Aia2 QTL Report (Rattus norvegicus) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Behavioral & Substance Use Disorder Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
QTL Registration

QTL: Aia2 (Adjuvant induced arthritis QTL 2) Rattus norvegicus

Symbol: Aia2
Name: Adjuvant induced arthritis QTL 2
RGD ID: 61475
Trait: joint integrity trait   (VT:0010548)    
Measurement Type: joint inflammation composite score   (CMO:0000919)    
LOD Score: 5.8
P Value: Not Available
Variance: Not Available
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr8440,471,453 - 75,939,996RGD_MAPPER_PIPELINE
mRatBN7.2439,505,275 - 73,892,441RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.0437,685,175 - 73,066,691RGD_MAPPER_PIPELINERnor_6.0
Rnor_5.0437,534,124 - 72,703,184RGDRnor_5.0
RGSC_v3.4436,592,628 - 73,972,591RGDRGSC_v3.4
RGSC_v3.1436,711,168 - 74,248,721RGD
Cross Type: F2
Strains Crossed: DA F344/NRrrc 



Disease Annotations     Click to see Annotation Detail View

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

Experimental Condition

Measurement Method

Vertebrate Trait

Rat Strain
DA  (IEA)
F344/NRrrc  (IEA)

References

References - curated
# Reference Title Reference Citation
1. Mapping and functional characterization of rat chromosome 4 regions that regulate arthritis models and phenotypes in congenic strains. Backdahl L, etal., Arthritis Rheum 2003 Feb;48(2):551-9.
2. Quest for arthritis-causative genetic factors in the rat. Joe B Physiol Genomics. 2006 Oct 3;27(1):1-11. Epub 2006 Jun 27.
3. Localization of quantitative trait loci regulating adjuvant-induced arthritis in rats: evidence for genetic factors common to multiple autoimmune diseases. Kawahito Y, etal., J Immunol 1998 Oct 15;161(8):4411-9
4. The complexity in hunting for candidate genes within QTL that determine susceptibility to arthritis in rats. Xiong Q, etal., Crit Rev Immunol. 2008;28(2):127-57.
5. Genetic and molecular basis of quantitative trait loci of arthritis in rat: genes and polymorphisms. Xiong Q, etal., J Immunol. 2008 Jul 15;181(2):859-64.
Related QTLs

Related QTL Description Reference
Eau1 interacts with RGD:61035
Pia2 maps to same region RGD:61035
Iddm4 interacts with RGD:61035


Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
7596691LOC102547989uncharacterized LOC10254798944056447940644596Rat
40982246LOC120102694small nucleolar RNA SNORA1744070011740700236Rat
1584730Stmnl-ps2stathmin like, pseudogene 244073586140736309Rat
1584719Ndufa4Ndufa4, mitochondrial complex associated44096839140975559Rat
1563764Phf14PHD finger protein 1444097589741162043Rat
41002968LOC120102235uncharacterized LOC12010223544108554841107179Rat
41140158LOC120102687small nucleolar RNA SNORA1744127521341275329Rat
1566201Thsd7athrombospondin type 1 domain containing 7A44142727641865524Rat
7641224Rps2-ps40ribosomal protein S2, pseudogene 4044164833941649233Rat
9330178LOC10369207460 kDa heat shock protein, mitochondrial pseudogene44168751241698846Rat
11363596LOC108350856uncharacterized LOC10835085644190318941909463Rat
1587202Pkm-ps19pyruvate kinase M1/2, pseudogene 1944212229042128137Rat
402064713LOC134486729L-lactate dehydrogenase A chain-like44216572942166717Rat
1303037Tmem106btransmembrane protein 106B44229407442313426Rat
1561223Vwdevon Willebrand factor D and EGF domains44241967642468992Rat
1583532Gnpnat1-ps1glucosamine-phosphate N-acetyltransferase 1, pseudogene 144251502042515571Rat
1564521Tas2r7ltaste receptor type 2 member 7-like44253564342536554Rat
7609534LOC102548489uncharacterized LOC10254848944266050642667204Rat
6493676LOC100911252peptidyl-prolyl cis-trans isomerase A-like44279496142795713Rat
1307778Tmem168transmembrane protein 16844279671442824854Rat
