chr 4:147,756,574...147,826,983
Ensembl chr 4:147,756,553...147,826,997
JBrowse link
G Ift140 intraflagellar transport 140 ISO MGI:4458412 (MGI:5505384|PMID:23469164) RGD PMID:23469164 MGI:5505384 NCBI chr10:14,373,668...14,461,509
Ensembl chr10:14,373,679...14,461,160
JBrowse link
G Ift52 intraflagellar transport 52 ISO (MGI:3579954|PMID:15930098) RGD PMID:15930098 MGI:3579954 NCBI chr 3:159,388,868...159,413,358
Ensembl chr 3:159,392,193...159,413,575
JBrowse link
G Ift88 intraflagellar transport 88 ISO MGI:2157527|MGI:3027342|MGI:3823090|MGI:98297 (MGI:2660994|PMID:12701101), (MGI:3577662|PMID:15755804), (MGI:3579954|PMID:15930098), (MGI:3692156|PMID:16254602), (MGI:3821634|PMID:19036983) RGD PMID:12701101 PMID:15755804 PMID:15930098 PMID:16254602 PMID:19036983 MGI:2660994 MGI:3577662 MGI:3579954 MGI:3692156 MGI:3821634 NCBI chr15:37,690,417...37,786,855
Ensembl chr15:37,691,345...37,784,924
JBrowse link
G Ihh Indian hedgehog signaling molecule ISO (PMID:17889828)
MGI:1347521|MGI:3842979 (MGI:4822496|PMID:20660756)
RGD PMID:17889828 PMID:20660756 MGI:4822496 NCBI chr 9:82,208,223...82,214,440
Ensembl chr 9:82,208,223...82,214,440
JBrowse link
G Intu inturned planar cell polarity protein IEA
ISO
GO_REF:0000107
(MGI:5644615|PMID:25774014)
(PMID:27158779)
Ensembl
RGD
PMID:25774014 PMID:27158779 GO_REF:0000107 MGI:5644615 NCBI chr 2:127,589,325...127,611,705
Ensembl chr 2:127,459,012...127,525,437
JBrowse link
G Lmbr1 limb development membrane protein 1 ISO MGI:3579991 (MGI:2151954|PMID:11606546) RGD PMID:11606546 MGI:2151954 NCBI chr 4:2,116,094...2,274,111
Ensembl chr 4:2,116,094...2,201,749
JBrowse link
G Lnpk lunapark, ER junction formation factor ISO MGI:96205 (MGI:1097490|PMID:9342042) RGD PMID:9342042 MGI:1097490 NCBI chr 3:61,432,128...61,494,828
Ensembl chr 3:61,433,863...61,494,778
JBrowse link
G Lrp4 LDL receptor related protein 4 ISO MGI:2661383|MGI:3580702 (MGI:3623169|PMID:16517118) RGD PMID:16517118 MGI:3623169 NCBI chr 3:80,362,643...80,416,684
Ensembl chr 3:80,362,858...80,416,679
JBrowse link
G Lrp5 LDL receptor related protein 5 ISO MGI:1298218 (MGI:3045836|PMID:15142971) RGD PMID:15142971 MGI:3045836 NCBI chr 1:218,816,833...218,920,147
Ensembl chr 1:218,816,841...218,920,094
JBrowse link
G Lrp6 LDL receptor related protein 6 ISO MGI:1278315|MGI:2156191 (MGI:3045836|PMID:15142971), (MGI:4413372|PMID:19795512) RGD PMID:15142971 PMID:19795512 MGI:3045836 MGI:4413372 NCBI chr 4:168,194,054...168,323,962
Ensembl chr 4:168,194,927...168,323,751
JBrowse link
G Map3k20 mitogen-activated protein kinase kinase kinase 20 ISO (PMID:26755636)
MGI:5903729 (MGI:5771618|PMID:26755636)
RGD PMID:26755636 MGI:5771618 NCBI chr 3:58,965,025...59,120,507
Ensembl chr 3:58,965,552...59,067,369
JBrowse link
G Mks1 MKS transition zone complex subunit 1 IEA
ISO
GO_REF:0000107
