Chrd (chordin) - Rat Genome Database

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Gene: Chrd (chordin) Rattus norvegicus
Analyze
Symbol: Chrd
Name: chordin
RGD ID: 620181
Description: Predicted to enable BMP binding activity; heparin binding activity; and proteoglycan binding activity. Predicted to be involved in several processes, including cell surface receptor signaling pathway; circulatory system development; and modulation of chemical synaptic transmission. Predicted to act upstream of or within several processes, including gastrulation; negative regulation of BMP signaling pathway; and negative regulation of osteoblast differentiation. Predicted to be located in extracellular space. Predicted to be active in cell surface and extracellular region. Orthologous to human CHRD (chordin); PARTICIPATES IN Bone morphogenetic proteins signaling pathway; transforming growth factor-beta superfamily mediated signaling pathway; INTERACTS WITH 1-naphthyl isothiocyanate; 17beta-estradiol; 17beta-estradiol 3-benzoate.
Type: protein-coding
RefSeq Status: VALIDATED
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21180,171,994 - 80,181,166 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl1180,171,994 - 80,180,673 (-)Ensembl
Rnor_6.01183,858,503 - 83,867,543 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1183,858,503 - 83,867,203 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01186,930,421 - 86,939,186 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41182,401,701 - 82,410,401 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11182,460,992 - 82,462,358 (-)NCBI
Celera1179,011,743 - 79,020,443 (-)NCBICelera
Cytogenetic Map11q23NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
artery morphogenesis  (ISO)
BMP signaling pathway  (ISO)
BMP signaling pathway involved in heart development  (ISO)
BMP signaling pathway involved in spinal cord dorsal/ventral patterning  (IEA,ISO)
cell population proliferation  (ISO)
central nervous system development  (ISO)
cranial skeletal system development  (ISO)
descending aorta development  (ISO)
dorsal/ventral pattern formation  (IBA,ISO)
embryonic axis specification  (ISO)
embryonic heart tube development  (ISO)
epithelial cell fate commitment  (ISO)
exploration behavior  (ISO)
fibroblast growth factor receptor signaling pathway  (ISO)
forebrain development  (ISO)
gastrulation with mouth forming second  (ISO)
in utero embryonic development  (ISO)
long-term synaptic potentiation  (ISO)
maintenance of protein location  (ISO)
mesenchymal cell fate commitment  (ISO)
mesoderm formation  (ISO)
negative regulation of BMP signaling pathway  (IBA,IEA,ISO)
negative regulation of cell migration  (IEA,ISO)
negative regulation of osteoblast differentiation  (IEA,ISO)
neural crest formation  (ISO)
neuron fate commitment  (ISO)
osteoblast differentiation  (ISO)
pattern specification process  (ISO)
positive regulation of cell adhesion  (IEA,ISO)
positive regulation of mesenchymal cell proliferation  (IEA,ISO)
presynaptic modulation of chemical synaptic transmission  (ISO)
protein import  (ISO)
regulation of neuronal synaptic plasticity  (ISO)
short-term synaptic potentiation  (ISO)
skeletal system development  (ISO)
smoothened signaling pathway  (ISO)
specification of segmental identity, mandibular segment  (ISO)
synapse organization  (ISO)
venous blood vessel morphogenesis  (ISO)
visual learning  (ISO)

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

Additional References at PubMed
PMID:10688202   PMID:11472837   PMID:11784076   PMID:12397106   PMID:12810603   PMID:15057822   PMID:15381701   PMID:15780974   PMID:16449796   PMID:18533030   PMID:19850029   PMID:24231736  
PMID:27546891  


