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ONTOLOGY REPORT - ANNOTATIONS


Term:response to nutrient
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Accession:GO:0007584 term browser browse the term
Definition:Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a nutrient stimulus.
Synonyms:exact_synonym: response to nutrients
 narrow_synonym: nutritional response pathway



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response to nutrient term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G A2m alpha-2-macroglobulin IEP RGD PMID:9446838 RGD:1598510 NCBI chr 4:154,897,770...154,947,787
Ensembl chr 4:154,897,877...154,947,786
JBrowse link
G Aacs acetoacetyl-CoA synthetase IDA RGD PMID:3082367 RGD:2301027 NCBI chr12:31,113,098...31,156,411
Ensembl chr12:31,113,098...31,160,954
JBrowse link
G Abca1 ATP binding cassette subfamily A member 1 IEP RGD PMID:15710224 RGD:1598545 NCBI chr 5:67,678,267...67,801,162
Ensembl chr 5:67,681,297...67,801,170
JBrowse link
G Abcg5 ATP binding cassette subfamily G member 5 IEP RGD PMID:15710224 RGD:1598545 NCBI chr 6:9,965,118...9,990,563
Ensembl chr 6:9,965,118...9,990,563
JBrowse link
G Abcg8 ATP binding cassette subfamily G member 8 IEP RGD PMID:15710224 RGD:1598545 NCBI chr 6:9,945,629...9,964,912
Ensembl chr 6:9,945,629...9,964,912
JBrowse link
G Acaa1a acetyl-CoA acyltransferase 1A IDA RGD PMID:8954134 RGD:1598676 NCBI chr 8:119,079,401...119,088,624
Ensembl chr 8:119,079,775...119,088,624
JBrowse link
G Acadm acyl-CoA dehydrogenase medium chain IEP RGD PMID:15863369 RGD:1598687 NCBI chr 2:242,858,865...242,883,036
Ensembl chr 2:242,858,865...242,883,147
JBrowse link
G Acsl1 acyl-CoA synthetase long-chain family member 1 IEP RGD PMID:15811777 RGD:1625742 NCBI chr16:45,755,246...45,821,541
Ensembl chr16:45,755,254...45,821,541
JBrowse link
G Acsl3 acyl-CoA synthetase long-chain family member 3 IEP RGD PMID:16772660 RGD:1599807 NCBI chr 9:80,140,996...80,164,636
Ensembl chr 9:80,115,112...80,164,627
JBrowse link
G Acsl4 acyl-CoA synthetase long-chain family member 4 IEP RGD PMID:16772660 RGD:1599807 NCBI chr  X:105,942,794...106,006,573
Ensembl chr  X:105,942,799...106,006,427
JBrowse link
G Acsl5 acyl-CoA synthetase long-chain family member 5 IEP RGD PMID:16772660 RGD:1599807 NCBI chr 1:254,289,513...254,336,608
Ensembl chr 1:254,292,521...254,336,607
JBrowse link
G Acsl6 acyl-CoA synthetase long-chain family member 6 IEP RGD PMID:16772660 RGD:1599807 NCBI chr10:38,439,914...38,501,182
Ensembl chr10:38,440,080...38,498,757
JBrowse link
G Adipoq adiponectin, C1Q and collagen domain containing IEP RGD PMID:17217160 RGD:1599130 NCBI chr11:77,721,912...77,735,644
Ensembl chr11:77,721,912...77,735,564
JBrowse link
G Adipor2 adiponectin receptor 2 IEP RGD PMID:16483885 RGD:1625763 NCBI chr 4:152,524,604...152,588,848
Ensembl chr 4:152,524,623...152,559,355
JBrowse link
G Adsl adenylosuccinate lyase IDA RGD PMID:7128902 RGD:1598767 NCBI chr 7:112,479,256...112,503,439
Ensembl chr 7:112,479,271...112,503,760
JBrowse link
G Agl amylo-alpha-1, 6-glucosidase, 4-alpha-glucanotransferase IDA RGD PMID:1413626 RGD:1598782 NCBI chr 2:204,705,053...204,760,966
Ensembl chr 2:204,705,053...204,760,828
JBrowse link
G Agtr1b angiotensin II receptor, type 1b IEP RGD PMID:9062366 RGD:1598887 NCBI chr 2:102,844,969...102,920,232
Ensembl chr 2:102,844,969...102,920,232
JBrowse link
G Ahcy adenosylhomocysteinase IDA RGD PMID:11575573 RGD:1598897 NCBI chr 3:143,569,134...143,584,359
Ensembl chr 3:143,569,094...143,584,393
JBrowse link
G Akr1c3 aldo-keto reductase family 1, member C3 involved_in ISO (PMID:19007764) RGD PMID:19007764 NCBI chr17:66,110,970...66,127,867
Ensembl chr17:66,110,963...66,127,873
JBrowse link
G Alad aminolevulinate dehydratase IDA RGD PMID:2394940 RGD:1599023 NCBI chr 5:75,961,993...75,972,334
Ensembl chr 5:75,961,993...75,972,474
JBrowse link
G Alb albumin IEP RGD PMID:20227002 RGD:2325685 NCBI chr14:17,607,397...17,622,814
Ensembl chr14:17,607,381...17,622,836
JBrowse link
G Aldh3a1 aldehyde dehydrogenase 3 family, member A1 IEP RGD PMID:7751973 RGD:2300308 NCBI chr10:45,892,993...45,902,680
Ensembl chr10:45,892,924...45,902,681
JBrowse link
G Alox5 arachidonate 5-lipoxygenase IEP RGD PMID:16956363 RGD:1626155 NCBI chr 4:149,531,329...149,578,696
Ensembl chr 4:149,531,515...149,578,743
JBrowse link
G Amelx amelogenin, X-linked IEP RGD PMID:12667550 RGD:1599089 NCBI chr  X:25,076,362...25,087,660
Ensembl chr  X:25,076,362...25,087,660
JBrowse link
G Apaf1 apoptotic peptidase activating factor 1 IEP RGD PMID:14973070 RGD:2325748 NCBI chr 7:25,494,143...25,579,540
Ensembl chr 7:25,494,609...25,579,540
JBrowse link
G Apoa1 apolipoprotein A1 IEP RGD PMID:7556148 PMID:2504861 RGD:1599154, RGD:1599162 NCBI chr 8:46,527,251...46,529,035
Ensembl chr 8:46,527,144...46,529,035
JBrowse link
G Apoc3 apolipoprotein C3 IEP RGD PMID:7811230 RGD:1599187 NCBI chr 8:46,531,478...46,533,658
Ensembl chr 8:46,531,478...46,533,583
JBrowse link
G Arg2 arginase 2 IEP flavanol-containing dietary RGD PMID:18348861 RGD:4143283 NCBI chr 6:97,936,002...97,961,379
Ensembl chr 6:97,936,002...97,961,378
JBrowse link
G Arsa arylsulfatase A IDA RGD PMID:4403 RGD:1599236 NCBI chr 7:120,542,788...120,547,577
Ensembl chr 7:120,543,362...120,548,783
JBrowse link
G Arsb arylsulfatase B IDA RGD PMID:2290353 RGD:1599230 NCBI chr 2:25,002,210...25,162,675
Ensembl chr 2:25,002,346...25,162,671
JBrowse link
G Asl argininosuccinate lyase IEP RGD PMID:2547341 RGD:1599290 NCBI chr12:26,659,664...26,677,136
Ensembl chr12:26,659,565...26,679,662
JBrowse link
G Ass1 argininosuccinate synthase 1 IEP RGD PMID:15257170 RGD:1599306 NCBI chr 3:14,747,355...14,796,909
Ensembl chr 3:14,747,368...14,796,903
JBrowse link
G Bche butyrylcholinesterase IDA RGD PMID:15002734 RGD:1599460 NCBI chr 2:158,308,674...158,401,148
Ensembl chr 2:158,307,584...158,401,148
JBrowse link
G Bckdha branched chain keto acid dehydrogenase E1 subunit alpha IEP RGD PMID:8109974 RGD:1599469 NCBI chr 1:81,138,946...81,167,765
Ensembl chr 1:81,138,947...81,167,862
JBrowse link
G Bckdhb branched chain keto acid dehydrogenase E1 subunit beta involved_in IEP
IBA
PMID:21873635 RGD
GO_Central
PMID:8109974 PMID:21873635 RGD:1599469, RGD:13792537 NCBI chr 8:84,845,264...85,027,812
Ensembl chr 8:84,845,264...85,027,812
JBrowse link
G Bcl2 BCL2, apoptosis regulator IEP RGD PMID:16216918 RGD:1599487 NCBI chr13:22,689,783...22,853,920 JBrowse link
G Bdh1 3-hydroxybutyrate dehydrogenase 1 IEP hyperlipidic diet RGD PMID:1804504 RGD:4105447 NCBI chr11:69,302,534...69,343,173
Ensembl chr11:69,302,534...69,337,671
JBrowse link
G Brca1 BRCA1, DNA repair associated IEP RGD PMID:17044772 RGD:1599498 NCBI chr10:86,417,441...86,477,762
Ensembl chr10:86,418,000...86,477,304
JBrowse link
G Brca2 BRCA2, DNA repair associated IEP RGD PMID:14583453 RGD:1342419 NCBI chr12:59,492...103,789
Ensembl chr12:59,819...100,567
JBrowse link
G C2 complement C2 IEP RGD PMID:6776243 RGD:1600580 NCBI chr20:3,951,474...3,970,376
Ensembl chr20:3,951,474...3,976,505
JBrowse link
G Cav1 caveolin 1 IEP RGD PMID:16335790 RGD:2289099 NCBI chr 4:45,640,624...45,673,708
Ensembl chr 4:45,634,918...45,673,705
JBrowse link
G Cckar cholecystokinin A receptor IEP RGD PMID:15127944 RGD:2313376 NCBI chr14:57,292,397...57,300,747
Ensembl chr14:57,292,397...57,300,747
JBrowse link
G Ccl28 C-C motif chemokine ligand 28 IEP high salt diet RGD PMID:19829664 RGD:4892132 NCBI chr 2:51,601,354...51,625,999
Ensembl chr 2:51,601,331...51,625,997
JBrowse link
G Cd36 CD36 molecule IEP RGD PMID:17640331 RGD:2307225 NCBI chr 4:17,317,343...17,410,084
Ensembl chr 4:17,354,466...17,513,903
JBrowse link
G Cd3e CD3e molecule IDA RGD PMID:10498748 RGD:1600792 NCBI chr 8:45,303,848...45,315,297
Ensembl chr 8:45,303,852...45,315,022
JBrowse link
G Cebpa CCAAT/enhancer binding protein alpha IEP RGD PMID:16856317 RGD:1625375 NCBI chr 1:87,759,631...87,762,303
Ensembl chr 1:87,759,433...87,762,412
JBrowse link
G Chat choline O-acetyltransferase IEP RGD PMID:17192613 RGD:1600843 NCBI chr16:7,657,362...7,717,093
Ensembl chr16:7,657,362...7,717,093
JBrowse link
G Cnr1 cannabinoid receptor 1 IEP RGD PMID:19807847 RGD:2314641 NCBI chr 5:48,408,543...48,436,099
Ensembl chr 5:48,408,574...48,435,099
JBrowse link
