Aia2 QTL Report (Rattus norvegicus) - Rat Genome Database

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QTL Registration

QTL: Aia2 (Adjuvant induced arthritis QTL 2) Rattus norvegicus

Symbol: Aia2
Name: Adjuvant induced arthritis QTL 2
RGD ID: 61475
Trait: joint integrity trait   (VT:0010548)    
Measurement Type: joint inflammation composite score   (CMO:0000919)    
LOD Score: 5.8
P Value: Not Available
Variance: Not Available
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2439,505,275 - 73,892,441RGD_MAPPER_PIPELINE
Rnor_6.0437,685,175 - 73,066,691RGD_MAPPER_PIPELINERnor6.0
Rnor_5.0437,534,124 - 72,703,184RGDRnor5.0
RGSC_v3.4436,592,628 - 73,972,591RGDRGSC3.4
RGSC_v3.1436,711,168 - 74,248,721RGD
Cross Type: F2
Strains Crossed: DA F344/NRrrc 
JBrowse: View Region in Genome Browser (JBrowse)
Model



Disease Annotations     Click to see Annotation Detail View

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

Experimental Condition

Measurement Method

Vertebrate Trait

Rat Strain
DA  (IEA)
F344/NRrrc  (IEA)

References

Related QTLs

Related QTL Description Reference
Eau1 interacts with RGD:61035
Pia2 maps to same region RGD:61035
Iddm4 interacts with RGD:61035


Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
3082MetMET proto-oncogene, receptor tyrosine kinase44474746744854628Rat
3846Tfectranscription factor EC44406353344136815Rat
3726Smosmoothened, frizzled class receptor45701994157041779Rat
2256Cald1caldesmon 146210394862291375Rat
69274Casp2caspase 247165235871670228Rat
3444Ptnpleiotrophin46423915664330996Rat
69335Trpv6transient receptor potential cation channel, subfamily V, member 647091863170934291Rat
3455Ptprz1protein tyrosine phosphatase, receptor type Z144994104650140764Rat
620023Chrm2cholinergic receptor, muscarinic 246408902864091090Rat
3760Ssbp1single stranded DNA binding protein 146863484468645112Rat
68393Kcnd2potassium voltage-gated channel subfamily D member 244830928348816804Rat
621878Podxlpodocalyxin-like45882904958893353Rat
708437Prss3bprotease, serine, 3B46926462869268336Rat
621346Wnt2Wnt family member 244528684545332899Rat
727853Tas2r126taste receptor, type 2, member 12647183667771837603Rat
620718Arhgef5Rho guanine nucleotide exchange factor 547271077572736415Rat
2360Clcn1chloride voltage-gated channel 147167421871704318Rat
621278Arf5ADP-ribosylation factor 545571574455718670Rat
620383Calucalumenin45662561156653112Rat
620076Mkln1muskelin 145869338458817924Rat
620408N5DNA binding protein N545758872457590923Rat
3000Lepleptin45633769556351818Rat
628691Cttnbp2cortactin binding protein 244293289743096454Rat
628724LipogeninLipogenin45603344856034703Rat
620257Akr1b7aldo-keto reductase family 1, member B746185025661879733Rat
3826Tbxas1thromboxane A synthase 146662418166846745Rat
61919Slc13a1solute carrier family 13 member 145112178451199477Rat
620547Spam1sperm adhesion molecule 145219420152204369Rat
628694Zc3hav1zinc finger CCCH-type containing, antiviral 146601211166062160Rat
620698Zyxzyxin47174018871749386Rat
735018Bpgmbisphosphoglycerate mutase46191221061940697Rat
620735Tas2r118taste receptor, type 2, member 11845100221851003117Rat
3418Prss2protease, serine, 247068973770694816Rat
3155Ndufa5NADH:ubiquinone oxidoreductase subunit A545159041351598771Rat
620433Pax4paired box 445573564055753461Rat
619806Mtpnmyotrophin46301200963039422Rat
1304680Epha1Eph receptor A147174910071763681Rat
3417Prss1serine protease 147077604670779249Rat
619848Gpr37G protein-coupled receptor 3745182216351844228Rat
619858Grm8glutamate metabotropic receptor 845447434455409526Rat
1303148ST7suppression of tumorigenicity 744500022345247793Rat
1303251Mkrn1makorin ring finger protein 146718516767206478Rat
620636Trpv5transient receptor potential cation channel, subfamily V, member 547094761570974004Rat
620348Cav2caveolin 244457326444580640Rat
708585LOC286960preprotrypsinogen IV46920792769211671Rat
2332CftrCF transmembrane conductance regulator44269326342860679Rat
1303037Tmem106btransmembrane protein 106B43951767939534491Rat
2280Cav1caveolin 144459712344630206Rat
70946Pipprolactin induced protein47132085971325153Rat
1303047Fscn3fascin actin-bundling protein 345571997655729442Rat
1303054Prss58serine protease 5846914543569152111Rat
1302947Tryx5trypsin X546915626969164906Rat
708475Akr1b8aldo-keto reductase family 1, member B846177206461784637Rat
735188Gstk1glutathione S-transferase kappa 147162177771626096Rat
620752Akr1d1aldo-keto reductase family 1, member D146511070665143930Rat
620867Sval1seminal vesicle antigen-like 147137653571383953Rat
620869Sval2seminal vesicle antigen-like 247134067471344638Rat
621033Opn1swopsin 1, short wave sensitive45665384056656980Rat
1304603Nrf1nuclear respiratory factor 145733573257445317Rat
735193Fam3cFAM3 metabolism regulating signaling molecule C44938896249439892Rat
621791Exoc4exocyst complex component 446054912861358305Rat
619908BrafB-Raf proto-oncogene, serine/threonine kinase46738933167520549Rat
71011Gpr85G protein-coupled receptor 8544037770540387147Rat
620122Chl1cell adhesion molecule L1-like47026941470331313Rat
1306271RGD1306271similar to KIAA1549 protein46583493365962722Rat
1306012Klf14Kruppel-like factor 1445824787658250798Rat
2388Cpa1carboxypeptidase A145795298257959109Rat
1306040Creb3l2cAMP responsive element binding protein 3-like 246486928564981519Rat
1305563Cpa2carboxypeptidase A245785541657879239Rat
1303098Cpa5carboxypeptidase A545792533457945069Rat
1305055Atp6v0a4ATPase H+ transporting V0 subunit a446573658565821916Rat
727860Asb15ankyrin repeat and SOCS box containing 1545159881551642276Rat
735144WaslWASP like actin nucleation promoting factor45167772251726212Rat
1307778Tmem168transmembrane protein 16844000636240041129Rat
735049Dgkidiacylglycerol kinase, iota46436511564831473Rat
1306697Wdr91WD repeat domain 9146239807362438958Rat
1310447Irf5interferon regulatory factor 545680447756816271Rat
1333950Olr808olfactory receptor 80847227280972273765Rat
1311102Tspan12tetraspanin 1244885282348953240Rat
1311108Impdh1inosine monophosphate dehydrogenase 145647838356493987Rat
1308628Parp12poly (ADP-ribose) polymerase family, member 1246683564766900324Rat
1333504Olr809olfactory receptor 80947238856872389503Rat
1308938Tnpo3transportin 345682002356897310Rat
1308442Lsm8LSM8 homolog, U6 small nuclear RNA associated44555507745560943Rat
1333381Olr804olfactory receptor 80447195564071969446Rat
1308013Fam180afamily with sequence similarity 180, member A46284505462860361Rat
1359400Try10trypsin 1047065574970659252Rat
1359405Fam115efamily with sequence similarity 115, member E47201058372023952Rat
1311336Rbm28RNA binding motif protein 2845639876956438442Rat
1333098Olr816olfactory receptor 81647256679072567722Rat
1333188Olr802olfactory receptor 80247188071171881652Rat
1310722Ubn2ubinuclein 246616463966254297Rat
1333772Olr814-psolfactory receptor pseudogene 81447252316772524103Rat
1310325Chchd3coiled-coil-helix-coiled-coil-helix domain containing 346008053660358592Rat
1310346Slc37a3solute carrier family 37, member 346711891867162821Rat
1303194Hyal4hyaluronidase 445214764152166276Rat
1333327Olr815-psolfactory receptor pseudogene 81547253061772530957Rat
1308368Mgammaltase-glucoamylase46901859269114027Rat
1332594Olr806olfactory receptor 80647222155072222503Rat
1310811Aassaminoadipate-semialdehyde synthase45015200550208935Rat
1333367Olr811olfactory receptor 81147242812872429063Rat
1308651Luc7l2LUC7-like 2 pre-mRNA splicing factor46629031966357970Rat
1311446Prss3serine protease 347061452470617998Rat
1309413Nup205nucleoporin 20546270377962773931Rat
1308985Slc35b4solute carrier family 35 member B446155099561573003Rat
1332872Olr819olfactory receptor 81947263703572637976Rat
1306163Ephb6Eph receptor B647090325370918514Rat
1309217Mrps33mitochondrial ribosomal protein S3346760697167616056Rat
1309792Klhdc10kelch domain containing 1045771598257773800Rat
1308277Akr1b10aldo-keto reductase family 1 member B1046181326561830371Rat
1333975Olr810olfactory receptor 81047240351472404446Rat
1308130Ndufb2NADH:ubiquinone oxidoreductase subunit B246737818867385267Rat
1308074Plxna4plexin A445943948959883637Rat
1309682Tmem209transmembrane protein 20945779633757823283Rat
