Leukc1 QTL Report (Rattus norvegicus) - Rat Genome Database

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QTL: Leukc1 (Leukocyte quantity QTL 1) Rattus norvegicus

Symbol: Leukc1
Name: Leukocyte quantity QTL 1
RGD ID: 5135224
Also known as: eosinophilia 1; eos1
Trait: eosinophil quantity   (VT:0002602)    
Measurement Type: blood eosinophil count   (CMO:0000033)    
LOD Score: LRS: 16.4
P Value: Not Available
Variance: Not Available
Inheritance Type: recessive
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21944,340,214 - 55,283,277RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.01948,830,712 - 60,220,581RGD_MAPPER_PIPELINERnor6.0
Rnor_5.01959,631,471 - 70,892,142RGDRnor5.0
RGSC_v3.41912,235,101 - 57,235,101RGDRGSC3.4
Cross Type: Not Available
Strains Crossed: ACI/NSlc MES/Slc 
JBrowse: View Region in Genome Browser (JBrowse)
Model



Candidate Gene Status
Irf8 is a candidate Gene for Leukc1
Zfpm1 is a candidate Gene for Leukc1

Disease Annotations     Click to see Annotation Detail View
Eosinophilia  (IAGP)

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

Experimental Condition

Measurement Method

Vertebrate Trait

Rat Strain
ACI/NSlc  (IEA)
MES/Slc  (IEA)

References

References - curated
1. Li G, etal., Mamm Genome. 2005 Jul;16(7):516-23.