MGI:4410614|MGI:4433029|MGI:4887578 (MGI:4367169|PMID:19776033), (MGI:4868517|PMID:21045211), (MGI:5487695|PMID:23454480)
Ensembl
RGD
PMID:19776033 PMID:21045211 PMID:23454480 GO_REF:0000107 MGI:4367169 MGI:4868517 MGI:5487695 NCBI chr10:75,149,814...75,160,481
Ensembl chr10:75,149,814...75,160,480
JBrowse link
G Msx1 msh homeobox 1 ISO MGI:97169 (MGI:4948979|PMID:21465616) RGD PMID:21465616 MGI:4948979 NCBI chr14:77,712,262...77,716,061
Ensembl chr14:77,712,240...77,716,059
JBrowse link
G Msx2 msh homeobox 2 ISO MGI:97168 (MGI:4948979|PMID:21465616) RGD PMID:21465616 MGI:4948979 NCBI chr17:11,683,862...11,689,527
Ensembl chr17:11,683,862...11,689,527
JBrowse link
G Mycn MYCN proto-oncogene, bHLH transcription factor IEA
ISO
GO_REF:0000107
(MGI:3790402|PMID:17360777)
Ensembl
RGD
PMID:17360777 GO_REF:0000107 MGI:3790402 NCBI chr 6:38,222,554...38,228,419
Ensembl chr 6:38,222,555...38,228,379
JBrowse link
G Nog noggin ISO
IEA
(PMID:10080184)
GO_REF:0000107
RGD
Ensembl
PMID:10080184 GO_REF:0000107 NCBI chr10:76,811,759...76,813,386
Ensembl chr10:76,811,759...76,813,386
JBrowse link
G Osr1 odd-skipped related transcription factor 1 ISO UniProtKB:Q91ZD1 (MGI:4950000|PMID:21262216) RGD PMID:21262216 MGI:4950000 NCBI chr 6:35,314,431...35,321,458
Ensembl chr 6:35,314,444...35,321,667
JBrowse link
G Osr2 odd-skipped related transciption factor 2 ISO UniProtKB:Q9WVG7 (MGI:4950000|PMID:21262216) RGD PMID:21262216 MGI:4950000 NCBI chr 7:74,047,820...74,055,096
Ensembl chr 7:74,047,814...74,055,256
JBrowse link
G Rab23 RAB23, member RAS oncogene family ISO MGI:2137533 (MGI:1267118|PMID:9636176), (MGI:3577662|PMID:15755804) RGD PMID:9636176 PMID:15755804 MGI:1267118 MGI:3577662 NCBI chr 9:38,469,784...38,496,185
Ensembl chr 9:38,470,298...38,495,176
JBrowse link
G Ror2 receptor tyrosine kinase-like orphan receptor 2 ISO MGI:2386954|MGI:3793279|MGI:96533 (MGI:4822496|PMID:20660756) RGD PMID:20660756 MGI:4822496 NCBI chr17:11,953,552...12,134,386
Ensembl chr17:11,953,552...12,134,386
JBrowse link
G Sall1 spalt-like transcription factor 1 ISO (PMID:18280297)
(MGI:4461128|PMID:18470945)
RGD PMID:18280297 PMID:18470945 MGI:4461128 NCBI chr19:23,387,737...23,405,025
Ensembl chr19:23,389,375...23,405,039
JBrowse link
G Sfrp2 secreted frizzled-related protein 2 ISO MGI:3810257 (MGI:3806414|PMID:18729207) RGD PMID:18729207 MGI:3806414 NCBI chr 2:182,723,732...182,731,277
Ensembl chr 2:182,723,854...182,731,764
JBrowse link
G Shh sonic hedgehog signaling molecule IEA
ISO
ISS
GO_REF:0000107
MGI:95655|MGI:98715 (MGI:3039193|PMID:15075292), (MGI:3579954|PMID:15930098), (MGI:3710451|PMID:17504941), (MGI:3710452|PMID:17504940), (MGI:4822496|PMID:20660756), (MGI:5559673|PMID:11044396)
GO_REF:0000024
Ensembl
RGD
UniProt
PMID:11044396 PMID:15075292 PMID:15930098 PMID:17504940 PMID:17504941 PMID:20660756 GO_REF:0000024 GO_REF:0000107 MGI:3039193 MGI:3579954 MGI:3710451 MGI:3710452 MGI:4822496 MGI:5559673 NCBI chr 4:718,538...727,691