G Col1a1 collagen type I alpha 1 chain IEP RGD PMID:15042712 RGD:1600915 NCBI chr10:79,883,622...79,900,625
Ensembl chr10:79,883,622...79,900,624
JBrowse link
G Cox4i1 cytochrome c oxidase subunit 4i1 IEP RGD PMID:18725894 RGD:2301376 NCBI chr19:48,721,680...48,727,920
Ensembl chr19:48,721,199...48,727,921
JBrowse link
G Cp ceruloplasmin IEP RGD PMID:16597684 RGD:1599628 NCBI chr 2:102,439,433...102,498,075
Ensembl chr 2:102,439,624...102,498,075
JBrowse link
G Ctrb1 chymotrypsinogen B1 IEP RGD PMID:3885943 RGD:2303368 NCBI chr19:39,652,931...39,657,666
Ensembl chr19:39,652,933...39,657,688
JBrowse link
G Cubn cubilin IMP RGD PMID:15616221 RGD:1599657 NCBI chr17:76,385,046...76,593,133
Ensembl chr17:76,385,060...76,593,231
JBrowse link
G Cybb cytochrome b-245 beta chain IEP RGD PMID:16784966 RGD:1599678 NCBI chr  X:13,360,583...13,392,517
Ensembl chr  X:13,359,430...13,392,586
JBrowse link
G Cyp11a1 cytochrome P450, family 11, subfamily a, polypeptide 1 IEP RGD PMID:16844298 RGD:1599695 NCBI chr 8:58,422,807...58,434,342
Ensembl chr 8:58,404,669...58,434,338
JBrowse link
G Cyp11b2 cytochrome P450, family 11, subfamily b, polypeptide 2 IEP potassium RGD PMID:16882930 RGD:1600074 NCBI chr 7:106,838,590...106,845,004
Ensembl chr 7:106,838,590...106,845,004
JBrowse link
G Cyp1b1 cytochrome P450, family 1, subfamily b, polypeptide 1 IEP soy protein isolate RGD PMID:11739881 RGD:7829754 NCBI chr 6:15,342,312...15,350,886
Ensembl chr 6:15,342,344...15,350,917
JBrowse link
G Cyp2c7 cytochrome P450, family 2, subfamily c, polypeptide 7 IEP RGD PMID:8534269 RGD:2301474 NCBI chr 1:237,332,641...237,388,714
Ensembl chr 1:237,332,659...237,388,709
JBrowse link
G Cyp3a23-3a1 cytochrome P450, family 3, subfamily a, polypeptide 23-polypeptide 1 IEP RGD PMID:16380645 RGD:1625391 NCBI chr12:9,256,159...9,285,020
Ensembl chr12:9,254,475...9,285,030
JBrowse link
G Dad1 defender against cell death 1 IEP RGD PMID:11444866 RGD:1601045 NCBI chr15:27,677,285...27,697,275
Ensembl chr15:27,677,268...27,697,347
JBrowse link
G Ddit3 DNA-damage inducible transcript 3 IEP RGD PMID:12609979 RGD:1299136 NCBI chr 7:63,115,645...63,121,203
Ensembl chr 7:63,116,380...63,121,201
JBrowse link
G Dpyd dihydropyrimidine dehydrogenase IDA RGD PMID:8252488 RGD:1599792 NCBI chr 2:206,609,043...207,474,982
Ensembl chr 2:206,609,122...207,474,982
JBrowse link
G Epo erythropoietin IEP RGD PMID:19136608 RGD:2313644 NCBI chr12:19,204,258...19,207,948
Ensembl chr12:19,204,508...19,207,946
JBrowse link
G Ercc1 ERCC excision repair 1, endonuclease non-catalytic subunit IEP RGD PMID:14670002 RGD:2316276 NCBI chr 1:78,971,310...79,007,963
Ensembl chr 1:78,996,390...79,007,963
JBrowse link
G Fads1 fatty acid desaturase 1 IEP RGD PMID:16333142 RGD:1625417 NCBI chr 1:206,827,724...206,842,734
Ensembl chr 1:206,827,765...206,842,734
JBrowse link
G Gatm glycine amidinotransferase IDA RGD PMID:11595668 RGD:1599817 NCBI chr 3:109,658,919...109,675,508
Ensembl chr 3:109,658,951...109,684,129
JBrowse link
G Gclc glutamate-cysteine ligase, catalytic subunit IEP RGD PMID:22906634 RGD:11049541 NCBI chr 8:78,629,899...78,668,547
Ensembl chr 8:78,630,127...78,668,544
JBrowse link
G Gclm glutamate cysteine ligase, modifier subunit IEP RGD PMID:22906634 RGD:11049541 NCBI chr 2:210,347,482...210,367,537
Ensembl chr 2:210,347,482...210,367,535
JBrowse link
G Glrx glutaredoxin IEP mRNA:decreased expression:heart: RGD PMID:18163565 RGD:2306160 NCBI chr 2:5,341,873...5,351,686
Ensembl chr 2:5,341,885...5,351,680
JBrowse link
G Gnpat glyceronephosphate O-acyltransferase IEP RGD PMID:1546971 RGD:2313672 NCBI chr19:52,822,326...52,848,872
Ensembl chr19:52,822,319...52,852,361
JBrowse link
G Hat1 histone acetyltransferase 1 IEP RGD PMID:17182829 RGD:2316578 NCBI chr 3:56,217,344...56,265,021
Ensembl chr 3:56,217,342...56,275,517
JBrowse link
G Havcr1 hepatitis A virus cellular receptor 1 IEP RGD PMID:18815216 RGD:2316595 NCBI chr10:31,118,667...31,151,730
Ensembl chr10:31,119,088...31,151,698
JBrowse link
G Hmgcl 3-hydroxy-3-methylglutaryl-CoA lyase IEP high-fat diet RGD PMID:5667251 RGD:2326171 NCBI chr 5:148,178,203...148,192,072
Ensembl chr 5:148,178,252...148,192,068
JBrowse link
G Hmgcr 3-hydroxy-3-methylglutaryl-CoA reductase IEP RGD PMID:16702306 RGD:2313754 NCBI chr 2:27,997,523...28,018,983
Ensembl chr 2:27,997,525...28,019,703
JBrowse link
G Hmgcs2 3-hydroxy-3-methylglutaryl-CoA synthase 2 IEP RGD PMID:17103110 RGD:1599890 NCBI chr 2:185,875,609...185,903,505
Ensembl chr 2:185,875,616...185,902,130
JBrowse link
G Hsf1 heat shock transcription factor 1 IEP RGD PMID:24465380 RGD:10402568 NCBI chr 7:108,196,040...108,223,011
Ensembl chr 7:108,196,056...108,223,011
JBrowse link
G Igf1 insulin-like growth factor 1 IEP RGD PMID:2383530 RGD:10046040 NCBI chr 7:22,282,895...22,361,972
Ensembl chr 7:22,282,930...22,359,296
JBrowse link
G Igfbp2 insulin-like growth factor binding protein 2 IEP RGD PMID:15576465 RGD:1626503 NCBI chr 9:74,415,574...74,442,945
Ensembl chr 9:74,415,546...74,442,937
JBrowse link
G Il1b interleukin 1 beta IEP RGD PMID:17437639 RGD:1626622 NCBI chr 3:116,577,005...116,583,386
Ensembl chr 3:116,577,010...116,583,415
JBrowse link
G Il4 interleukin 4 IEP RGD PMID:19608731 RGD:5128779 NCBI chr10:37,771,203...37,776,750
Ensembl chr10:37,771,203...37,776,750
JBrowse link
G Il6st interleukin 6 cytokine family signal transducer IEP RGD PMID:15371280 RGD:1627569 NCBI chr 2:44,065,979...44,106,255
Ensembl chr 2:44,066,130...44,109,936
JBrowse link
G Klk1 kallikrein 1 IEP RGD PMID:12489811 RGD:1641808 NCBI chr 1:94,642,722...94,646,714
Ensembl chr 1:94,642,687...94,646,754
JBrowse link
G Lct lactase IDA RGD PMID:16497337 RGD:1600244 NCBI chr13:39,781,929...39,824,456
Ensembl chr13:39,781,929...39,824,456
JBrowse link
G Ldha lactate dehydrogenase A IEP RGD PMID:15110778 RGD:1600272 NCBI chr 1:97,371,823...97,381,247
Ensembl chr 1:97,366,021...97,433,472
JBrowse link
G Lep leptin IEP protein:altered expression: serum RGD PMID:15616803 PMID:29089335 RGD:1581835, RGD:21410183 NCBI chr 4:57,661,127...57,675,262
Ensembl chr 4:57,661,131...57,675,262
JBrowse link
G Lepr leptin receptor IEP RGD PMID:18755573 RGD:5129092 NCBI chr 5:116,294,409...116,477,904
Ensembl chr 5:116,289,823...116,475,908
JBrowse link
G Lipg lipase G, endothelial type IEP RGD PMID:1935790 RGD:1641820 NCBI chr18:68,514,923...68,536,105
Ensembl chr18:68,514,923...68,536,260
JBrowse link
G Lta lymphotoxin alpha IEP RGD PMID:12122042 RGD:628312 NCBI chr20:3,618,853...3,621,324
Ensembl chr20:3,618,853...3,620,859
JBrowse link
G Mapt microtubule-associated protein tau IDA RGD PMID:16495207 RGD:1599923 NCBI chr10:89,138,644...89,236,137
Ensembl chr10:89,138,627...89,236,129
JBrowse link
G Mgp matrix Gla protein IEP RGD PMID:1757478 RGD:1582514 NCBI chr 4:169,766,290...169,769,612
Ensembl chr 4:169,766,279...169,769,667
JBrowse link
G Mmp9 matrix metallopeptidase 9 IEP RGD PMID:17650800 RGD:1642032 NCBI chr 3:153,684,158...153,692,118
Ensembl chr 3:153,683,858...153,692,120
JBrowse link
G Mt-cyb mitochondrially encoded cytochrome b IEP RGD PMID:5954822 RGD:2298983 NCBI chr MT:14,136...15,278
Ensembl chr MT:14,136...15,278
JBrowse link
G Mtor mechanistic target of rapamycin kinase involved_in ISO (PMID:17028174) RGD PMID:17028174 NCBI chr 5:158,884,856...158,994,311
Ensembl chr 5:158,884,804...158,994,311
JBrowse link
G Nod2 nucleotide-binding oligomerization domain containing 2 IEP RGD PMID:21057821 RGD:5131436 NCBI chr19:18,379,720...18,422,817
Ensembl chr19:18,382,439...18,417,177
JBrowse link
G Nqo1 NAD(P)H quinone dehydrogenase 1 IEP RGD PMID:21092375 RGD:5133236 NCBI chr19:35,295,633...35,310,528
Ensembl chr19:35,295,573...35,310,557
JBrowse link
G Oxct1 3-oxoacid CoA transferase 1 IEP RGD PMID:20025965 RGD:2326188 NCBI chr 2:53,236,370...53,384,715
Ensembl chr 2:53,236,368...53,384,714
JBrowse link
G Pemt phosphatidylethanolamine N-methyltransferase IEP RGD PMID:9566595 RGD:1642373 NCBI chr10:44,775,910...44,849,990
Ensembl chr10:44,775,911...44,850,013
JBrowse link
G Pik3r1 phosphoinositide-3-kinase regulatory subunit 1 IEP soybean diet
high-fat diet
RGD PMID:19880292 PMID:19657097 RGD:4107735, RGD:4108477 NCBI chr 2:32,878,942...32,963,611
Ensembl chr 2:32,882,032...32,963,631
JBrowse link