41264909LOC120102634small nucleolar RNA SNORA4444283552742835653Rat
7545679Lyrm4-ps1LYR motif containing 4, pseudogene 144283613142841671Rat
1588441SamtorS-adenosylmethionine sensor upstream of mTORC144284772042911546Rat
41065803LOC120102155uncharacterized LOC12010215544295494242964083Rat
71011Gpr85G protein-coupled receptor 8544307019443075662Rat
2322826Smim30l1small integral membrane protein 30 like 144310776943109413Rat
402179065LOC134486730fatty acid-binding protein, heart-like44315084143166455Rat
2323857Plscr2-ps1phospholipid scramblase 2, pseudogene 144320222743325025Rat
41230048LOC120102706small nucleolar RNA SNORA1744336490243365032Rat
1597981Hnrnpa1-ps53heterogeneous nuclear ribonucleoprotein A1, pseudogene 5344342694143428028Rat
41017590Rnu6-210RNA, U6 small nuclear 21044368768743687789Rat
402287868LOC134486731uncharacterized LOC13448673144375846643773460Rat
1561312Ppp1r3aprotein phosphatase 1, regulatory subunit 3A44390564843946236Rat
402191493LOC134486878small ribosomal subunit protein eS27-like44404216144050359Rat
1559697Foxp2forkhead box P244409984844677700Rat
402450151LOC134486732uncharacterized LOC13448673244476803344796849Rat
1585845Rbmxl1bRbmx like 1B44492226344923954Rat
1309532MdficMyoD family inhibitor domain containing44493830145018157Rat
41011912LOC120102753U2 spliceosomal RNA44515213345152316Rat
1562178Ak2-ps3adenylate kinase 2, pseudogene 344593260145934227Rat
3846Tfectranscription factor EC44607209346146200Rat
402461090LOC134486669uncharacterized LOC13448666944625285346255198Rat
41270777LOC120102238uncharacterized LOC12010223844632997646331225Rat
1566346Testestin LIM domain protein44633125746369782Rat
7512277LOC102550644uncharacterized LOC10255064444651160946582010Rat
620348Cav2caveolin 244658268146590058Rat
2280Cav1caveolin 144660653846639616Rat
9112364LOC103692063uncharacterized LOC10369206344664864146677665Rat
7671121LOC102550745uncharacterized LOC10255074544667774046702228Rat
3082MetMET proto-oncogene, receptor tyrosine kinase44675682346864041Rat
1549770Capza2capping actin protein of muscle Z-line subunit alpha 244694404046979930Rat
1303148St7suppression of tumorigenicity 744700756847255639Rat
41017039LOC12010244460S ribosomal protein L23a-like44710896847117502Rat
402163728LOC134486733uncharacterized LOC13448673344712164047153455Rat
621346Wnt2Wnt family member 244729430047340284Rat
621579Asz1ankyrin repeat, SAM and basic leucine zipper domain containing 144736637347421976Rat
2332CftrCF transmembrane conductance regulator44742208447694646Rat
41373703LOC120102563U6 spliceosomal RNA44771860847718714Rat
628691Cttnbp2cortactin binding protein 244776686747930598Rat
402205054LOC134486734uncharacterized LOC13448673444783388947834667Rat
41325296LOC120102241uncharacterized LOC12010224144787200947915673Rat
1566227U2surp-ps1U2 snRNP-associated SURP domain containing, pseudogene 144797179447974890Rat
402297293LOC134486735uncharacterized LOC13448673544799568748003288Rat
402317688LOC134486736uncharacterized LOC13448673644808552048090111Rat
1308442Lsm8LSM8 homolog, U6 small nuclear RNA associated44827212848277994Rat
1564660Ankrd7ankyrin repeat domain 744827814448302622Rat
1597712Pdia6l1protein disulfide isomerase family A, member 6 like 144857244348573661Rat
11453204LOC108350673uncharacterized LOC10835067344971230049798705Rat
1588440Rpl7al1ribosomal protein L7A like 144995980749962610Rat
41283447LOC120102623small nucleolar RNA SNORA7245053098750531110Rat
2321181Nid2-ps1nidogen 2, pseudogene 145059842250599058Rat
7531073Kcnd2l1potassium voltage-gated channel subfamily D member 2 like 145074092950742313Rat
68393Kcnd2potassium voltage-gated channel subfamily D member 245074159551243540Rat
9383752LOC10369208160S ribosomal protein L3 pseudogene45095809450969576Rat