Ensembl chr 4:718,538...727,691
JBrowse link
G Smad4 SMAD family member 4 IEA
ISO
GO_REF:0000107
(MGI:5444318|PMID:23034633)
Ensembl
RGD
PMID:23034633 GO_REF:0000107 MGI:5444318 NCBI chr18:69,626,682...69,657,373
Ensembl chr18:69,627,757...69,671,199
JBrowse link
G Tbc1d32 TBC1 domain family, member 32 ISO MGI:4440463 (MGI:4439200|PMID:20159594) RGD PMID:20159594 MGI:4439200 NCBI chr20:37,463,879...37,701,268
Ensembl chr20:37,465,278...37,700,937
JBrowse link
G Tbx2 T-box transcription factor 2 ISO (MGI:3487212|PMID:15459098) RGD PMID:15459098 MGI:3487212 NCBI chr10:73,278,932...73,290,764
Ensembl chr10:73,279,119...73,289,921
JBrowse link
G Tbx3 T-box transcription factor 3 ISS
ISO
GO_REF:0000024
MGI:5538565 (MGI:5532232|PMID:23844108)
(PMID:12116211), (PMID:9207801)
UniProt
RGD
PMID:9207801 PMID:12116211 PMID:23844108 GO_REF:0000024 MGI:5532232 NCBI chr12:42,479,518...42,494,588
Ensembl chr12:42,480,560...42,492,526
JBrowse link
G Tmem107 transmembrane protein 107 ISO (MGI:5432629|PMID:22698544) RGD PMID:22698544 MGI:5432629 NCBI chr10:55,653,694...55,656,270
Ensembl chr10:55,653,946...55,656,270
JBrowse link
G Tmem231 transmembrane protein 231 ISO MGI:4284576 (MGI:5300833|PMID:22179047) RGD PMID:22179047 MGI:5300833 NCBI chr19:44,137,444...44,158,624
Ensembl chr19:44,137,423...44,158,624
JBrowse link
G Traf3ip1 TRAF3 interacting protein 1 ISO MGI:4129326 (MGI:5298450|PMID:21945076) RGD PMID:21945076 MGI:5298450 NCBI chr 9:98,621,499...98,658,223
Ensembl chr 9:98,621,506...98,656,901
JBrowse link
G Ttbk2 tau tubulin kinase 2 ISO MGI:5496675 (MGI:5493390|PMID:23141541) RGD PMID:23141541 MGI:5493390 NCBI chr 3:112,677,932...112,789,615
Ensembl chr 3:112,684,152...112,789,289
JBrowse link
G Tulp3 TUB like protein 3 ISO MGI:2388066 (MGI:3841503|PMID:19286674), (MGI:3844764|PMID:19334287) RGD PMID:19286674 PMID:19334287 MGI:3841503 MGI:3844764 NCBI chr 4:161,636,084...161,677,807
Ensembl chr 4:161,637,892...161,658,519
JBrowse link
G Twist1 twist family bHLH transcription factor 1 ISO MGI:3038818 (MGI:3042355|PMID:15030764) RGD PMID:15030764 MGI:3042355 NCBI chr 6:53,401,241...53,403,235
Ensembl chr 6:53,401,109...53,403,214
JBrowse link
G Wdpcp WD repeat containing planar cell polarity effector IEA
ISO
GO_REF:0000107
MGI:5558098|MGI:5558100 (MGI:5544506|PMID:24302887)
(PMID:27158779)
Ensembl
RGD
PMID:24302887 PMID:27158779 GO_REF:0000107 MGI:5544506 NCBI chr14:106,393,959...106,759,511
Ensembl chr14:106,393,959...106,759,505
JBrowse link
G Wnt5a Wnt family member 5A IEA
ISO
GO_REF:0000107
MGI:1857617 (MGI:4413372|PMID:19795512)
Ensembl
RGD
PMID:19795512 GO_REF:0000107 MGI:4413372 NCBI chr16:4,469,451...4,490,271
Ensembl chr16:4,469,468...4,489,860
JBrowse link
G Wnt7a Wnt family member 7A ISO (PMID:16826533) RGD PMID:16826533 NCBI chr 4:122,994,425...123,040,609
Ensembl chr 4:122,994,425...123,040,609
