Nrf1 (nuclear respiratory factor 1) - Rat Genome Database

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Gene: Nrf1 (nuclear respiratory factor 1) Rattus norvegicus
Analyze
Symbol: Nrf1
Name: nuclear respiratory factor 1
RGD ID: 1304603
Description: Predicted to have DNA-binding transcription activator activity, RNA polymerase II-specific; RNA polymerase II cis-regulatory region sequence-specific DNA binding activity; and protein homodimerization activity. Involved in several processes, including response to estradiol; response to folic acid; and response to lipopolysaccharide. Localizes to cytoplasm and nucleus. Biomarker of brain ischemia. Human ortholog(s) of this gene implicated in Huntington's disease. Orthologous to human NRF1 (nuclear respiratory factor 1); PARTICIPATES IN Huntington's disease pathway; INTERACTS WITH (+)-schisandrin B; (R)-noradrenaline; 17beta-estradiol.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: alpha palindromic-binding protein; alpha-pal; LOC312195; Nfe2l1_retired; NRF-1; nuclear factor (erythroid-derived 2)-like 1; nuclear respiratory factor-1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2458,664,932 - 58,772,328 (+)NCBI
Rnor_6.0 Ensembl457,378,069 - 57,445,341 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0457,335,732 - 57,445,317 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0457,097,471 - 57,207,118 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4456,949,553 - 57,048,149 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1457,267,163 - 57,331,137 (+)NCBI
Celera453,766,265 - 53,861,921 (+)NCBICelera
Cytogenetic Map4q22NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-schisandrin B  (EXP)
(R)-noradrenaline  (EXP)
1-chloro-2,4-dinitrobenzene  (ISO)
1-methyl-4-phenyl-1,2,3,6-tetrahydropyridine  (ISO)
17beta-estradiol  (EXP,ISO)
1H-[1,2,4]oxadiazolo[4,3-a]quinoxalin-1-one  (EXP,ISO)
2,3,7,8-tetrachlorodibenzodioxine  (ISO)
2,4-dinitrophenol  (ISO)
3'-amino-3'-deoxy-N(6),N(6)-dimethyladenosine  (EXP)
3,4-methylenedioxymethamphetamine  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
3-phenylprop-2-enal  (ISO)
4,4'-diaminodiphenylmethane  (ISO)
4-hydroxyphenyl retinamide  (ISO)
8-bromo-3',5'-cyclic GMP  (ISO)
acadesine  (ISO)
afimoxifene  (ISO)
aflatoxin B1  (ISO)
AICA ribonucleotide  (EXP)
all-trans-retinoic acid  (EXP)
alloxan  (EXP)
AM-251  (ISO)
ammonium chloride  (EXP)
antirheumatic drug  (ISO)
Aroclor 1254  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenous acid  (ISO)
atorvastatin calcium  (EXP)
atrazine  (EXP,ISO)
benzo[a]pyrene  (EXP,ISO)
benzo[a]pyrene diol epoxide I  (ISO)
bisphenol A  (EXP)
Butylbenzyl phthalate  (ISO)
cadmium atom  (EXP)
caffeine  (EXP)
calcitriol  (EXP)
carbon monoxide  (EXP,ISO)
CHIR 99021  (ISO)
cisplatin  (ISO)
copper atom  (EXP,ISO)
copper(0)  (EXP,ISO)
copper(II) sulfate  (ISO)
cyclosporin A  (ISO)
dexamethasone  (ISO)
diarsenic trioxide  (ISO)
dioxygen  (ISO)
dorsomorphin  (EXP)
doxorubicin  (ISO)
elemental selenium  (EXP)
enalapril  (EXP)
enniatin  (EXP)
enzyme inhibitor  (ISO)
Erythropoietin  (ISO)
ethidium  (ISO)
fenvalerate  (EXP)
fludioxonil  (ISO)
formaldehyde  (ISO)
fulvestrant  (ISO)
gamma-hexachlorocyclohexane  (ISO)
Genipin  (ISO)
hemin  (EXP)
hexadecanoic acid  (ISO)
hydrogen peroxide  (ISO)
indinavir  (ISO)
isoniazide  (ISO)
Licarin A  (ISO)
losartan  (EXP)
LY294002  (EXP,ISO)
manganese(II) chloride  (EXP)
melatonin  (EXP)
metformin  (ISO)
methamphetamine  (ISO)
methoxyacetic acid  (EXP)
methylglyoxal  (EXP)
methylmercury chloride  (EXP)
mitomycin C  (ISO)
monascin  (EXP)
mono(2-ethylhexyl) phthalate  (ISO)
Monobutylphthalate  (EXP)
N-acetyl-L-cysteine  (EXP)
N-methyl-4-phenylpyridinium  (ISO)
oleic acid  (ISO)
oxaliplatin  (EXP)
oxybenzone  (EXP)
ozone  (ISO)
p-toluidine  (EXP)
paracetamol  (ISO)
perfluorooctanoic acid  (EXP)
potassium chloride  (EXP)
pyrroloquinoline quinone  (ISO)
quercetin  (EXP)
raloxifene  (ISO)
reactive oxygen species  (ISO)
resveratrol  (EXP,ISO)
rotenone  (ISO)
selenium atom  (EXP)
sodium arsenite  (EXP,ISO)
sodium hydrogensulfite  (EXP)
Soman  (EXP)
stavudine  (ISO)
sulforaphane  (ISO)
sulfur dioxide  (EXP)
T-2 toxin  (EXP,ISO)
tetrachloromethane  (EXP)
thapsigargin  (ISO)
topotecan  (EXP)
trimellitic anhydride  (ISO)
Triptolide  (ISO)
triptonide  (ISO)
troglitazone  (EXP)
tunicamycin  (ISO)
uranium atom  (ISO)
urethane  (ISO)
valproic acid  (ISO)
zidovudine  (ISO)
zinc atom  (ISO)
zinc(0)  (ISO)

