Ncapg2 (non-SMC condensin II complex, subunit G2) - Rat Genome Database

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Gene: Ncapg2 (non-SMC condensin II complex, subunit G2) Rattus norvegicus
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Symbol: Ncapg2
Name: non-SMC condensin II complex, subunit G2
RGD ID: 1308406
Description: Predicted to enable several functions, including bHLH transcription factor binding activity; histone deacetylase regulator activity; and transmembrane receptor protein tyrosine kinase inhibitor activity. Predicted to be involved in mitotic sister chromatid segregation; positive regulation of chromosome segregation; and positive regulation of chromosome separation. Predicted to act upstream of with a negative effect on transcription by RNA polymerase II. Predicted to act upstream of or within erythrocyte differentiation and inner cell mass cell proliferation. Predicted to be located in condensed nuclear chromosome and nuclear speck. Predicted to be part of condensin complex. Predicted to be active in nucleus. Orthologous to human NCAPG2 (non-SMC condensin II complex subunit G2); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; bisphenol A; cadmium dichloride.
Type: protein-coding
RefSeq Status: MODEL
Previously known as: condensin-2 complex subunit G2; leucine zipper protein 5; LOC362798; Luzp5; RGD1308406; similar to Hypothetical protein FLJ20311
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.26137,342,449 - 137,418,083 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl6137,342,943 - 137,415,159 (+)Ensembl
Rnor_6.06144,291,313 - 144,362,454 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl6144,291,974 - 144,363,947 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.06153,219,779 - 153,291,396 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.46143,693,508 - 143,751,084 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.16143,699,694 - 143,748,409 (+)NCBI
Celera6135,005,891 - 135,080,045 (+)NCBICelera
Cytogenetic Map6q33NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,1-dichloroethene  (ISO)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (ISO)
2,2',4,4',5,5'-hexachlorobiphenyl  (ISO)
2,2',5,5'-tetrachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-diaminotoluene  (ISO)
2-butoxyethanol  (ISO)
3',5'-cyclic UMP  (ISO)
3,3',5-triiodo-L-thyronine  (ISO)
3,4-methylenedioxymethamphetamine  (ISO)
3-methylcholanthrene  (ISO)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
arsenite(3-)  (ISO)
azathioprine  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
benzo[b]fluoranthene  (ISO)
bisphenol A  (EXP,ISO)
cadmium atom  (ISO)
cadmium dichloride  (EXP,ISO)
calcitriol  (ISO)
carbamazepine  (ISO)
carbon nanotube  (ISO)
choline  (ISO)
chromium(6+)  (ISO)
cisplatin  (ISO)
cobalt dichloride  (ISO)
coumestrol  (ISO)
cyclosporin A  (ISO)
dioxygen  (ISO)
Enterolactone  (ISO)
flutamide  (EXP)
folic acid  (ISO)
fulvestrant  (ISO)
gentamycin  (EXP)
ivermectin  (ISO)
L-methionine  (ISO)
lidocaine  (EXP)
lucanthone  (ISO)
methotrexate  (ISO)
methyl methanesulfonate  (ISO)
N-nitrosodiethylamine  (ISO)
N-Nitrosopyrrolidine  (ISO)
oxaliplatin  (EXP)
ozone  (ISO)
palbociclib  (ISO)
paracetamol  (EXP,ISO)
PCB138  (ISO)
phenethyl isothiocyanate  (ISO)
phenobarbital  (ISO)
pirinixic acid  (ISO)
quercetin  (ISO)
resveratrol  (ISO)
rotenone  (EXP)
silicon dioxide  (ISO)
sodium arsenite  (ISO)
Soman  (EXP)
succimer  (ISO)
sunitinib  (ISO)
tamoxifen  (ISO)
tert-butyl hydroperoxide  (ISO)
testosterone  (ISO)
tetrachloromethane  (ISO)
thioacetamide  (EXP)
titanium dioxide  (ISO)
topotecan  (EXP)
trimellitic anhydride  (ISO)
valproic acid  (EXP)
vitamin E  (ISO)