JBrowse link
G Zbtb16 zinc finger and BTB domain containing 16 IMP RGD PMID:19191224 RGD:2312786 NCBI chr 8:52,980,226...53,146,765
Ensembl chr 8:52,985,313...53,146,953
JBrowse link
embryonic ectodermal digestive tract development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Vps52 VPS52 subunit of GARP complex ISO (MGI:5449815|PMID:23142660) RGD PMID:23142660 MGI:5449815 NCBI chr20:5,431,997...5,441,736
Ensembl chr20:5,432,004...5,441,706
JBrowse link
embryonic ectodermal digestive tract morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Foxf1 forkhead box F1 ISO (PMID:19500772) RGD PMID:19500772 NCBI chr19:53,012,306...53,016,100
Ensembl chr19:53,012,332...53,016,086
JBrowse link
embryonic epithelial tube formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ret ret proto-oncogene ISO MGI:1930016 (MGI:3513229|PMID:15569713) RGD PMID:15569713 MGI:3513229 NCBI chr 4:150,202,170...150,249,196
Ensembl chr 4:150,202,058...150,244,372
JBrowse link
G Shank3 SH3 and multiple ankyrin repeat domains 3 IEA
ISO
GO_REF:0000107
MGI:97902 (MGI:3513229|PMID:15569713)
Ensembl
RGD
PMID:15569713 GO_REF:0000107 MGI:3513229 NCBI chr 7:130,474,278...130,534,679
Ensembl chr 7:130,474,279...130,534,679
JBrowse link
G Wnt4 Wnt family member 4 IEA
ISO
GO_REF:0000107
(MGI:3624584|PMID:16546160)
Ensembl
RGD
PMID:16546160 GO_REF:0000107 MGI:3624584 NCBI chr 5:155,649,238...155,668,065
Ensembl chr 5:155,649,217...155,672,579
JBrowse link
embryonic eye morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldh1a1 aldehyde dehydrogenase 1 family, member A1 ISO MGI:1861722 (MGI:3608158|PMID:16207763), (MGI:3624188|PMID:16611695) RGD PMID:16207763 PMID:16611695 MGI:3608158 MGI:3624188 NCBI chr 1:238,222,689...238,264,381
Ensembl chr 1:238,222,521...238,264,330
JBrowse link
G Aldh1a3 aldehyde dehydrogenase 1 family, member A3 ISO MGI:1353450|MGI:3043947 (MGI:3608158|PMID:16207763), (MGI:3624188|PMID:16611695) RGD PMID:16207763 PMID:16611695 MGI:3608158 MGI:3624188 NCBI chr 1:127,302,920...127,337,828
Ensembl chr 1:127,301,128...127,337,882
JBrowse link
G Efemp1 EGF containing fibulin extracellular matrix protein 1 IEA
ISO
GO_REF:0000107
(PMID:25406291)
Ensembl
RGD
PMID:25406291 GO_REF:0000107 NCBI chr14:113,202,382...113,294,993
Ensembl chr14:113,202,419...113,295,014
JBrowse link
G Fbn1 fibrillin 1 ISO (PMID:25406291) RGD PMID:25406291 NCBI chr 3:117,569,708...117,766,160
Ensembl chr 3:117,569,697...117,766,120
JBrowse link
G Fbn2 fibrillin 2 ISO (PMID:25406291) RGD PMID:25406291 NCBI chr18:53,068,495...53,272,254
Ensembl chr18:53,068,495...53,181,503
JBrowse link
G Foxl2 forkhead box L2 ISO MGI:3044226 (MGI:3043431|PMID:15056605) RGD PMID:15056605 MGI:3043431 NCBI chr 8:107,194,492...107,197,644
Ensembl chr 8:107,194,551...107,195,675
JBrowse link
G Mfap2 microfibril associated protein 2 ISO
IBA
(PMID:25406291)
PMID:21873635