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
11373677LOC10834894440S ribosomal protein S14 pseudogene194890408848904621Rat
1306930Dynlrb2dynein light chain roadblock-type 2194901691949028400Rat
1309548Cdyl2chromodomain Y-like 2194908713149222528Rat
7597227LOC102547670uncharacterized LOC102547670194932834049334234Rat
2324599Cmc2C-x(9)-C motif containing 2194943333249457641Rat
1310953Cenpncentromere protein N194945746149479989Rat
1305781AtminATM interactor194948248249499682Rat
9402617LOC103694344uncharacterized LOC103694344194949003449493806Rat
1586501LOC687399hypothetical protein LOC687399194950832149518721Rat
619946Gcshglycine cleavage system protein H194952205449532811Rat
1588631Pkd1l2polycystin 1 like 2194953512249624291Rat
70981Bco1beta-carotene oxygenase 1194963705949673577Rat
7598317LOC10254815940S ribosomal protein S24-like194966495649665990Rat
1307766Gangigaxonin194969279049746178Rat
1306101Cmipc-Maf-inducing protein194979227350000535Rat
1597338LOC690350similar to LSM7 homolog, U6 small nuclear RNA associated194979962249804218Rat
7644005LOC102548434ATP synthase subunit f, mitochondrial-like194988178249883930Rat
7688675LOC102548350uncharacterized LOC102548350194989948149904447Rat
3348Plcg2phospholipase C, gamma 2195003941050173543Rat
1308481Sdr42e1short chain dehydrogenase/reductase family 42E, member 1195020796050220455Rat
9363358LOC103694345uncharacterized LOC103694345195022562950226155Rat
621803Hsd17b2hydroxysteroid (17-beta) dehydrogenase 2195024640450317892Rat
1591222Mphosph6M phase phosphoprotein 6195035731450367137Rat
619745Cdh13cadherin 13195084879351971618Rat
7685344LOC102552714cyclin-dependent kinase 2-interacting protein-like195120472751233777Rat
628632Hsbp1heat shock factor binding protein 1195198519651989528Rat
620234Mlycdmalonyl-CoA decarboxylase195203295052048773Rat
620679Osgin1oxidative stress induced growth inhibitor 1195205680852085491Rat
621844Necab2N-terminal EF-hand calcium binding protein 2195208632552112633Rat
1560237Slc38a8solute carrier family 38, member 8195211051752142500Rat
70935Mbtps1membrane-bound transcription factor peptidase, site 1195214650752206310Rat
1308433Hsdl1hydroxysteroid dehydrogenase like 1195220940352225486Rat
1310542Dnaaf1dynein, axonemal, assembly factor 1195221742752245930Rat
7599081LOC102546392NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2-like195223466852235816Rat
1305658Taf1cTATA-box binding protein associated factor, RNA polymerase 1 subunit C195224606152252642Rat
1586236Adad2adenosine deaminase domain containing 2195225890852263031Rat
1308553Kcng4potassium voltage-gated channel modifier subfamily G member 4195227090752283317Rat
68938Wfdc1WAP four-disulfide core domain 1195231377152332721Rat
620647Atp2c2ATPase secretory pathway Ca2+ transporting 2195234748052404608Rat
7727982LOC102549202uncharacterized LOC102549202195236668552371533Rat
9230020LOC103694346uncharacterized LOC103694346195240466952408004Rat
1308461Meak7MTOR associated protein, eak-7 homolog195240870052430198Rat
1305498Cotl1coactosin-like F-actin binding protein 1195246507452499433Rat
9363365LOC10369434740S ribosomal protein S25 pseudogene195251358552514385Rat
1561366Klhl36kelch-like family member 36195251502252536055Rat
1561965Usp10ubiquitin specific peptidase 10195256627452608820Rat
620860Crispld2cysteine-rich secretory protein LCCL domain containing 2195264703852705118Rat
620205Zdhhc7zinc finger DHHC-type palmitoyltransferase 7195273316152750307Rat
1304884RGD1304884similar to RIKEN cDNA 6430548M08195276335253742184Rat
9685086FendrrFOXF1 adjacent non-coding developmental regulatory RNA195299128353010509Rat
1584229Foxf1forkhead box F1195301230653016100Rat
1584226Mthfsdmethenyltetrahydrofolate synthetase domain containing195302552653036559Rat
621703Foxc2forkhead box C2195304437953047081Rat
1584212Foxl1forkhead box L1195305488753058624Rat