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
3. GOA pipeline RGD automated data pipeline
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:14729962   PMID:16673016   PMID:19946888   PMID:20622854   PMID:21795393  


Genomics

Comparative Map Data
Ncapg2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.26137,342,449 - 137,418,083 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl6137,342,943 - 137,415,159 (+)Ensembl
Rnor_6.06144,291,313 - 144,362,454 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl6144,291,974 - 144,363,947 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.06153,219,779 - 153,291,396 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.46143,693,508 - 143,751,084 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.16143,699,694 - 143,748,409 (+)NCBI
Celera6135,005,891 - 135,080,045 (+)NCBICelera
Cytogenetic Map6q33NCBI
NCAPG2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh387158,631,169 - 158,704,804 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl7158,631,169 - 158,704,804 (-)EnsemblGRCh38hg38GRCh38
GRCh377158,423,861 - 158,497,495 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 367158,116,764 - 158,190,281 (-)NCBINCBI36hg18NCBI36
Celera7152,856,604 - 152,930,122 (-)NCBI
Cytogenetic Map7q36.3NCBI
HuRef7152,163,223 - 152,236,542 (-)NCBIHuRef
CHM1_17158,432,826 - 158,505,899 (-)NCBICHM1_1
T2T-CHM13v2.07159,858,401 - 159,932,192 (-)NCBI
CRA_TCAGchr7v27157,628,658 - 157,701,735 (-)NCBI
Ncapg2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3912116,368,969 - 116,427,152 (+)NCBIGRCm39mm39
GRCm39 Ensembl12116,369,022 - 116,427,351 (+)Ensembl
GRCm3812116,405,351 - 116,463,532 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl12116,405,402 - 116,463,731 (+)EnsemblGRCm38mm10GRCm38
MGSCv3712117,643,875 - 117,702,004 (+)NCBIGRCm37mm9NCBIm37
MGSCv3612116,847,398 - 116,905,738 (+)NCBImm8
Cytogenetic Map12F2NCBI
Ncapg2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955579895,249 - 955,517 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955579896,507 - 955,515 (-)NCBIChiLan1.0ChiLan1.0
NCAPG2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.17161,905,762 - 161,977,093 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl7161,905,762 - 161,977,093 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v07150,441,385 - 150,513,391 (-)NCBIMhudiblu_PPA_v0panPan3
NCAPG2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11620,649,088 - 20,712,208 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1620,649,489 - 20,712,208 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1621,154,091 - 21,218,358 (-)NCBI
ROS_Cfam_1.01622,380,599 - 22,444,279 (-)NCBI
ROS_Cfam_1.0 Ensembl1622,380,583 - 22,444,286 (-)Ensembl
UMICH_Zoey_3.11620,747,809 - 20,812,041 (-)NCBI
UNSW_CanFamBas_1.01621,332,079 - 21,396,341 (-)NCBI
UU_Cfam_GSD_1.01621,386,219 - 21,450,501 (-)NCBI
Ncapg2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118643,581 - 702,013 (+)NCBI
SpeTri2.0NW_004936856567,765 - 625,745 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NCAPG2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl18653,224 - 717,200 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.118653,182 - 713,825 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
NCAPG2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.121126,658,802 - 126,731,005 (-)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl21126,658,702 - 126,728,510 (-)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366607223,054,778 - 23,128,409 (-)NCBIVero_WHO_p1.0
Ncapg2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624800432,258 - 498,718 (+)EnsemblHetGla_female_1.0hetGla2
HetGla 1.0NW_004624800432,307 - 494,361 (+)NCBIHetGla_female_1.0hetGla2