G Pklr pyruvate kinase L/R IEP RGD PMID:11368649 RGD:1625592 NCBI chr 2:174,543,008...174,551,863
Ensembl chr 2:174,543,039...174,551,870
JBrowse link
G Pkm pyruvate kinase M1/2 IEP RGD PMID:7929251 RGD:2303136 NCBI chr 8:60,057,629...60,079,600
Ensembl chr 8:60,057,402...60,079,599
JBrowse link
G Plec plectin IDA RGD PMID:12095991 RGD:729534 NCBI chr 7:107,887,764...107,949,100
Ensembl chr 7:107,887,764...107,945,467
JBrowse link
G Por cytochrome p450 oxidoreductase IEP low protein diet RGD PMID:17392395 RGD:4889828 NCBI chr12:20,951,058...20,999,198
Ensembl chr12:20,951,058...20,999,245
JBrowse link
G Prl prolactin IEP RGD PMID:17447162 RGD:1642572 NCBI chr17:37,859,999...37,870,062
Ensembl chr17:37,860,007...37,870,062
JBrowse link
G Prss1 serine protease 1 IEP RGD PMID:2363685 RGD:1599973 NCBI chr 4:70,364,589...70,367,792
Ensembl chr 4:70,364,586...70,367,792
JBrowse link
G Prss2 protease, serine, 2 IEP RGD PMID:2363685 RGD:1599973 NCBI chr 4:70,278,304...70,283,385
Ensembl chr 4:70,278,304...70,283,385
JBrowse link
G Pten phosphatase and tensin homolog IEP RGD PMID:17166883 RGD:2292540 NCBI chr 1:230,631,303...230,696,754
Ensembl chr 1:230,630,338...230,696,838
JBrowse link
G Rps6kb1 ribosomal protein S6 kinase B1 IEP RGD PMID:10913029 RGD:1642983 NCBI chr10:71,323,777...71,367,908
Ensembl chr10:71,323,777...71,367,908
JBrowse link
G Rxra retinoid X receptor alpha IEP RGD PMID:14986719 RGD:1643116 NCBI chr 3:10,989,832...11,076,366
Ensembl chr 3:10,989,832...11,073,712
JBrowse link
G Ryr2 ryanodine receptor 2 IEP RGD PMID:17224993 RGD:1599246 NCBI chr17:58,389,925...58,975,641
Ensembl chr17:58,389,925...58,975,142
JBrowse link
G Serpinc1 serpin family C member 1 IDA RGD PMID:17123684 RGD:1599322 NCBI chr13:73,257,208...73,271,476
Ensembl chr13:73,257,179...73,284,293
JBrowse link
G Sfrp2 secreted frizzled-related protein 2 IEP RGD PMID:17341692 RGD:4107716 NCBI chr 2:169,089,517...169,097,064
Ensembl chr 2:169,089,517...169,097,063
JBrowse link
G Shank2 SH3 and multiple ankyrin repeat domains 2 IEP dietary phosphate RGD PMID:15917299 RGD:7243142 NCBI chr 1:199,146,210...199,590,962
Ensembl chr 1:199,169,429...199,589,394
JBrowse link
G Si sucrase-isomaltase IEP RGD PMID:7873573 RGD:1625555 NCBI chr 2:157,505,893...157,586,228
Ensembl chr 2:157,506,342...157,585,260
JBrowse link
G Slc27a4 solute carrier family 27 member 4 involved_in IEP
IBA
PMID:21873635 RGD
GO_Central
PMID:17638014 PMID:21873635 RGD:2312797, RGD:13792537 NCBI chr 3:13,075,022...13,087,943
Ensembl chr 3:13,075,022...13,087,943
JBrowse link
G Slc34a1 solute carrier family 34 member 1 IEP dietary phosphate RGD PMID:10027934 RGD:7243095 NCBI chr17:9,218,876...9,233,852
Ensembl chr17:9,218,876...9,233,852
JBrowse link
G Slc37a4 solute carrier family 37 member 4 IEP RGD PMID:2996302 RGD:1625652 NCBI chr 8:44,723,216...44,729,301
Ensembl chr 8:44,723,339...44,729,301
JBrowse link
G Slc6a19 solute carrier family 6 member 19 IEP RGD PMID:17264310 RGD:1600036 NCBI chr 1:29,586,205...29,604,960
Ensembl chr 1:29,586,195...29,604,962
JBrowse link
G Slc6a4 solute carrier family 6 member 4 IEP RGD PMID:21068163 RGD:4889469 NCBI chr10:61,824,208...61,858,924
Ensembl chr10:61,826,123...61,858,384
JBrowse link
G Slc8a1 solute carrier family 8 member A1 IEP RGD PMID:17612656 RGD:1642718 NCBI chr 6:13,194,609...13,547,369
Ensembl chr 6:13,194,662...13,535,628
JBrowse link
G Soat2 sterol O-acyltransferase 2 IEP RGD PMID:12563020 RGD:1598705 NCBI chr 7:133,281,818...133,294,915
Ensembl chr 7:133,281,818...133,294,915
JBrowse link
G Star steroidogenic acute regulatory protein IEP RGD PMID:16882930 RGD:1600074 NCBI chr16:66,267,094...66,274,368
Ensembl chr16:66,264,807...66,271,672
JBrowse link
G Stat1 signal transducer and activator of transcription 1 IDA RGD PMID:15454281 RGD:1600101 NCBI chr 9:49,419,561...49,459,969
Ensembl chr 9:49,419,340...49,588,540
JBrowse link
G Suox sulfite oxidase IDA RGD PMID:3404287 RGD:1600116 NCBI chr 7:1,103,149...1,107,156
Ensembl chr 7:1,103,151...1,107,038
JBrowse link
G Tbxa2r thromboxane A2 receptor IEP RGD PMID:14621185 RGD:1601435 NCBI chr 7:8,383,347...8,390,753
Ensembl chr 7:8,383,378...8,388,176
JBrowse link
G Tfrc transferrin receptor IEP RGD PMID:18340409 RGD:2292029 NCBI chr11:68,163,413...68,185,257
Ensembl chr11:68,163,413...68,185,257
JBrowse link
G Tgfbr2 transforming growth factor, beta receptor 2 IEP RGD PMID:11675406 RGD:1601602 NCBI chr 8:115,794,537...115,883,615
Ensembl chr 8:115,794,537...115,883,228
JBrowse link
G Tnfrsf11b TNF receptor superfamily member 11B IEP RGD PMID:16696921 RGD:1624172 NCBI chr 7:85,566,520...85,594,526
Ensembl chr 7:85,566,520...85,594,538
JBrowse link
G Ttpa alpha tocopherol transfer protein IEP RGD PMID:9868180 RGD:1600433 NCBI chr 5:33,497,537...33,518,936
Ensembl chr 5:33,497,137...33,518,073
JBrowse link
G Txn2 thioredoxin 2 IEP Brassica oleracea RGD PMID:18163565 RGD:2306160 NCBI chr 7:109,496,772...109,510,378
Ensembl chr 7:109,496,761...109,510,359
JBrowse link
G Ucp3 uncoupling protein 3 IEP RGD PMID:16962595 RGD:2313536 NCBI chr 1:154,815,777...154,828,764
Ensembl chr 1:154,815,777...154,828,762
JBrowse link
G Ugt1a1 UDP glucuronosyltransferase family 1 member A1 IEP RGD PMID:11299074 RGD:1600448 NCBI chr 9:88,801,344...88,808,465
Ensembl chr 9:88,713,184...88,808,465
JBrowse link
G Vcam1 vascular cell adhesion molecule 1 IEP RGD PMID:19199090 RGD:2313106 NCBI chr 2:204,038,120...204,057,852
Ensembl chr 2:204,038,114...204,057,958
JBrowse link
G Vldlr very low density lipoprotein receptor IEP RGD PMID:11882325 RGD:1625576 NCBI chr 1:224,813,539...224,850,400
Ensembl chr 1:224,814,377...224,845,920
JBrowse link
behavioral response to nutrient term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Slc16a1 solute carrier family 16 member 1 involved_in ISO (MGI:5545659|PMID:24367518) RGD PMID:24367518 MGI:5545659 NCBI chr 2:192,123,755...192,144,617
Ensembl chr 2:192,124,289...192,144,611
JBrowse link
cellular response to folic acid term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Folr1 folate receptor alpha involved_in ISO (PMID:14722620) RGD PMID:14722620 NCBI chr 1:156,219,460...156,238,436
Ensembl chr 1:156,219,460...156,230,667
JBrowse link
G Folr2 folate receptor beta involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 1:156,200,044...156,218,380
Ensembl chr 1:156,200,060...156,205,724
JBrowse link
cellular response to L-ascorbic acid term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Eln elastin IEP RGD PMID:2859894 RGD:9585689 NCBI chr12:21,968,544...22,011,929
Ensembl chr12:21,968,544...22,011,928
JBrowse link
G Lep leptin IEP RGD PMID:20400526 RGD:5128594 NCBI chr 4:57,661,127...57,675,262
Ensembl chr 4:57,661,131...57,675,262
JBrowse link
cellular response to menadione term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dcps decapping enzyme, scavenger involved_in IEA
ISO
ISS
GO_REF:0000107
(PMID:16140270)
GO_REF:0000024
Ensembl
RGD
UniProt
PMID:16140270 GO_REF:0000024 GO_REF:0000107 NCBI chr 8:33,468,669...33,524,407
Ensembl chr 8:33,415,671...33,524,389
JBrowse link
G Ndor1 NADPH dependent diflavin oxidoreductase 1 involved_in ISO (PMID:16140270) RGD PMID:16140270 NCBI chr 3:8,062,629...8,070,873
Ensembl chr 3:8,062,630...8,070,860
JBrowse link
cellular response to methionine term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mtr 5-methyltetrahydrofolate-homocysteine methyltransferase IEP RGD PMID:1201245 RGD:6893692 NCBI chr17:58,219,998...58,308,560
Ensembl chr17:58,220,071...58,304,822
JBrowse link
cellular response to nutrient term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acat2 acetyl-CoA acetyltransferase 2 IEP N-acetylcysteine RGD PMID:12563020 RGD:1598705 NCBI chr 1:47,695,833...47,713,879
Ensembl chr 1:47,695,788...47,752,821
JBrowse link
G Ccne1 cyclin E1 IEP RGD PMID:17979132 RGD:2289272 NCBI chr 1:90,781,947...90,791,188
Ensembl chr 1:90,781,949...90,791,101
JBrowse link
G Cdkn2b cyclin-dependent kinase inhibitor 2B involved_in IEA
ISO
GO_REF:0000107
(PMID:17597576)
Ensembl
RGD
PMID:17597576 GO_REF:0000107 NCBI chr 5:104,009,839...104,019,082
Ensembl chr 5:104,010,680...104,019,050
JBrowse link
G Cyp11b2 cytochrome P450, family 11, subfamily b, polypeptide 2 IEP potassium RGD PMID:16876110 RGD:4891413 NCBI chr 7:106,838,590...106,845,004
