Nrf1 (nuclear respiratory factor 1) - Rat Genome Database

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Gene: Nrf1 (nuclear respiratory factor 1) Rattus norvegicus
Analyze
Symbol: Nrf1
Name: nuclear respiratory factor 1
RGD ID: 1304603
Description: Predicted to enable DNA-binding transcription activator activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Involved in several processes, including animal organ regeneration; response to estradiol; and response to lipopolysaccharide. Predicted to be located in cytosol and nucleoplasm. Biomarker of obesity. Human ortholog(s) of this gene implicated in Huntington's disease. Orthologous to human NRF1 (nuclear respiratory factor 1); PARTICIPATES IN Huntington's disease pathway; INTERACTS WITH (+)-schisandrin B; (R)-noradrenaline; 17beta-estradiol.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: alpha palindromic-binding protein; alpha-pal; LOC312195; Nfe2l1_retired; NRF-1; nuclear factor (erythroid-derived 2)-like 1; nuclear respiratory factor-1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8459,632,366 - 59,738,166 (+)NCBIGRCr8
mRatBN7.2458,664,932 - 58,772,328 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl458,664,957 - 58,825,328 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx463,642,477 - 63,739,391 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0459,558,637 - 59,655,557 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0457,960,536 - 58,057,462 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0457,335,732 - 57,445,317 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl457,378,069 - 57,445,341 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0457,097,471 - 57,207,118 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4456,949,553 - 57,048,149 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1457,267,163 - 57,331,137 (+)NCBI
Celera453,766,265 - 53,861,921 (+)NCBICelera
Cytogenetic Map4q22NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model



  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Nrf1RatBrain Hypoxia-Ischemia  IEP 2302400mRNA and protein:increase expression:cerebral cortexRGD 
Nrf1RatHuntington's disease onsetISONRF1 (Homo sapiens)6770890DNA:SNPs: :rs6949152 and rs7781972 (human)RGD 
Nrf1RatHuntington's disease  ISONrf1 (Mus musculus)6771173mRNA:decreased expression:striatumRGD 
Nrf1RatHypoxia treatmentIEP 329955450mRNA:decreased expression:left ventricle myocardium (rat)RGD 
Nrf1Ratobesity treatmentIEP 329955450mRNA:decreased expression:left ventricle myocardium (rat)RGD 
Nrf1RatRight Ventricular Hypertrophy  IEP 2302404mRNA:increased expression:hear right ventricleRGD 
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Nrf1Ratpleomorphic xanthoastrocytoma  ISONRF1 (Homo sapiens)8554872ClinVar Annotator: match by term: Pleomorphic xanthoastrocytomaClinVarPMID:28299358
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Nrf1Ratamyotrophic lateral sclerosis  ISONRF1 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:22975021
Nrf1RatBowen's Disease  ISONRF1 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:21514422