Position Markers
RH132799  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.26137,415,249 - 137,415,446 (+)MAPPERmRatBN7.2
Rnor_6.06144,360,452 - 144,360,648NCBIRnor6.0
Rnor_5.06153,288,647 - 153,288,843UniSTSRnor5.0
RGSC_v3.46143,763,563 - 143,763,759UniSTSRGSC3.4
Celera6135,078,043 - 135,078,239UniSTS
RH 3.4 Map6919.9UniSTS
Cytogenetic Map6q33UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
731173Uae22Urinary albumin excretion QTL 2210.1urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)665531555140994061Rat
2290393Uae37Urinary albumin excretion QTL 370.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)665531555140994061Rat
61414Pia3Pristane induced arthritis QTL 34.5joint integrity trait (VT:0010548)post-insult time to onset of experimental arthritis (CMO:0001450)694968928137848904Rat
12801411Schws8Schwannoma susceptibility QTL 8nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)694968928139968928Rat
8552796Vie3Viral induced encephalitis QTL 32.6brain integrity trait (VT:0010579)encephalitis incidence/prevalence measurement (CMO:0002361)696833997140994061Rat
1358355Srcrt4Stress Responsive Cort QTL 46.39blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)6100364669140994061Rat
71111Iddm8Insulin dependent diabetes mellitus QTL 81.90.002blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)6105156861140994061Rat
737976Pia24Pristane induced arthritis QTL 24joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)6112636280140994061Rat
1641917Colcr5Colorectal carcinoma resistance QTL 53.180.0009intestine integrity trait (VT:0010554)benign colorectal tumor number (CMO:0001795)6122549046137801795Rat
2293085Iddm29Insulin dependent diabetes mellitus QTL 297.66blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)6122549046140286318Rat
61329Eae9Experimental allergic encephalomyelitis QTL 93.7body mass (VT:0001259)change in body weight (CMO:0002045)6122549046140994061Rat
2312560Pur20Proteinuria QTL 202.10.005total urine protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)6125628133137801795Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:22
Count of miRNA genes:19
Interacting mature miRNAs:22
Transcripts:ENSRNOT00000035255
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 1 26 25 18 16 18 28 16 31
Low 2 17 32 23 3 23 7 7 46 19 10 11 7
Below cutoff 1 4 1

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_001061369 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006225900 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006225901 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006225902 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006225903 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006225904 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006240708 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006240709 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006240710 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006240711 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006240712 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008765006 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008776342 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017594528 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017603317 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039078080 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039078081 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039078083 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039078084 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039078085 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039078086 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039078087 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039078088 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039078089 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_343124 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005486258 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide CH474038 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JACYVU010000170 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000035255   ⟹   ENSRNOP00000033392
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl6137,342,943 - 137,415,159 (+)Ensembl
Rnor_6.0 Ensembl6144,291,974 - 144,363,947 (+)Ensembl
RefSeq Acc Id: XM_039078080   ⟹   XP_038934008
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.26137,343,352 - 137,418,083 (+)NCBI
RefSeq Acc Id: XM_039078081   ⟹   XP_038934009
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.26137,343,353 - 137,415,630 (+)NCBI
RefSeq Acc Id: XM_039078083   ⟹   XP_038934011
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.26137,343,373 - 137,415,630 (+)NCBI
RefSeq Acc Id: XM_039078084   ⟹   XP_038934012
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.26137,343,359 - 137,415,630 (+)NCBI
RefSeq Acc Id: XM_039078085   ⟹   XP_038934013
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.26137,342,449 - 137,415,630 (+)NCBI
RefSeq Acc Id: XM_039078086   ⟹   XP_038934014
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.26137,342,449 - 137,415,630 (+)NCBI
RefSeq Acc Id: XM_039078087   ⟹   XP_038934015
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.26137,343,402 - 137,415,630 (+)NCBI
RefSeq Acc Id: XM_039078088   ⟹   XP_038934016
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.26137,343,378 - 137,415,630 (+)NCBI
RefSeq Acc Id: XM_039078089   ⟹   XP_038934017
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.26137,343,399 - 137,415,630 (+)NCBI
RefSeq Acc Id: XM_343124   ⟹   XP_343125
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.26137,343,352 - 137,415,630 (+)NCBI
Rnor_6.06144,291,933 - 144,362,454 (+)NCBI
Rnor_5.06153,219,779 - 153,291,396 (+)NCBI
RGSC_v3.46143,693,508 - 143,751,084 (+)RGD
Sequence:
RefSeq Acc Id: XR_005486258
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.26137,343,352 - 137,394,538 (+)NCBI
Reference Sequences
RefSeq Acc Id: XP_343125   ⟸   XM_343124
- Peptide Label: isoform X2
- UniProtKB: D4AAL2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000033392   ⟸   ENSRNOT00000035255
RefSeq Acc Id: XP_038934013   ⟸   XM_039078085
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038934014   ⟸   XM_039078086
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038934008   ⟸   XM_039078080
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038934009   ⟸   XM_039078081
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038934012   ⟸   XM_039078084
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038934011   ⟸   XM_039078083
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038934016   ⟸   XM_039078088
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038934017   ⟸   XM_039078089
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038934015   ⟸   XM_039078087
- Peptide Label: isoform X1