9374544Sdad1-ps1SDA1 domain containing 1, pseudogene 145097102951005210Rat
402227515LOC134486738uncharacterized LOC13448673845109914551114329Rat
402453188LOC134486690tubulin beta chain-like45115114151212276Rat
402429104LOC134486737uncharacterized LOC13448673745123752951238512Rat
1311102Tspan12tetraspanin 1245127956251355030Rat
402202762LOC134486739cytochrome c oxidase subunit 6C-2-like45135990551361205Rat
1310556Ing3inhibitor of growth family, member 345143921851469502Rat
1563491Cped1cadherin-like and PC-esterase domain containing 145148249751755440Rat
1562253Wnt16Wnt family member 1645178672851797137Rat
735193Fam3cFAM3 metabolism regulating signaling molecule C45180568651853030Rat
40966555Rps2-ps30ribosomal protein S2, pseudogene 3045201571752147191Rat
402233783LOC134486741translationally-controlled tumor protein-like45216142852165499Rat
2323280Ddx50-ps1DExD-box helicase 50, pseudogene 145218880852261938Rat
3455Ptprz1protein tyrosine phosphatase, receptor type Z145236300652560905Rat
1310811Aassaminoadipate-semialdehyde synthase45257214652628811Rat
1593790Rps3-ps7ribosomal protein S3, pseudogene 745264789252648700Rat
9348766LOC10369208460S ribosomal protein L27 pseudogene45270788752708366Rat
402173595LOC134486670uncharacterized LOC13448667045272552152726773Rat
1560480Fezf1Fez family zinc finger 145272838552733315Rat
402311769LOC134486742uncharacterized LOC13448674245273217552737334Rat
1559440Cadps2calcium dependent secretion activator 245274605453275252Rat
1596695Rnf133ring finger protein 13345310609753109032Rat
1595417Rnf148ring finger protein 14845311141653118125Rat
402001627LOC134486740uncharacterized LOC13448674045311725053126825Rat
11494192LOC108350675uncharacterized LOC10835067545327038753272333Rat
620735Tas2r118taste receptor, type 2, member 11845341481553415714Rat
61919Slc13a1solute carrier family 13 member 145353476353612704Rat
41390060Thrap3-ps3thyroid hormone receptor associated protein 3, pseudogene 345358457953589381Rat
1591364Impdh2-ps1inosine monophosphate dehydrogenase 2, pseudogene 145370439053705926Rat
4145674IqubIQ motif and ubiquitin domain containing45389733653962279Rat
3155Ndufa5NADH:ubiquinone oxidoreductase subunit A545396287753971235Rat
11519975LOC108350676uncharacterized LOC10835067645397587454035836Rat
727860Asb15ankyrin repeat and SOCS box containing 1545398721754014128Rat
1592092Lmod2leiomodin 245403297454040670Rat
735144WaslWASP like actin nucleation promoting factor45404908154097653Rat
41046683LOC120102245thymosin beta-10-like45413255654133055Rat
1564219Hyal6hyaluronoglucosaminidase 645420363554216332Rat
1303194Hyal4hyaluronidase 445422172854240364Rat
620547Spam1sperm adhesion molecule 145426828754278455Rat
1566275Hyal5hyaluronoglucosaminidase 545430664354378272Rat
41007128LOC120102673small nucleolar RNA SNORA1745435152554351653Rat
1590212Tmem229atransmembrane protein 229A45440582254410802Rat
40982331LOC120102560U4 spliceosomal RNA45441282654412909Rat
402206166LOC134486743uncharacterized LOC13448674345441811154425675Rat
41116076LOC120102770small nucleolar RNA U345443811254438221Rat
41340465LOC120102695small nucleolar RNA SNORA1745466209654662219Rat
1590185Suv39h2-ps1SUV39H2 histone lysine methyltransferase, pseudogene 145474436254745041Rat
619848Gpr37G protein-coupled receptor 3745510435555126420Rat
1562696Pot1protection of telomeres 145517082155228588Rat
41278566LOC120102621U7 small nuclear RNA45521536155215421Rat
41203940LOC120102612U7 small nuclear RNA45521543555215496Rat
40965413LOC120102246uncharacterized LOC12010224645522857955233554Rat
41126584Rnu6-321RNA, U6 small nuclear 32145526914255269248Rat
11449079LOC108350678uncharacterized LOC10835067845528423955323474Rat
41236019LOC120102247uncharacterized LOC12010224745539756355410037Rat