9204125LOC103694348uncharacterized LOC103694348195317897953183779Rat
1587275LOC367563similar to nucleolar protein family A, member 2195327320153273695Rat
11473545LOC108348955uncharacterized LOC108348955195335164953387401Rat
9078397LOC103694349uncharacterized LOC103694349195338380853387407Rat
1584205LOC687560hypothetical protein LOC687560195346780653481093Rat
1561069Fbxo31F-box protein 31195348761053625673Rat
11447020Trnam-cau13transfer RNA methionine (anticodon CAU) 13195362616853626240Rat
621315Map1lc3bmicrotubule-associated protein 1 light chain 3 beta195363544953643970Rat
1309494Zcchc14zinc finger CCHC-type containing 14195364450053688624Rat
1560673Cibar2CBY1 interacting BAR domain containing 2195374076353754738Rat
7729006LOC102551361uncharacterized LOC102551361195378905453798644Rat
9325357LOC103694350uncharacterized LOC103694350195379926153802291Rat
1562686Gse1Gse1 coiled-coil protein195379994554153732Rat
9331243LOC103694351uncharacterized LOC103694351195386127953862805Rat
7599182LOC102551937uncharacterized LOC102551937195391526953924647Rat
9170168LOC103694353uncharacterized LOC103694353195396798953972438Rat
9356339LOC103694352uncharacterized LOC103694352195397972153980799Rat
11511009LOC108348949uncharacterized LOC108348949195399919754000939Rat
7610785LOC102551873uncharacterized LOC102551873195402353954026450Rat
1565689RGD1565689RGD1565689195406117454068816Rat
1311055Gins2GINS complex subunit 2195415104854163701Rat
1309651RGD1309651similar to 1190005I06Rik protein195418455454210872Rat
1311219Emc8ER membrane protein complex subunit 8195423594954245810Rat
68374Cox4i1cytochrome c oxidase subunit 4i1195424595854252198Rat
7599156LOC102552167uncharacterized LOC102552167195427005154275545Rat
1312024Irf8interferon regulatory factor 8195431485954336643Rat
11391299LOC108348951uncharacterized LOC108348951195434351054365759Rat
11377465LOC108348952uncharacterized LOC108348952195438777954392826Rat
11412029LOC108348953uncharacterized LOC108348953195440851954415699Rat
7627380LOC102552360uncharacterized LOC102552360195443302254439611Rat
7526201LOC102550418uncharacterized LOC102550418195452500254537389Rat
1308416Jph3junctophilin 3195455341954613477Rat
4888596Mir3564microRNA 3564195463200854632119Rat
1561676Klhdc4kelch domain containing 4195465191154652381Rat
11406245LOC108348956uncharacterized LOC108348956195466962854689004Rat
620639Slc7a5solute carrier family 7 member 5195469395954722563Rat
7581426LOC102550600uncharacterized LOC102550600195472264654724011Rat
2243Ca5acarbonic anhydrase 5A195473182954761697Rat
1307464BanpBtg3 associated nuclear protein195476644154843795Rat
1583874Zfp469zinc finger protein 469195484386455083935Rat
1582810Zfpm1zinc finger protein, multitype 1195509458555150994Rat
621262Mlnrmotilin receptor195517661755183562Rat
1303257Zc3h18zinc finger CCCH-type containing 18195519734855241800Rat
1582798Il17cinterleukin 17C195524692655248688Rat
620573Cybacytochrome b-245 alpha chain195524963455257824Rat
621292Mvdmevalonate diphosphate decarboxylase195525891055268933Rat
1309658Snai3snail family transcriptional repressor 3195527621155290031Rat
1302950Rnf166ring finger protein 166195529056355300403Rat
1562594Ctu2cytosolic thiouridylase subunit 2195530053155305543Rat
1308822Piezo1piezo-type mechanosensitive ion channel component 1195530549455367680Rat
9392387LOC103694354uncharacterized LOC103694354195537761055379502Rat
1309211Cdt1chromatin licensing and DNA replication factor 1195538156555386511Rat
1307758Aprtadenine phosphoribosyl transferase195538728855389256Rat
1565391Galnsgalactosamine (N-acetyl)-6-sulfatase195539100455423328Rat
1304906Trappc2ltrafficking protein particle complex subunit 2L195542335055428551Rat
1562761Pabpn1lpoly(A)binding protein nuclear 1-like195543080855434252Rat
1310547Cbfa2t3CBFA2/RUNX1 partner transcriptional co-repressor 3195543840955510652Rat
11444374LOC108348958uncharacterized LOC108348958195545397455460775Rat