1309349Hipk2homeodomain interacting protein kinase 246643839066625183Rat
1310318Cnot4CCR4-NOT transcription complex, subunit 446256144362663225Rat
2092Akr1b1aldo-keto reductase family 1 member B46170686661720959Rat
1309236Zc3hav1lzinc finger CCCH-type containing, antiviral 1 like46598882066003450Rat
1333433Olr798-psolfactory receptor pseudogene 79846837576068376701Rat
1308226Lrgukleucine-rich repeats and guanylate kinase domain containing46141998761544748Rat
1308807Flncfilamin C45671093456738779Rat
1332716Olr813olfactory receptor 81347250293572503876Rat
1309532MdficMyoD family inhibitor domain containing44220254642282499Rat
1306142Dennd2aDENN domain containing 2A46724225767342993Rat
1310556Ing3inhibitor of growth family, member 344901723549044450Rat
1563848LOC312273Trypsin V-A46919048569196430Rat
1562034Cep41centrosomal protein 4145796678358006931Rat
1560480Fezf1Fez family zinc finger 145030928150312608Rat
1359715Slc13a4solute carrier family 13 member 446279673262841053Rat
1560283Try5trypsin 547062519670628470Rat
1562178RGD1562178similar to Adenylate kinase 244391532743916115Rat
1561995Agbl3AGBL carboxypeptidase 346229315862377740Rat
1561814Fam71f2family with sequence similarity 71, member F245655654556567350Rat
1561312Ppp1r3aprotein phosphatase 1, regulatory subunit 3A44117148641212116Rat
1561363Ttc26tetratricopeptide repeat domain 2646609017866147998Rat
1560915Tspan33tetraspanin 3345698128357005866Rat
1560653Fam131bfamily with sequence similarity 131, member B47170387271713268Rat
1563986Dennd11DENN domain containing 1146856930868597626Rat
1560026Lrrc4leucine rich repeat containing 445611065856114254Rat
1561223Vwdevon Willebrand factor D and EGF domains43963255539711430Rat
1562314Tas2r144taste receptor, type 2, member 14447158897471589933Rat
1563238Cyrencell cycle regulator of NHEJ46239177062397162Rat
1566227RGD1566227similar to RIKEN cDNA 2610101N1044313763843141049Rat
1563764Phf14PHD finger protein 1443824118938420199Rat
1564459Ccdc136coiled-coil domain containing 13645667473756704501Rat
1564219Hyal6hyaluronoglucosaminidase 645212957652142241Rat
1562066RGD1562066similar to odorant receptor ORZ647107955571080499Rat
1563929NoboxNOBOX oogenesis homeobox47274923972757066Rat
1564147Fam71f1family with sequence similarity 71, member F145659171956615157Rat
1559885Prrt4proline-rich transmembrane protein 445644259956453610Rat
1562696Pot1protection of telomeres 145188863251946764Rat
1333811Olr803olfactory receptor 80347189236871893306Rat
1332737Olr799olfactory receptor 79946880466168805605Rat
621552Atp6v1fATPase H+ transporting V1 subunit F45674456356747657Rat
631340Snd1staphylococcal nuclease and tudor domain containing 145577237756171669Rat
1311823Prss37serine protease 3746833749868349286Rat
1560649Tas2r138taste receptor, type 2, member 13846883122168832216Rat
1559697Foxp2forkhead box P244136444141944685Rat
1562852Stra8stimulated by retinoic acid 846244772462474802Rat
1334194Olr801olfactory receptor 80147186933271870273Rat
1311058Adck2aarF domain containing kinase 246735953167373390Rat
1549770Capza2capping actin protein of muscle Z-line subunit alpha 244493629044972270Rat
1560596Trim24tripartite motif-containing 2446563227865684746Rat
1559476Fmc1formation of mitochondrial complex V assembly factor 146627683566284868Rat
1562046Agkacylglycerol kinase46848334568561518Rat
1560602Tas2r137taste receptor, type 2, member 13746864829668654695Rat
1334415Olr812olfactory receptor 81247248054072481472Rat
1563055RGD1563055similar to transcription elongation factor B (SIII), polypeptide 246005412660054622Rat
1564286Moxd2monooxygenase, DBH-like 246911747769125972Rat
1561194Tas2r108taste receptor, type 2, member 10846865692868657842Rat
1334159Olr821olfactory receptor 82147267054372671505Rat
1334371Olr805-psolfactory receptor pseudogene 80547219489072195101Rat
1334209Olr818olfactory receptor 81847260324272604174Rat
1333011Olr820olfactory receptor 82047265612572657087Rat
1549759Tmem140transmembrane protein 14046238091462391913Rat
1562253Wnt16Wnt family member 1644936924649388156Rat
1560157Zfp800zinc finger protein 80045550264455527039Rat
1333677Olr807olfactory receptor 80747223994272240892Rat
1559440Cadps2calcium dependent secretion activator 245032644750861161Rat
1565448LOC498971hypothetical protein LOC49897144793729847953573Rat
1586093LOC366309similar to suppressor of initiator codon mutations, related sequence 145920318659203589Rat
1566201Thsd7athrombospondin type 1 domain containing 7A43865851239103411Rat
1587195Olr437olfactory receptor 43747258956572590494Rat
1587495Klrg2killer cell lectin like receptor G246637067466381351Rat
1565470KelKell metallo-endopeptidase (Kell blood group)47097950470996920Rat
1565474Tcaf1TRPM8 channel-associated factor 147211934972171733Rat
1584730LOC681013similar to Stathmin (Phosphoprotein p19) (pp19) (Oncoprotein 18) (Op18) (Leukemia-associated phosphoprotein p18) (pp17) (Prosolin) (Metablastin) (Protein Pr22)43794564237946090Rat
1584755Clec5aC-type lectin domain containing 5A46881033068819921Rat
1584118Tsga13testis specific, 1345819542458216712Rat
1587197Wee2WEE2 oocyte meiosis inhibiting kinase46860477068631341Rat
1584719Ndufa4NDUFA4, mitochondrial complex associated43823368038240848Rat
1585845Rbmxl1bRNA binding motif protein, X-linked-like 1B44218661242188294Rat
621579Asz1ankyrin repeat, SAM and basic leucine zipper domain containing 144535857445414177Rat
1566215Copg2COPI coat complex subunit gamma 245806439458195242Rat
1563619Cpa4carboxypeptidase A445788384957907826Rat
1561099Zc3hc1zinc finger, C3HC-type containing 145768467857706613Rat
1561636RGD1561636similar to 60S ribosomal protein L3845901415259014462Rat
1564627RGD1564627similar to ribosomal protein L3846277571862776080Rat
1566346Testestin LIM domain protein44432188344360407Rat
1566053SvoplSVOP like46566716465733222Rat
1564521Tas2r7ltaste receptor type 2 member 7-like43974744739748358Rat
1563491Cped1cadherin-like and PC-esterase domain containing 144905598849333729Rat
1566275Hyal5hyaluronoglucosaminidase 545223256552319777Rat
1561078Tas2r135taste receptor, type 2, member 13547179576871796733Rat
1565435RGD1565435similar to Hmgb1 protein46054738360548089Rat
1583532LOC681159similar to Glucosamine 6-phosphate N-acetyltransferase (Phosphoglucosamine transacetylase) (Phosphoglucosamine acetylase) (EMeg32 protein)43972735039727953Rat
1565263Rab19RAB19, member RAS oncogene family46716641267176141Rat
1564895Ahcyl2adenosylhomocysteinase-like 245705024157199870Rat
1561119Kcpkielin cysteine rich BMP regulator45675078256796878Rat
1565367RGD1565367similar to Solute carrier family 23, member 2 (Sodium-dependent vitamin C transporter 2)46248005862526724Rat
1565373Clec2lC-type lectin domain family 2, member L46640488066421656Rat
1564656LOC500035hypothetical protein LOC50003544016128540169564Rat
1564660Ankrd7ankyrin repeat domain 744556454245618932Rat
1590212Tmem229atransmembrane protein 229A45234560552350624Rat