1588991Tk1-ps1thymidine kinase 1, pseudogene 145573274055741336Rat
41096447LOC120102705small nucleolar RNA SNORA1745584833755848469Rat
2320107Snx11-ps1sorting nexin 11, pseudogene 145588071655881496Rat
41167571LOC120102158uncharacterized LOC12010215845644229856457881Rat
41153446LOC120102756U2 spliceosomal RNA45676203656762196Rat
619858Grm8glutamate metabotropic receptor 845677124757696951Rat
41002790LOC120102608small nucleolar RNA SNORA73 family45722362757223830Rat
40972881LOC120102759U2 spliceosomal RNA45741742257417565Rat
2314878Mir592microRNA 59245747074857470843Rat
1560157Zfp800zinc finger protein 80045776378957977318Rat
41034677LOC120102248uncharacterized LOC12010224845776974957786707Rat
1587791H3f3cl2H3 histone, family 3C like 245781525857827985Rat
40930852LOC120102657U1 spliceosomal RNA45792174857921911Rat
2319954Gcc1GRIP and coiled-coil domain containing 145799626158008126Rat
621278Arf5ARF GTPase 545800391958006898Rat
1303047Fscn3fascin actin-bundling protein 345800812458017674Rat
620433Pax4paired box 445802387358032265Rat
402121557LOC134486564uncharacterized LOC13448656445804653158060462Rat
631340Snd1staphylococcal nuclease and tudor domain containing 145806068958459926Rat
628724LipogeninLipogenin45832173158322986Rat
1560026Lrrc4leucine rich repeat containing 445839894258402538Rat
41397929LOC120102250uncharacterized LOC12010225045855090658600815Rat
402192324LOC134486565metalloproteinase inhibitor 1-like45855679658582370Rat
2325456Mir129-1microRNA 129-145858971158589782Rat
3000Lepleptin45862652958640663Rat
1311336Rbm28RNA binding motif protein 2845868833758727312Rat
1559885Prrt4proline-rich transmembrane protein 445873144758742408Rat
1311108Impdh1inosine monophosphate dehydrogenase 145876723058782825Rat
41279683LOC120102707small nucleolar RNA SNORA1745880085058801001Rat
402371206LOC134486744uncharacterized LOC13448674445883139258845276Rat
2319900Hilpdahypoxia inducible lipid droplet-associated45883646358839423Rat
1561814Garin1agolgi associated RAB2 interactor 1A45884539458856199Rat
9389926LOC103692085uncharacterized LOC10369208545885149758854666Rat
1564147Garin1bgolgi associated RAB2 interactor 1B45888053758903966Rat
620383Calucalumenin45891445658941957Rat
621033Opn1swopsin 1, short wave sensitive45894268558945825Rat
11403251Trnap-agg6transfer RNA proline (anticodon AGG) 645895499458955065Rat
1564459Ccdc136coiled-coil domain containing 13645896319658992962Rat
402247273LOC134486566uncharacterized LOC13448656645899495059002193Rat
1308807Flncfilamin C45899944559027240Rat
621552Atp6v1fATPase H+ transporting V1 subunit F45903302059035980Rat
9472094Spmip1sperm microtubule inner protein 145903692659038848Rat
402304174LOC134486567involucrin-like45903971459041373Rat
1561119Kcpkielin cysteine rich BMP regulator45904820959083522Rat
1310447Irf5interferon regulatory factor 545909291459104596Rat
1308938Tnpo3transportin 345910827859197012Rat
402297692LOC134486568uncharacterized LOC13448656845919652459203807Rat
7563828LOC102552812uncharacterized LOC10255281245923449759241614Rat
402225153LOC134486745uncharacterized LOC13448674545924173759243552Rat
41373976Snrpg-ps6small nuclear ribonucleoprotein polypeptide G, pseudogene 645926911659270697Rat
1560915Tspan33tetraspanin 3345927071359294249Rat
41285462LOC120102481uncharacterized LOC12010248145927239559277495Rat
3726Smosmoothened, frizzled class receptor45931108459341280Rat
41009975LOC120102483uncharacterized LOC12010248345934348859348601Rat
1564895Ahcyl2adenosylhomocysteinase-like 245934874759498503Rat
402159907LOC134486569large ribosomal subunit protein eL19-like45938970459399874Rat
1588437Strip2striatin interacting protein 245950347859545745Rat