RGD PMID:25406291, PMID:21873635 RGD:13792537 NCBI chr 5:159,534,202...159,539,750
Ensembl chr 5:159,534,202...159,539,750
JBrowse link
G Mfap5 microfibril associated protein 5 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:155,313,671...155,336,228
Ensembl chr 4:155,313,671...155,336,228
JBrowse link
G Rarb retinoic acid receptor, beta ISO MGI:97858 (MGI:3608158|PMID:16207763) RGD PMID:16207763 MGI:3608158 NCBI chr15:9,915,223...10,262,599
Ensembl chr15:10,120,206...10,262,599
JBrowse link
G Rarg retinoic acid receptor, gamma ISO MGI:97857 (MGI:3608158|PMID:16207763) RGD PMID:16207763 MGI:3608158 NCBI chr 7:143,840,739...143,863,206
Ensembl chr 7:143,839,980...143,863,186
JBrowse link
G Vax2 ventral anterior homeobox 2 IEA
ISO
GO_REF:0000107
MGI:2159246 (MGI:1349226|PMID:10595508), (MGI:2157790|PMID:11830579)
Ensembl
RGD
PMID:10595508 PMID:11830579 GO_REF:0000107 MGI:1349226 MGI:2157790 NCBI chr 4:115,388,839...115,412,515
Ensembl chr 4:115,388,839...115,412,515
JBrowse link
embryonic foregut morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acvr2b activin A receptor type 2B IEA
ISO
GO_REF:0000107
MGI:1857709 (MGI:1861876|PMID:10921901)
Ensembl
RGD
PMID:10921901 GO_REF:0000107 MGI:1861876 NCBI chr 8:128,087,308...128,126,776
Ensembl chr 8:128,087,345...128,118,746
JBrowse link
G Ctnnb1 catenin beta 1 IEA
ISO
GO_REF:0000107
MGI:2148567 (MGI:3820452|PMID:18692041)
Ensembl
RGD
PMID:18692041 GO_REF:0000107 MGI:3820452 NCBI chr 8:129,601,511...129,628,378
Ensembl chr 8:129,617,812...129,627,372
JBrowse link
G Epb41l5 erythrocyte membrane protein band 4.1 like 5 ISO MGI:3822451 (MGI:3821807|PMID:18794329) RGD PMID:18794329 MGI:3821807 NCBI chr13:35,622,472...35,673,449
Ensembl chr13:35,580,098...35,668,968
JBrowse link
G Foxf1 forkhead box F1 ISO MGI:1929432 (MGI:2135612|PMID:11493558) RGD PMID:11493558 MGI:2135612 NCBI chr19:53,012,306...53,016,100
Ensembl chr19:53,012,332...53,016,086
JBrowse link
G Foxp4 forkhead box P4 ISO MGI:3055161 (MGI:3054576|PMID:15361625) RGD PMID:15361625 MGI:3054576 NCBI chr 9:15,068,378...15,124,962
Ensembl chr 9:15,068,399...15,125,318
JBrowse link
G Gata4 GATA binding protein 4 ISO MGI:2179443|MGI:2386265 (MGI:87488|PMID:9136932), (MGI:87489|PMID:9136933) RGD PMID:9136932 PMID:9136933 MGI:87488 MGI:87489 NCBI chr15:46,386,703...46,458,679
Ensembl chr15:46,386,712...46,432,965
JBrowse link
G Nckap1 NCK-associated protein 1 ISO MGI:3578145 (MGI:3701029|PMID:16831833) RGD PMID:16831833 MGI:3701029 NCBI chr 3:67,725,180...67,804,680
Ensembl chr 3:67,725,947...67,787,990
JBrowse link
G Shh sonic hedgehog signaling molecule IEA
ISO
GO_REF:0000107
MGI:1857796 (MGI:1277744|PMID:9731532)
Ensembl
RGD
PMID:9731532 GO_REF:0000107 MGI:1277744 NCBI chr 4:718,538...727,691
Ensembl chr 4:718,538...727,691
JBrowse link
G Smad2 SMAD family member 2 ISO MGI:1201674 (MGI:3618021|PMID:15183723) RGD PMID:15183723 MGI:3618021 NCBI chr18:72,550,107...72,612,078
