Gnpat (glyceronephosphate O-acyltransferase) - Rat Genome Database

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Gene: Gnpat (glyceronephosphate O-acyltransferase) Rattus norvegicus
Analyze
Symbol: Gnpat
Name: glyceronephosphate O-acyltransferase
RGD ID: 620179
Description: Predicted to enable glycerone-phosphate O-acyltransferase activity. Involved in several processes, including response to fatty acid; response to nutrient; and response to starvation. Located in mitochondrion and peroxisomal membrane. Human ortholog(s) of this gene implicated in rhizomelic chondrodysplasia punctata type 2. Orthologous to human GNPAT (glyceronephosphate O-acyltransferase); PARTICIPATES IN plasmalogen biosynthetic pathway; plasmalogen metabolic pathway; glycerophospholipid metabolic pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene; 2-methoxyethanol.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: acyl-CoA:dihydroxyacetonephosphate acyltransferase; acyl-CoA:dihydroxyacetonephosphateacyltransferase; DAP-AT; DHAP-AT; dihydroxyacetone phosphate acyltransferase; glycerone-phosphate O-acyltransferase
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21952,822,326 - 52,848,872 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl1952,822,319 - 52,852,361 (+)Ensembl
Rnor_6.01957,614,813 - 57,640,524 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1957,614,628 - 57,640,726 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01968,328,052 - 68,353,763 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41955,033,777 - 55,059,491 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11955,038,657 - 55,064,372 (+)NCBI
Celera1952,189,653 - 52,215,396 (+)NCBICelera
Cytogenetic Map19q12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

Additional References at PubMed
PMID:8186247   PMID:10456321   PMID:11792727   PMID:12477932   PMID:12874108   PMID:15687349   PMID:19270340   PMID:19946888   PMID:20178365   PMID:21525035  


Genomics

Comparative Map Data
Gnpat
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21952,822,326 - 52,848,872 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl1952,822,319 - 52,852,361 (+)Ensembl
Rnor_6.01957,614,813 - 57,640,524 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1957,614,628 - 57,640,726 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01968,328,052 - 68,353,763 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41955,033,777 - 55,059,491 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11955,038,657 - 55,064,372 (+)NCBI
Celera1952,189,653 - 52,215,396 (+)NCBICelera
Cytogenetic Map19q12NCBI
GNPAT
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381231,241,212 - 231,277,973 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl1231,241,207 - 231,277,973 (+)EnsemblGRCh38hg38GRCh38
GRCh371231,376,958 - 231,413,719 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361229,443,605 - 229,480,156 (+)NCBINCBI36hg18NCBI36
Build 341227,683,716 - 227,720,270NCBI
Celera1204,641,787 - 204,678,590 (+)NCBI
Cytogenetic Map1q42.2NCBI
HuRef1201,860,306 - 201,897,106 (+)NCBIHuRef
CHM1_11232,650,570 - 232,687,371 (+)NCBICHM1_1
T2T-CHM13v2.01230,624,475 - 230,661,237 (+)NCBI
Gnpat
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm398125,589,772 - 125,616,796 (+)NCBIGRCm39mm39
GRCm39 Ensembl8125,589,772 - 125,616,796 (+)Ensembl
GRCm388124,863,033 - 124,890,057 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl8124,863,033 - 124,890,057 (+)EnsemblGRCm38mm10GRCm38
MGSCv378127,386,933 - 127,413,957 (+)NCBIGRCm37mm9NCBIm37
MGSCv368127,749,177 - 127,776,147 (+)NCBImm8
Celera8129,171,508 - 129,198,742 (+)NCBICelera
Cytogenetic Map8E2NCBI
cM Map872.81NCBI
Gnpat
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554927,489,080 - 7,519,590 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554927,489,080 - 7,519,590 (-)NCBIChiLan1.0ChiLan1.0
GNPAT
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11211,819,259 - 211,855,974 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1211,819,259 - 211,855,885 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01206,794,245 - 206,830,840 (+)NCBIMhudiblu_PPA_v0panPan3
GNPAT
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.148,155,186 - 8,190,403 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl48,155,191 - 8,190,229 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha48,147,533 - 8,182,713 (-)NCBI
ROS_Cfam_1.048,180,644 - 8,215,844 (-)NCBI
ROS_Cfam_1.0 Ensembl48,180,644 - 8,215,139 (-)Ensembl
UMICH_Zoey_3.148,184,206 - 8,219,358 (-)NCBI
UNSW_CanFamBas_1.048,306,165 - 8,341,341 (-)NCBI
UU_Cfam_GSD_1.048,534,802 - 8,569,933 (-)NCBI
Gnpat
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934443,248,868 - 43,276,893 (-)NCBI
SpeTri2.0NW_00493648419,414,094 - 19,434,929 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GNPAT
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1459,203,090 - 59,241,247 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11459,203,519 - 59,240,303 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21463,872,123 - 63,904,272 (-)NCBISscrofa10.2Sscrofa10.2susScr3
GNPAT
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12568,518,643 - 68,553,055 (+)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl2568,518,300 - 68,553,767 (+)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605570,426,054 - 70,460,430 (+)NCBIVero_WHO_p1.0
Gnpat
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462477518,410,755 - 18,439,246 (-)EnsemblHetGla_female_1.0hetGla2
HetGla 1.0NW_00462477518,410,514 - 18,443,169 (-)NCBIHetGla_female_1.0hetGla2