1585938Tmem178btransmembrane protein 178B46766926668059249Rat
1593790LOC685467similar to 40S ribosomal protein S345022825350229080Rat
1591364LOC685649similar to inosine monophosphate dehydrogenase 245129654151298077Rat
1592092Lmod2leiomodin 245155343951561135Rat
1588434LOC500081hypothetical LOC50008146382510263827023Rat
1588437Strip2striatin interacting protein 245720485057248912Rat
1588440LOC500044similar to 60S ribosomal protein L7a44749661447499507Rat
1588441Bmt2base methyltransferase of 25S rRNA 2 homolog44006413140136074Rat
1587202LOC502730similar to Pyruvate kinase isozymes M1/M2 (Pyruvate kinase muscle isozyme)43935804039364054Rat
1559502Ssmem1serine-rich single-pass membrane protein 145782341157833706Rat
1587791LOC685984similar to H3 histone, family 3B45553941755539866Rat
1583604Chmp4bl1chromatin modifying protein 4B-like 146705993967060988Rat
1597981LOC681293similar to heterogeneous nuclear ribonucleoprotein A344067755240678639Rat
1597830LOC683849similar to Anionic trypsin II precursor (Pretrypsinogen II)47075578070759478Rat
1595417Rnf148ring finger protein 14845068715950693869Rat
1597444LOC689042hypothetical protein LOC68904245936519959371603Rat
1591767LOC680433hypothetical protein LOC68043347208843372094117Rat
1594589Mestmesoderm specific transcript45805278658063227Rat
1588764LOC689724similar to High mobility group protein 1 (HMG-1) (High mobility group protein B1) (Amphoterin) (Heparin-binding protein p30)46544306965443710Rat
1595436Tas2r139taste receptor, type 2, member 13947151269571513654Rat
1588991LOC685895similar to Thymidine kinase, cytosolic45341511153423760Rat
1589408Tpk1thiamin pyrophosphokinase 147279225273174179Rat
1594818LOC689234similar to catechol-O-methyltransferase domain containing 146140391361405345Rat
1588740Tmem213transmembrane protein 21346580041065823205Rat
1591053Stmp1short transmembrane mitochondrial protein 146278059662790428Rat
1594775LOC689277hypothetical protein LOC68927746165373561654284Rat
1595510Llcfc1LLLL and CFNLAS motif containing 147097747670978855Rat
1590185LOC685783similar to suppressor of variegation 3-9 homolog 245268205252682731Rat
1594187Tmem139transmembrane protein 13947164870571651861Rat
1591778Tcaf2cTRPM8 channel associated factor 2C47120800471229653Rat
1596695Rnf133ring finger protein 13345068184350686216Rat
1595049LOC685399similar to tumor protein, translationally-controlled 144973809849738888Rat
1597712LOC685171similar to protein disulfide isomerase-associated 644585440345855621Rat
1592650Kdm7alysine demethylase 7A46691560366957971Rat
1598148LOC679922similar to protease, serine, 347072912170732183Rat
1626026Vom2r-ps15vomeronasal 2 receptor, pseudogene 1546817031168171122Rat
2314878Mir592microRNA 59245518237055182465Rat
2319288Ube2hubiquitin-conjugating enzyme E2H45751141857625147Rat
2319900Hilpdahypoxia inducible lipid droplet-associated45654760056550584Rat
2319954Gcc1GRIP and coiled-coil domain containing 145570804055719884Rat
2320107LOC100361458hypothetical LOC10036145845356293953563719Rat
2319013LOC100365467hypothetical LOC10036546746294867362950357Rat
2322826LOC100363521hypothetical LOC10036352144041906940420713Rat
2321500LOC100360758peroxiredoxin-1-like47164497471646078Rat
2323279LOC100359864hypothetical LOC10035986447115780971158694Rat
2323280LOC100359863hypothetical LOC10035986344982915049839240Rat
2323329LOC100359812hypothetical LOC10035981247101188971012279Rat
2321181LOC100364378hypothetical LOC10036437844815971148160152Rat
4145674IqubIQ motif and ubiquitin domain containing45148216951586881Rat
2323538LOC100359702cytochrome c oxidase, subunit VIc-like44893372548934347Rat
2324469LOC100362586ribosomal protein L23-like46626137366261867Rat
2323857LOC100359436rCG25051-like44028446340285383Rat
2325393Mir29amicroRNA 29a45834393158344018Rat
2325414Mir490microRNA 49046334294363343026Rat
2325456Mir129-1microRNA 129-145630172656301797Rat
2325560Mir183microRNA 18345746356957463678Rat
2325582Mir96microRNA 9645746336657463471Rat
2325591Mir29b1microRNA 29b-145834431058344390Rat
4888604Mir3556amicroRNA 3556a45834391958344036Rat
4888613Mir3553microRNA 355345746357257463677Rat
4888616Mir182microRNA 18245745977357459834Rat
4888577Mir3587microRNA 358745834428358344345Rat
6487302Tcaf2TRPM8 channel-associated factor 247117797471196286Rat
6489527LOC100912035tubulin beta chain-like44696383846967234Rat
6492017LOC10091159460S ribosomal protein L4-like47016374970166277Rat
6493361LOC100911317uncharacterized LOC10091131746944412669444900Rat
6495158LOC100911007T-cell receptor beta chain T17T-22-like46938408369388704Rat
6487032LOC100912449protein FAM115C-like47124137071263038Rat
6493676LOC100911252peptidyl-prolyl cis-trans isomerase A-like44000461740005358Rat
6493911LOC100911271uncharacterized LOC10091127146943552169437265Rat
6494850LOC100911179L-lactate dehydrogenase A chain-like43939107239392091Rat
6494965LOC100911086T-cell receptor beta chain T17T-22-like46938322369392373Rat
6496223LOC100910843polymerase delta-interacting protein 2-like46924907069251340Rat
6503507LOC100909424uncharacterized LOC10090942446633590466337704Rat
6497379LOC100910662myosin light polypeptide 6-like46183651561837745Rat
7517929LOC102548553uncharacterized LOC10254855347270621972709048Rat
7531073LOC102556178uncharacterized LOC10255617844829983148309832Rat
7512277LOC102550644uncharacterized LOC10255064444441986344572511Rat
7512304LOC102555859uncharacterized LOC10255585945118663051199658Rat
7503592LOC102548611uncharacterized LOC10254861145895583758971135Rat
7632355LOC102548336developmental pluripotency-associated protein 4-like45883971658842244Rat
7650176LOC102549986uncharacterized LOC10254998646916949769178241Rat
7666339LOC102555403ferritin heavy chain-like46744251567443283Rat
7621248LOC102553352mortality factor 4-like protein 1-like46233050762335883Rat
7594577LOC102551824killer cell lectin-like receptor 4-like47001076270026493Rat
7626918LOC102554668uncharacterized LOC10255466846737687367378101Rat
7641224LOC102548177uncharacterized LOC10254817743888634238887298Rat
7643066LOC102554568serine/arginine-rich splicing factor 3-like46735346267353906Rat
7609534LOC102548489uncharacterized LOC10254848943987125939877904Rat
7643646LOC102549088uncharacterized LOC10254908845933960459370768Rat
7568823LOC102556089thyroid hormone receptor-associated protein 3-like45117283751174281Rat
7590867LOC102552990phosphoglycerate kinase 1-like45724971657251699Rat
7618053LOC102554637anionic trypsin-2-like47074396570747241Rat
7618420LOC102554766uncharacterized LOC10255476646752162467522568Rat
7596691LOC102547989uncharacterized LOC10254798943777682637854477Rat
7574135LOC102555151uncharacterized LOC10255515146794749767963203Rat
7545679LOC102548706LYR motif-containing protein 4-like44005240240055867Rat
7563828LOC102552812uncharacterized LOC10255281245695226056954976Rat
7604324LOC102555999uncharacterized LOC10255599944203387942038155Rat
7552981LOC102551982prolactin-inducible protein homolog47139000071489915Rat