Ensembl chr18:72,550,219...72,612,078
JBrowse link
G Smad3 SMAD family member 3 ISO MGI:108051 (MGI:3618021|PMID:15183723) RGD PMID:15183723 MGI:3618021 NCBI chr 8:68,569,530...68,678,349
Ensembl chr 8:68,569,530...68,678,349
JBrowse link
G Sox17 SRY-box transcription factor 17 ISO MGI:2179440|MGI:3717118|MGI:4356113 (MGI:4355651|PMID:19619492), (MGI:4415813|PMID:18462699), (MGI:4946573|PMID:21305474) RGD PMID:18462699 PMID:19619492 PMID:21305474 MGI:4355651 MGI:4415813 MGI:4946573 NCBI chr 5:14,890,318...14,895,907
Ensembl chr 5:14,890,408...14,895,907
JBrowse link
embryonic forelimb morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldh1a2 aldehyde dehydrogenase 1 family, member A2 ISO MGI:2180721 (MGI:3046038|PMID:15069081), (MGI:4422129|PMID:20034106) RGD PMID:15069081 PMID:20034106 MGI:3046038 MGI:4422129 NCBI chr 8:77,640,234...77,719,488
Ensembl chr 8:77,640,222...77,719,489
JBrowse link
G Alx3 ALX homeobox 3 ISO MGI:108359 (MGI:2151109|PMID:11641221) RGD PMID:11641221 MGI:2151109 NCBI chr 2:210,376,510...210,386,928
Ensembl chr 2:210,381,829...210,386,928
JBrowse link
G Alx4 ALX homeobox 4 ISO MGI:1277097 (MGI:2151109|PMID:11641221) RGD PMID:11641221 MGI:2151109 NCBI chr 3:82,548,959...82,585,531
Ensembl chr 3:82,548,959...82,585,531
JBrowse link
G Cacna1c calcium voltage-gated channel subunit alpha1 C ISO
IEA
(PMID:15454078)
GO_REF:0000107
RGD
Ensembl
PMID:15454078 GO_REF:0000107 NCBI chr 4:150,635,808...151,270,790
Ensembl chr 4:150,641,066...150,829,913
JBrowse link
G Crabp2 cellular retinoic acid binding protein 2 ISO MGI:1857508 (MGI:71462|PMID:7720575) RGD PMID:7720575 MGI:71462 NCBI chr 2:187,322,416...187,326,794
Ensembl chr 2:184,882,969...184,883,505
JBrowse link
G Ctnnb1 catenin beta 1 IEA
ISO
GO_REF:0000107
(MGI:3055626|PMID:15371327)
Ensembl
RGD
PMID:15371327 GO_REF:0000107 MGI:3055626 NCBI chr 8:129,601,511...129,628,378
Ensembl chr 8:129,617,812...129,627,372
JBrowse link
G En1 engrailed homeobox 1 ISO MGI:98961 (MGI:1194987|PMID:9362463) RGD PMID:9362463 MGI:1194987 NCBI chr13:36,532,758...36,537,888
Ensembl chr13:36,532,758...36,537,093
JBrowse link
G Hoxa11 homeobox A11 ISO MGI:96203 (MGI:5462316|PMID:22916278) RGD PMID:22916278 MGI:5462316 NCBI chr 4:82,296,888...82,301,419
Ensembl chr 4:82,298,152...82,300,503
Ensembl chr 4:82,298,152...82,300,503
JBrowse link
G Hoxa13 homeo box A13 ISO MGI:2150506 (MGI:3530958|PMID:15733672) RGD PMID:15733672 MGI:3530958 Ensembl chr 4:82,228,017...82,229,397 JBrowse link
G Hoxa9 homeobox A9 ISO MGI:96210 (MGI:78984|PMID:8625797) RGD PMID:8625797 MGI:78984
G Hoxd11 homeobox D11 ISO MGI:96172 (MGI:5462316|PMID:22916278) RGD PMID:22916278 MGI:5462316 NCBI chr 3:61,604,256...61,606,874
Ensembl chr 3:61,604,672...61,606,400
JBrowse link
G Hoxd9 homeo box D9 IEA
ISO
GO_REF:0000107