Position Markers
RH129086  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21952,848,909 - 52,849,075 (+)MAPPERmRatBN7.2
Rnor_6.01957,641,205 - 57,641,370NCBIRnor6.0
Rnor_5.01968,354,444 - 68,354,609UniSTSRnor5.0
RGSC_v3.41955,060,172 - 55,060,337UniSTSRGSC3.4
Celera1952,216,077 - 52,216,242UniSTS
RH 3.4 Map19725.7UniSTS
Cytogenetic Map19q12UniSTS
BE116945  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21952,850,678 - 52,850,828 (+)MAPPERmRatBN7.2
Rnor_6.01957,642,974 - 57,643,123NCBIRnor6.0
Rnor_5.01968,356,213 - 68,356,362UniSTSRnor5.0
RGSC_v3.41955,061,941 - 55,062,090UniSTSRGSC3.4
Celera1952,217,846 - 52,217,995UniSTS
RH 3.4 Map19720.9UniSTS
Cytogenetic Map19q12UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
724566Uae12Urinary albumin excretion QTL 125urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)19218792756457239Rat
1331737Uae29Urinary albumin excretion QTL 295.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)19409615555283277Rat
7411549Bw130Body weight QTL 13050.001body mass (VT:0001259)body weight gain (CMO:0000420)191545586057337602Rat
1578764Stresp19Stress response QTL 193.60.001blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)191563020157337602Rat
2298478Eau8Experimental allergic uveoretinitis QTL 80.0163uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)191715443357337602Rat
61350Bp32Blood pressure QTL 320.012arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)192048357557337602Rat
724546Kidm3Kidney mass QTL 33.1kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)192932249057337602Rat
1358200Insglur2Insulin/glucose ratio QTL 24.1blood glucose amount (VT:0000188)serum insulin level (CMO:0000358)193383821455283146Rat
1358200Insglur2Insulin/glucose ratio QTL 24.1blood glucose amount (VT:0000188)serum glucose level (CMO:0000543)193383821455283146Rat
5135224Leukc1Leukocyte quantity QTL 1eosinophil quantity (VT:0002602)blood eosinophil count (CMO:0000033)194434021455283277Rat
2313395Anxrr26Anxiety related response QTL 26aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)194997648153225766Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:303
Count of miRNA genes:191
Interacting mature miRNAs:212
Transcripts:ENSRNOT00000026617
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 43 49 33 19 33 8 11 74 35 41 11 8
Low 8 8 8
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000026617   ⟹   ENSRNOP00000026617
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1952,822,319 - 52,852,361 (+)Ensembl
Rnor_6.0 Ensembl1957,614,628 - 57,640,726 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000096315   ⟹   ENSRNOP00000077229
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1952,826,730 - 52,848,473 (+)Ensembl
RefSeq Acc Id: NM_053410   ⟹   NP_445862
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21952,822,326 - 52,848,867 (+)NCBI
Rnor_6.01957,614,813 - 57,640,524 (+)NCBI
Rnor_5.01968,328,052 - 68,353,763 (+)NCBI
RGSC_v3.41955,033,777 - 55,059,491 (+)RGD
Celera1952,189,653 - 52,215,396 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039098042   ⟹   XP_038953970
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21952,829,883 - 52,848,867 (+)NCBI
RefSeq Acc Id: XM_039098043   ⟹   XP_038953971
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21952,824,276 - 52,848,872 (+)NCBI
Reference Sequences
RefSeq Acc Id: NP_445862   ⟸   NM_053410
- UniProtKB: Q9ES71 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSRNOP00000026617   ⟸   ENSRNOT00000026617
RefSeq Acc Id: XP_038953971   ⟸   XM_039098043
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038953970   ⟸   XM_039098042
- Peptide Label: isoform X1
RefSeq Acc Id: ENSRNOP00000077229   ⟸   ENSRNOT00000096315