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Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Nrf1Rat(+)-schisandrin B multiple interactionsEXP 6480464schizandrin B inhibits the reaction [Carbon Tetrachloride results in increased expression of NRF1 mRNA]CTDPMID:31150632
Nrf1Rat(R)-noradrenaline multiple interactionsEXP 6480464[Estradiol co-treated with Norepinephrine] results in decreased expression of NRF1 mRNACTDPMID:16954335
Nrf1Rat1-chloro-2,4-dinitrobenzene decreases expressionISONrf1 (Mus musculus)6480464Dinitrochlorobenzene results in decreased expression of NRF1 mRNACTDPMID:28219650
Nrf1Rat1-methyl-4-phenyl-1,2,3,6-tetrahydropyridine decreases expressionISONrf1 (Mus musculus)64804641-Methyl-4-phenyl-1 more ...CTDPMID:21856379
Nrf1Rat17beta-estradiol multiple interactionsISONRF1 (Homo sapiens)6480464ESR1 protein alternative form inhibits the reaction [Estradiol results in increased expression of NRF1 mRNA] more ...CTDPMID:20302909 and PMID:22105178
Nrf1Rat17beta-estradiol increases expressionISONRF1 (Homo sapiens)6480464Estradiol results in increased expression of NRF1 mRNACTDPMID:20302909 more ...
Nrf1Rat17beta-estradiol multiple interactionsEXP 6480464[Estradiol co-treated with Norepinephrine] results in decreased expression of NRF1 mRNACTDPMID:16954335
Nrf1Rat1H-[1,2,4]oxadiazolo[4,3-a]quinoxalin-1-one multiple interactionsISONRF1 (Homo sapiens)64804641H-(1 more ...CTDPMID:24041027
Nrf1Rat1H-[1,2,4]oxadiazolo[4,3-a]quinoxalin-1-one multiple interactionsEXP 64804641H-(1 more ...CTDPMID:17179207
Nrf1Rat2,2',4,4'-Tetrabromodiphenyl ether decreases expressionEXP 64804642 more ...CTDPMID:36269211
Nrf1Rat2,2',4,4'-Tetrabromodiphenyl ether multiple interactionsEXP 6480464MIR128-1 promotes the reaction [2 more ...CTDPMID:36269211
Nrf1Rat2,3,7,8-tetrachlorodibenzodioxine affects expressionISONrf1 (Mus musculus)6480464Tetrachlorodibenzodioxin affects the expression of NRF1 mRNACTDPMID:21570461 and PMID:24058054
Nrf1Rat2,3,7,8-tetrachlorodibenzodioxine increases expressionISONRF1 (Homo sapiens)6480464Tetrachlorodibenzodioxin results in increased expression of NRF1 mRNACTDPMID:21296121
Nrf1Rat2,3-bis(4-hydroxyphenyl)propionitrile increases expressionISONRF1 (Homo sapiens)64804642 and 3-bis(4-hydroxyphenyl)-propionitrile results in increased expression of NRF1 mRNACTDPMID:22105178
Nrf1Rat2,4-dinitrophenol increases expressionISONrf1 (Mus musculus)64804642 and 4-Dinitrophenol results in increased expression of NRF1 mRNACTDPMID:11784294
Nrf1Rat3'-amino-3'-deoxy-N(6),N(6)-dimethyladenosine affects expressionEXP 6480464Puromycin Aminonucleoside affects the expression of NRF1 mRNACTDPMID:16609681
Nrf1Rat3,4-methylenedioxymethamphetamine increases expressionISONrf1 (Mus musculus)6480464N-Methyl-3 and 4-methylenedioxyamphetamine results in increased expression of NRF1 mRNACTDPMID:20188158
Nrf1Rat3-isobutyl-1-methyl-7H-xanthine multiple interactionsISONrf1 (Mus musculus)6480464[licarin A affects the susceptibility to [INS protein co-treated with 1-Methyl-3-isobutylxanthine co-treated with Dexamethasone]] which results in increased expression of NRF1 mRNA more ...CTDPMID:29288687 and PMID:32417366
Nrf1Rat3-phenylprop-2-enal decreases expressionISONrf1 (Mus musculus)6480464cinnamaldehyde results in decreased expression of NRF1 mRNACTDPMID:28219650
Nrf1Rat4,4'-diaminodiphenylmethane affects expressionISONrf1 (Mus musculus)64804644 and 4'-diaminodiphenylmethane affects the expression of NRF1 mRNACTDPMID:18648102

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Biological Process
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Cellular Component

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Nrf1Ratcytosol located_inIEAUniProtKB:Q16656 and ensembl:ENSP000003769241600115GO_REF:0000107EnsemblGO_REF:0000107
Nrf1Ratcytosol located_inISONRF1 (Homo sapiens) more ...1624291 RGDGO_REF:0000052
Nrf1Ratnucleoplasm located_inIEAUniProtKB:Q16656 and ensembl:ENSP000003769241600115GO_REF:0000107EnsemblGO_REF:0000107
Nrf1Ratnucleoplasm located_inISONRF1 (Homo sapiens) more ...1624291 RGDGO_REF:0000052
Nrf1Ratnucleus located_inIEAUniProtKB-KW:KW-05391600115GO_REF:0000043UniProtGO_REF:0000043
Nrf1Ratnucleus located_inIEAUniProtKB-SubCell:SL-01911600115GO_REF:0000044UniProtGO_REF:0000044