7707294LOC10255627460S ribosomal protein L9-like44009156540092192Rat
7689603LOC102553416uncharacterized LOC10255341645791279857925235Rat
7739309LOC102553126uncharacterized LOC10255312646266333662678025Rat
7715275LOC102548552uncharacterized LOC10254855243999874339999582Rat
7733889LOC102548423uncharacterized LOC10254842345894016558947769Rat
7733981LOC102554507uncharacterized LOC10255450746330017163308079Rat
7696844LOC102551271uncharacterized LOC10255127144490817444936075Rat
7699413LOC102547990collagen alpha-1(XII) chain-like45866096058662152Rat
7671121LOC102550745uncharacterized LOC10255074544466835844674283Rat
7675565LOC102551067mucin-1-like45552603855527763Rat
7682276LOC10255374760S ribosomal protein L21-like45881262058813536Rat
9131000LOC103692064uncharacterized LOC10369206444512883045146303Rat
9138984LOC103692100uncharacterized LOC10369210046584663265848343Rat
9175419LOC103692088uncharacterized LOC10369208845880750958809140Rat
9140300LOC103690198taste receptor type 2 member 14347179036371793845Rat
9099302LOC103692095uncharacterized LOC10369209546018791060188370Rat
9102085Prr21proline rich 2146122038661222956Rat
9071813LOC103692080uncharacterized LOC10369208044851095448516723Rat
9152467LOC103692116uncharacterized LOC10369211647083359170839751Rat
9192921LOC103692061uncharacterized LOC10369206144315470943168961Rat
9159197LOC103692092transcription factor BTF3 pseudogene45922121559222331Rat
9112364LOC103692063uncharacterized LOC10369206344463842144668178Rat
9194012LOC103692118uncharacterized LOC10369211847099928571049422Rat
9196134LOC103692090uncharacterized LOC10369209045845425558454948Rat
9116769LOC103692103uncharacterized LOC10369210346764925367662394Rat
9074090LOC103692079uncharacterized LOC10369207944846447748471419Rat
9074622LOC103692099uncharacterized LOC10369209946249389562500919Rat
9348766LOC10369208460S ribosomal protein L27 pseudogene45028986050290314Rat
9267310LOC103692110interferon-induced transmembrane protein 2 pseudogene45824301758243465Rat
9267734LOC103692117uncharacterized LOC10369211747097516670977497Rat
9268500LOC103692060fatty acid-binding protein, heart pseudogene44046324140464430Rat
9307225LOC103692101uncharacterized LOC10369210146654723066551668Rat
9309524LOC103692106putative uncharacterized protein DDB_G029169045681305456813319Rat
9320161LOC103692107small nuclear ribonucleoprotein E pseudogene46633250666334771Rat
9321245LOC103692059uncharacterized LOC10369205943835088938353548Rat
9383372LOC103692105uncharacterized LOC10369210546944418369452280Rat
9383752LOC10369208160S ribosomal protein L3 pseudogene44852653548533380Rat
9383753LOC103692119uncharacterized LOC10369211947205207672053640Rat
9374544LOC103692082protein SDA1 homolog44854011848545154Rat
9324693LOC10369208660S ribosomal protein L35a pseudogene45658171656582018Rat
9325313LOC103692089uncharacterized LOC10369208945846828358469365Rat
9290605LOC103692091uncharacterized LOC10369209145887131058875519Rat
9295085LOC103692083uncharacterized LOC10369208344939594449401717Rat
9369725LOC103690059maltase-glucoamylase, intestinal-like46884901468996940Rat
9369941LOC103692093plexin-A4-like45978652959883422Rat
9298384Smkr1small lysine-rich protein 145726500857281271Rat
9300873LOC103692112uncharacterized protein-like46002351960031713Rat
9304216LOC103692094uncharacterized LOC10369209445992530759933874Rat
9463902LOC103692113uncharacterized LOC10369211346715271967164367Rat
9330178LOC10369207460 kDa heat shock protein, mitochondrial pseudogene43892530838938931Rat
9389926LOC103692085uncharacterized LOC10369208545656266356563102Rat
9472094Atp6v1fnbATP6V1F neighbor45674832656750536Rat
9472607LOC103689990protein FAM115C-like47127473971287256Rat
9474169LOC103692108tubulin beta chain-like44872388448727280Rat
9408229LOC103692111uncharacterized LOC10369211145846943258504056Rat
9410961LOC103695207peptidyl-prolyl cis-trans isomerase D-like45876743658770243Rat
9413023LOC103692102uncharacterized LOC10369210246712925067129792Rat
9417071LOC103692097uncharacterized LOC10369209746196595361970623Rat
11369403LOC108350835uncharacterized LOC10835083545869348858696567Rat
11372626LOC108350699uncharacterized LOC10835069947093237370940358Rat
11449079LOC108350678uncharacterized LOC10835067845201765452043322Rat
11448653LOC108350693high mobility group protein B1 pseudogene46609091766092259Rat
11462874LOC108350837uncharacterized LOC10835083746091323060916633Rat
11464143LOC108350677thymosin beta-10 pseudogene45176094451761128Rat
11467604LOC108350833uncharacterized LOC10835083345835447458373379Rat
11468151LOC108350681uncharacterized LOC10835068145631312856327888Rat
11469036LOC10835068360S ribosomal protein L19 pseudogene45708965257091911Rat
11471040LOC108350689uncharacterized LOC10835068946037774760427520Rat
11363596LOC108350856uncharacterized LOC10835085643914134039147577Rat
11367433LOC108350674reticulon-4-like45031315350320379Rat
11447015LOC108348337uncharacterized LOC10834833747299746672998956Rat
11370861LOC108350694insulin-induced gene 1 protein pseudogene46633500966339637Rat
11439332LOC108350688uncharacterized LOC10835068845944822259536742Rat
11450777LOC108350691uncharacterized LOC10835069146229037562293099Rat
11429063LOC10835080060S ribosomal protein L23a pseudogene44510272045118196Rat
11451624Trnar-ccu2transfer RNA arginine (anticodon CCU) 246627617966276251Rat
11453204LOC108350673uncharacterized LOC10835067344724485647331220Rat
11383946LOC108350697uncharacterized LOC10835069746857843268581763Rat
11394978LOC108350690uncharacterized LOC10835069046170561161707087Rat
11406136LOC108350834uncharacterized LOC10835083445866976158674115Rat
11418069LOC108350672uncharacterized LOC10835067244299954943000857Rat
11419404LOC108350809glyceraldehyde-3-phosphate dehydrogenase pseudogene47263838872639423Rat
11422917LOC10835069660S ribosomal protein L26-like46740536567406401Rat
11385621LOC108350682small nuclear ribonucleoprotein G pseudogene45697989856980145Rat
11375280LOC108350680uncharacterized LOC10835068045624694856249774Rat
11375714LOC108350836uncharacterized LOC10835083646134873561354819Rat
11391623LOC108350679uncharacterized LOC10835067945239616152409336Rat
11403251Trnap-agg6transfer RNA proline (anticodon AGG) 645666638956666460Rat
11519975LOC108350676uncharacterized LOC10835067645160492451667044Rat
11503662LOC108350685uncharacterized LOC10835068545777921657781541Rat
11480393LOC108350692uncharacterized LOC10835069246308852663106433Rat
11480651LOC108350684uncharacterized LOC10835068445745405357456074Rat
11481974LOC108350700uncharacterized LOC10835070047289768672912046Rat
11498065LOC10835080840S ribosomal protein S23 pseudogene47220713272207648Rat
11494192LOC108350675uncharacterized LOC10835067545085070450858354Rat
11484912LOC10835080760S ribosomal protein L30-like46976375869766686Rat
11485345LOC108350687uncharacterized LOC10835068745941767059422130Rat
11491226LOC108350695small nuclear ribonucleoprotein Sm D1 pseudogene46636578266366228Rat