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9ES71-F1-model_v2 AlphaFold Q9ES71 1-678 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13701242
Promoter ID:EPDNEW_R11765
Type:multiple initiation site
Name:Gnpat_1
Description:glyceronephosphate O-acyltransferase
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01957,614,642 - 57,614,702EPDNEW

Strain Variation

Strain Sequence Variants (MRatBN7.2)
ACI/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN-Lx/CubMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BUF/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH2/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH3/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
DA/OlaHsd (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/DuCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE16/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE18/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GK/FarMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB10/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB2/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB20/IpcvMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB31/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB4/IpcvMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEW/Crl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF10A/StmMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF11/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1A/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1C/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF2B/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF3/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF4/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LH/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LL/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LN/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/NRrrcMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MR/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MWF/Hsd (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
PVG/Seac (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHR/OlalpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/A3NCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SR/JrHsd (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SS/JrHsdMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WAG/RijCrl (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/NCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WN/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:620179 AgrOrtholog
BioCyc Gene G2FUF-5228 BioCyc
BioCyc Pathway PWY-7411 [phosphatidate biosynthesis (yeast)] BioCyc
  PWY-7782 [plasmalogen biosynthesis] BioCyc
Ensembl Genes ENSRNOG00000019205 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Protein ENSRNOP00000026617 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSRNOP00000077229 ENTREZGENE
Ensembl Transcript ENSRNOT00000026617 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSRNOT00000096315 ENTREZGENE
InterPro DHAPAT UniProtKB/Swiss-Prot
  GPAT/DHAPAT UniProtKB/Swiss-Prot
  GPAT/DHAPAT_LPLAT UniProtKB/Swiss-Prot
  GPAT_C UniProtKB/Swiss-Prot
  Plipid/glycerol_acylTrfase UniProtKB/Swiss-Prot
KEGG Report rno:84470 UniProtKB/Swiss-Prot
NCBI Gene 84470 ENTREZGENE
PANTHER PTHR12563 UniProtKB/Swiss-Prot
Pfam Acyltransferase UniProtKB/Swiss-Prot
  GPAT_C UniProtKB/Swiss-Prot
PhenoGen Gnpat PhenoGen
PIRSF DHAPAT UniProtKB/Swiss-Prot
  GPAT_DHAPAT UniProtKB/Swiss-Prot
SMART PlsC UniProtKB/Swiss-Prot
UniProt GNPAT_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2004-09-10 Gnpat  glyceronephosphate O-acyltransferase    acyl-CoA:dihydroxyacetonephosphate acyltransferase  Name updated 1299863 APPROVED
2002-08-07 Gnpat  acyl-CoA:dihydroxyacetonephosphate acyltransferase      Symbol and Name status set to provisional 70820 PROVISIONAL

RGD Curation Notes
Note Type Note Reference
gene_cellular_localization localized to peroxisomes