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
1. Chaturvedi RK, etal., Hum Mol Genet. 2010 Aug 15;19(16):3190-205. Epub 2010 Jun 7.
2. Chou YF, etal., J Nutr. 2007 Sep;137(9):2036-42.
3. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
4. GOA data from the GO Consortium
5. Hickson-Bick DL, etal., J Mol Cell Cardiol. 2008 Feb;44(2):411-8. Epub 2007 Dec 11.
6. Jaiswal AK Free Radic Biol Med 2004 May 15;36(10):1199-207.
7. Koyama H, etal., Biochem Biophys Res Commun. 1998 Feb 24;243(3):858-61.
8. Lee HM, etal., Free Radic Biol Med. 2008 Mar 1;44(5):807-14. Epub 2007 Nov 21.
9. MGD data from the GO Consortium
10. Pipeline to import KEGG annotations from KEGG into RGD
11. RGD automated data pipeline
12. RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
13. RGD automated import pipeline for gene-chemical interactions
14. RGD comprehensive gene curation
15. Stirone C, etal., Mol Pharmacol. 2005 Oct;68(4):959-65. Epub 2005 Jun 30.
16. Suliman HB, etal., J Biol Chem 2003 Oct 17;278(42):41510-8. Epub 2003 Aug 05.
17. Taherzadeh-Fard E, etal., Mol Neurodegener. 2011 May 19;6(1):32.
18. Xia Y, etal., J Biol Chem. 1998 May 15;273(20):12593-8.
19. Yang SJ, etal., Neuroscience. 2006 Sep 1;141(3):1181-92. Epub 2006 Jun 6.
20. Yin W, etal., Stroke. 2008 Nov;39(11):3057-63. Epub 2008 Aug 21.
21. Zungu M, etal., Am J Physiol Heart Circ Physiol. 2007 Nov;293(5):H2819-25. Epub 2007 Aug 17.
Additional References at PubMed
PMID:7629110   PMID:11134326   PMID:12477932   PMID:15384421   PMID:16230352   PMID:18252725   PMID:18990090   PMID:19056867   PMID:19615412   PMID:19674972   PMID:20438809   PMID:21609285  
PMID:23359427   PMID:23525105   PMID:26202310   PMID:27634749   PMID:28263745   PMID:28903152   PMID:30628711   PMID:31028793   PMID:31942725   PMID:32016449  


Genomics

Comparative Map Data
Nrf1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2458,664,932 - 58,772,328 (+)NCBI
Rnor_6.0 Ensembl457,378,069 - 57,445,341 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0457,335,732 - 57,445,317 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0457,097,471 - 57,207,118 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4456,949,553 - 57,048,149 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1457,267,163 - 57,331,137 (+)NCBI
Celera453,766,265 - 53,861,921 (+)NCBICelera
Cytogenetic Map4q22NCBI
NRF1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl7129,611,720 - 129,757,082 (+)EnsemblGRCh38hg38GRCh38
GRCh387129,611,720 - 129,757,076 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh377129,251,561 - 129,396,916 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 367129,038,791 - 129,184,158 (+)NCBINCBI36hg18NCBI36
Build 347128,845,547 - 128,989,805NCBI
Celera7124,047,294 - 124,192,656 (+)NCBI
Cytogenetic Map7q32.2NCBI
HuRef7123,613,242 - 123,758,239 (+)NCBIHuRef
CHM1_17129,185,024 - 129,330,325 (+)NCBICHM1_1
CRA_TCAGchr7v27128,635,837 - 128,781,204 (+)NCBI
Nrf1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39630,047,984 - 30,153,457 (+)NCBIGRCm39mm39
GRCm39 Ensembl630,047,987 - 30,153,457 (+)Ensembl
GRCm38630,047,985 - 30,153,458 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl630,047,988 - 30,153,458 (+)EnsemblGRCm38mm10GRCm38
MGSCv37629,997,988 - 30,103,458 (+)NCBIGRCm37mm9NCBIm37
MGSCv36629,997,998 - 30,103,468 (+)NCBImm8
Celera630,053,407 - 30,160,369 (+)NCBICelera
Cytogenetic Map6A3.3NCBI
cM Map612.47NCBI
Nrf1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495547910,324,443 - 10,472,875 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495547910,325,214 - 10,471,421 (+)NCBIChiLan1.0ChiLan1.0
NRF1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.17134,095,925 - 134,240,158 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl7134,113,482 - 134,240,158 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v07121,574,061 - 121,719,604 (+)NCBIMhudiblu_PPA_v0panPan3
NRF1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1147,085,018 - 7,218,802 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl147,085,791 - 7,193,034 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha146,770,310 - 6,906,180 (-)NCBI
ROS_Cfam_1.0146,848,014 - 6,983,992 (-)NCBI
UMICH_Zoey_3.1147,053,598 - 7,189,532 (-)NCBI