7526633LOC102550963uncharacterized LOC102550963195553791055554971Rat
9144337LOC103694355uncharacterized LOC103694355195554326755548945Rat
6502735LOC100909629uncharacterized LOC100909629195556247455576682Rat
1586037Acsf3acyl-CoA synthetase family member 3195559480155635312Rat
7689592LOC102551324uncharacterized LOC102551324195560961855611349Rat
11378322LOC108348960uncharacterized LOC108348960195561275755622531Rat
1303000Cdh15cadherin 15195566966155689986Rat
1306679Ankrd11ankyrin repeat domain 11195570383155862446Rat
11440615LOC10834898140S ribosomal protein S13-like195587536755875855Rat
7650106LOC102551789uncharacterized LOC102551789195587821955880566Rat
727940Spg7SPG7 matrix AAA peptidase subunit, paraplegin195588054955914729Rat
621179Rpl13ribosomal protein L13195591748955920040Rat
1307466Cpne7copine 7195592955555946251Rat
9208211LOC103694356uncharacterized LOC103694356195593311555936517Rat
1310002Sult5a1sulfotransferase family 5A, member 1195595286155978583Rat
620324Dpep1dipeptidase 1195597344755998830Rat
1311083Chmp1acharged multivesicular body protein 1A195600172456010004Rat
1561507Spata33spermatogenesis associated 33195601008556022424Rat
1304851Cdk10cyclin-dependent kinase 10195602490356032610Rat
1560840Spata2Lspermatogenesis associated 2-like195603260756037873Rat
1565149Vps9d1VPS9 domain containing 1195604052756054199Rat
1307469Zfp276zinc finger protein (C2H2 type) 276195605425056067767Rat
1311380FancaFA complementation group A195606754856126075Rat
1305837Spire2spire-type actin nucleation factor 2195613690456175500Rat
1309054Tcf25transcription factor 25195617890556213299Rat
1312046Mc1rmelanocortin 1 receptor195621542056219987Rat
628595Tubb3tubulin, beta 3 class III195622075956229813Rat
1309008Def8differentially expressed in FDCP 8 homolog195623835356259867Rat
1309722Afg3l1AFG3(ATPase family gene 3)-like 1 (S. cerevisiae)195627217156299323Rat
1310008Dbndd1dysbindin domain containing 1195630270456311991Rat
1307817Gas8growth arrest specific 8195631636756335873Rat
11498720LOC108348962uncharacterized LOC108348962195636321656368946Rat
9293536LOC103694357uncharacterized LOC103694357195636677956368977Rat
1596918Rhouras homolog family member U195643178756443896Rat
7670659LOC102546393uncharacterized LOC102546393195645220156463008Rat
7535996LOC102546589uncharacterized LOC102546589195649044556493941Rat
11362865LOC108348963uncharacterized LOC108348963195654543156547200Rat
3529Rab4aRAB4A, member RAS oncogene family195658559856613078Rat
1563235Ccsapcentriole, cilia and spindle-associated protein195661532656634031Rat
11416554LOC108348965uncharacterized LOC108348965195663990956649597Rat
9310092LOC10369435860S ribosomal protein L35a pseudogene195664079356641179Rat
2025Acta1actin, alpha 1, skeletal muscle195667407256677084Rat
1307827Nup133nucleoporin 133195668196556731404Rat
1311222Abcb10ATP binding cassette subfamily B member 10195674280956772904Rat
7653389LOC102546849ATP synthase subunit g, mitochondrial-like195676210256764982Rat
1310215Taf5lTATA-box binding protein associated factor 5 like195678185456801005Rat
1307980Urb2URB2 ribosome biogenesis homolog195680284356827017Rat
2321701LOC100360656eukaryotic translation initiation factor 4E-like195682944256832157Rat
11432871LOC108348967eukaryotic translation initiation factor 4E pseudogene195683024656836890Rat
1563459RGD1563459RGD1563459195684581456846284Rat
7541954LOC102547196uncharacterized LOC102547196195686430956867269Rat
7692620LOC102549352uncharacterized LOC102549352195689944756904387Rat
11431234LOC108348968uncharacterized LOC108348968195690305856925169Rat
2318737LOC100362146claudin 7-like195692563756927557Rat
735056Cox6c-ps1cytochrome c oxidase subunit VIc, pseudogene195698294956983807Rat
1310692Galnt2polypeptide N-acetylgalactosaminyltransferase 2195704385857115123Rat
1310825Pgbd5piggyBac transposable element derived 5195712611057192182Rat
