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Gene: Gatm (glycine amidinotransferase) Rattus norvegicus
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Symbol: Gatm
Name: glycine amidinotransferase
Description: Exhibits amidinotransferase activity. Involved in several processes, including embryonic liver development; response to mercury ion; and tissue regeneration. Predicted to localize to the mitochondrial intermembrane space. Biomarker of acute kidney failure. Human ortholog(s) of this gene implicated in AGAT deficiency. Orthologous to human GATM (glycine amidinotransferase); PARTICIPATES IN AGAT deficiency pathway; arginine and proline metabolic pathway; dihydropyrimidine dehydrogenase deficiency pathway; INTERACTS WITH 2,2,2-tetramine; 2,3,7,8-tetrachlorodibenzodioxine; 2-amino-2-deoxy-D-glucopyranose.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: AT; glycine amidinotransferase (L-arginine:glycine amidinotransferase); glycine amidinotransferase, mitochondrial; L-arginine: glycine amidinotransferase; L-arginine:glycine amidinotransferase; MGC93388; transamidinase
Orthologs:
Homo sapiens (human) : GATM (glycine amidinotransferase)  HGNC  Alliance
Mus musculus (house mouse) : Gatm (glycine amidinotransferase (L-arginine:glycine amidinotransferase))  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Gatm (glycine amidinotransferase)
Pan paniscus (bonobo/pygmy chimpanzee) : GATM (glycine amidinotransferase)
Canis lupus familiaris (dog) : GATM (glycine amidinotransferase)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Gatm (glycine amidinotransferase)
Sus scrofa (pig) : GATM (glycine amidinotransferase)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
NCBI Annotation Information: Annotation category: suggests misassembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.03114,711,570 - 114,728,155 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.03121,249,707 - 121,266,292 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43109,558,043 - 109,565,432 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.13109,463,621 - 109,470,996 (-)NCBI
Celera3108,536,141 - 108,553,426 (-)NCBICelera
Cytogenetic Map3q35NCBI
RH 3.4 Map3965.7RGD
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
Molecular Pathway Annotations
References - curated
References - uncurated
RGD Disease Portals

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome
Promoters

Strain Variation

Strain Sequence Variants (Rnor 5.0)

Additional Information

External Database Links
Nomenclature History
RGD Curation Notes
 
More on Gatm
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

RGD Object Information
RGD ID: 71090
Created: 2002-07-09
Species: Rattus norvegicus
Last Modified: 2019-04-23
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.