UNSW_CanFamBas_1.0146,795,757 - 6,931,636 (-)NCBI
UU_Cfam_GSD_1.0146,940,039 - 7,075,975 (-)NCBI
Nrf1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440511825,291,442 - 25,427,802 (-)NCBI
SpeTri2.0NW_0049365795,424,049 - 5,560,355 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NRF1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1818,998,905 - 19,142,628 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11819,008,408 - 19,142,678 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
NRF1
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12198,227,088 - 98,377,095 (+)NCBI
ChlSab1.1 Ensembl2198,268,395 - 98,377,096 (+)Ensembl
Vero_WHO_p1.0NW_0236660425,026,792 - 5,175,767 (-)NCBI
Nrf1
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247836,488,653 - 6,654,304 (-)NCBI

Position Markers
PMC97559P1  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2458,738,247 - 58,738,366 (+)MAPPER
Rnor_6.0457,412,609 - 57,412,727NCBIRnor6.0
Rnor_5.0457,174,410 - 57,174,528UniSTSRnor5.0
RGSC_v3.4457,024,097 - 57,024,215UniSTSRGSC3.4
Celera453,837,869 - 53,837,987UniSTS
Cytogenetic Map4q22UniSTS
RH130830  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2458,770,406 - 58,770,609 (+)MAPPER
Rnor_6.0457,444,990 - 57,445,192NCBIRnor6.0
Rnor_5.0457,206,791 - 57,206,993UniSTSRnor5.0
RGSC_v3.4457,056,254 - 57,056,456UniSTSRGSC3.4
Celera453,870,026 - 53,870,228UniSTS
RH 3.4 Map4308.6UniSTS
Cytogenetic Map4q22UniSTS
BF387640  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2458,693,032 - 58,693,202 (+)MAPPER
Rnor_6.0457,365,413 - 57,365,582NCBIRnor6.0
Rnor_5.0457,127,146 - 57,127,315UniSTSRnor5.0
RGSC_v3.4456,978,292 - 56,978,461UniSTSRGSC3.4
Celera453,794,310 - 53,794,479UniSTS
RH 3.4 Map4320.4UniSTS
Cytogenetic Map4q22UniSTS
RH127210  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2458,747,930 - 58,748,168 (+)MAPPER
Rnor_6.0457,422,291 - 57,422,528NCBIRnor6.0
Rnor_5.0457,184,092 - 57,184,329UniSTSRnor5.0
RGSC_v3.4457,033,780 - 57,034,017UniSTSRGSC3.4
Celera453,847,552 - 53,847,789UniSTS
Cytogenetic Map4q22UniSTS
RH136651  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2458,687,752 - 58,687,946 (+)MAPPER
Rnor_6.0457,360,134 - 57,360,327NCBIRnor6.0
Rnor_5.0457,121,867 - 57,122,060UniSTSRnor5.0
RGSC_v3.4456,972,319 - 56,972,512UniSTSRGSC3.4
Celera453,789,031 - 53,789,224UniSTS
RH 3.4 Map4318.6UniSTS
Cytogenetic Map4q22UniSTS
BE096654  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2458,758,309 - 58,758,508 (+)MAPPER
Rnor_6.0457,432,894 - 57,433,092NCBIRnor6.0
Rnor_5.0457,194,695 - 57,194,893UniSTSRnor5.0
RGSC_v3.4457,044,158 - 57,044,356UniSTSRGSC3.4
Celera453,857,930 - 53,858,128UniSTS
RH 3.4 Map4310.1UniSTS
Cytogenetic Map4q22UniSTS


QTLs in Region (Rnor_6.0)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
619616Bp79Blood pressure QTL 790.0292arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)4304323179575658Rat
2303168Bp330Blood pressure QTL 3304.250.017arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)43043231145254791Rat
1358203Stl19Serum triglyceride level QTL 192.80.002blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)4304401764915903Rat
631261Tcas3Tongue tumor susceptibility QTL 36.88tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)4734240492484039Rat
2316958Gluco58Glucose level QTL 5810blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)47850904182171018Rat
2303585Bw86Body weight QTL 864body mass (VT:0001259)body weight (CMO:0000012)41263897457638974Rat
7387227Uae40Urinary albumin excretion QTL 402.90.0052urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)41614994161149941Rat
61412Pia2Pristane induced arthritis QTL 23.9joint integrity trait (VT:0010548)post-insult time to onset of experimental arthritis (CMO:0001450)41822218761039065Rat
10755501Bp390Blood pressure QTL 3902.5arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)423850384169318094Rat
6909122Insul22Insulin level QTL 224.63blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)42399172176238799Rat
6909128Pancm4Pancreatic morphology QTL 411.35pancreas mass (VT:0010144)pancreas wet weight (CMO:0000626)42399172176238799Rat
1578655Bmd11Bone mineral density QTL 1111femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)42463187469631874Rat