7590867Pgk1-ps1phosphoglycerate kinase 1, pseudogene 145954686759548156Rat
9298384Smkr1-ps1small lysine-rich protein 1, pseudogene 145956281859576401Rat
41058543LOC120102484uncharacterized LOC12010248445958661359605785Rat
1304603Nrf1nuclear respiratory factor 145963236659738166Rat
4888616Mir182microRNA 18245975224659752307Rat
2325582Mir96microRNA 9645975584159755946Rat
2325560Mir183microRNA 18345975604459756153Rat
4888613Mir3553microRNA 355345975604759756152Rat
2319288Ube2hubiquitin-conjugating enzyme E2H45980210259897583Rat
41334655LOC120102640small nucleolar RNA SNORA3245991881459918910Rat
1561099Zc3hc1zinc finger, C3HC-type containing 145995740259979336Rat
1309792Klhdc10kelch domain containing 1045998871060046518Rat
402236062LOC134486570uncharacterized LOC13448657046004623160051898Rat
11503662LOC108350685uncharacterized LOC10835068546005184460054264Rat
1309682Tmem209transmembrane protein 20946007034660096039Rat
1559502Ssmem1serine-rich single-pass membrane protein 146009613360106429Rat
1305563Cpa2carboxypeptidase A246012529760151066Rat
41176579LOC120102251uncharacterized LOC12010225146013318960164864Rat
1563619Cpa4carboxypeptidase A446015567560179644Rat
7689603LOC102553416uncharacterized LOC10255341646017666560197080Rat
1303098Cpa5carboxypeptidase A546019712360216883Rat
2388Cpa1carboxypeptidase A146022480160230928Rat
1562034Cep41centrosomal protein 4146023860260279670Rat
1594589Mestmesoderm specific transcript46032181460332288Rat
1566215Copg2COPI coat complex subunit gamma 246033345560468953Rat
1584118Tsga13testis specific, 1346046913660490218Rat
402171091LOC134486571uncharacterized LOC13448657146047472960483671Rat
9267310LOC103692110interferon-induced transmembrane protein 2 pseudogene46051633460517616Rat
1306012Klf14KLF transcription factor 1446052136360524285Rat
402087241LOC134486746uncharacterized LOC13448674646055127360558942Rat
4888604Mir3556amicroRNA 3556a46061794360618060Rat
2325393Mir29amicroRNA 29a46061795560618042Rat
4888577Mir3587microRNA 358746061830760618369Rat
2325591Mir29b1microRNA 29b-146061833460618414Rat
40935195Trnad-auctransfer RNA aspartic acid (anticodon AUC)46075483160754904Rat
41397436LOC120102487uncharacterized LOC12010248746079089660813336Rat
41196392LOC120102488uncharacterized LOC12010248846084030760848968Rat
41038068LOC120102486uncharacterized LOC12010248646093720660969720Rat
620076Mkln1muskelin 146093923961095214Rat
9410961Ppid-ps6peptidylprolyl isomerase D, pseudogene 646104381961045471Rat
621878Podxlpodocalyxin-like46110243461149131Rat
7632355Dppa4-ps8developmental pluripotency-associated 4, pseudogene 846111296561117535Rat
402013736LOC134486572uncharacterized LOC13448657246112953261148897Rat
402435469LOC134486747uncharacterized LOC13448674746120343561221865Rat
1561636Rpl38l1ribosomal protein L38 like 146126354661263971Rat
402277781LOC134486748uncharacterized LOC13448674846138260561385649Rat
1586093Eif1-ps3eukaryotic translation initiation factor 1, pseudogene 346145235661452812Rat
402370203LOC134486749transcription factor BTF3-like46147133861480929Rat
7643646LOC102549088uncharacterized LOC10254908846158693161618715Rat
15974441700012A03RiklRIKEN cDNA 1700012A03 gene like46161204461619579Rat
11485345LOC108350687uncharacterized LOC10835068746166544961676749Rat
1308074Plxna4plexin A446168748362129467Rat
11439332LOC108350688uncharacterized LOC10835068846170047861784572Rat
401985961LOC134486671uncharacterized LOC13448667146217440562184970Rat
1563055Elob-ps10elongin B, pseudogene 1046230141262301751Rat
1310325Chchd3coiled-coil-helix-coiled-coil-helix domain containing 346232757462584085Rat
1565435Hmgb1-ps5high-mobility group box 1, pseudogene 546277273162773791Rat
621791Exoc4exocyst complex component 446277489663551541Rat