Markers in Region
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolExpected SizeChrStartStopSpeciesMatch
10144D4Mgh1624146170810361708341Ratregion
10145D4Arb1039646170805161708444Ratregion
11171D4Hri215547077350970773663Ratregion
11172D4Wox2419447077349970773683Ratregion
11173D4Arb829647077347170773766Ratregion
11174D4Mgh3238147069022770690630Ratregion
11176D4Wox2320047069389070694058Ratregion
11177D4Arb937047069106270691431Ratregion
34238D4Mgh225043770327237703537Ratregion
34282D4Mgh1513945537586555376001Ratregion
34379D4Mgh310045692211556922212Ratregion
34716D4Mgh1413343768517537685319Ratregion
11342D4Got4318446864502068645203Ratregion
11401D4Arb1218447082250570822688Ratregion
33656D4Mit99945532485755324953Ratregion
33682D7Mit1820046693905766939242Ratregion
33757D4Mit224945579156455791834Ratregion
36037D4Rat1313944018791840188056Ratregion
36181D4Rat2616047077347570773654Ratregion
37438D4Rat11921746294768762947927Ratregion
35260D4Rat2217046103890161039065Ratregion
36852D4Rat1816946518650465186664Ratregion
37012D4Rat2512746598781465987930Ratregion
36530D4Rat1713944674595046746048Ratregion
36540D4Rat2415045864001758640228Ratregion
36753D4Rat2014045977789059778029Ratregion
34845D4Rat1913347224394272244072Ratregion
34967D4Rat1516244865625248656399Ratregion
34967D4Rat1516244689827646898423Ratregion
35082D4Rat7313645733263057332753Ratregion
35092D4Rat2112946131147461311615Ratregion
35625D4Rat1417944341460543414792Ratregion
39688D4Rat21110643841781938417919Ratregion
39748D4Rat15715045298144252981585Ratregion
39918D4Rat15521944805395048054155Ratregion
38104D4Rat11824746467941264679659Ratregion
38116D4Rat13213045884662158846740Ratregion
38310D4Rat13516846468277264682933Ratregion
40620D4Rat22617146161243361612587Ratregion
40734D4Rat16114946641117266411310Ratregion
38434D4Rat13413945131186651311982Ratregion
38728D4Rat12226146491565164915903Ratregion
39980D4Rat15622144768569447685910Ratregion
40008D4Rat22422344991200849912220Ratregion
38966D4Rat9320046766330067663504Ratregion
39104D4Rat9610246557715265577249Ratregion
39110D4Rat10123344763832247638508Ratregion
39266D4Rat10224646639400066394255Ratregion
39548D4Rat15420344637632746376529Ratregion
42142D4Arb1133045939024759390480Ratregion
42158D4Arb2613043768517537685317Ratregion
42164D4Arb2921046353717963537431Ratregion
42170D4Arb3416546862914368629316Ratregion
42174D4Arb3612047069388970694058Ratregion
42176D4Arb376046172133561721437Ratregion
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41202D4Rat15219743898409538984279Ratregion
42694D4Rat22520045847180958471986Ratregion
42695D4Rat29120445936296359363153Ratregion
42696D4Rat25723346164376361643987Ratregion
42697D4Rat25620046227970662279923Ratregion
40910D4Rat15823245652405356524287Ratregion
41124D4Rat16220546909072669090937Ratregion
41616D4Rat19315746963171469631874Ratregion
41846D4Rat25423345175840251758636Ratregion
41888D4Rat28224543907303139073276Ratregion
41902D4Rat25321044549298045493189Ratregion
43788D4Got2724744068471440684960Ratregion
43789D4Got3218944933520049335388Ratregion
43790D4Got3413344499621744996349Ratregion
43791D4Got2927544847756948477843Ratregion
43793D4Got3112645215428452154409Ratregion
43794D4Got14622744324717043247396Ratregion
43795D4Wox1010045730707557307181Ratregion
43796D4Got4218045867352958673708Ratregion
43797D4Got3519845715864857158845Ratregion
43798D4Got4017745968582359685998Ratregion
43800D4Got3716245918021559180376Ratregion
43801D4Got3820845909974859099955Ratregion
43802D4Got4116246043912760439288Ratregion
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43810D4Got5120647174455871744763Ratregion
60429D4Got14714645364066853640813Ratregion
60436D4Got2629843841763538417932Ratregion
60438D4Got3026344968793949688203Ratregion
60439D4Got3316245481120454811365Ratregion
60440D4Got4517246674734766747518Ratregion
60443D4Got5021246451830564518516Ratregion
60446D4Got5824647190255771902802Ratregion
60406D4Got10114146985295269853092Ratregion
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62480D4Uia217846837941268379589Ratregion
66667D4Mco131644490475844905083Ratregion
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1635138D4Got23212147012453670124656Ratregion
1635755D4Wox3710645706409857064203Ratregion
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7206214Insig118646633608766336251Ratregion
5031516AU04807115243956113639561287Ratregion
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5026300RH13168420046486598864866187Ratregion
5028913RH14279723444462854544628778Ratregion
5029027RH14323921546220200662202220Ratregion
5026456RH13228420345234589952346101Ratregion
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5032329Copg2as142945806428058064708Ratregion
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5027083STS-H2311716045611221356112372Ratregion
5029733BF3934099746193429061934386Ratregion
5035350BQ20563415046602923966029388Ratregion
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5027111GDB:131795414645050308650503231Ratregion
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5507525REN11424324445540829955408542Ratregion
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5507597Opn1sw88545665443856655322Ratregion
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5505588UniSTS:48508494146837576068376700Ratregion
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5505560GDB:45854138046648928166489360Ratregion
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5506082UniSTS:498320116044881396748815126Ratregion
5506278G2054715344904239249042544Ratregion
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5506630ECD0020294644190837841909323Ratregion
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5500428REN6225124544300917743009421Ratregion
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5500851GDB:45851419645611224456112339Ratregion
5500426REN6225223244300896543009196Ratregion
5500452AI72259962545031020050310824Ratregion
5501319ECD1552447444255195742552430Ratregion
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5501335ECD2014223444493632944936562Ratregion
5505039Met7044477602844776097Ratregion
5501449Tcrb-C12547082924370830009Ratregion
5501691CHRM259546408940564089999Ratregion
5501754MARC_11525-11526:1001518036:115845664286656643641Ratregion
5501818MARC_13931-13932:1007579490:149044194054541941034Ratregion
5501874MARC_16655-16656:1017778016:121547165500971655476Ratregion
5505518UniSTS:1040810545943955759439661Ratregion
5505770UniSTS:492976147046408904764090516Ratregion
5505841UniSTS:49589182447091141970912242Ratregion
5505855UniSTS:4959549145184364751843737Ratregion
5502381RH12466932546737204267372366Ratregion
5502519RH12517711647174092571741040Ratregion
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5507411REN10221924444168418041684423Ratregion
5507421REN10258525144175519541755445Ratregion
5507423REN10287525144181882741819077Ratregion
5507425REN10311824244186855241868793Ratregion
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5507429REN10323824744189851541898761Ratregion
5507431REN10324024944189896841899216Ratregion
5507433REN10326625544190483341905087Ratregion
5507435REN10326524144190459641904836Ratregion
5502251AU04127717545704250157042675Ratregion
Position Markers