8655906Rf60Renal function QTL 603.8blood creatinine amount (VT:0005328)creatinine clearance (CMO:0000765)42665474981874227Rat
12798520Anxrr55Anxiety related response QTL 554.450.01locomotor behavior trait (VT:0001392)number of rearing movements with lid-pushing in an experimental apparatus (CMO:0002715)429549895112807890Rat
8552782Vie1Viral induced encephalitis QTL 126.4brain integrity trait (VT:0010579)encephalitis incidence/prevalence measurement (CMO:0002361)43182556083531021Rat
8552801Bw143Body weight QTL 1437.3body mass (VT:0001259)change in body weight to body weight ratio (CMO:0002216)43182556083531021Rat
8552809Vie5Viral induced encephalitis QTL 525.3brain integrity trait (VT:0010579)encephalitis incidence/prevalence measurement (CMO:0002361)43182556083531021Rat
2313401Anxrr27Anxiety related response QTL 27aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)43363780361708341Rat
8655961Kidm43Kidney mass QTL 4318kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)43427793299067150Rat
1358352Srcrt3Stress Responsive Cort QTL 32.29blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)436615599145611886Rat
61475Aia2Adjuvant induced arthritis QTL 25.8joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)43768517573066691Rat
1331807Rf31Renal function QTL 312.988urine potassium amount (VT:0010539)urine potassium level (CMO:0000128)43770327275345433Rat
1300139Hrtrt6Heart rate QTL 62.85heart pumping trait (VT:2000009)heart rate (CMO:0000002)437703272115372927Rat
61445Strs3Sensitivity to stroke QTL 33cerebrum integrity trait (VT:0010549)post-insult time to onset of cerebrovascular lesion (CMO:0002343)43920822284208222Rat
8694439Bw168Body weight QTL 1689.570.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)43920824784208247Rat
6893678Bw108Body weight QTL 1082.60.006body mass (VT:0001259)body weight (CMO:0000012)44241577787415777Rat
1576305Emca6Estrogen-induced mammary cancer QTL 65.8mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)443414605155469929Rat
1354660Salc1Saline consumption QTL 111.26drinking behavior trait (VT:0001422)saline drink intake rate (CMO:0001627)443414792146942075Rat
1354612Foco1Food consumption QTL 18.87eating behavior trait (VT:0001431)food intake rate (CMO:0000427)443414792146942075Rat
1298082Stresp4Stress response QTL 4blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)446898276145611886Rat
2312567Glom19Glomerulus QTL 191.90.006kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)449906054145611886Rat
4889969Bss96Bone structure and strength QTL 964.9tibia size trait (VT:0100001)tibia cortical bone volume (CMO:0001725)45532485779575658Rat
4889972Bss97Bone structure and strength QTL 975.6tibia size trait (VT:0100001)tibia total bone volume (CMO:0001724)45532485779575658Rat
5685009Bmd86Bone mineral density QTL 863.7tibia mineral mass (VT:1000283)bone mineral density (CMO:0001226)45532485779575658Rat
5685012Bmd87Bone mineral density QTL 875.1tibia mineral mass (VT:1000283)bone mineral content (CMO:0001554)45532485779575658Rat
70200Alc18Alcohol consumption QTL 189.2drinking behavior trait (VT:0001422)ethanol intake volume to total fluid intake volume ratio (CMO:0001591)455324953148360954Rat
1641833Alc21Alcohol consumption QTL 218.60.0001drinking behavior trait (VT:0001422)ethanol drink intake rate (CMO:0001407)455375865125671711Rat
634311Sach7Saccharin preference QTL 7taste sensitivity trait (VT:0001986)saccharin intake volume to total fluid intake volume ratio (CMO:0001601)45579156482134846Rat
631546Bp86Blood pressure QTL 863.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)45579156492484312Rat
61336Bp21Blood pressure QTL 214.6arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)45579183479557856Rat
1578657Bss12Bone structure and strength QTL 128.9femur morphology trait (VT:0000559)femoral neck cross-sectional area (CMO:0001697)456092756101092756Rat
1578658Bss13Bone structure and strength QTL 138femur strength trait (VT:0010010)femoral neck polar moment of inertia (CMO:0001670)456092756101092756Rat
1558651Swd3Spike wave discharge measurement QTL 34.620.000024brain electrophysiology trait (VT:0010557)brain spike-and-wave discharge frequency (CMO:0001742)45710107792990863Rat