11455539LOC108348970uncharacterized LOC108348970195719804757206872Rat
1589822Cog2component of oligomeric golgi complex 2195728695557322853Rat
9356343LOC103694359uncharacterized LOC103694359195730962257310632Rat
2069Agtangiotensinogen195732159457333460Rat
70965Capn9calpain 9195734193857378901Rat
1559896RGD1559896similar to RIKEN cDNA 2310022B05195739660657422124Rat
1310186Ttc13tetratricopeptide repeat domain 13195742998057484583Rat
1310264Arv1ARV1 homolog, fatty acid homeostasis modulator195748472057496539Rat
1309879Fam89afamily with sequence similarity 89, member A195750230857514896Rat
7603772LOC102549725uncharacterized LOC102549725195754179857544210Rat
1560667Trim67tripartite motif-containing 67195755466557593401Rat
1562218RGD1562218similar to RIKEN cDNA 0610039J04195760023157614558Rat
620179Gnpatglyceronephosphate O-acyltransferase195761481357640524Rat
620245Exoc8exocyst complex component 8195764730557649794Rat
1559496SprtnSprT-like N-terminal domain195764990157657158Rat
631375Egln1egl-9 family hypoxia-inducible factor 1195766019457701158Rat
2318551LOC100362234single-stranded DNA binding protein 1-like195770962257715641Rat
7536826LOC102549918uncharacterized LOC102549918195775097657755256Rat
621574Tsnaxtranslin-associated factor X195777153957785567Rat
7737414LOC10255001360S ribosomal protein L27-like195777324457775633Rat
1593149LOC502210similar to 40S ribosomal protein S25195780945857812918Rat
631359Disc1DISC1 scaffold protein195781883858069992Rat
11385125LOC108348971uncharacterized LOC108348971195794095057954742Rat
9330218LOC103694360spore coat protein SP65-like195799300457994430Rat
7580695LOC102557452uncharacterized LOC102557452195815205758158468Rat
1306269Sipa1l2signal-induced proliferation-associated 1 like 2195823620158399842Rat
1307467SetSET nuclear proto-oncogene195842063558422153Rat
1308644Map10microtubule-associated protein 10195850581158508603Rat
1306192Ntpcrnucleoside-triphosphatase, cancer-related195856557658579276Rat
1305883Pcnx2pecanex 2195858300058736069Rat
11390839LOC108353198uncharacterized LOC108353198195861640158622426Rat
11387689LOC108353197involucrin-like195865252258657606Rat
1306091Map3k21mitogen-activated protein kinase kinase kinase 21195874499558779408Rat
621447Kcnk1potassium two pore domain channel subfamily K member 1195882383658862926Rat
1589548Slc35f3solute carrier family 35, member F3195896803659305300Rat
7507388LOC102552129tubulin alpha-1B chain-like195916116059161630Rat
7559315Coa6cytochrome c oxidase assembly factor 6195932732859333706Rat
1589526Tarbp1TAR (HIV-1) RNA binding protein 1195933139959384807Rat
1589517Irf2bp2interferon regulatory factor 2 binding protein 2195949702159502298Rat
11454071LOC108348976uncharacterized LOC108348976195953233359550640Rat
11368559LOC108348977uncharacterized LOC108348977195956320959567395Rat
11485604LOC108348978uncharacterized LOC108348978195960710759623345Rat
7671054LOC102547567uncharacterized LOC102547567195964565459660070Rat
7712946LOC102547513uncharacterized LOC102547513195965370259662562Rat
7578198LOC102547637uncharacterized LOC102547637195966494459666742Rat
7602217LOC102547807uncharacterized LOC102547807195975411559758994Rat
708467Tomm20translocase of outer mitochondrial membrane 20195986342159873411Rat
1310161Rbm34RNA binding motif protein 34195987474559894981Rat
6489015LOC100912076HAUS augmin-like complex subunit 2-like195991319359914417Rat
1586125LOC365026hypothetical pseudogene on chromosome 19195994270559981563Rat
1587112Hmg1l1high-mobility group (nonhistone chromosomal) protein 1-like 1195998423459985494Rat
1587087LOC679596similar to GABA(A) receptor-associated protein like 2195999065059991859Rat
620374Pard3par-3 family cell polarity regulator196001774660580628Rat
7717197LOC102548266uncharacterized LOC102548266196012866960135039Rat
9347580LOC10369436660S ribosomal protein L28 pseudogene196019909560200433Rat