Flank 1: (D4Arb26)
Rat AssemblyChrPosition (strand)Source
mRatBN7.2439,505,275 - 39,505,418 (+)MAPPER
Rnor_6.0437,685,175 - 37,685,317NCBI
Rnor_5.0437,534,124 - 37,534,266UniSTS
RGSC_v3.4436,592,628 - 36,592,771RGD
RGSC_v3.4436,592,629 - 36,592,771UniSTS
RGSC_v3.1436,711,168 - 36,711,311RGD
Celera434,949,819 - 34,949,961UniSTS
RH 2.0 Map4299.7RGD
SHRSP x BN Map421.52RGD
Cytogenetic Map4 RGD
Peak: (D4Mgh15)
Rat AssemblyChrPosition (strand)Source
mRatBN7.2456,698,790 - 56,698,927 (+)MAPPER
Rnor_6.0455,375,865 - 55,376,001NCBI
Rnor_5.0455,118,586 - 55,118,722UniSTS
RGSC_v3.4454,879,077 - 54,879,214RGD
RGSC_v3.4454,879,078 - 54,879,214UniSTS
RGSC_v3.1455,129,235 - 55,129,371RGD
Celera451,815,819 - 51,815,955UniSTS
RH 3.4 Map4301.72UniSTS
RH 3.4 Map4301.72RGD
Cytogenetic Map4q22UniSTS
Flank 2: (D4Arb30)
Rat AssemblyChrPosition (strand)Source
RGSC_v3.4473,972,454 - 73,972,591UniSTS
RGSC_v3.4473,972,453 - 73,972,591RGD
RGSC_v3.1474,248,583 - 74,248,721RGD
Celera469,789,851 - 69,789,980UniSTS
RH 3.4 Map4465.4RGD
RH 3.4 Map4465.4UniSTS
RH 2.0 Map4512.0RGD
SHRSP x BN Map437.38RGD
FHH x ACI Map445.77RGD
Cytogenetic Map4q24UniSTS