Genomics

Comparative Map Data
Chrd
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21180,171,994 - 80,181,166 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl1180,171,994 - 80,180,673 (-)Ensembl
Rnor_6.01183,858,503 - 83,867,543 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1183,858,503 - 83,867,203 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01186,930,421 - 86,939,186 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41182,401,701 - 82,410,401 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11182,460,992 - 82,462,358 (-)NCBI
Celera1179,011,743 - 79,020,443 (-)NCBICelera
Cytogenetic Map11q23NCBI
CHRD
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383184,380,054 - 184,390,739 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl3184,380,073 - 184,390,736 (+)EnsemblGRCh38hg38GRCh38
GRCh373184,097,842 - 184,108,527 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 363185,580,555 - 185,590,311 (+)NCBINCBI36hg18NCBI36
Build 343185,580,562 - 185,590,320NCBI
Celera3182,538,936 - 182,548,675 (+)NCBI
Cytogenetic Map3q27.1NCBI
HuRef3181,483,159 - 181,513,643 (+)NCBIHuRef
CHM1_13184,062,275 - 184,072,053 (+)NCBICHM1_1
T2T-CHM13v2.03187,189,309 - 187,199,979 (+)NCBI
Chrd
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391620,551,492 - 20,561,134 (+)NCBIGRCm39mm39
GRCm39 Ensembl1620,551,877 - 20,561,134 (+)Ensembl
GRCm381620,731,425 - 20,742,384 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1620,733,127 - 20,742,384 (+)EnsemblGRCm38mm10GRCm38
MGSCv371620,733,200 - 20,742,457 (+)NCBIGRCm37mm9NCBIm37
MGSCv361620,646,670 - 20,655,925 (+)NCBImm8
Celera1621,298,477 - 21,307,717 (+)NCBICelera
Cytogenetic Map16B1NCBI
cM Map1612.51NCBI
Chrd
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542023,112,093 - 23,120,036 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542023,111,690 - 23,120,038 (-)NCBIChiLan1.0ChiLan1.0
CHRD
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.13189,899,342 - 189,908,573 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3189,898,856 - 189,908,573 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v03181,417,140 - 181,460,236 (+)NCBIMhudiblu_PPA_v0panPan3
CHRD
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13417,255,770 - 17,264,776 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3417,255,562 - 17,271,713 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3421,341,312 - 21,350,291 (+)NCBI
ROS_Cfam_1.03417,163,252 - 17,172,231 (+)NCBI
ROS_Cfam_1.0 Ensembl3417,163,252 - 17,171,973 (+)Ensembl
UMICH_Zoey_3.13417,200,125 - 17,209,104 (+)NCBI
UNSW_CanFamBas_1.03417,196,194 - 17,205,174 (+)NCBI
UU_Cfam_GSD_1.03417,425,160 - 17,434,173 (+)NCBI
Chrd
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405602119,406,169 - 119,415,345 (-)NCBI
SpeTri2.0NW_0049365785,498,473 - 5,507,195 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CHRD
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl13122,266,615 - 122,277,509 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.113122,266,632 - 122,277,513 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.213131,758,103 - 131,767,009 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CHRD
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1155,030,618 - 5,040,399 (-)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl155,030,457 - 5,039,991 (-)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366606313,808,558 - 13,818,236 (-)NCBIVero_WHO_p1.0
Chrd
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473072,201,644 - 72,209,843 (-)EnsemblHetGla_female_1.0hetGla2
HetGla 1.0NW_00462473072,201,239 - 72,209,843 (-)NCBIHetGla_female_1.0hetGla2


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
724554Iddm17Insulin dependent diabetes mellitus QTL 170.001blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)111897620886241447Rat
724563Uae10Urinary albumin excretion QTL 106urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)112767241082846715Rat
1300110Stl7Serum triglyceride level QTL 74.64blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)112952841882566702Rat
1300135Rf19Renal function QTL 193.38blood creatinine amount (VT:0005328)creatinine clearance (CMO:0000765)114094618882566702Rat
2312566Glom20Glomerulus QTL 203.60.001kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)114428575982566702Rat
1581565Pur10Proteinuria QTL 100.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)114480331882846466Rat
1581572Uae35Urinary albumin excretion QTL 350.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)114480331882846466Rat
724561Plsm4Polydactyly-luxate syndrome (PLS) morphotypes QTL 40.0003forelimb integrity trait (VT:0010562)front foot phalanges count (CMO:0001947)115445753486241447Rat
4889521Gluco62Glucose level QTL 622.820.001blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)115513672982993457Rat
7411658Foco27Food consumption QTL 2716.20.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)115635142486241447Rat
631506Bp104Blood pressure QTL 1042.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)115980279482566545Rat
70208Niddm22Non-insulin dependent diabetes mellitus QTL 223.61blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)115980279482566553Rat
10058954Gmadr7Adrenal mass QTL 72.490.0049adrenal gland mass (VT:0010420)both adrenal glands wet weight to body weight ratio (CMO:0002411)116034659086241447Rat
1549848Bvd6Brain ventricular dilatation QTL 63.10.0001brain ventricle morphology trait (VT:0000822)hydrocephalus severity score (CMO:0001881)116611332182169223Rat
634339Niddm50Non-insulin dependent diabetes mellitus QTL 503.32blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)116642214886241447Rat
1354593Stl12Serum triglyceride level QTL 123.36blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)116642214886241447Rat
1354656Bvd3Brain ventricular dilatation QTL 33.640.001brain ventricle morphology trait (VT:0000822)hydrocephalus severity score (CMO:0001881)116944607082846715Rat
10450831Scl80Serum cholesterol level QTL 804.70.01blood LDL cholesterol amount (VT:0000181)blood low density lipoprotein cholesterol level (CMO:0000053)117695713183051965Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:268
Count of miRNA genes:172
Interacting mature miRNAs:188
Transcripts:ENSRNOT00000002394
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 1 7 7 7 17 7 18
Low 2 43 44 34 5 34 8 11 57 28 19 11 8
Below cutoff 6 14 4