Markers in Region
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolExpected SizeChrStartStopSpeciesMatch
33735D19Mit11202195196152351961715Ratregion
36972D19Rat21129195473521754735354Ratregion
37006D19Rat6154195231200052312149Ratregion
37050D3Rat22361195206862152068973Ratregion
36709D19Rat8172194883071248830874Ratregion
35028D19Rat2151195807199358072143Ratregion
35807D19Rat7153194987318649873333Ratregion
35973D19Rat3164195739082557390984Ratregion
39632D19Rat100228196010424860104475Ratregion
39944D19Rat58126195672350056723617Ratregion
38034D19Rat38229195070086750701097Ratregion
39430D19Rat62112195052359650523711Ratregion
39516D19Rat60205195806383658064029Ratregion
41262D19Rat57131196022045160220581Ratregion
40858D19Rat63214195071694650717152Ratregion
40962D19Rat61147195060208050602220Ratregion
43134D19Rat107147195092141650921540Ratregion
43135D19Rat106105195809404458094162Ratregion
43136D19Rat105212195643124756431459Ratregion
43136D19Rat105212195613637056136582Ratregion
43137D19Rat103149195633811056338267Ratregion
45648D19Got49227194891049748910718Ratregion
45650D19Got52143194918879249188932Ratregion
45652D19Got48243194958464449584886Ratregion
45653D19Got51251194964410349644353Ratregion
45657D19Got53202195144826451448465Ratregion
45658D19Got55276195399989054000164Ratregion
45660D19Got54210195428779354288002Ratregion
60190D19Got62221195235939152359650Ratregion
1630527D19Got136136195925101959251151Ratregion
1631103D19Got135127194893068248930808Ratregion
1630035D19Got112128195460975854609885Ratregion
1638569D19Got113172195640307356403260Ratregion
1638569D19Got113172195610819656108383Ratregion
1633285D19Got120106195605368956053789Ratregion
1640151D19Got111168195506031055060477Ratregion
1635650D19Got114167195701670457016870Ratregion
1636438D19Got127234195752963257529865Ratregion
1636706D19Got125133195757403257574164Ratregion
1638405D19Got142179195892074758920925Ratregion
1638405D19Got142179195892054758920925Ratregion
1633828D19Got115198195753239657532593Ratregion
1634291D19Got138260195298985052990109Ratregion
7206006Foxf1a183195301310753013289Ratregion
5036085Aprt60195538760055387852Ratregion
5038830RH127357208194975259549752802Ratregion
5038948RH127425213195425095754252044Ratregion
7206650Zfpm1904195514975755150660Ratregion
5036235UniSTS:142656340195819846358198802Ratregion
5039272RH127611190195674252656742715Ratregion
5036833AU049352232194883718548837416Ratregion
5034097RH141350201195743016257430362Ratregion
5031552AU047953139195207659652076729Ratregion
5031598AU047796205195633811056338314Ratregion
5031600AU047788173195633808456338265Ratregion
5031668AU047547187195309101553091201Ratregion
5034261RH141971184195684372256843905Ratregion
5026272RH131577188195530514755305477Ratregion
5026418RH132136185195630274556302929Ratregion
5026440RH132220186194902742149028321Ratregion
5029119RH143593287195603671356037011Ratregion
5034572BE119741160195158900451589163Ratregion
5034624BF390337197195754869057548887Ratregion
5029315RH144332169194975022249750390Ratregion
5029605BI283745150195621293056213079Ratregion
5032511D8Ertd713e214195625898756259200Ratregion
5034950AI236754133195208533352085465Ratregion
5027375AI314065120195000176850001887Ratregion
5027377AI18209090195644374156443830Ratregion
5025048AU015315244195591333955913582Ratregion
5030367BI29404596195326177353261868Ratregion
5030437BI288552171195259649252596662Ratregion
5033383RH138637203195524998355250185Ratregion
5033607RH139442121195677644156776561Ratregion
5025638RH129086166195764120557641370Ratregion
5028289D8Mit140122195819602358196144Ratregion
5028291D8Mit148331195655827956558609Ratregion
5033833RH140287183195644356556443747Ratregion
5028497X92498188195305691053057097Ratregion
5031137BI298201213195664639756646609Ratregion
5051863RH94702199195017329250173490Ratregion
5056239RH144263155195204315852043312Ratregion
5056863RH144624166195240437552404540Ratregion
5057100AI058627216195956706359567278Ratregion
5057408AA963875152195415347254153623Ratregion
5057498AI704778218195667408556674302Ratregion
5055411RH143786116195515010255150217Ratregion
5059518BE097197173195870208158702253Ratregion
5059518BE097197173195870179558702253Ratregion
5054763RH143411231195383488353835113Ratregion
5057950BF392976166195458094654581111Ratregion
5058558BF393292116195454196554542080Ratregion
5059558BE097296193195886259058862782Ratregion
5052484AA959943193195667408656674278Ratregion
5058148AI136171136194947941249479547Ratregion
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5503027MARC_52622-52623:1146767377:1174195619844156198732Ratregion
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5507614Cox4a234195425100354252111Ratregion
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5499995UniSTS:236036107195544057355440679Ratregion
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5502419RH12476184195198940751989490Ratregion
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5502022MARC_24021-24022:1029778648:1606195622875956229364Ratregion
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Position Markers