Ensembl chr 7:106,838,590...106,845,004
JBrowse link
G Dbi diazepam binding inhibitor, acyl-CoA binding protein IEP RGD PMID:15825833 RGD:2316268 NCBI chr13:31,241,466...31,249,853
Ensembl chr13:31,206,988...31,268,693
JBrowse link
G Hmox1 heme oxygenase 1 IEP RGD PMID:15531134 RGD:1582714 NCBI chr19:13,466,287...13,474,082
Ensembl chr19:13,467,244...13,474,079
JBrowse link
G Lpl lipoprotein lipase involved_in ISO (MGI:6282942|PMID:21986524) RGD PMID:21986524 MGI:6282942 NCBI chr16:20,830,055...20,853,855
Ensembl chr16:20,829,465...20,855,249
JBrowse link
G Pdk2 pyruvate dehydrogenase kinase 2 involved_in ISS
ISO
IEA
GO_REF:0000024
(MGI:5428826|PMID:22360721)
GO_REF:0000107
UniProt
RGD
Ensembl
PMID:22360721 GO_REF:0000024 GO_REF:0000107 MGI:5428826 NCBI chr10:79,972,550...79,987,074
Ensembl chr10:79,972,556...79,987,085
JBrowse link
G Prdm4 PR/SET domain 4 IEP fetal calf serum RGD PMID:10485890 RGD:633619 NCBI chr 7:17,953,832...17,980,489
Ensembl chr 7:17,954,019...17,980,489
JBrowse link
G Scd4 stearoyl-coenzyme A desaturase 4 involved_in ISO (MGI:2673743|PMID:12815040) RGD PMID:12815040 MGI:2673743 NCBI chr 1:243,203,433...243,216,007
Ensembl chr 1:243,203,881...243,215,148
JBrowse link
G Tnks tankyrase IEP RGD PMID:25876076 RGD:13628743 NCBI chr16:57,223,174...57,370,740
Ensembl chr16:57,225,094...57,366,260
JBrowse link
G Xbp1 X-box binding protein 1 involved_in ISO (MGI:4442277|PMID:20348926) RGD PMID:20348926 MGI:4442277 NCBI chr14:80,390,629...80,395,713
Ensembl chr14:80,390,643...80,395,693
JBrowse link
cellular response to vitamin term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Brip1 BRCA1 interacting helicase 1 IEP RGD PMID:16771696 RGD:2326085 NCBI chr10:70,907,266...71,031,502
Ensembl chr10:70,907,371...71,030,324
JBrowse link
cellular response to vitamin A term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ltc4s leukotriene C4 synthase IEP RGD PMID:12767051 RGD:724432 NCBI chr10:34,560,476...34,562,790
Ensembl chr10:34,560,360...34,562,651
JBrowse link
cellular response to vitamin B1 term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mdm2 MDM2 proto-oncogene IEP RGD PMID:15656374 RGD:2317394 NCBI chr 7:53,290,660...53,315,205
Ensembl chr 7:53,290,664...53,314,915
JBrowse link
cellular response to vitamin B3 term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Sirt1 sirtuin 1 IEP RGD PMID:23555824 RGD:10047117 NCBI chr20:25,307,143...25,329,260
Ensembl chr20:25,306,917...25,329,260
JBrowse link
cellular response to vitamin D term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adamts1 ADAM metallopeptidase with thrombospondin type 1 motif, 1 IEP RGD PMID:11108265 RGD:9681746 NCBI chr11:24,932,227...24,941,068
Ensembl chr11:24,931,761...24,941,103
JBrowse link
G Atp2b1 ATPase plasma membrane Ca2+ transporting 1 IEP RGD PMID:11277270 RGD:2317730 NCBI chr 7:33,735,595...33,845,226
Ensembl chr 7:33,735,871...33,843,295
JBrowse link
G Bglap bone gamma-carboxyglutamate protein IEP RGD PMID:6607920 PMID:3257212 RGD:2316174, RGD:6483560 NCBI chr 2:173,838,518...173,839,495
Ensembl chr 2:173,838,518...173,839,495
JBrowse link
G Casr calcium-sensing receptor IEP 1,25-dihydroxycholecalciferol (calcitriol) RGD PMID:21940515 RGD:7205697 NCBI chr11:64,235,251...64,304,811
Ensembl chr11:64,235,251...64,304,811
JBrowse link
G Fes FES proto-oncogene, tyrosine kinase involved_in ISO (PMID:28389358) RGD PMID:28389358 NCBI chr 1:134,337,698...134,346,934
Ensembl chr 1:134,337,698...134,346,934
JBrowse link
G Fgf23 fibroblast growth factor 23 IEP RGD PMID:23263654 RGD:10044209 NCBI chr 4:159,914,393...159,922,073
Ensembl chr 4:159,914,272...159,923,821
JBrowse link
G Fzd1 frizzled class receptor 1 IEP RGD PMID:1334084 RGD:61590 NCBI chr 4:29,310,303...29,314,701 JBrowse link
G Fzd2 frizzled class receptor 2 IEP RGD PMID:1334084 RGD:61590 NCBI chr10:87,561,866...87,563,776
Ensembl chr10:87,561,326...87,565,334
JBrowse link
G Gdap1 ganglioside-induced differentiation-associated-protein 1 IEP RGD PMID:25449168 RGD:12738378 NCBI chr 5:1,932,613...1,951,691
Ensembl chr 5:1,932,613...2,030,061
JBrowse link
G Il15 interleukin 15 IEP RGD PMID:15637289 RGD:2311387 NCBI chr19:25,640,013...25,706,818
Ensembl chr19:25,640,251...25,706,820
JBrowse link
G Itgb1 integrin subunit beta 1 IEP calcitriol RGD PMID:20304064 RGD:2325261 NCBI chr19:56,705,123...56,753,199
Ensembl chr19:56,705,171...56,753,195
JBrowse link
G Ltbp1 latent transforming growth factor beta binding protein 1 IEP RGD PMID:10025676 RGD:10412059 NCBI chr 6:20,029,629...20,425,339
Ensembl chr 6:20,029,629...20,425,349
JBrowse link
G Mmp1 matrix metallopeptidase 1 IEP RGD PMID:22064970 RGD:7207281 NCBI chr 8:4,658,588...4,679,099
Ensembl chr 8:4,658,588...4,679,097
JBrowse link
G Nos2 nitric oxide synthase 2 IEP RGD PMID:18534083 RGD:4891908 NCBI chr10:63,815,308...63,851,208
Ensembl chr10:63,815,308...63,851,210
JBrowse link
G Pdia3 protein disulfide isomerase family A, member 3 IDA RGD PMID:15862831 RGD:9999173 NCBI chr 3:108,388,189...108,412,013
Ensembl chr 3:108,388,245...108,413,236
JBrowse link
G Penk proenkephalin IEP RGD PMID:8584038 RGD:10003035 NCBI chr 5:17,183,799...17,189,160
Ensembl chr 5:17,183,806...17,189,129
JBrowse link
G Phex phosphate regulating endopeptidase homolog, X-linked IEP RGD PMID:15337762 RGD:11556251 NCBI chr  X:37,607,553...37,856,183
Ensembl chr  X:37,610,760...37,854,469
JBrowse link
G Ptn pleiotrophin IEP RGD PMID:21153232 RGD:9831436 NCBI chr 4:65,293,731...65,375,572
Ensembl chr 4:65,293,734...65,375,456
JBrowse link
G Sfrp1 secreted frizzled-related protein 1 involved_in ISO
IEA
(PMID:16149051)
GO_REF:0000107
RGD
Ensembl
PMID:16149051 GO_REF:0000107 NCBI chr16:68,575,763...68,613,905
Ensembl chr16:68,575,763...68,614,286
JBrowse link
G Sult2a1 sulfotransferase family 2A member 1 IDA RGD PMID:14978251 RGD:2317006 NCBI chr 1:75,451,178...75,508,142
Ensembl chr 1:74,911,100...75,508,134
JBrowse link
G Tnc tenascin C IEP RGD PMID:10502285 RGD:4889620 NCBI chr 5:77,375,851...77,460,712
Ensembl chr 5:77,375,851...77,460,624
JBrowse link
G Trem1 triggering receptor expressed on myeloid cells 1 IEP RGD PMID:29331667 RGD:127284861 NCBI chr 9:12,763,819...12,779,285
Ensembl chr 9:12,763,819...12,779,203
JBrowse link
G Vdr vitamin D receptor IEP RGD PMID:9753201 RGD:8158092 NCBI chr 7:128,987,981...129,037,677
Ensembl chr 7:128,987,981...129,037,677
JBrowse link
cellular response to vitamin E term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Col1a1 collagen type I alpha 1 chain IEP RGD PMID:23722449 RGD:8552711 NCBI chr10:79,883,622...79,900,625
Ensembl chr10:79,883,622...79,900,624
JBrowse link
G Col2a1 collagen type II alpha 1 chain IEP RGD PMID:23722449 RGD:8552711 NCBI chr 7:129,098,489...129,127,620
Ensembl chr 7:129,098,786...129,127,546
JBrowse link
G Pawr pro-apoptotic WT1 regulator IEP RGD PMID:10428045 RGD:9835341 NCBI chr 7:43,645,028...43,725,033
Ensembl chr 7:43,645,084...43,725,028
JBrowse link
G Pparg peroxisome proliferator-activated receptor gamma IEP RGD PMID:11752099 RGD:8553036 NCBI chr 4:148,423,102...148,548,471
Ensembl chr 4:148,423,194...148,548,468
JBrowse link
cellular response to vitamin K term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ccl5 C-C motif chemokine ligand 5 IEP menadione (K3) RGD PMID:19291322 RGD:4889997 NCBI chr10:68,322,826...68,327,365
Ensembl chr10:68,322,829...68,327,377
JBrowse link
G Gas6 growth arrest specific 6 involved_in ISO
ISS
(PMID:16359517)
GO_REF:0000024
RGD
UniProt
PMID:16359517 GO_REF:0000024 NCBI chr16:76,045,430...76,075,904
Ensembl chr16:76,045,426...76,075,904
JBrowse link
G Postn periostin involved_in ISO (PMID:18450759)
(MGI:3804342|PMID:18450759)
RGD PMID:18450759 MGI:3804342 NCBI chr 2:138,527,714...138,559,098
Ensembl chr 2:138,527,696...138,559,099
JBrowse link
negative regulation of transcription from RNA polymerase II promoter by glucose term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Foxa2 forkhead box A2 involved_in ISO (MGI:5142372|PMID:11875061) RGD PMID:11875061 MGI:5142372 NCBI chr 3:135,470,123...135,474,326
Ensembl chr 3:135,470,131...135,474,326
JBrowse link
negative regulation of vitamin D receptor signaling pathway term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Kank2 KN motif and ankyrin repeat domains 2 involved_in IBA