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000002394   ⟹   ENSRNOP00000002394
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1180,171,994 - 80,180,673 (-)Ensembl
Rnor_6.0 Ensembl1183,858,503 - 83,867,203 (-)Ensembl
RefSeq Acc Id: NM_057134   ⟹   NP_476475
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21180,171,994 - 80,180,694 (-)NCBI
Rnor_6.01183,858,503 - 83,867,203 (-)NCBI
Rnor_5.01186,930,421 - 86,939,186 (-)NCBI
RGSC_v3.41182,401,701 - 82,410,401 (-)RGD
Celera1179,011,743 - 79,020,443 (-)RGD
Sequence:
RefSeq Acc Id: XM_006248556   ⟹   XP_006248618
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21180,171,994 - 80,181,166 (-)NCBI
Rnor_6.01183,858,503 - 83,867,543 (-)NCBI
Rnor_5.01186,930,421 - 86,939,186 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006248557   ⟹   XP_006248619
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21180,171,994 - 80,181,166 (-)NCBI
Rnor_6.01183,858,503 - 83,867,543 (-)NCBI
Rnor_5.01186,930,421 - 86,939,186 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017597850   ⟹   XP_017453339
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21180,174,157 - 80,181,166 (-)NCBI
Rnor_6.01183,860,678 - 83,867,543 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039087913   ⟹   XP_038943841
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21180,171,994 - 80,180,874 (-)NCBI
RefSeq Acc Id: XM_039087914   ⟹   XP_038943842
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21180,171,994 - 80,180,397 (-)NCBI
RefSeq Acc Id: XM_039087915   ⟹   XP_038943843
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21180,176,691 - 80,181,166 (-)NCBI
RefSeq Acc Id: XR_005490963
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21180,173,149 - 80,181,166 (-)NCBI
RefSeq Acc Id: XR_005490964
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21180,176,317 - 80,181,166 (-)NCBI
Reference Sequences
RefSeq Acc Id: NP_476475   ⟸   NM_057134
- Peptide Label: precursor
- UniProtKB: A0A140TA94 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006248618   ⟸   XM_006248556
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006248619   ⟸   XM_006248557
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_017453339   ⟸   XM_017597850
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: ENSRNOP00000002394   ⟸   ENSRNOT00000002394
RefSeq Acc Id: XP_038943841   ⟸   XM_039087913
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038943842   ⟸   XM_039087914
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038943843   ⟸   XM_039087915
- Peptide Label: isoform X4
Protein Domains
CHRD   VWFC

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q63148-F1-model_v2 AlphaFold Q63148 1-951 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13698267
Promoter ID:EPDNEW_R8792
Type:single initiation site
Name:Chrd_1
Description:chordin
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01183,867,196 - 83,867,256EPDNEW

Strain Variation

Strain Sequence Variants (MRatBN7.2)
ACI/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN-Lx/CubMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BUF/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH2/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH3/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
DA/OlaHsd (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/DuCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE16/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE18/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GK/FarMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB10/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB2/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB20/IpcvMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB31/IpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB4/IpcvMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEW/Crl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF10A/StmMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF11/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1A/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1C/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF2B/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF3/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF4/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LH/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LL/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LN/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/NRrrcMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MR/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MWF/Hsd (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
PVG/Seac (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHR/OlalpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/A3NCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SR/JrHsd (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SS/JrHsdMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WAG/RijCrl (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WN/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:620181 AgrOrtholog
BioCyc Gene G2FUF-20757 BioCyc
Ensembl Genes ENSRNOG00000001750 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000002394 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000002394 ENTREZGENE, UniProtKB/TrEMBL
InterPro Chordin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CHRD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  VWF_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:117275 UniProtKB/TrEMBL
NCBI Gene 117275 ENTREZGENE
Pfam CHRD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  VWC UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Chrd PhenoGen
PIRSF Chordin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE CHRD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  VWFC_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  VWFC_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART CHRD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  VWC UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A140TA94 ENTREZGENE, UniProtKB/TrEMBL
  CHRD_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2002-08-06 Chrd  chordin      Symbol and Name status set to provisional 70820 PROVISIONAL