41082831LOC120102446FAD-linked sulfhydryl oxidase ALR-like46306716263067974Rat
1594818LOC689234similar to catechol-O-methyltransferase domain containing 146358360563599343Rat
1308226Lrgukleucine-rich repeats and guanylate kinase domain containing46361443163737463Rat
1308985Slc35b4solute carrier family 35 member B446374418863766200Rat
1594775Ndufab1-ps2NADH:ubiquinone oxidoreductase subunit AB1, pseudogene 246384596963846549Rat
402395750LOC134486750uncharacterized LOC13448675046387959363903482Rat
2092Akr1b1aldo-keto reductase family 1 member B146389922263913315Rat
708475Akr1b15aldo-keto reductase family 1 member B1546396442163976995Rat
402013993LOC134486751uncharacterized LOC13448675146398344564001146Rat
1308277Akr1b10aldo-keto reductase family 1 member B1046400563264027860Rat
6497379Myl6-ps4myosin light chain 6, pseudogene 446402888264041917Rat
620257Akr1b7aldo-keto reductase family 1, member B746404390164083751Rat
735018Bpgmbisphosphoglycerate mutase46410680964135749Rat
2256Cald1caldesmon 146423290664414085Rat
41095347LOC120102254uncharacterized LOC12010225446432810164331037Rat
1561995Agbl3AGBL carboxypeptidase 346441613964498987Rat
1549759Tmem140transmembrane protein 14046450362164514620Rat
1563238Cyrencell cycle regulator of NHEJ46451447764519896Rat
1306697Wdr91WD repeat domain 9146452150464558873Rat
1562852Stra8stimulated by retinoic acid 846456858064591914Rat
1565367Slc23a4solute carrier family 23 member 446459842964646168Rat
9074622LOC103692099uncharacterized LOC10369209946460210464622503Rat
1310318Cnot4CCR4-NOT transcription complex, subunit 446467990364781432Rat
7739309LOC102553126uncharacterized LOC10255312646478130464796393Rat
1309413Nup205nucleoporin 20546482205164887996Rat
402309422LOC134486752large ribosomal subunit protein eL38-like46488968564890146Rat
1591053Stmp1short transmembrane mitochondrial protein 146489466364904495Rat
1359715Slc13a4solute carrier family 13 member 446491050564955986Rat
402072118LOC134486753uncharacterized LOC13448675346493082064936118Rat
1308013Fam180afamily with sequence similarity 180, member A46495999964975176Rat
402203128LOC134486754uncharacterized LOC13448675446501251765015930Rat
2319013Supt4h1-ps2SPT4 homolog, DSIF elongation factor subunit, pseudogene 246506209465063141Rat
619806Mtpnmyotrophin46512639065153803Rat
41021819LOC120102764U2 spliceosomal RNA46552976565529904Rat
41309461LOC120102671small nucleolar RNA SNORA1746554782165547949Rat
1588434Rhebl1-ps1RHEB like 1, pseudogene 146578535165786088Rat
7733981LOC102554507uncharacterized LOC10255450746597376465982269Rat
41195642LOC120102763U2 spliceosomal RNA46597420765974305Rat
620023Chrm2cholinergic receptor, muscarinic 246598113666116128Rat
2325414Mir490microRNA 49046601458666014669Rat
3444Ptnpleiotrophin46626076466342614Rat
735049Dgkidiacylglycerol kinase, iota46637789766839790Rat
1306040Creb3l2cAMP responsive element binding protein 3-like 246687462366990962Rat
620752Akr1d1aldo-keto reductase family 1, member D146712128867154543Rat
402283321LOC134486755uncharacterized LOC13448675546741372867418178Rat
41237666Hmgb1-ps18high-mobility group box 1, pseudogene 1846745884168059076Rat
1560596Trim24tripartite motif-containing 2446753424067659014Rat
1566053SvoplSVOP like46766365267725691Rat
1305055Atp6v0a4ATPase H+ transporting V0 subunit a446772714567809092Rat
1588740Tmem213transmembrane protein 21346779201067798039Rat
1306271Kiaa1549KIAA1549 homolog46780763567935303Rat
402375822LOC134486756uncharacterized LOC13448675646781701467823617Rat
1309236Zc3hav1lZC3HAV1 like46795725067972540Rat
628694Zc3hav1zinc finger CCCH-type containing, antiviral 146797905568029353Rat
1561363Ift56intraflagellar transport 5646805753068115494Rat
11448653LOC108350693high mobility group protein B1 pseudogene46805828868061271Rat