IEA
ISO
PMID:21873635
GO_REF:0000107
(PMID:24671081)
Ensembl
RGD
PMID:24671081 PMID:21873635 GO_REF:0000107, RGD:13792537 NCBI chr 8:20,311,676...20,341,107
Ensembl chr 8:20,311,676...20,340,900
JBrowse link
G Snai2 snail family transcriptional repressor 2 involved_in ISO (PMID:19502595) RGD PMID:19502595 NCBI chr11:86,183,800...86,186,109
Ensembl chr11:86,181,909...86,186,200
JBrowse link
positive regulation of transcription by glucose term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Srf serum response factor IMP RGD PMID:20655308 RGD:5131625 NCBI chr 9:14,426,453...14,435,734
Ensembl chr 9:14,426,472...14,435,733
JBrowse link
positive regulation of transcription from RNA polymerase II promoter by galactose term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ncoa1 nuclear receptor coactivator 1 involved_in ISO (PMID:10207113)
(MGI:5297786|PMID:16723356)
RGD PMID:10207113 PMID:16723356 MGI:5297786 NCBI chr 6:27,232,609...27,507,992
Ensembl chr 6:27,232,611...27,475,664
JBrowse link
positive regulation of transcription from RNA polymerase II promoter by glucose term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Foxa2 forkhead box A2 involved_in ISO (MGI:5142372|PMID:11875061) RGD PMID:11875061 MGI:5142372 NCBI chr 3:135,470,123...135,474,326
Ensembl chr 3:135,470,131...135,474,326
JBrowse link
G Usf1 upstream transcription factor 1 involved_in ISO (PMID:7852331)
(MGI:1330677|PMID:9890958)
RGD PMID:7852331 PMID:9890958 MGI:1330677 NCBI chr13:83,845,230...83,854,875
Ensembl chr13:83,822,035...83,854,885
JBrowse link
G Usf2 upstream transcription factor 2, c-fos interacting involved_in ISO
IEA
(PMID:7852331)
GO_REF:0000107
(MGI:1330677|PMID:9890958)
RGD
Ensembl
PMID:7852331 PMID:9890958 GO_REF:0000107 MGI:1330677 NCBI chr 1:86,174,703...86,185,942
Ensembl chr 1:86,174,703...86,185,617
JBrowse link
positive regulation of vitamin D receptor signaling pathway term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cyp27b1 cytochrome P450, family 27, subfamily b, polypeptide 1 involved_in ISO
IEA
(PMID:16549446)
GO_REF:0000107
RGD
Ensembl
PMID:16549446 GO_REF:0000107 NCBI chr 7:62,869,340...62,876,242
Ensembl chr 7:62,871,297...62,876,241
JBrowse link
G Mn1 MN1 proto-oncogene, transcriptional regulator involved_in ISO (PMID:15890672) RGD PMID:15890672 NCBI chr12:45,184,060...45,220,102
Ensembl chr12:45,183,085...45,221,651
JBrowse link
G Rxra retinoid X receptor alpha involved_in ISO (PMID:20171278) RGD PMID:20171278 NCBI chr 3:10,989,832...11,076,366
Ensembl chr 3:10,989,832...11,073,712
JBrowse link
G Snw1 SNW domain containing 1 involved_in ISO (PMID:11514567), (PMID:9632709) RGD PMID:9632709 PMID:11514567 NCBI chr 6:107,095,450...107,119,536
Ensembl chr 6:107,095,457...107,119,536
JBrowse link
G Vdr vitamin D receptor involved_in ISO
IEA
(PMID:20171278)
GO_REF:0000107
RGD
Ensembl
PMID:20171278 GO_REF:0000107 NCBI chr 7:128,987,981...129,037,677
Ensembl chr 7:128,987,981...129,037,677
JBrowse link
regulation of vitamin D receptor signaling pathway term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Med1 mediator complex subunit 1 acts_upstream_of_or_within ISO MGI:1861125 (MGI:3655015|PMID:16324150) RGD PMID:16324150 MGI:3655015 NCBI chr10:83,145,538...83,189,260
Ensembl chr10:83,145,568...83,189,299
JBrowse link
G Snw1 SNW domain containing 1 involved_in ISO (PMID:14985122) RGD PMID:14985122 NCBI chr 6:107,095,450...107,119,536
Ensembl chr 6:107,095,457...107,119,536
JBrowse link
G Trim24 tripartite motif-containing 24 acts_upstream_of_or_within ISO MGI:3772051 (MGI:3776949|PMID:18287084) RGD PMID:18287084 MGI:3776949 NCBI chr 4:66,664,864...66,717,244
Ensembl chr 4:66,566,686...66,717,241
JBrowse link
response to biotin term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hlcs holocarboxylase synthetase involved_in IEP
ISO
(PMID:17904341) RGD PMID:17904341 PMID:16359899 RGD:2313678 NCBI chr11:33,455,806...33,635,197
Ensembl chr11:33,455,809...33,624,222
JBrowse link
G Otc ornithine transcarbamylase IEP RGD PMID:8558326 RGD:4144076 NCBI chr  X:12,453,834...12,529,954
Ensembl chr  X:12,453,834...12,566,918
JBrowse link
response to cobalamin term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cd40 CD40 molecule IEP RGD PMID:16716410 RGD:2313422 NCBI chr 3:153,790,372...153,805,279
Ensembl chr 3:153,790,449...153,805,534
JBrowse link
G Cd40lg CD40 ligand IEP RGD PMID:16716410 RGD:2313422 NCBI chr  X:135,127,119...135,138,302
Ensembl chr  X:135,126,969...135,138,306
JBrowse link
G Egfr epidermal growth factor receptor IEP RGD PMID:21185268 RGD:5131503 NCBI chr14:91,176,931...91,349,722
Ensembl chr14:91,177,067...91,344,382
JBrowse link
G Hp haptoglobin IEP RGD PMID:12769818 RGD:1643101 NCBI chr19:37,539,626...37,544,178
Ensembl chr19:37,539,627...37,544,523
JBrowse link
G Mt-cyb mitochondrially encoded cytochrome b IEP RGD PMID:7508436 RGD:2298965 NCBI chr MT:14,136...15,278
Ensembl chr MT:14,136...15,278
JBrowse link
G Rela RELA proto-oncogene, NF-kB subunit IEP RGD PMID:18183619 RGD:2298839 NCBI chr 1:202,925,001...202,935,484
Ensembl chr 1:202,924,945...202,935,484
JBrowse link
G Sds serine dehydratase IEP RGD PMID:17761010 RGD:2311256 NCBI chr12:36,083,226...36,090,540
Ensembl chr12:36,083,229...36,088,203
JBrowse link
response to folic acid term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abcg2 ATP binding cassette subfamily G member 2 IEP RGD PMID:19552531 RGD:2316102 NCBI chr 4:87,676,241...87,802,757
Ensembl chr 4:87,745,319...87,802,409
JBrowse link
G Ascl1 achaete-scute family bHLH transcription factor 1 IEP RGD PMID:19001765 RGD:2314143 NCBI chr 7:21,904,153...21,906,003
Ensembl chr 7:21,903,126...21,905,993
JBrowse link
G Bche butyrylcholinesterase IDA RGD PMID:16442260 RGD:1599454 NCBI chr 2:158,308,674...158,401,148
Ensembl chr 2:158,307,584...158,401,148
JBrowse link
G Bcl2 BCL2, apoptosis regulator IEP RGD PMID:18156304 RGD:2290422 NCBI chr13:22,689,783...22,853,920 JBrowse link
G Cbs cystathionine beta synthase acts_upstream_of_or_within ISO MGI:1857139 (MGI:1890086|PMID:10993757) RGD PMID:10993757 MGI:1890086 NCBI chr20:9,708,089...9,732,623
Ensembl chr20:9,708,090...9,732,764
JBrowse link
G Eef2 eukaryotic translation elongation factor 2 IEP RGD PMID:12899944 RGD:1599867 NCBI chr 7:8,533,248...8,538,518
Ensembl chr 7:8,533,116...8,559,183
JBrowse link
G Gpx1 glutathione peroxidase 1 IEP RGD PMID:16251605 RGD:2306623 NCBI chr 8:109,026,905...109,028,031
Ensembl chr 8:109,026,905...109,028,024
JBrowse link
G Gsn gelsolin IEP RGD PMID:12899944 RGD:1599867 NCBI chr 3:18,585,166...18,638,404
Ensembl chr 3:18,585,172...18,638,402
JBrowse link
G Hspa9 heat shock protein family A (Hsp70) member 9 IEP RGD PMID:16251605 RGD:2306623 NCBI chr18:26,536,131...26,554,294
Ensembl chr18:26,535,798...26,554,292
JBrowse link
G Lrp6 LDL receptor related protein 6 acts_upstream_of_or_within ISO MGI:1861309 (MGI:3697543|PMID:17050573) RGD PMID:17050573 MGI:3697543 NCBI chr 4:167,266,581...167,400,155
Ensembl chr 4:167,270,353...167,400,497
JBrowse link
G Mgmt O-6-methylguanine-DNA methyltransferase IEP RGD PMID:20051376 RGD:2316897 NCBI chr 1:191,710,980...191,937,760
Ensembl chr 1:191,710,930...191,937,756
JBrowse link
G Mog myelin oligodendrocyte glycoprotein IEP RGD PMID:20090312 RGD:9685541 NCBI chr20:1,513,137...1,523,473
Ensembl chr20:1,513,239...1,523,474
JBrowse link
G Mthfr methylenetetrahydrofolate reductase IEP RGD PMID:15313378 RGD:6893667 NCBI chr 5:158,465,248...158,484,999
Ensembl chr 5:158,465,296...158,483,797
JBrowse link
G Nrf1 nuclear respiratory factor 1 IEP RGD PMID:17709439 RGD:2302403 NCBI chr 4:58,664,932...58,772,328
Ensembl chr 4:58,664,957...58,825,328
JBrowse link
G Ogg1 8-oxoguanine DNA glycosylase IEP RGD PMID:20051376 RGD:2316897 NCBI chr 4:146,474,701...146,481,959
Ensembl chr 4:146,474,750...146,484,766
JBrowse link
G Timp3 TIMP metallopeptidase inhibitor 3 IEP RGD PMID:18156304 RGD:2290422 NCBI chr 7:17,520,827...17,571,871
Ensembl chr 7:17,521,919...17,571,839
JBrowse link
G Tyms thymidylate synthetase IEP RGD PMID:9528665 RGD:5133428 NCBI chr 9:113,313,454...113,329,551
Ensembl chr 9:113,313,452...113,329,536
JBrowse link
G Vegfa vascular endothelial growth factor A IEP RGD PMID:17482424 RGD:7421601 NCBI chr 9:14,955,300...14,970,641