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D4AAL2-F1-model_v2 AlphaFold D4AAL2 1-1137 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13694913
Promoter ID:EPDNEW_R5433
Type:multiple initiation site
Name:Ncapg2_1
Description:non-SMC condensin II complex, subunit G2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.06144,291,993 - 144,292,053EPDNEW

Strain Variation

Strain Sequence Variants (mRatBN7.2)
ACI/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN-Lx/CubMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BUF/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH2/CubMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH3/CubMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
DA/OlaHsd (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/DuCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE16/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE18/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GK/FarMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB10/IpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB2/IpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB20/IpcvMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB31/IpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB4/IpcvMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEW/Crl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF10A/StmMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF11/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1A/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1C/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF2B/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF3/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF4/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LH/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LL/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LN/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/NRrrcMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MR/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MWF/Hsd (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
PVG/Seac (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHR/OlalpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/A3NCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SR/JrHsd (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SS/JrHsdMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WAG/RijCrl (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/NCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WN/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
Damaging Variants


Assembly: Rnor_6.0

Chromosome Start Pos End Pos Reference Nucleotide Variant Nucleotide Variant Type Strain
6 144333845 144333846 C A snv MNS/Gib (RGD), CDS


Assembly: Rnor_5.0

Chromosome Start Pos End Pos Reference Nucleotide Variant Nucleotide Variant Type Strain
6 153262040 153262041 C A snv MNS/Gib (KNAW), BDIX.Cg-Tal/NemOda (KyushuU), BDIX/NemOda (KyushuU)


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1308406 AgrOrtholog
BioCyc Gene G2FUF-35511 BioCyc
Ensembl Genes ENSRNOG00000004968 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000033392 ENTREZGENE
  ENSRNOP00000033392.5 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000035255 ENTREZGENE
  ENSRNOT00000035255.6 UniProtKB/TrEMBL
Gene3D-CATH 1.25.10.10 UniProtKB/TrEMBL
InterPro ARM-like UniProtKB/TrEMBL
  ARM-type_fold UniProtKB/TrEMBL
  Condensin2_G2 UniProtKB/TrEMBL
KEGG Report rno:362798 UniProtKB/TrEMBL
NCBI Gene 362798 ENTREZGENE
Pfam Condensin2nSMC UniProtKB/TrEMBL
PhenoGen Ncapg2 PhenoGen
Superfamily-SCOP ARM-type_fold UniProtKB/TrEMBL
UniProt D4AAL2 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2010-04-23 Ncapg2  non-SMC condensin II complex, subunit G2  Luzp5  leucine zipper protein 5  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 Luzp5  leucine zipper protein 5   Luzp5_predicted  leucine zipper protein 5 (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-30 Luzp5_predicted  leucine zipper protein 5 (predicted)  RGD1308406_predicted  similar to Hypothetical protein FLJ20311 (predicted)  Symbol and Name updated 1299863 APPROVED
2005-01-20 RGD1308406_predicted  similar to Hypothetical protein FLJ20311 (predicted)  LOC362798_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC362798_predicted  similar to Hypothetical protein FLJ20311 (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL