Scap (Rattus norvegicus - Norway rat) |
Rat Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCr8 | 8 | 119,184,366 - 119,239,086 (+) | NCBI | | GRCr8 | | | mRatBN7.2 | 8 | 110,306,026 - 110,360,677 (+) | NCBI | mRatBN7.2 | mRatBN7.2 | | | mRatBN7.2 Ensembl | 8 | 110,306,031 - 110,360,666 (+) | Ensembl | | mRatBN7.2 Ensembl | | | UTH_Rnor_SHR_Utx | 8 | 115,921,501 - 115,976,170 (+) | NCBI | Rnor_SHR | UTH_Rnor_SHR_Utx | | | UTH_Rnor_SHRSP_BbbUtx_1.0 | 8 | 114,120,688 - 114,175,360 (+) | NCBI | Rnor_SHRSP | UTH_Rnor_SHRSP_BbbUtx_1.0 | | | UTH_Rnor_WKY_Bbb_1.0 | 8 | 111,963,481 - 112,018,151 (+) | NCBI | Rnor_WKY | UTH_Rnor_WKY_Bbb_1.0 | | | Rnor_6.0 | 8 | 118,551,869 - 118,628,650 (+) | NCBI | Rnor6.0 | Rnor_6.0 | rn6 | Rnor6.0 | Rnor_6.0 Ensembl | 8 | 118,570,503 - 118,628,651 (+) | Ensembl | Rnor6.0 | | rn6 | Rnor6.0 | Rnor_5.0 | 8 | 117,895,671 - 117,972,292 (+) | NCBI | Rnor5.0 | Rnor_5.0 | rn5 | Rnor5.0 | RGSC_v3.4 | 8 | 114,706,479 - 114,761,342 (+) | NCBI | RGSC3.4 | RGSC_v3.4 | rn4 | RGSC3.4 | RGSC_v3.1 | 8 | 114,725,918 - 114,780,799 (+) | NCBI | | | | | Celera | 8 | 109,591,567 - 109,646,089 (+) | NCBI | | Celera | | | Cytogenetic Map | 8 | q32 | NCBI | | | | |
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SCAP (Homo sapiens - human) |
Human Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCh38 | 3 | 47,413,681 - 47,477,127 (-) | NCBI | GRCh38 | GRCh38 | hg38 | GRCh38 | GRCh38.p14 Ensembl | 3 | 47,413,681 - 47,477,126 (-) | Ensembl | GRCh38 | | hg38 | GRCh38 | GRCh37 | 3 | 47,455,171 - 47,517,431 (-) | NCBI | GRCh37 | GRCh37 | hg19 | GRCh37 | Build 36 | 3 | 47,430,188 - 47,492,449 (-) | NCBI | NCBI36 | Build 36 | hg18 | NCBI36 | Celera | 3 | 47,393,823 - 47,458,772 (-) | NCBI | | Celera | | | Cytogenetic Map | 3 | p21.31 | NCBI | | | | | HuRef | 3 | 47,498,135 - 47,563,088 (-) | NCBI | | HuRef | | | CHM1_1 | 3 | 47,405,412 - 47,467,423 (-) | NCBI | | CHM1_1 | | | T2T-CHM13v2.0 | 3 | 47,430,101 - 47,496,247 (-) | NCBI | | T2T-CHM13v2.0 | | |
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Scap (Mus musculus - house mouse) |
Mouse Assembly | Chr | Position (strand) | Source | Genome Browsers |
---|
JBrowse | NCBI | UCSC | Ensembl |
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GRCm39 | 9 | 110,162,356 - 110,214,017 (+) | NCBI | GRCm39 | GRCm39 | mm39 | | GRCm39 Ensembl | 9 | 110,162,356 - 110,214,018 (+) | Ensembl | | GRCm39 Ensembl | | | GRCm38 | 9 | 110,333,288 - 110,384,949 (+) | NCBI | GRCm38 | GRCm38 | mm10 | GRCm38 | GRCm38.p6 Ensembl | 9 | 110,333,288 - 110,384,950 (+) | Ensembl | GRCm38 | | mm10 | GRCm38 | MGSCv37 | 9 | 110,235,797 - 110,287,450 (+) | NCBI | GRCm37 | MGSCv37 | mm9 | NCBIm37 | MGSCv36 | 9 | 110,178,523 - 110,230,113 (+) | NCBI | | MGSCv36 | mm8 | | Celera | 9 | 110,062,305 - 110,113,905 (+) | NCBI | | Celera | | | Cytogenetic Map | 9 | F2 | NCBI | | | | | cM Map | 9 | 59.91 | NCBI | | | | |
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Scap (Chinchilla lanigera - long-tailed chinchilla) |
Chinchilla Assembly | Chr | Position (strand) | Source | Genome Browsers |
---|
JBrowse | NCBI | UCSC | Ensembl |
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ChiLan1.0 Ensembl | NW_004955420 | 24,813,534 - 24,869,480 (+) | Ensembl | ChiLan1.0 | | | | ChiLan1.0 | NW_004955420 | 24,813,683 - 24,869,602 (+) | NCBI | ChiLan1.0 | ChiLan1.0 | | |
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SCAP (Pan paniscus - bonobo/pygmy chimpanzee) |
Bonobo Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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NHGRI_mPanPan1-v2 | 2 | 47,370,784 - 47,435,759 (-) | NCBI | | NHGRI_mPanPan1-v2 | | | NHGRI_mPanPan1 | 3 | 47,375,552 - 47,441,673 (-) | NCBI | | NHGRI_mPanPan1 | | | Mhudiblu_PPA_v0 | 3 | 47,314,535 - 47,379,455 (-) | NCBI | Mhudiblu_PPA_v0 | Mhudiblu_PPA_v0 | panPan3 | | PanPan1.1 | 3 | 48,414,012 - 48,446,721 (-) | NCBI | panpan1.1 | PanPan1.1 | panPan2 | | PanPan1.1 Ensembl | 3 | 48,414,012 - 48,479,845 (-) | Ensembl | panpan1.1 | | panPan2 | |
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SCAP (Canis lupus familiaris - dog) |
Dog Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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CanFam3.1 | 20 | 41,418,507 - 41,485,681 (+) | NCBI | CanFam3.1 | CanFam3.1 | canFam3 | CanFam3.1 | CanFam3.1 Ensembl | 20 | 41,418,536 - 41,487,024 (+) | Ensembl | CanFam3.1 | | canFam3 | CanFam3.1 | Dog10K_Boxer_Tasha | 20 | 41,335,033 - 41,402,084 (+) | NCBI | | Dog10K_Boxer_Tasha | | | ROS_Cfam_1.0 | 20 | 41,901,526 - 41,968,598 (+) | NCBI | | ROS_Cfam_1.0 | | | ROS_Cfam_1.0 Ensembl | 20 | 41,901,549 - 41,968,593 (+) | Ensembl | | ROS_Cfam_1.0 Ensembl | | | UMICH_Zoey_3.1 | 20 | 41,143,535 - 41,210,564 (+) | NCBI | | UMICH_Zoey_3.1 | | | UNSW_CanFamBas_1.0 | 20 | 41,544,714 - 41,611,716 (+) | NCBI | | UNSW_CanFamBas_1.0 | | | UU_Cfam_GSD_1.0 | 20 | 41,825,295 - 41,892,343 (+) | NCBI | | UU_Cfam_GSD_1.0 | | |
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Scap (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
Squirrel Assembly | Chr | Position (strand) | Source | Genome Browsers |
---|
JBrowse | NCBI | UCSC | Ensembl |
---|
HiC_Itri_2 | NW_024405118 | 201,575,434 - 201,631,109 (-) | NCBI | | HiC_Itri_2 | | | SpeTri2.0 Ensembl | NW_004936596 | 1,122,042 - 1,180,297 (-) | Ensembl | SpeTri2.0 | SpeTri2.0 Ensembl | | | SpeTri2.0 | NW_004936596 | 1,124,573 - 1,180,219 (-) | NCBI | SpeTri2.0 | SpeTri2.0 | | SpeTri2.0 |
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SCAP (Sus scrofa - pig) |
Pig Assembly | Chr | Position (strand) | Source | Genome Browsers |
---|
JBrowse | NCBI | UCSC | Ensembl |
---|
Sscrofa11.1 Ensembl | 13 | 30,253,268 - 30,320,526 (-) | Ensembl | Sscrofa11.1 | | susScr11 | Sscrofa11.1 | Sscrofa11.1 | 13 | 30,253,262 - 30,320,625 (-) | NCBI | Sscrofa11.1 | Sscrofa11.1 | susScr11 | Sscrofa11.1 | Sscrofa10.2 | 13 | 33,483,930 - 33,551,346 (-) | NCBI | Sscrofa10.2 | Sscrofa10.2 | susScr3 | |
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SCAP (Chlorocebus sabaeus - green monkey) |
Green Monkey Assembly | Chr | Position (strand) | Source | Genome Browsers |
---|
JBrowse | NCBI | UCSC | Ensembl |
---|
ChlSab1.1 | 22 | 8,821,809 - 8,887,538 (-) | NCBI | ChlSab1.1 | ChlSab1.1 | chlSab2 | | ChlSab1.1 Ensembl | 22 | 8,818,980 - 8,850,202 (-) | Ensembl | ChlSab1.1 | ChlSab1.1 Ensembl | chlSab2 | | Vero_WHO_p1.0 | NW_023666041 | 158,240,615 - 158,318,574 (+) | NCBI | Vero_WHO_p1.0 | Vero_WHO_p1.0 | | |
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Scap (Heterocephalus glaber - naked mole-rat) |
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