1310722Ubn2ubinuclein 246813049768218471Rat
402389889LOC134486757large ribosomal subunit protein uL14-like46822552768226046Rat
402365774LOC134486759uncharacterized LOC13448675946823815268240098Rat
11451624Trnar-ccu2transfer RNA arginine (anticodon CCU) 246824035368240425Rat
1559476Fmc1formation of mitochondrial complex V assembly factor 146824100968249045Rat
1308651Luc7l2LUC7 pre-mRNA splicing factor like 246825143568314861Rat
9320161LOC103692107small nuclear ribonucleoprotein E pseudogene46829385268296346Rat
41372108LOC120102490insulin-induced gene 1 protein-like46829547868300681Rat
1587495Klrg2killer cell lectin like receptor G246831434768341759Rat
402105177LOC134486758small nuclear ribonucleoprotein Sm D1-like46832603268326359Rat
1565373Clec2lC-type lectin domain family 2, member L46835902168381431Rat
1309349Hipk2homeodomain interacting protein kinase 246839935868586404Rat
3826Tbxas1thromboxane A synthase 146863184168803959Rat
41142180LOC120102680small nucleolar RNA SNORA1746873417568734305Rat
1308628Parp12poly (ADP-ribose) polymerase family, member 1246879341168851214Rat
401996367LOC134486573uncharacterized LOC13448657346885100468876700Rat
1592650Kdm7alysine demethylase 7A46886626368992979Rat
41161250Rnu6-604RNA, U6 small nuclear 60446899899768999103Rat
1583604Chmp4bl1chromatin modifying protein 4B-like 146901656569017614Rat
1310346Slc37a3solute carrier family 37, member 346907612469120392Rat
1565263Rab19RAB19, member RAS oncogene family46912396269133691Rat
1303251Mkrn1makorin ring finger protein 146914271069170211Rat
40962184LOC120102609small nucleolar RNA SNORA7146916597869166101Rat
1306142Dennd2aDENN domain containing 2A46919981469299128Rat
7643066Srsf3-ps6serine and arginine rich splicing factor 3, pseudogene 646930913169311387Rat
1311058Adck2aarF domain containing kinase 246931563369328535Rat
619908BrafB-Raf proto-oncogene, serine/threonine kinase46932977269476931Rat
7626918Tmsb10-ps5thymosin, beta 10, pseudogene 546932985469330251Rat
1308130Ndufb2NADH:ubiquinone oxidoreductase subunit B246933430769341394Rat
41225554Rpl26-ps11ribosomal protein L26, pseudogene 1146935768169362162Rat
7666339Fth1-ps1ferritin heavy chain 1, pseudogene 146939857069403679Rat
402161474LOC134486574uncharacterized LOC13448657446947774969478886Rat
402351339LOC134486760uncharacterized LOC13448676046953254269540580Rat
1309217Mrps33mitochondrial ribosomal protein S3346956350169572317Rat
40994299LOC120102257uncharacterized LOC12010225746958150969589437Rat
9116769LOC103692103uncharacterized LOC10369210346960627269619130Rat
1585938Tmem178btransmembrane protein 178B46962618870002400Rat
7574135LOC102555151uncharacterized LOC10255515146989111369906246Rat
1562046Agkacylglycerol kinase47008155070160642Rat
1563986Dennd11DENN domain containing 1147016386970232731Rat
1587197Wee2WEE2 oocyte meiosis inhibiting kinase47020445970228813Rat
3760Ssbp1single stranded DNA binding protein 147023274070242824Rat
1560602Tas2r137taste receptor, type 2, member 13747024296470256215Rat
1561194Tas2r108taste receptor, type 2, member 10847025436770255281Rat
1311823Prss37serine protease 3747028967870301259Rat
1333433Or9a7-ps1olfactory receptor family 9 subfamily A member 7, pseudogene 147032742070328361Rat
1332737Or9a4olfactory receptor family 9 subfamily A member 447036830070369244Rat
1584755Clec5aC-type lectin domain containing 5A47037385570383560Rat
1560649Tas2r138taste receptor, type 2, member 13847039504270396037Rat
9369725Mgammaltase-glucoamylase47040826370568752Rat
1308368Mgam2maltase-glucoamylase 247059070670682462Rat
1564286Moxd2monooxygenase, DBH-like 247069137370699868Rat
1303054Prss58serine protease 5847071932670731158Rat
1302947Prss59protease, serine 5947073089070751798Rat