QTLs in Region (Rnor_6.0)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
634323Hc2Hypercalciuria QTL 22.15urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)4142118977Rat
619616Bp79Blood pressure QTL 790.0292arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)4304323179575658Rat
2303168Bp330Blood pressure QTL 3304.250.017arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)43043231145254791Rat
2302371Stl22Serum triglyceride level QTL 225.15blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)4304401755791834Rat
1358203Stl19Serum triglyceride level QTL 192.80.002blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)4304401764915903Rat
631642Stl2Serum triglyceride level QTL 23.3blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)4304780755324857Rat
631209Bw2Body weight QTL24.2retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)4646769343414792Rat
1300141Bp178Blood pressure QTL 178arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)4657293937703537Rat
631261Tcas3Tongue tumor susceptibility QTL 36.88tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)4734240492484039Rat
2316958Gluco58Glucose level QTL 5810blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)47850904182171018Rat
9590304Scort17Serum corticosterone level QTL 174.960.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)4805218953052189Rat
6478724Anxrr35Anxiety related response QTL 350.00449defecation behavior trait (VT:0010462)defecation measurement (CMO:0000997)4805218953052189Rat
6478766Anxrr47Anxiety related response QTL 470.09637locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)4805218953052189Rat
6478769Anxrr48Anxiety related response QTL 480.02514locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4805218953052189Rat
8552906Pigfal3Plasma insulin-like growth factor 1 level QTL 3blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)4805218953052189Rat
8694374Bw155Body weight QTL 1553.390.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)4805218953052189Rat
2303585Bw86Body weight QTL 864body mass (VT:0001259)body weight (CMO:0000012)41263897457638974Rat
7387227Uae40Urinary albumin excretion QTL 402.90.0052urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)41614994161149941Rat
70222Eae2Experimental allergic encephalomyelitis QTL 24.3nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)41822218737685319Rat
1354665Stl10Serum triglyceride level QTL 103.57blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)41822218743414792Rat
61412Pia2Pristane induced arthritis QTL 23.9joint integrity trait (VT:0010548)post-insult time to onset of experimental arthritis (CMO:0001450)41822218761039065Rat
10755501Bp390Blood pressure QTL 3902.5arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)423850384169318094Rat
6909122Insul22Insulin level QTL 224.63blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)42399172176238799Rat
6909128Pancm4Pancreatic morphology QTL 411.35pancreas mass (VT:0010144)pancreas wet weight (CMO:0000626)42399172176238799Rat
1578655Bmd11Bone mineral density QTL 1111femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)42463187469631874Rat
8655906Rf60Renal function QTL 603.8blood creatinine amount (VT:0005328)creatinine clearance (CMO:0000765)42665474981874227Rat
12798520Anxrr55Anxiety related response QTL 554.450.01locomotor behavior trait (VT:0001392)number of rearing movements with lid-pushing in an experimental apparatus (CMO:0002715)429549895112807890Rat
11530004Niddm71Non-insulin dependent diabetes mellitus QTL 710.001blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)43155448451311866Rat
8655949Rf62Renal function QTL 6222blood urea nitrogen amount (VT:0005265)plasma urea nitrogen level (CMO:0000586)43182520043414792Rat
8552782Vie1Viral induced encephalitis QTL 126.4brain integrity trait (VT:0010579)encephalitis incidence/prevalence measurement (CMO:0002361)43182556083531021Rat
8552801Bw143Body weight QTL 1437.3body mass (VT:0001259)change in body weight to body weight ratio (CMO:0002216)43182556083531021Rat
8552809Vie5Viral induced encephalitis QTL 525.3brain integrity trait (VT:0010579)encephalitis incidence/prevalence measurement (CMO:0002361)43182556083531021Rat
61415Eae11Experimental allergic encephalomyelitis QTL 112.9nervous system integrity trait (VT:0010566)post-insult time to onset of experimental autoimmune encephalomyelitis (CMO:0001422)43363780337685319Rat
2313401Anxrr27Anxiety related response QTL 27aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)43363780361708341Rat
8655961Kidm43Kidney mass QTL 4318kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)43427793299067150Rat
4889511Gluco61Glucose level QTL 614.70.001blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)43513886039073276Rat
2290374Gluco32Glucose level QTL 326.27blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)43513886043414792Rat
1300156Bp179Blood pressure QTL 1792.85arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)43661559937703537Rat
1358352Srcrt3Stress Responsive Cort QTL 32.29blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)436615599145611886Rat
61475Aia2Adjuvant induced arthritis QTL 25.8joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)43768517573066691Rat
1331807Rf31Renal function QTL 312.988urine potassium amount (VT:0010539)urine potassium level (CMO:0000128)43770327275345433Rat
1300139Hrtrt6Heart rate QTL 62.85heart pumping trait (VT:2000009)heart rate (CMO:0000002)437703272115372927Rat
61445Strs3Sensitivity to stroke QTL 33cerebrum integrity trait (VT:0010549)post-insult time to onset of cerebrovascular lesion (CMO:0002343)43920822284208222Rat
8694439Bw168Body weight QTL 1689.570.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)43920824784208247Rat
6893678Bw108Body weight QTL 1082.60.006body mass (VT:0001259)body weight (CMO:0000012)44241577787415777Rat
1576305Emca6Estrogen-induced mammary cancer QTL 65.8mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)443414605155469929Rat
1354660Salc1Saline consumption QTL 111.26drinking behavior trait (VT:0001422)saline drink intake rate (CMO:0001627)443414792146942075Rat
1354612Foco1Food consumption QTL 18.87eating behavior trait (VT:0001431)food intake rate (CMO:0000427)443414792146942075Rat
1298082Stresp4Stress response QTL 4blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)446898276145611886Rat
10450821Scl77Serum cholesterol level QTL 774.10.01blood VLDL cholesterol amount (VT:0005144)blood high density lipoprotein cholesterol level (CMO:0000052)44768569455791834Rat
10450825Scl78Serum cholesterol level QTL 783.70.01blood VLDL cholesterol amount (VT:0005144)blood low density lipoprotein cholesterol level (CMO:0000053)44768569455791834Rat
10450818Scl76Serum cholesterol level QTL 763.60.01blood VLDL cholesterol amount (VT:0005144)blood high density lipoprotein cholesterol level (CMO:0000052)44768569455791834Rat
2312567Glom19Glomerulus QTL 191.90.006kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)449906054145611886Rat
4889969Bss96Bone structure and strength QTL 964.9tibia size trait (VT:0100001)tibia cortical bone volume (CMO:0001725)45532485779575658Rat
4889972Bss97Bone structure and strength QTL 975.6tibia size trait (VT:0100001)tibia total bone volume (CMO:0001724)45532485779575658Rat
5685009Bmd86Bone mineral density QTL 863.7tibia mineral mass (VT:1000283)bone mineral density (CMO:0001226)45532485779575658Rat
5685012Bmd87Bone mineral density QTL 875.1tibia mineral mass (VT:1000283)bone mineral content (CMO:0001554)45532485779575658Rat
70200Alc18Alcohol consumption QTL 189.2drinking behavior trait (VT:0001422)ethanol intake volume to total fluid intake volume ratio (CMO:0001591)455324953148360954Rat
1641833Alc21Alcohol consumption QTL 218.60.0001drinking behavior trait (VT:0001422)ethanol drink intake rate (CMO:0001407)455375865125671711Rat
634311Sach7Saccharin preference QTL 7taste sensitivity trait (VT:0001986)saccharin intake volume to total fluid intake volume ratio (CMO:0001601)45579156482134846Rat
631546Bp86Blood pressure QTL 863.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)45579156492484312Rat
61336Bp21Blood pressure QTL 214.6arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)45579183479557856Rat
1578657Bss12Bone structure and strength QTL 128.9femur morphology trait (VT:0000559)femoral neck cross-sectional area (CMO:0001697)456092756101092756Rat
1578658Bss13Bone structure and strength QTL 138femur strength trait (VT:0010010)femoral neck polar moment of inertia (CMO:0001670)456092756101092756Rat
1558651Swd3Spike wave discharge measurement QTL 34.620.000024brain electrophysiology trait (VT:0010557)brain spike-and-wave discharge frequency (CMO:0001742)45710107792990863Rat
631671Iddm11Insulin dependent diabetes mellitus QTL 113.60.0012blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)45730707579578854Rat
1358363Sradr3Stress Responsive Adrenal Weight QTL 36.19adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)458166424103166424Rat
738009Sach4Saccharine consumption QTL 44.90.000016consumption behavior trait (VT:0002069)saccharin intake volume to total fluid intake volume ratio (CMO:0001601)458640017154427984Rat
738016Alc16Alcohol consumption QTL 163.60.00015consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)458640017154427984Rat
738031Alc14Alcohol consumption QTL 147.60.00003consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)458640017154427984Rat
1549843Bw53Body weight QTL 530.0001body mass (VT:0001259)body weight gain (CMO:0000420)46043912799066957Rat
1549839Bw52Body weight QTL 520.0001body mass (VT:0001259)body weight gain (CMO:0000420)460439127113416139Rat
61418Pia5Pristane induced arthritis QTL 54.5joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)461038901127777403Rat
7394826Bw126Body weight QTL 1260.002body mass (VT:0001259)body weight gain (CMO:0000420)46170810388565113Rat
8552807Vie4Viral induced encephalitis QTL 47.3brain integrity trait (VT:0010579)encephalitis incidence/prevalence measurement (CMO:0002361)46170834183531021Rat
70192BpQTLcluster5Blood pressure QTL cluster 54.183arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)461708341113100992Rat
70192BpQTLcluster5Blood pressure QTL cluster 54.183arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)461708341113100992Rat
70192BpQTLcluster5Blood pressure QTL cluster 54.183arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)461708341113100992Rat
70192BpQTLcluster5Blood pressure QTL cluster 54.183arterial blood pressure trait (VT:2000000)percent change in mean arterial blood pressure (CMO:0002035)461708341113100992Rat
70192BpQTLcluster5Blood pressure QTL cluster 54.183arterial blood pressure trait (VT:2000000)percent change in systolic blood pressure (CMO:0000747)461708341113100992Rat
70192BpQTLcluster5Blood pressure QTL cluster 54.183arterial blood pressure trait (VT:2000000)absolute change in pulse pressure (CMO:0001882)461708341113100992Rat
70192BpQTLcluster5Blood pressure QTL cluster 54.183arterial blood pressure trait (VT:2000000)absolute change in mean arterial blood pressure (CMO:0000533)461708341113100992Rat
2300179Bmd50Bone mineral density QTL 505.90.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)461975371106975371Rat
1641919Alc22Alcohol consumption QTL 220.0005drinking behavior trait (VT:0001422)ethanol drink intake rate (CMO:0001407)462947687125671711Rat
631674Iddm14Insulin dependent diabetes mellitus QTL 14blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)463537179157286626Rat
6478684Anxrr30Anxiety related response QTL 300.00087defecation behavior trait (VT:0010462)defecation rate (CMO:0000998)463812687108812687Rat
6478743Anxrr40Anxiety related response QTL 400.83076defecation behavior trait (VT:0010462)defecation rate (CMO:0000998)463812687108812687Rat
6478772Anxrr49Anxiety related response QTL 490.15488defecation behavior trait (VT:0010462)defecation rate (CMO:0000998)463812687108812687Rat
631651Bp124Blood pressure QTL 1243arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)463938412108938412Rat
2317577Eae24Experimental allergic encephalomyelitis QTL 24nervous system integrity trait (VT:0010566)post-insult time to onset of experimental autoimmune encephalomyelitis (CMO:0001422)46598781473372824Rat
2317577Eae24Experimental allergic encephalomyelitis QTL 24nervous system integrity trait (VT:0010566)percentage of study population developing experimental autoimmune encephalomyelitis during a period of time (CMO:0001047)46598781473372824Rat
2317577Eae24Experimental allergic encephalomyelitis QTL 24nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis severity score (CMO:0001419)46598781473372824Rat
2312569Pur19Proteinuria QTL 193.40.001total urine protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)46598924397759057Rat
2306547Iddm38Insulin dependent diabetes mellitus QTL 38blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)46639400070773654Rat
61330Eau1Experimental allergic uveoretinitis QTL 10.0003uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)470773471132455556Rat
634344Hcar7Hepatocarcinoma resistance QTL 77.8liver integrity trait (VT:0010547)liver tumorous lesion area to total liver area ratio (CMO:0001075)471476518116476518Rat
634344Hcar7Hepatocarcinoma resistance QTL 77.8liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)471476518116476518Rat


Additional Information

Database Acc Id Source(s)
NCBI Gene Aia2

RGD Curation Notes
Note Type Note Reference
qtl_gene whole genome analysis using PGMapper revealed Irf5 and Ptn as RA associated genes and Irf5 as RA associated polymorphism either in coding or regulatory region 2300074
qtl_gene 248 known and 53 novel genes were found in an analysis based on PubMed and OMIM data 2307198
qtl_general transfer of this QTL to congenic and subcongenic strains had no effect on arthritis severity 629560