631671Iddm11Insulin dependent diabetes mellitus QTL 113.60.0012blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)45730707579578854Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:13
Count of miRNA genes:12
Interacting mature miRNAs:13
Transcripts:ENSRNOT00000011851
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 26 35 22 19 22 1 1 61 25 34 11 1
Low 17 22 19 19 7 10 13 10 7 7
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000011851   ⟹   ENSRNOP00000011851
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl457,378,166 - 57,436,884 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000080173   ⟹   ENSRNOP00000075252
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl457,378,069 - 57,445,341 (+)Ensembl
RefSeq Acc Id: NM_001100708   ⟹   NP_001094178
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2458,664,990 - 58,762,302 (+)NCBI
Rnor_6.0457,336,665 - 57,436,885 (+)NCBI
Rnor_5.0457,097,471 - 57,207,118 (+)NCBI
RGSC_v3.4456,949,553 - 57,048,149 (+)RGD
Celera453,766,265 - 53,861,921 (+)RGD
Sequence:
RefSeq Acc Id: XM_006236198   ⟹   XP_006236260
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2458,664,932 - 58,772,328 (+)NCBI
Rnor_6.0457,335,735 - 57,445,317 (+)NCBI
Rnor_5.0457,097,471 - 57,207,118 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006236200   ⟹   XP_006236262
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2458,664,932 - 58,772,328 (+)NCBI
Rnor_6.0457,335,734 - 57,445,317 (+)NCBI
Rnor_5.0457,097,471 - 57,207,118 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008762772   ⟹   XP_008760994
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0457,385,588 - 57,436,888 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008762773   ⟹   XP_008760995
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0457,386,577 - 57,445,317 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017592611   ⟹   XP_017448100
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2458,664,932 - 58,762,302 (+)NCBI
Rnor_6.0457,335,733 - 57,436,888 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017592612   ⟹   XP_017448101
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2458,664,932 - 58,762,302 (+)NCBI
Rnor_6.0457,335,732 - 57,436,888 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039107511   ⟹   XP_038963439
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2458,664,932 - 58,772,328 (+)NCBI
RefSeq Acc Id: XM_039107512   ⟹   XP_038963440
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2458,664,932 - 58,749,461 (+)NCBI
RefSeq Acc Id: XM_039107513   ⟹   XP_038963441
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2458,664,932 - 58,762,015 (+)NCBI
RefSeq Acc Id: XM_039107514   ⟹   XP_038963442
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2458,664,932 - 58,749,461 (+)NCBI
Reference Sequences
RefSeq Acc Id: NP_001094178   ⟸   NM_001100708
- UniProtKB: B1WC04 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006236262   ⟸   XM_006236200
- Peptide Label: isoform X7
- Sequence:
RefSeq Acc Id: XP_006236260   ⟸   XM_006236198
- Peptide Label: isoform X3
- UniProtKB: A0A0G2KA43 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008760994   ⟸   XM_008762772
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_008760995   ⟸   XM_008762773
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_017448101   ⟸   XM_017592612
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_017448100   ⟸   XM_017592611
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: ENSRNOP00000075252   ⟸   ENSRNOT00000080173
RefSeq Acc Id: ENSRNOP00000011851   ⟸   ENSRNOT00000011851
RefSeq Acc Id: XP_038963439   ⟸   XM_039107511
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038963441   ⟸   XM_039107513
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038963440   ⟸   XM_039107512
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038963442   ⟸   XM_039107514
- Peptide Label: isoform X6
Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Strain Variation

Strain Sequence Variants (Rnor 6.0)
ACI/EurMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
ACI/EurMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
ACI/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
BBDP/Wor (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