Ensembl chr 9:14,955,300...14,970,641
JBrowse link
G Zfp354a zinc finger protein 354A IEP RGD PMID:8382778 RGD:1300202 NCBI chr10:35,396,242...35,408,065
Ensembl chr10:35,396,231...35,408,068
JBrowse link
response to L-ascorbic acid term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acp5 acid phosphatase 5, tartrate resistant IEP RGD PMID:19110235 RGD:2315908 NCBI chr 8:20,663,984...20,670,604
Ensembl chr 8:20,663,985...20,667,929
JBrowse link
G Bcl2 BCL2, apoptosis regulator IEP RGD PMID:18758938 RGD:2311242 NCBI chr13:22,689,783...22,853,920 JBrowse link
G Cat catalase IEP RGD PMID:20698742 RGD:9068891 NCBI chr 3:89,842,393...89,874,577
Ensembl chr 3:89,842,399...89,874,478
JBrowse link
G Cyp11a1 cytochrome P450, family 11, subfamily a, polypeptide 1 IEP in PCB-treated rats RGD PMID:17280759 RGD:4891016 NCBI chr 8:58,422,807...58,434,342
Ensembl chr 8:58,404,669...58,434,338
JBrowse link
G Enpp1 ectonucleotide pyrophosphatase/phosphodiesterase 1 involved_in ISO MGI:2385534 (MGI:5297629|PMID:21930712) RGD PMID:21930712 MGI:5297629 NCBI chr 1:20,698,746...20,763,741
Ensembl chr 1:20,698,764...20,763,715
JBrowse link
G Gstp1 glutathione S-transferase pi 1 IEP RGD PMID:9834927 RGD:2317836 NCBI chr 1:201,337,762...201,340,230
Ensembl chr 1:201,321,672...201,340,226
JBrowse link
G Hp haptoglobin IEP RGD PMID:9566989 RGD:1643102 NCBI chr19:37,539,626...37,544,178
Ensembl chr19:37,539,627...37,544,523
JBrowse link
G Hsd17b3 hydroxysteroid (17-beta) dehydrogenase 3 IEP in PCB-treated rats RGD PMID:17280759 RGD:4891016 NCBI chr17:1,027,229...1,058,554
Ensembl chr17:1,027,229...1,058,554
JBrowse link
G Hsd3b1 hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 1 IEP in PCB-treated rats RGD PMID:17280759 RGD:4891016 NCBI chr 2:186,169,864...186,175,984
Ensembl chr 2:186,169,863...186,175,999
JBrowse link
G Il1a interleukin 1 alpha IEP RGD PMID:18983910 RGD:2311086 NCBI chr 3:116,526,601...116,537,055
Ensembl chr 3:116,526,604...116,536,822
JBrowse link
G Il1b interleukin 1 beta IEP RGD PMID:18983910 RGD:2311086 NCBI chr 3:116,577,005...116,583,386
Ensembl chr 3:116,577,010...116,583,415
JBrowse link
G Itga2 integrin subunit alpha 2 IEP RGD PMID:9275042 RGD:2307414 NCBI chr 2:46,520,345...46,621,487
Ensembl chr 2:46,523,948...46,621,481
JBrowse link
G Runx2 RUNX family transcription factor 2 involved_in ISO MGI:2385534 (MGI:5297629|PMID:21930712) RGD PMID:21930712 MGI:5297629 NCBI chr 9:16,167,504...16,492,826
Ensembl chr 9:16,167,482...16,492,167
JBrowse link
G Sod2 superoxide dismutase 2 IEP RGD PMID:20122981 RGD:2317376 NCBI chr 1:47,638,318...47,645,163
Ensembl chr 1:47,636,528...47,645,189
JBrowse link
G Sparc secreted protein acidic and cysteine rich IEP RGD PMID:9495521 RGD:2300067 NCBI chr10:39,516,394...39,538,252
Ensembl chr10:39,516,406...39,538,396
JBrowse link
G Vwf von Willebrand factor IEP RGD PMID:14737039 RGD:1601646 NCBI chr 4:158,360,152...158,491,539
Ensembl chr 4:158,360,152...158,491,539
JBrowse link
response to menaquinone term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mif macrophage migration inhibitory factor IEP RGD PMID:15856362 RGD:1641992 NCBI chr20:12,790,919...12,791,784
Ensembl chr20:12,790,902...12,799,504
JBrowse link
response to vitamin term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Alad aminolevulinate dehydratase IEP vitamin C RGD PMID:9559098 RGD:4144791 NCBI chr 5:75,961,993...75,972,334
Ensembl chr 5:75,961,993...75,972,474
JBrowse link
G Hmbs hydroxymethylbilane synthase IEP vitamin C RGD PMID:9559098 RGD:4144791 NCBI chr 8:44,673,554...44,680,950
Ensembl chr 8:44,673,554...44,680,957
JBrowse link
G Nnt nicotinamide nucleotide transhydrogenase IEP RGD PMID:25761734 RGD:13513980 NCBI chr 2:51,411,413...51,505,125
Ensembl chr 2:51,411,413...51,504,823
JBrowse link
G Pdx1 pancreatic and duodenal homeobox 1 IEP biotin RGD PMID:11833042 RGD:2311192 NCBI chr12:7,757,865...7,763,064
Ensembl chr12:7,757,865...7,763,064
JBrowse link
G Pemt phosphatidylethanolamine N-methyltransferase IDA RGD PMID:7766014 RGD:1642377 NCBI chr10:44,775,910...44,849,990
Ensembl chr10:44,775,911...44,850,013
JBrowse link
G Setdb1 SET domain bifurcated histone lysine methyltransferase 1 IEP choline RGD PMID:23413810 RGD:9491848 NCBI chr 2:182,898,738...182,930,283
Ensembl chr 2:182,898,738...182,930,506
JBrowse link
response to vitamin A term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abcb1a ATP binding cassette subfamily B member 1A IEP RGD PMID:26729079 RGD:11041096 NCBI chr 4:25,357,467...25,529,941
Ensembl chr 4:25,158,362...25,442,709
JBrowse link
G Abcb1b ATP-binding cassette, subfamily B (MDR/TAP), member 1B IEP RGD PMID:26729079 RGD:11041096 NCBI chr 4:25,242,761...25,325,194
Ensembl chr 4:25,242,798...25,325,199
JBrowse link
G Ager advanced glycosylation end product-specific receptor IEP RGD PMID:22274401 RGD:7245566 NCBI chr20:4,148,150...4,151,361
Ensembl chr20:4,147,890...4,151,078
JBrowse link
G Aldh1a2 aldehyde dehydrogenase 1 family, member A2 IEP RGD PMID:11169459 RGD:2306337 NCBI chr 8:71,877,850...71,957,107
Ensembl chr 8:71,877,850...71,957,107
JBrowse link
G Apoc3 apolipoprotein C3 IEP RGD PMID:7811230 RGD:1599187 NCBI chr 8:46,531,478...46,533,658
Ensembl chr 8:46,531,478...46,533,583
JBrowse link
G Arg1 arginase 1 IEP RGD PMID:18271400 RGD:4142841 NCBI chr 1:20,475,878...20,488,422
Ensembl chr 1:20,475,968...20,488,422
JBrowse link
G Bdnf brain-derived neurotrophic factor IEP RGD PMID:21188516 RGD:4891124 NCBI chr 3:96,165,042...96,215,621
Ensembl chr 3:96,165,042...96,215,615
JBrowse link
G Cat catalase IEP RGD PMID:23485553 RGD:9068476 NCBI chr 3:89,842,393...89,874,577
Ensembl chr 3:89,842,399...89,874,478
JBrowse link
G Cd44 CD44 molecule (Indian blood group) IEP RGD PMID:16804311 RGD:2289372 NCBI chr 3:89,155,850...89,244,615
Ensembl chr 3:89,157,058...89,244,620
JBrowse link
G Cyp1a1 cytochrome P450, family 1, subfamily a, polypeptide 1 IEP Retinal or retinol RGD PMID:10381141 RGD:2306682 NCBI chr 8:58,096,021...58,102,130
Ensembl chr 8:58,096,077...58,102,125
JBrowse link
G Cyp26a1 cytochrome P450, family 26, subfamily a, polypeptide 1 IEP RGD PMID:19700416 RGD:6484694 NCBI chr 1:235,471,368...235,475,204
Ensembl chr 1:235,471,298...235,475,204
JBrowse link
G Cyp26b1 cytochrome P450, family 26, subfamily b, polypeptide 1 IEP RGD PMID:19700416 RGD:6484694 NCBI chr 4:117,041,808...117,058,628
Ensembl chr 4:117,041,808...117,058,628
JBrowse link
G Dnmt1 DNA methyltransferase 1 IEP RGD PMID:23333085 RGD:9588314 NCBI chr 8:19,440,611...19,486,659
Ensembl chr 8:19,440,611...19,486,659
JBrowse link
G Dnmt3a DNA methyltransferase 3 alpha IEP RGD PMID:23333085 RGD:9588314 NCBI chr 6:26,791,517...26,902,161
Ensembl chr 6:26,822,609...26,896,687
JBrowse link
G Dnmt3b DNA methyltransferase 3 beta IEP RGD PMID:23333085 RGD:9588314 NCBI chr 3:142,130,592...142,169,124
Ensembl chr 3:142,130,592...142,169,124
JBrowse link
G Epo erythropoietin IEP RGD PMID:9027729 RGD:2313658 NCBI chr12:19,204,258...19,207,948
Ensembl chr12:19,204,508...19,207,946
JBrowse link
G Fads1 fatty acid desaturase 1 IEP RGD PMID:11414679 RGD:632758 NCBI chr 1:206,827,724...206,842,734
Ensembl chr 1:206,827,765...206,842,734
JBrowse link
G Gata4 GATA binding protein 4 IEP RGD PMID:23333085 RGD:9588314 NCBI chr15:37,459,601...37,531,291
Ensembl chr15:37,459,601...37,505,636
JBrowse link
G Gsr glutathione-disulfide reductase IEP RGD PMID:22984325 RGD:7257533 NCBI chr16:58,482,209...58,525,256
Ensembl chr16:58,482,505...58,525,661
JBrowse link
G Hamp hepcidin antimicrobial peptide IEP RGD PMID:24998947 RGD:11041625 NCBI chr 1:86,170,926...86,172,865
Ensembl chr 1:86,170,901...86,172,891
JBrowse link
G Lrat lecithin retinol acyltransferase IEP RGD PMID:19700416 RGD:6484694 NCBI chr 2:168,264,093...168,273,155
Ensembl chr 2:168,266,877...168,273,619
JBrowse link
G Map1b microtubule-associated protein 1B IEP RGD PMID:12414111 RGD:2304021 NCBI chr 2:30,817,261...30,910,458
Ensembl chr 2:30,817,261...30,910,317
JBrowse link
G Mmp9 matrix metallopeptidase 9 IEP RGD PMID:17164434 RGD:1642048 NCBI chr 3:153,684,158...153,692,118
Ensembl chr 3:153,683,858...153,692,120
JBrowse link
G Muc2 mucin 2, oligomeric mucus/gel-forming IEP RGD PMID:18495461 RGD:2324677 NCBI chr 1:196,796,257...196,831,740
Ensembl chr 1:196,799,517...196,831,756
JBrowse link
G Muc3 mucin 3, intestinal IEP RGD PMID:18495461 RGD:2324677 NCBI chr12:19,527,251...19,536,924
Ensembl chr12:19,527,321...19,538,522
JBrowse link
G Muc4 mucin 4, cell surface associated IEP RGD PMID:10634605 RGD:2303747 NCBI chr11:68,008,245...68,053,229 JBrowse link
G Muc5ac mucin 5AC, oligomeric mucus/gel-forming IEP RGD PMID:10634605 RGD:2303747 NCBI chr 1:196,864,375...196,896,475
Ensembl chr 1:196,864,336...196,896,475
JBrowse link
G Pitx2 paired-like homeodomain 2 IEP RGD PMID:18955041 RGD:5131996 NCBI chr 2:217,717,738...217,737,293
Ensembl chr 2:217,717,693...217,737,293
JBrowse link
G Ppard peroxisome proliferator-activated receptor delta IEP RGD PMID:19342198 RGD:2324880 NCBI chr20:6,298,785...6,363,970
Ensembl chr20:6,298,785...6,363,968
JBrowse link
G Pparg peroxisome proliferator-activated receptor gamma IEP RGD PMID:18384703 RGD:2301891 NCBI chr 4:148,423,102...148,548,471
Ensembl chr 4:148,423,194...148,548,468
JBrowse link
G Rara retinoic acid receptor, alpha IEP RGD PMID:18384703 RGD:2301891 NCBI chr10:83,883,490...83,928,932
Ensembl chr10:83,893,384...83,928,142
JBrowse link
G Rbp1 retinol binding protein 1 acts_upstream_of_or_within ISO MGI:2181412 (MGI:1931374|PMID:11222375) RGD PMID:11222375 MGI:1931374 NCBI chr 8:99,025,218...99,046,740
Ensembl chr 8:99,025,206...99,046,743
JBrowse link
G Rxra retinoid X receptor alpha IEP RGD PMID:16180333 RGD:1643110 NCBI chr 3:10,989,832...11,076,366
Ensembl chr 3:10,989,832...11,073,712
JBrowse link
G Serpina7 serpin family A member 7 IDA RGD PMID:6785400 RGD:2312335 NCBI chr  X:102,663,242...102,722,319
Ensembl chr  X:102,663,405...102,669,040
JBrowse link
G Sftpa1 surfactant protein A1 IEP RGD PMID:10385596 RGD:4144157 NCBI chr16:17,008,180...17,011,686
Ensembl chr16:17,008,180...17,011,685
JBrowse link
G Sftpb surfactant protein B IEP RGD PMID:10385596 RGD:4144157 NCBI chr 4:104,359,303...104,368,439
Ensembl chr 4:104,359,396...104,368,436
JBrowse link
G Sftpc surfactant protein C IEP RGD PMID:10385596 RGD:4144157 NCBI chr15:45,596,565...45,599,615
Ensembl chr15:45,596,574...45,610,777
JBrowse link
G Si sucrase-isomaltase IEP RGD PMID:15309444 RGD:1625547 NCBI chr 2:157,505,893...157,586,228
Ensembl chr 2:157,506,342...157,585,260
JBrowse link
G Slc30a4 solute carrier family 30 member 4 IEP RGD PMID:12421840 RGD:2299952 NCBI chr 3:109,753,270...109,775,306
Ensembl chr 3:109,753,273...109,775,306
JBrowse link
G Slc34a1 solute carrier family 34 member 1 IEP RGD PMID:20507281 RGD:7243129 NCBI chr17:9,218,876...9,233,852
Ensembl chr17:9,218,876...9,233,852
JBrowse link
G Tshb thyroid stimulating hormone subunit beta IEP RGD PMID:17311942 RGD:1624303 NCBI chr 2:190,224,676...190,229,559
Ensembl chr 2:190,224,676...190,229,559
JBrowse link
G Tyms thymidylate synthetase IEP RGD PMID:10395942 RGD:5133444 NCBI chr 9:113,313,454...113,329,551
Ensembl chr 9:113,313,452...113,329,536
JBrowse link
G Vegfa vascular endothelial growth factor A IEP RGD PMID:23106861 RGD:7483561 NCBI chr 9:14,955,300...14,970,641
Ensembl chr 9:14,955,300...14,970,641
JBrowse link
response to vitamin B1 term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Alad aminolevulinate dehydratase IEP RGD PMID:20088549 RGD:4144199 NCBI chr 5:75,961,993...75,972,334
Ensembl chr 5:75,961,993...75,972,474
JBrowse link
G Tspo translocator protein IEP RGD PMID:10517697 RGD:2317171 NCBI chr 7:114,720,188...114,730,450
Ensembl chr 7:114,720,188...114,730,450
JBrowse link
response to vitamin B2 term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cebpa CCAAT/enhancer binding protein alpha IEP RGD PMID:16856317 RGD:1625375 NCBI chr 1:87,759,631...87,762,303
Ensembl chr 1:87,759,433...87,762,412
JBrowse link
G Mthfr methylenetetrahydrofolate reductase IEP RGD PMID:3676170 RGD:2317124 NCBI chr 5:158,465,248...158,484,999
Ensembl chr 5:158,465,296...158,483,797
JBrowse link
response to vitamin B3 term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Angpt1 angiopoietin 1 IEP RGD PMID:17557352 RGD:1643100 NCBI chr 7:73,528,345...73,783,953
Ensembl chr 7:73,531,486...73,784,067
JBrowse link
G Ccl2 C-C motif chemokine ligand 2 IEP RGD PMID:19420110 RGD:2306994 NCBI chr10:67,005,424...67,007,222
Ensembl chr10:67,005,424...67,007,226
JBrowse link
G Tp53 tumor protein p53 IEP RGD PMID:17516866 RGD:2290576 NCBI chr10:54,300,070...54,311,525
Ensembl chr10:54,300,048...54,311,524
JBrowse link
response to vitamin B6 term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Alpl alkaline phosphatase, biomineralization associated involved_in ISO MGI:2183411|MGI:97370 (MGI:2182493|PMID:12082181) RGD PMID:12082181 MGI:2182493 NCBI chr 5:149,951,397...150,006,424
Ensembl chr 5:149,951,409...150,006,446
JBrowse link
G Enpp1 ectonucleotide pyrophosphatase/phosphodiesterase 1 involved_in ISO MGI:87983 (MGI:2182493|PMID:12082181) RGD PMID:12082181 MGI:2182493 NCBI chr 1:20,698,746...20,763,741
Ensembl chr 1:20,698,764...20,763,715
JBrowse link
G Kynu kynureninase involved_in ISO (PMID:1939450) RGD PMID:1939450 NCBI chr 3:27,778,646...27,929,470
Ensembl chr 3:27,778,772...27,929,488
JBrowse link
G Serpina3n serine (or cysteine) peptidase inhibitor, clade A, member 3N IEP RGD PMID:21462331 RGD:8662394 NCBI chr 6:123,323,632...123,331,166
Ensembl chr 6:123,323,629...123,332,433
JBrowse link
response to vitamin D term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abcb1a ATP binding cassette subfamily B member 1A IEP RGD PMID:20013813 RGD:2315563 NCBI chr 4:25,357,467...25,529,941
Ensembl chr 4:25,158,362...25,442,709
JBrowse link
G Alpl alkaline phosphatase, biomineralization associated involved_in ISO (PMID:17023519) RGD PMID:17023519 NCBI chr 5:149,951,397...150,006,424
Ensembl chr 5:149,951,409...150,006,446
JBrowse link
G Bglap bone gamma-carboxyglutamate protein involved_in ISO (PMID:17023519) RGD PMID:17023519 NCBI chr 2:173,838,518...173,839,495
Ensembl chr 2:173,838,518...173,839,495
JBrowse link
G Bmp7 bone morphogenetic protein 7 IEP RGD PMID:17554252 RGD:2289035 NCBI chr 3:161,639,915...161,716,938
Ensembl chr 3:161,516,462...161,716,788
JBrowse link
G Cd4 Cd4 molecule IEP RGD PMID:8759780 RGD:10058969 NCBI chr 4:157,668,878...157,695,366 JBrowse link
G Cdkn2d cyclin dependent kinase inhibitor 2D involved_in ISO (PMID:16322758) RGD PMID:16322758 NCBI chr 8:19,831,874...19,834,640
Ensembl chr 8:19,831,866...19,834,674
JBrowse link
G Crym crystallin, mu IEP RGD PMID:2809492 RGD:2303730 NCBI chr 1:174,560,423...174,575,660
Ensembl chr 1:174,560,416...174,575,633
JBrowse link
G Cxcl10 C-X-C motif chemokine ligand 10 IEP RGD PMID:15637289 RGD:2311387 NCBI chr14:15,704,772...15,706,969
Ensembl chr14:15,704,758...15,706,975
JBrowse link
G Cyp24a1 cytochrome P450, family 24, subfamily a, polypeptide 1 involved_in IBA
ISO
PMID:21873635
(PMID:16720713)
RGD PMID:16720713 PMID:21873635 RGD:13792537 NCBI chr 3:159,275,947...159,290,383
Ensembl chr 3:159,275,947...159,290,383
JBrowse link
G Cyp27b1 cytochrome P450, family 27, subfamily b, polypeptide 1 involved_in IDA
IEA
ISO
IBA
GO_REF:0000107
(MGI:1097206|PMID:9295274)
PMID:21873635
(PMID:16549446)
Ensembl
RGD
PMID:9295274 PMID:16549446 PMID:3000565 PMID:21873635 GO_REF:0000107 MGI:1097206, RGD:2307325, RGD:13792537 NCBI chr 7:62,869,340...62,876,242
Ensembl chr 7:62,871,297...62,876,241
JBrowse link
G Ggcx gamma-glutamyl carboxylase IEP RGD PMID:3840747 RGD:11040515 NCBI chr 4:104,469,737...104,485,631
Ensembl chr 4:104,469,765...104,487,063
JBrowse link
G Il1b interleukin 1 beta IEP RGD PMID:17621647 RGD:1626651 NCBI chr 3:116,577,005...116,583,386
Ensembl chr 3:116,577,010...116,583,415
JBrowse link
G Insr insulin receptor IEP 1,25-dihydroxyvitamin D3, in diabetic rats RGD PMID:18638371 RGD:2307025 NCBI chr12:1,193,193...1,330,976
Ensembl chr12:1,197,100...1,330,883
JBrowse link
G Kl Klotho IEP RGD PMID:20631679 RGD:10403078 NCBI chr12:490,402...531,417
Ensembl chr12:490,399...530,080
JBrowse link
G Lrp2 LDL receptor related protein 2 IEP RGD PMID:9541123 RGD:1641848 NCBI chr 3:54,189,305...54,346,769
Ensembl chr 3:54,189,308...54,346,708
JBrowse link
G Phex phosphate regulating endopeptidase homolog, X-linked IEP RGD PMID:14693675 RGD:11556273 NCBI chr  X:37,607,553...37,856,183