Molecular Function
1 to 9 of 9 rows

  
1 to 9 of 9 rows

Imported Annotations - KEGG (archival)

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Nrf1RatHuntington's disease pathway   IEA 6907045 KEGGrno:05016

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#
Reference Title
Reference Citation
1. Impairment of PGC-1alpha expression, neuropathology and hepatic steatosis in a transgenic mouse model of Huntington's disease following chronic energy deprivation. Chaturvedi RK, etal., Hum Mol Genet. 2010 Aug 15;19(16):3190-205. Epub 2010 Jun 7.
2. Changes in mitochondrial DNA deletion, content, and biogenesis in folate-deficient tissues of young rats depend on mitochondrial folate and oxidative DNA injuries. Chou YF, etal., J Nutr. 2007 Sep;137(9):2036-42.
3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
4. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
5. Stimulation of mitochondrial biogenesis and autophagy by lipopolysaccharide in the neonatal rat cardiomyocyte protects against programmed cell death. Hickson-Bick DL, etal., J Mol Cell Cardiol. 2008 Feb;44(2):411-8. Epub 2007 Dec 11.
6. Nrf2 signaling in coordinated activation of antioxidant gene expression. Jaiswal AK Free Radic Biol Med 2004 May 15;36(10):1199-207.
7. Increases in the mitochondrial DNA replication and transcription in the remnant liver of rats. Koyama H, etal., Biochem Biophys Res Commun. 1998 Feb 24;243(3):858-61.
8. Sustained hypoxia modulates mitochondrial DNA content in the neonatal rat brain. Lee HM, etal., Free Radic Biol Med. 2008 Mar 1;44(5):807-14. Epub 2007 Nov 21.
9. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
10. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
11. GOA pipeline RGD automated data pipeline
12. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
13. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
14. Comprehensive gene review and curation RGD comprehensive gene curation
15. Estrogen increases mitochondrial efficiency and reduces oxidative stress in cerebral blood vessels. Stirone C, etal., Mol Pharmacol. 2005 Oct;68(4):959-65. Epub 2005 Jun 30.
16. Lipopolysaccharide stimulates mitochondrial biogenesis via activation of nuclear respiratory factor-1. Suliman HB, etal., J Biol Chem 2003 Oct 17;278(42):41510-8. Epub 2003 Aug 05.
17. PGC-1alpha downstream transcription factors NRF-1 and TFAM are genetic modifiers of Huntington disease. Taherzadeh-Fard E, etal., Mol Neurodegener. 2011 May 19;6(1):32.
18. Activation of the cytochrome c gene by electrical stimulation in neonatal rat cardiac myocytes. Role of NRF-1 and c-Jun. Xia Y, etal., J Biol Chem. 1998 May 15;273(20):12593-8.
19. WY14643 improves left ventricular myocardial mitochondrial and systolic functions in obese rats under chronic persistent hypoxia via the PPARα pathway. Yan J, etal., Life Sci. 2021 Feb 1;266:118888. doi: 10.1016/j.lfs.2020.118888. Epub 2020 Dec 10.
20. Activity-dependent transcriptional regulation of nuclear respiratory factor-1 in cultured rat visual cortical neurons. Yang SJ, etal., Neuroscience. 2006 Sep 1;141(3):1181-92. Epub 2006 Jun 6.
1 to 20 of 22 rows
PMID:7629110   PMID:11134326   PMID:12477932   PMID:15384421   PMID:16230352   PMID:18252725   PMID:18990090   PMID:19056867   PMID:19615412   PMID:19674972   PMID:20438809   PMID:21609285  
PMID:23359427   PMID:23525105   PMID:26202310   PMID:27634749   PMID:28263745   PMID:28903152   PMID:30628711   PMID:31028793   PMID:31942725   PMID:32016449   PMID:33475136   PMID:33582931  
PMID:33913583   PMID:35180801   PMID:35569770  