MGI:2150414|MGI:96180 (MGI:78984|PMID:8625797)
Ensembl
RGD
PMID:8625797 GO_REF:0000107 MGI:78984 NCBI chr 3:61,620,192...61,622,360
Ensembl chr 3:61,620,192...61,622,359
JBrowse link
G Ift122 intraflagellar transport 122 ISO (MGI:4888042|PMID:21209331) RGD PMID:21209331 MGI:4888042 NCBI chr 4:147,756,574...147,826,983
Ensembl chr 4:147,756,553...147,826,997
JBrowse link
G Lnpk lunapark, ER junction formation factor ISO MGI:1857660 (MGI:1097490|PMID:9342042), (MGI:5462316|PMID:22916278) RGD PMID:9342042 PMID:22916278 MGI:1097490 MGI:5462316 NCBI chr 3:61,432,128...61,494,828
Ensembl chr 3:61,433,863...61,494,778
JBrowse link
G Lrp6 LDL receptor related protein 6 ISO MGI:1922667|MGI:2156191|MGI:4415718|MGI:98961 (MGI:1891551|PMID:11029008), (MGI:3578068|PMID:15880584), (MGI:3774879|PMID:18256198), (MGI:4413396|PMID:19653321) RGD PMID:11029008 PMID:15880584 PMID:18256198 PMID:19653321 MGI:1891551 MGI:3578068 MGI:3774879 MGI:4413396 NCBI chr 4:168,194,054...168,323,962
Ensembl chr 4:168,194,927...168,323,751
JBrowse link
G Mecom MDS1 and EVI1 complex locus ISO MGI:2158381 (MGI:3686680|PMID:17029558) RGD PMID:17029558 MGI:3686680 NCBI chr 2:117,396,084...117,993,604
Ensembl chr 2:117,396,007...117,454,769
JBrowse link
G Msx1 msh homeobox 1 ISO MGI:97169 (MGI:4948979|PMID:21465616) RGD PMID:21465616 MGI:4948979 NCBI chr14:77,712,262...77,716,061
Ensembl chr14:77,712,240...77,716,059
JBrowse link
G Msx2 msh homeobox 2 IEA
ISO
GO_REF:0000107
MGI:97168 (MGI:4948979|PMID:21465616)
Ensembl
RGD
PMID:21465616 GO_REF:0000107 MGI:4948979 NCBI chr17:11,683,862...11,689,527
Ensembl chr17:11,683,862...11,689,527
JBrowse link
G Nipbl NIPBL, cohesin loading factor ISO (PMID:19242925), (PMID:8291537) RGD PMID:8291537 PMID:19242925 NCBI chr 2:57,508,830...57,676,197
Ensembl chr 2:57,509,428...57,600,820
JBrowse link
G Osr1 odd-skipped related transcription factor 1 ISO UniProtKB:Q91ZD1 (MGI:4950000|PMID:21262216) RGD PMID:21262216 MGI:4950000 NCBI chr 6:35,314,431...35,321,458
Ensembl chr 6:35,314,444...35,321,667
JBrowse link
G Osr2 odd-skipped related transciption factor 2 ISO UniProtKB:Q9WVG7 (MGI:4950000|PMID:21262216), (PMID:11520675) RGD PMID:11520675 PMID:21262216 MGI:4950000 NCBI chr 7:74,047,820...74,055,096
Ensembl chr 7:74,047,814...74,055,256
JBrowse link
G Rdh10 retinol dehydrogenase 10 ISO (MGI:3709664|PMID:17473173) RGD PMID:17473173 MGI:3709664 NCBI chr 5:2,605,265...2,631,905
Ensembl chr 5:2,603,505...2,632,030
JBrowse link
G Reck reversion-inducing-cysteine-rich protein with kazal motifs ISO MGI:4830337 (MGI:5424521|PMID:23213437) RGD PMID:23213437 MGI:5424521 NCBI chr 5:59,348,568...59,415,169
Ensembl chr 5:59,348,639...59,415,135
JBrowse link
G Rpgrip1l Rpgrip1-like ISO MGI:3716208 (MGI:3715393|PMID:17553904) RGD PMID:17553904 MGI:3715393 NCBI chr19:17,115,266...17,208,055
Ensembl chr19:17,115,412...17,208,055
JBrowse link