Flank 1: (D19Rat8)
Rat AssemblyChrPosition (strand)Source
mRatBN7.21944,340,214 - 44,340,377 (+)MAPPER
Rnor_6.01948,830,712 - 48,830,874NCBI
Rnor_5.01959,631,471 - 59,631,633UniSTS
Celera1943,635,359 - 43,635,521UniSTS
RH 3.4 Map19595.8RGD
RH 3.4 Map19595.8UniSTS
RH 2.0 Map19617.5RGD
SHRSP x BN Map1938.1498RGD
FHH x ACI Map1940.38RGD
Flank 2: (D19Rat57)
Rat AssemblyChrPosition (strand)Source
mRatBN7.21955,283,146 - 55,283,277 (+)MAPPER
Rnor_6.01960,220,451 - 60,220,581NCBI
Rnor_5.01970,892,012 - 70,892,142UniSTS
RGSC_v3.41957,234,802 - 57,235,101RGD
RGSC_v3.41957,234,859 - 57,234,989UniSTS
RGSC_v3.11957,239,862 - 57,240,161RGD
Celera1954,621,043 - 54,621,173UniSTS
SHRSP x BN Map1942.5498RGD
SHRSP x BN Map1942.5498UniSTS
Cytogenetic Map19q12UniSTS


QTLs in Region (Rnor_6.0)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
724546Kidm3Kidney mass QTL 33.1kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)193299439262275575Rat
724566Uae12Urinary albumin excretion QTL 125urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)19243296362275575Rat
1331737Uae29Urinary albumin excretion QTL 295.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)19650676160220581Rat
1331788Rf45Renal function QTL 452.818kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)191702800352538299Rat
2298478Eau8Experimental allergic uveoretinitis QTL 80.0163uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)192140778762275575Rat
1578764Stresp19Stress response QTL 193.60.001blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)191899398262275575Rat
2313395Anxrr26Anxiety related response QTL 26aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)195473521758072143Rat
1358200Insglur2Insulin/glucose ratio QTL 24.1blood glucose amount (VT:0000188)serum glucose level (CMO:0000543)193791679960220451Rat
1358200Insglur2Insulin/glucose ratio QTL 24.1blood glucose amount (VT:0000188)serum insulin level (CMO:0000358)193791679960220451Rat
61350Bp32Blood pressure QTL 320.012arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)192481825762275575Rat
5135224Leukc1Leukocyte quantity QTL 1eosinophil quantity (VT:0002602)blood eosinophil count (CMO:0000033)194883071260220581Rat
7411549Bw130Body weight QTL 13050.001body mass (VT:0001259)body weight gain (CMO:0000420)191917749562275575Rat


Additional Information

RGD Curation Notes
Note Type Note Reference
qtl_cand_genes 1312024 5135221
qtl_cross_pair backcross 5135221
qtl_general explains 19% of the total variance with an additive effect of 162.7 by the MES allele 5135221
qtl_general explains 19% of the total variance with an additive effect of 162.7 by the MES allele 5135221
qtl_general number of animals used: 328 backcross rats 5135221
qtl_general measurement method: blood samples were collected from the jugular vein of 12 weeks old rats anesthetized with ether; number of leukocytes was counted by an automated cell counter and differential leukocyte counts (%) were determined on blood film stained with Wright's stain 5135221
qtl_general lineage: 7 eosinophilic male rats from F9 and F10 generation were backcrossed to MES/Slc 5135221
qtl_general software used: Map Manager QTXb20 5135221
qtl_statistics LRS: 16.4 5135221