BN/SsN (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
Buf/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
COP/CrCrl (MCW & UW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
University of Wisconsin (Dr. James Shull)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Charles River Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)
F344/NCrl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
F344/NRrrc (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
FHH/EurMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHH/EurMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
FHL/EurMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHL/EurMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
GH/OmrMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
GK/Ox (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LE/Stm (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/Crl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/NCrlBR (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LH/MavRrrc (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LL/MavRrrc (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LN/MavRrrc (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
M520/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
MHS/Gib (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MNS/Gib (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MR/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
SBH/Ygl (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBH/Ygl sequenced by MCW
SBH/Ygl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SBN/Ygl (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBN/Ygl sequenced by MCW
SBN/Ygl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHR/NHsd (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHRSP/Gcrc (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SR/JrHsd (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Harlan Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SR/JrHsd (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/Jr (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/JrHsdMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SS/JrHsdMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WAG/Rij (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/Gcrc (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
WKY/NCrl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/NHsd (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WN/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1304603 AgrOrtholog
Ensembl Genes ENSRNOG00000008752 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000011851 ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOP00000075252 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000011851 ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOT00000080173 UniProtKB/TrEMBL
Gene3D-CATH 3.10.20.30 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:9027258 IMAGE-MGC_LOAD
InterPro Beta-grasp_dom UniProtKB/TrEMBL
  DUF933 UniProtKB/TrEMBL
  NRF1/Ewg UniProtKB/TrEMBL
  Nrf1_activation-bd UniProtKB/TrEMBL
  Nrf1_NLS/DNA-bd_dimer UniProtKB/TrEMBL
  TGS-like UniProtKB/TrEMBL
KEGG Report rno:312195 UniProtKB/TrEMBL
MGC_CLONE MGC:187757 IMAGE-MGC_LOAD
NCBI Gene 312195 ENTREZGENE
PANTHER PTHR20338 UniProtKB/TrEMBL
Pfam Nrf1_activ_bdg UniProtKB/TrEMBL
  Nrf1_DNA-bind UniProtKB/TrEMBL
  YchF-GTPase_C UniProtKB/TrEMBL
PhenoGen Nrf1 PhenoGen
Superfamily-SCOP TGS-like UniProtKB/TrEMBL
UniProt A0A0G2KA43 ENTREZGENE, UniProtKB/TrEMBL
  B1WC04 ENTREZGENE, UniProtKB/TrEMBL
  NRF1_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-04-30 Nrf1  nuclear respiratory factor 1   Nrf1_predicted  nuclear respiratory factor 1 (predicted)  'predicted' is removed 2292626 APPROVED
2007-01-31 Nrf1_predicted  nuclear respiratory factor 1 (predicted)  Nfe2l1_retired  nuclear factor (erythroid-derived 2)-like 1  Data Merged 737654 APPROVED
2007-01-31 Nfe2l1_retired    Nfe2l1  nuclear factor (erythroid-derived 2)-like 1  Symbol updated 1299863 PROVISIONAL
2005-10-12 Nfe2l1        Symbol and Name status set to provisional 70820 PROVISIONAL
2005-01-12 Nrf1_predicted  nuclear respiratory factor 1 (predicted)      Symbol and Name status set to approved 70820 APPROVED