G Rspo2 R-spondin 2 ISO MGI:1298218|MGI:3045965 (MGI:3774879|PMID:18256198) RGD PMID:18256198 MGI:3774879 NCBI chr 7:81,919,911...82,059,659
Ensembl chr 7:81,924,050...82,059,789
JBrowse link
G Runx2 RUNX family transcription factor 2 IEA
ISO
GO_REF:0000107
MGI:2176466 (MGI:5462316|PMID:22916278)
Ensembl
RGD
PMID:22916278 GO_REF:0000107 MGI:5462316 NCBI chr 9:18,564,743...18,773,092
Ensembl chr 9:18,564,927...18,773,092
JBrowse link
G Shh sonic hedgehog signaling molecule IEA
ISO
GO_REF:0000107
MGI:1857796 (MGI:1928592|PMID:11118883), (MGI:2149276|PMID:11476582)
Ensembl
RGD
PMID:11118883 PMID:11476582 GO_REF:0000107 MGI:1928592 MGI:2149276 NCBI chr 4:718,538...727,691
Ensembl chr 4:718,538...727,691
JBrowse link
G Shox2 short stature homeobox 2 ISO (MGI:5462316|PMID:22916278) RGD PMID:22916278 MGI:5462316 NCBI chr 2:164,118,175...164,126,783
Ensembl chr 2:164,118,191...164,126,783
JBrowse link
G Tbx3 T-box transcription factor 3 ISO
ISS
(PMID:12116211)
GO_REF:0000024
RGD
UniProt
PMID:12116211 GO_REF:0000024 NCBI chr12:42,479,518...42,494,588
Ensembl chr12:42,480,560...42,492,526
JBrowse link
G Tbx5 T-box transcription factor 5 IEA
IBA
ISO
ISS
GO_REF:0000107
PMID:21873635
MGI:2387851 (MGI:2150876|PMID:11572777), (MGI:2448173|PMID:12490567)
GO_REF:0000024
(PMID:16183809)
Ensembl
RGD
UniProt
PMID:11572777 PMID:12490567 PMID:16183809, PMID:21873635 GO_REF:0000024 GO_REF:0000107 MGI:2150876 MGI:2448173, RGD:13792537 NCBI chr12:42,059,688...42,148,226
Ensembl chr12:42,097,626...42,148,146
JBrowse link
G Tfap2a transcription factor AP-2 alpha ISS
ISO
GO_REF:0000024
(MGI:1313057|PMID:9811866)
UniProt
RGD
PMID:9811866 GO_REF:0000024 MGI:1313057 NCBI chr17:24,653,342...24,670,457
Ensembl chr17:24,654,902...24,670,457
JBrowse link
G Tp63 tumor protein p63 ISO MGI:5882553|MGI:5882555 (MGI:5824492|PMID:25503409) RGD PMID:25503409 MGI:5824492 NCBI chr11:78,234,853...78,456,559
Ensembl chr11:78,234,800...78,456,501
JBrowse link
G Twist1 twist family bHLH transcription factor 1 ISO MGI:1857265 (MGI:2180404|PMID:12175489) RGD PMID:12175489 MGI:2180404 NCBI chr 6:53,401,241...53,403,235
Ensembl chr 6:53,401,109...53,403,214
JBrowse link
G Wnt3 Wnt family member 3 ISO MGI:2450902|MGI:2450903 (MGI:2450015|PMID:12569130) RGD PMID:12569130 MGI:2450015 NCBI chr10:91,830,709...91,874,907
Ensembl chr10:91,830,654...91,874,793
JBrowse link
G Wnt7a Wnt family member 7A ISO (PMID:16826533)
MGI:1298218|MGI:1857009|MGI:95389 (MGI:1194987|PMID:9362463), (MGI:3578068|PMID:15880584)
RGD PMID:9362463 PMID:15880584 PMID:16826533 MGI:1194987 MGI:3578068 MGI:48652 NCBI chr 4:122,994,425...123,040,609
Ensembl chr 4:122,994,425...123,040,609
JBrowse link
G Wnt9a Wnt family member 9A ISO (MGI:3055626|PMID:15371327) RGD PMID:15371327 MGI:3055626 NCBI chr10:45,659,045...45,686,103
Ensembl chr10:45,659,143...45,681,393
JBrowse link
embryonic genitalia morphogenesis term browser