Nrf1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8459,632,366 - 59,738,166 (+)NCBIGRCr8
mRatBN7.2458,664,932 - 58,772,328 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl458,664,957 - 58,825,328 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx463,642,477 - 63,739,391 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0459,558,637 - 59,655,557 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0457,960,536 - 58,057,462 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0457,335,732 - 57,445,317 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl457,378,069 - 57,445,341 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0457,097,471 - 57,207,118 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4456,949,553 - 57,048,149 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1457,267,163 - 57,331,137 (+)NCBI
Celera453,766,265 - 53,861,921 (+)NCBICelera
Cytogenetic Map4q22NCBI
NRF1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh387129,611,720 - 129,757,076 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl7129,611,720 - 129,757,082 (+)EnsemblGRCh38hg38GRCh38
GRCh377129,251,561 - 129,396,916 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 367129,038,791 - 129,184,158 (+)NCBINCBI36Build 36hg18NCBI36
Build 347128,845,547 - 128,989,805NCBI
Celera7124,047,294 - 124,192,656 (+)NCBICelera
Cytogenetic Map7q32.2NCBI
HuRef7123,613,242 - 123,758,239 (+)NCBIHuRef
CHM1_17129,185,036 - 129,330,325 (+)NCBICHM1_1
T2T-CHM13v2.07130,924,847 - 131,070,183 (+)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v27128,635,837 - 128,781,204 (+)NCBI
Nrf1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39630,047,984 - 30,153,462 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl630,047,987 - 30,153,457 (+)EnsemblGRCm39 Ensembl
GRCm38630,047,985 - 30,153,458 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl630,047,988 - 30,153,458 (+)EnsemblGRCm38mm10GRCm38
MGSCv37629,997,988 - 30,103,458 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36629,997,998 - 30,103,468 (+)NCBIMGSCv36mm8
Celera630,053,407 - 30,160,369 (+)NCBICelera
Cytogenetic Map6A3.3NCBI
cM Map612.47NCBI
Nrf1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495547910,324,443 - 10,472,875 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495547910,325,214 - 10,471,421 (+)NCBIChiLan1.0ChiLan1.0
NRF1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v26166,429,088 - 166,574,279 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1718,439,333 - 18,584,524 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v07121,574,061 - 121,719,604 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.17134,095,925 - 134,240,158 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl7134,113,482 - 134,240,158 (+)Ensemblpanpan1.1panPan2
NRF1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1147,085,018 - 7,218,802 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl147,085,791 - 7,193,034 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha146,770,310 - 6,906,180 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0146,848,014 - 6,983,992 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl146,848,018 - 6,983,930 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1147,053,598 - 7,189,532 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0146,795,757 - 6,931,636 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0146,940,039 - 7,075,975 (-)NCBIUU_Cfam_GSD_1.0
Nrf1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440511825,291,442 - 25,427,802 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365795,423,773 - 5,561,003 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365795,424,049 - 5,560,355 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NRF1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1818,998,930 - 19,142,628 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11819,008,408 - 19,142,678 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
NRF1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12198,227,088 - 98,377,095 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2198,268,395 - 98,377,096 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660425,026,792 - 5,175,767 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Nrf1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247836,488,380 - 6,602,250 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247836,488,653 - 6,654,304 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

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Variants in Nrf1
683 total Variants