Ensembl chr  X:37,610,760...37,854,469
JBrowse link
G Pla2g4a phospholipase A2 group IVA IEP RGD PMID:15225789 RGD:1642467 NCBI chr13:61,877,818...62,022,261
Ensembl chr13:61,877,813...62,022,266
JBrowse link
G Prkcb protein kinase C, beta IEP RGD PMID:10206343 RGD:1625620 NCBI chr 1:176,832,173...177,163,539
Ensembl chr 1:176,832,226...177,163,536
JBrowse link
G Ptgs2 prostaglandin-endoperoxide synthase 2 IEP RGD PMID:18348265 RGD:2300284 NCBI chr13:62,164,080...62,169,770
Ensembl chr13:62,163,932...62,172,188
JBrowse link
G Pth parathyroid hormone IEP RGD PMID:22926202 RGD:7242796 NCBI chr 1:167,508,121...167,511,530
Ensembl chr 1:167,508,598...167,511,530
JBrowse link
G Rxra retinoid X receptor alpha IEP RGD PMID:12048211 RGD:625496 NCBI chr 3:10,989,832...11,076,366
Ensembl chr 3:10,989,832...11,073,712
JBrowse link
G Serpinh1 serpin family H member 1 IEP RGD PMID:32585450 RGD:41410783 NCBI chr 1:153,643,500...153,650,853
Ensembl chr 1:153,643,510...153,650,801
JBrowse link
G Slc8a2 solute carrier family 8 member A2 IEP RGD PMID:20113508 RGD:2316972 NCBI chr 1:76,816,583...76,852,928
Ensembl chr 1:76,808,725...76,847,072
JBrowse link
G Spp1 secreted phosphoprotein 1 involved_in ISO (PMID:16720713) RGD PMID:16720713 NCBI chr14:5,308,885...5,315,120
Ensembl chr14:5,308,885...5,315,162
JBrowse link
G Stc1 stanniocalcin 1 IEP RGD PMID:11702003 RGD:2324701 NCBI chr15:44,299,591...44,311,695
Ensembl chr15:44,299,621...44,310,264
JBrowse link
G Stc2 stanniocalcin 2 IEP RGD PMID:10508929 RGD:634221 NCBI chr10:16,251,046...16,260,815
Ensembl chr10:16,250,853...16,262,973
JBrowse link
G Tgfb1 transforming growth factor, beta 1 IEP RGD PMID:11956143 PMID:24613393 RGD:2302111, RGD:11073674 NCBI chr 1:81,196,532...81,212,848
Ensembl chr 1:81,196,532...81,212,847
JBrowse link
G Tgfb2 transforming growth factor, beta 2 IEP RGD PMID:11956143 RGD:2302111 NCBI chr13:98,160,075...98,261,771
Ensembl chr13:98,160,087...98,261,405
JBrowse link
G Tpcn2 two pore segment channel 2 IEP RGD PMID:20197420 RGD:9585651 NCBI chr 1:200,416,538...200,446,252
Ensembl chr 1:200,416,540...200,446,236
JBrowse link
G Trim25 tripartite motif-containing 25 IEP RGD PMID:10425199 RGD:1300518 NCBI chr10:73,812,818...73,831,271
Ensembl chr10:73,812,818...73,831,257
JBrowse link
G Tyr tyrosinase IEP RGD PMID:6175546 RGD:8694330 NCBI chr 1:141,115,036...141,210,207
Ensembl chr 1:141,115,036...141,210,207
JBrowse link
G Vim vimentin IEP RGD PMID:18687349 RGD:6480443 NCBI chr17:76,668,701...76,677,186
Ensembl chr17:76,668,647...76,677,187
JBrowse link
response to vitamin E term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ada adenosine deaminase IDA RGD PMID:16716042 RGD:1624294 NCBI chr 3:152,398,745...152,422,854
Ensembl chr 3:152,398,747...152,447,088
JBrowse link
G Alad aminolevulinate dehydratase IEP in lead-treated rats RGD PMID:17572058 RGD:4144165 NCBI chr 5:75,961,993...75,972,334
Ensembl chr 5:75,961,993...75,972,474
JBrowse link
G Arg1 arginase 1 IEP RGD PMID:14624471 RGD:4143267 NCBI chr 1:20,475,878...20,488,422
Ensembl chr 1:20,475,968...20,488,422
JBrowse link
G Arg2 arginase 2 IEP RGD PMID:14624471 RGD:4143267 NCBI chr 6:97,936,002...97,961,379
Ensembl chr 6:97,936,002...97,961,378
JBrowse link
G Bcl2 BCL2, apoptosis regulator IEP RGD PMID:26261574 RGD:11085403 NCBI chr13:22,689,783...22,853,920 JBrowse link
G Becn1 beclin 1 IEP RGD PMID:19138675 RGD:6483096 NCBI chr10:86,231,387...86,246,742
Ensembl chr10:86,231,388...86,246,742
JBrowse link
G Cat catalase IEP RGD PMID:19641679 PMID:19914224 RGD:5130868, RGD:9068475 NCBI chr 3:89,842,393...89,874,577
Ensembl chr 3:89,842,399...89,874,478
JBrowse link
G Ccnd1 cyclin D1 IEP RGD PMID:17015179 RGD:2289141 NCBI chr 1:200,089,002...200,098,524
Ensembl chr 1:200,089,002...200,098,602
JBrowse link
G Ccne1 cyclin E1 IEP RGD PMID:16298738 RGD:2289285 NCBI chr 1:90,781,947...90,791,188
Ensembl chr 1:90,781,949...90,791,101
JBrowse link
G Cyp11a1 cytochrome P450, family 11, subfamily a, polypeptide 1 IEP in PCB-treated rats RGD PMID:17280759 RGD:4891016 NCBI chr 8:58,422,807...58,434,342
Ensembl chr 8:58,404,669...58,434,338
JBrowse link
G Eif2ak2 eukaryotic translation initiation factor 2-alpha kinase 2 IPI RGD PMID:17953670 RGD:2301732 NCBI chr 6:16,189,000...16,224,972
Ensembl chr 6:16,188,979...16,224,971
JBrowse link
G Fkbp1b FKBP prolyl isomerase 1B IEP RGD PMID:18611397 RGD:2302078 NCBI chr 6:27,832,128...27,850,600
Ensembl chr 6:27,838,802...27,848,653
JBrowse link
G Gstt1 glutathione S-transferase theta 1 IEP RGD PMID:9855024 RGD:7794855 NCBI chr20:12,856,613...12,873,586
Ensembl chr20:12,856,669...12,873,585
JBrowse link
G Hmgcs1 3-hydroxy-3-methylglutaryl-CoA synthase 1 IEP RGD PMID:15753162 RGD:2326153 NCBI chr 2:51,649,368...51,667,100
Ensembl chr 2:51,649,497...51,667,100
JBrowse link
G Hsd17b3 hydroxysteroid (17-beta) dehydrogenase 3 IEP in PCB-treated rats RGD PMID:17280759 RGD:4891016 NCBI chr17:1,027,229...1,058,554
Ensembl chr17:1,027,229...1,058,554
JBrowse link
G Hsd3b1 hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 1 IEP in PCB-treated rats RGD PMID:17280759 RGD:4891016 NCBI chr 2:186,169,864...186,175,984
Ensembl chr 2:186,169,863...186,175,999
JBrowse link
G Igf1r insulin-like growth factor 1 receptor IEP RGD PMID:17447016 RGD:2311524 NCBI chr 1:121,549,839...121,838,545
Ensembl chr 1:121,550,743...121,831,777
JBrowse link
G Lep leptin IEP RGD PMID:20404018 RGD:5128593 NCBI chr 4:57,661,127...57,675,262
Ensembl chr 4:57,661,131...57,675,262
JBrowse link
G Mef2c myocyte enhancer factor 2C IEP RGD PMID:16534476 RGD:5131617 NCBI chr 2:13,973,299...14,136,065
Ensembl chr 2:13,993,438...14,132,880
JBrowse link
G Mif macrophage migration inhibitory factor IEP RGD PMID:10609875 RGD:1642014 NCBI chr20:12,790,919...12,791,784
Ensembl chr20:12,790,902...12,799,504
JBrowse link
G Nos1 nitric oxide synthase 1 IEP RGD PMID:17200156 RGD:1642147 NCBI chr12:38,615,111...38,795,492
Ensembl chr12:38,626,714...38,710,945
JBrowse link
G Orm1 orosomucoid 1 IEP RGD PMID:11444866 RGD:1601045 NCBI chr 5:76,766,637...76,776,149
Ensembl chr 5:76,772,941...76,776,154
JBrowse link
G Srsf2 serine and arginine rich splicing factor 2 IEP RGD PMID:15247049 RGD:11039057 NCBI chr10:102,052,158...102,055,365
Ensembl chr10:102,052,314...102,055,338
JBrowse link
response to vitamin K term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bglap bone gamma-carboxyglutamate protein IEP RGD PMID:21944271 RGD:6483564 NCBI chr 2:173,838,518...173,839,495
Ensembl chr 2:173,838,518...173,839,495
JBrowse link
G F5 coagulation factor V IEP RGD PMID:658784 RGD:11564341 NCBI chr13:76,513,463...76,583,106
Ensembl chr13:76,513,255...76,582,317
JBrowse link
G F7 coagulation factor VII IEP RGD PMID:3379837 RGD:2312317 NCBI chr16:76,489,779...76,500,636
Ensembl chr16:76,489,717...76,500,610
JBrowse link
G Ggcx gamma-glutamyl carboxylase IEP RGD PMID:8702425 RGD:2316484 NCBI chr 4:104,469,737...104,485,631
Ensembl chr 4:104,469,765...104,487,063
JBrowse link
vitamin D receptor signaling pathway term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pim1 Pim-1 proto-oncogene, serine/threonine kinase involved_in ISO (PMID:22720752) RGD PMID:22720752 NCBI chr20:7,554,921...7,559,174
Ensembl chr20:7,554,921...7,559,174
JBrowse link
G Vdr vitamin D receptor involved_in ISO
IEA
(PMID:16549446), (PMID:28698609)
GO_REF:0000107
RGD
Ensembl
PMID:16549446 PMID:28698609 GO_REF:0000107 NCBI chr 7:128,987,981...129,037,677
Ensembl chr 7:128,987,981...129,037,677
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19834
    response to stimulus 10556
      response to chemical 6262
        response to nutrient 317
          behavioral response to nutrient + 1
          cellular response to nutrient + 67
          detection of nutrient + 0
          response to vitamin + 185
Path 2
Term Annotations click to browse term
  biological_process 19834
    response to stimulus 10556
      response to external stimulus 3256
        response to extracellular stimulus 785
          response to nutrient levels 753
            response to nutrient 317
              behavioral response to nutrient + 1
              cellular response to nutrient + 67
              detection of nutrient + 0
              response to vitamin + 185
paths to the root