Predicted Target Of
Summary Value
Count of predictions:13
Count of miRNA genes:12
Interacting mature miRNAs:13
Transcripts:ENSRNOT00000011851
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 42 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
2303585Bw86Body weight QTL 864body mass (VT:0001259)body weight (CMO:0000012)41467806559678065Rat
5685012Bmd87Bone mineral density QTL 875.1tibia mineral mass (VT:1000283)bone mineral content (CMO:0001554)45664777678882945Rat
1358352Srcrt3Stress Responsive Cort QTL 32.29blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)438465774146803430Rat
61445Strs3Sensitivity to stroke QTL 33cerebrum integrity trait (VT:0010549)post-insult time to onset of cerebrovascular lesion (CMO:0002343)44043338885433388Rat
6893678Bw108Body weight QTL 1082.60.006body mass (VT:0001259)body weight (CMO:0000012)44345797688457976Rat
5685009Bmd86Bone mineral density QTL 863.7tibia mineral mass (VT:1000283)bone mineral density (CMO:0001226)45664777678882945Rat
10755501Bp390Blood pressure QTL 3902.5arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)426775591168368347Rat
1331807Rf31Renal function QTL 312.988urine potassium amount (VT:0010539)urine potassium level (CMO:0000128)43952426474726312Rat
8552782Vie1Viral induced encephalitis QTL 126.4brain integrity trait (VT:0010579)encephalitis incidence/prevalence measurement (CMO:0002361)43443048482490359Rat
634311Sach7Saccharin preference QTL 7taste sensitivity trait (VT:0001986)saccharin intake volume to total fluid intake volume ratio (CMO:0001601)45711443281266970Rat

1 to 10 of 42 rows
PMC97559P1  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2458,738,247 - 58,738,366 (+)MAPPERmRatBN7.2
Rnor_6.0457,412,609 - 57,412,727NCBIRnor6.0
Rnor_5.0457,174,410 - 57,174,528UniSTSRnor5.0
RGSC_v3.4457,024,097 - 57,024,215UniSTSRGSC3.4
Celera453,837,869 - 53,837,987UniSTS
Cytogenetic Map4q22UniSTS
RH130830  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2458,770,406 - 58,770,609 (+)MAPPERmRatBN7.2
Rnor_6.0457,444,990 - 57,445,192NCBIRnor6.0
Rnor_5.0457,206,791 - 57,206,993UniSTSRnor5.0
RGSC_v3.4457,056,254 - 57,056,456UniSTSRGSC3.4
Celera453,870,026 - 53,870,228UniSTS
RH 3.4 Map4308.6UniSTS
Cytogenetic Map4q22UniSTS
BF387640  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2458,693,032 - 58,693,202 (+)MAPPERmRatBN7.2
Rnor_6.0457,365,413 - 57,365,582NCBIRnor6.0
Rnor_5.0457,127,146 - 57,127,315UniSTSRnor5.0
RGSC_v3.4456,978,292 - 56,978,461UniSTSRGSC3.4
Celera453,794,310 - 53,794,479UniSTS
RH 3.4 Map4320.4UniSTS
Cytogenetic Map4q22UniSTS
RH127210  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2458,747,930 - 58,748,168 (+)MAPPERmRatBN7.2
Rnor_6.0457,422,291 - 57,422,528NCBIRnor6.0
Rnor_5.0457,184,092 - 57,184,329UniSTSRnor5.0
RGSC_v3.4457,033,780 - 57,034,017UniSTSRGSC3.4
Celera453,847,552 - 53,847,789UniSTS
Cytogenetic Map4q22UniSTS
RH136651  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2458,687,752 - 58,687,946 (+)MAPPERmRatBN7.2
Rnor_6.0457,360,134 - 57,360,327NCBIRnor6.0
Rnor_5.0457,121,867 - 57,122,060UniSTSRnor5.0
RGSC_v3.4456,972,319 - 56,972,512UniSTSRGSC3.4
Celera453,789,031 - 53,789,224UniSTS
RH 3.4 Map4318.6UniSTS
Cytogenetic Map4q22UniSTS
BE096654  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2458,758,309 - 58,758,508 (+)MAPPERmRatBN7.2
Rnor_6.0457,432,894 - 57,433,092NCBIRnor6.0
Rnor_5.0457,194,695 - 57,194,893UniSTSRnor5.0
RGSC_v3.4457,044,158 - 57,044,356UniSTSRGSC3.4
Celera453,857,930 - 53,858,128UniSTS
RH 3.4 Map4310.1UniSTS
Cytogenetic Map4q22UniSTS




alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31


1 to 19 of 19 rows
RefSeq Transcripts NM_001100708 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006236198 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006236200 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008762772 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008762773 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017592611 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017592612 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039107511 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039107512 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039107513 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039107514 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063285982 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063285983 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063285984 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063285985 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide BC161956 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473959 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000004 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U27700 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
1 to 19 of 19 rows

Ensembl Acc Id: ENSRNOT00000011851   ⟹   ENSRNOP00000011851
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl458,664,963 - 58,762,301 (+)Ensembl
Rnor_6.0 Ensembl457,378,166 - 57,436,884 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000080173   ⟹   ENSRNOP00000075252
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl458,704,418 - 58,770,665 (+)Ensembl
Rnor_6.0 Ensembl457,378,069 - 57,445,341 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000103272   ⟹   ENSRNOP00000082521
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl458,711,626 - 58,741,228 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000104816   ⟹   ENSRNOP00000079043
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl458,664,957 - 58,769,017 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000105926   ⟹   ENSRNOP00000096374
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl458,664,957 - 58,741,228 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000115640   ⟹   ENSRNOP00000083755
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl458,664,979 - 58,748,363 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000117472   ⟹   ENSRNOP00000094397
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl458,664,957 - 58,762,153 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000118984   ⟹   ENSRNOP00000091041
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl458,711,626 - 58,825,328 (+)Ensembl
RefSeq Acc Id: NM_001100708   ⟹   NP_001094178
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8459,632,426 - 59,729,734 (+)NCBI
mRatBN7.2458,664,990 - 58,762,302 (+)NCBI
Rnor_6.0457,336,665 - 57,436,885 (+)NCBI
Rnor_5.0457,097,471 - 57,207,118 (+)NCBI
RGSC_v3.4456,949,553 - 57,048,149 (+)RGD
Celera453,766,265 - 53,861,921 (+)RGD
Sequence:
RefSeq Acc Id: XM_006236198   ⟹   XP_006236260
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8459,632,366 - 59,738,166 (+)NCBI
mRatBN7.2458,664,932 - 58,772,328 (+)NCBI
Rnor_6.0457,335,735 - 57,445,317 (+)NCBI
Rnor_5.0457,097,471 - 57,207,118 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006236200   ⟹   XP_006236262
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8459,632,366 - 59,738,166 (+)NCBI
mRatBN7.2458,664,932 - 58,772,328 (+)NCBI
Rnor_6.0457,335,734 - 57,445,317 (+)NCBI
Rnor_5.0457,097,471 - 57,207,118 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017592611   ⟹   XP_017448100
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8459,632,366 - 59,729,740 (+)NCBI
mRatBN7.2458,664,932 - 58,762,302 (+)NCBI
Rnor_6.0457,335,733 - 57,436,888 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017592612   ⟹   XP_017448101
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8459,632,366 - 59,729,740 (+)NCBI
mRatBN7.2458,664,932 - 58,762,302 (+)NCBI
Rnor_6.0457,335,732 - 57,436,888 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039107511   ⟹   XP_038963439
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8459,632,366 - 59,738,166 (+)NCBI
mRatBN7.2458,664,932 - 58,772,328 (+)NCBI
RefSeq Acc Id: XM_039107512   ⟹   XP_038963440
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8459,632,366 - 59,722,681 (+)NCBI
mRatBN7.2458,664,932 - 58,749,461 (+)NCBI
RefSeq Acc Id: XM_039107513   ⟹   XP_038963441
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8459,632,366 - 59,729,541 (+)NCBI
mRatBN7.2458,664,932 - 58,762,015 (+)NCBI
RefSeq Acc Id: XM_039107514   ⟹   XP_038963442
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8459,632,366 - 59,722,681 (+)NCBI
mRatBN7.2458,664,932 - 58,749,461 (+)NCBI
RefSeq Acc Id: XM_063285982   ⟹   XP_063142052
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8459,632,366 - 59,729,740 (+)NCBI
RefSeq Acc Id: XM_063285983   ⟹   XP_063142053
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8459,632,366 - 59,738,166 (+)NCBI
RefSeq Acc Id: XM_063285984   ⟹   XP_063142054
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8459,632,366 - 59,738,166 (+)NCBI
RefSeq Acc Id: XM_063285985   ⟹   XP_063142055
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8459,632,366 - 59,722,681 (+)NCBI
1 to 5 of 21 rows
1 to 5 of 21 rows
RefSeq Acc Id: NP_001094178   ⟸   NM_001100708
- UniProtKB: B1WC04 (UniProtKB/TrEMBL),   A6IEF3 (UniProtKB/TrEMBL),   F7FCI9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006236262   ⟸   XM_006236200
- Peptide Label: isoform X8
- Sequence:
RefSeq Acc Id: XP_006236260   ⟸   XM_006236198
- Peptide Label: isoform X4
- UniProtKB: A6IEF2 (UniProtKB/TrEMBL),   A0A8I6ALN8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017448101   ⟸   XM_017592612
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_017448100   ⟸   XM_017592611
- Peptide Label: isoform X1
- Sequence:
Name Modeler Protein Id AA Range Protein Structure
AF-Q62792-F1-model_v2 AlphaFold Q62792 1-52 view protein structure


eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen



1 to 25 of 25 rows
Database
Acc Id
Source(s)
BioCyc Gene G2FUF-45371 BioCyc
Ensembl Genes ENSRNOG00000008752 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000011851 ENTREZGENE
  ENSRNOT00000080173 ENTREZGENE
  ENSRNOT00000104816 ENTREZGENE
  ENSRNOT00000115640 ENTREZGENE
  ENSRNOT00000117472 ENTREZGENE
  ENSRNOT00000118984 ENTREZGENE
IMAGE_CLONE IMAGE:9027258 IMAGE-MGC_LOAD
MGC_CLONE MGC:187757 IMAGE-MGC_LOAD
NCBI Gene 312195 ENTREZGENE
PhenoGen Nrf1 PhenoGen
RatGTEx ENSRNOG00000008752 RatGTEx
UniProt A0A0G2KA43 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5ZLZ1_RAT UniProtKB/TrEMBL
  A0A8I5ZV29_RAT UniProtKB/TrEMBL
  A0A8I5ZWF5 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6ALN8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AN16_RAT UniProtKB/TrEMBL
  A0A8I6APQ0_RAT UniProtKB/TrEMBL
  A6IEF2 ENTREZGENE, UniProtKB/TrEMBL
  A6IEF3 ENTREZGENE, UniProtKB/TrEMBL
  B1WC04 ENTREZGENE
  F7FCI9 ENTREZGENE, UniProtKB/TrEMBL
  NRF1_RAT UniProtKB/Swiss-Prot, ENTREZGENE
1 to 25 of 25 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-04-30 Nrf1  nuclear respiratory factor 1   Nrf1_predicted  nuclear respiratory factor 1 (predicted)  'predicted' is removed 2292626 APPROVED
2007-01-31 Nrf1_predicted  nuclear respiratory factor 1 (predicted)  Nfe2l1_retired  nuclear factor (erythroid-derived 2)-like 1  Data merged from RGD:1303265 737654 APPROVED
2007-01-31 Nfe2l1_retired    Nfe2l1  nuclear factor (erythroid-derived 2)-like 1  Symbol updated 1299863 PROVISIONAL
2005-10-12 Nfe2l1        Symbol and Name status set to provisional 70820 PROVISIONAL
2005-01-12 Nrf1_predicted  nuclear respiratory factor 1 (predicted)      Symbol and Name status set to approved 70820 APPROVED