1563848Prss3bl1protease, serine, 3B like 147076434170770286Rat
7085851810009J06RiklRIKEN cDNA 1810009J06 gene like47078178370792997Rat
6496223Poldip2-ps1DNA polymerase delta interacting protein 2, pseudogene 147082297470824913Rat
708437Prss3bprotease, serine, 3B47083848470842192Rat
6493911Trbvl1T cell receptor beta variable like 147100359871004750Rat
1311446Prss3serine protease 347116974971173223Rat
41142645Cdc42-ps1cell division cycle 42, pseudogene 147117381871174534Rat
1560283Try5trypsin 547118042171183695Rat
1359400Try10trypsin 1047121097671214479Rat
3418Prss2protease, serine, 247124496471250043Rat
1598148Prss2-ps1protease, serine, 2, pseudogene 147128434871287410Rat
7618053LOC102554637anionic trypsin-2-like47129828271302429Rat
1597830Prss2l1protease, serine, 2 like 147131099871314666Rat
3417Prss1serine protease 147133124971334452Rat
402383173LOC102554731T-cell receptor beta-2 chain C region-like47138036371385891Rat
41021783LOC120102259uncharacterized LOC12010225947138813971392164Rat
41226242LOC120102568U6 spliceosomal RNA47141596871416074Rat
1306163Ephb6Eph receptor B647145863271473889Rat
69335Trpv6transient receptor potential cation channel, subfamily V, member 647147400671489667Rat
620636Trpv5transient receptor potential cation channel, subfamily V, member 547150308571531134Rat
1595510Llcfc1LLLL and CFNLAS motif containing 147153285471534229Rat
1565470KelKell metallo-endopeptidase (Kell blood group)47153488271552297Rat
2323329Ndufa2-ps2NADH:ubiquinone oxidoreductase subunit A2, pseudogene 247156731071567720Rat
1562066Or9a2olfactory receptor family 9 subfamily A member 247163808871639032Rat
2323279Dtl-ps1denticleless E3 ubiquitin protein ligase, pseudogene 147171915171720253Rat
70946Pipprolactin induced protein47175426571758559Rat
620869Sval2seminal vesicle antigen-like 247177600471779968Rat
620867Sval1seminal vesicle antigen-like 147181186371822827Rat
1595436Tas2r139taste receptor, type 2, member 13947195191271952871Rat
1562314Tas2r144taste receptor, type 2, member 14447205281572053774Rat
735188Gstk1glutathione S-transferase kappa 147208553272089934Rat
2321500Prdx1-ps1peroxiredoxin 1, pseudogene 147210750672112564Rat
1594187Tmem139transmembrane protein 13947211343772115786Rat
69274Casp2caspase 247211626572134023Rat
41054799LOC120102741small nucleolar RNA SNORD8847212715072127238Rat
2360Clcn1chloride voltage-gated channel 147213873972168113Rat
1560653Fam131bfamily with sequence similarity 131, member B47216766772176924Rat
41384154LOC120102260uncharacterized LOC12010226047217575572183478Rat
620698Zyxzyxin47220399172213181Rat
1304680Epha1Eph receptor A147221302272227543Rat
41267017LOC120102261uncharacterized LOC12010226147222749172251586Rat
1566290Tas2r143taste receptor, type 2, member 14347225448472255368Rat
1561078Tas2r135taste receptor, type 2, member 13547225953972260504Rat
727853Tas2r126taste receptor, type 2, member 12647230044872301374Rat
1334194Or2r11olfactory receptor family 2 subfamily R member 1147233311472334055Rat
1333188Or2r3olfactory receptor family 2 subfamily R member 347234449372345434Rat
1333811Or2r3bolfactory receptor family 2 subfamily R member 3B47235615072357088Rat
1333381Or10ac1olfactory receptor family 10 subfamily AC member 147241698572417938Rat
1359405Fam115efamily with sequence similarity 115, member E47247690472491208Rat
1591778Tcaf2cTRPM8 channel associated factor 2C47252032772543150Rat
402155632LOC134486765TRPM8 channel-associated factor 2-like47255444472567279Rat
1565474Tcaf1TRPM8 channel-associated factor 147258971072639304Rat
1334371Or2f5-ps1olfactory receptor family 2 subfamily F member 5, pseudogene 147266248572662926Rat
11498065LOC10835080840S ribosomal protein S23 pseudogene47267474272675258Rat
1332594Or2f1olfactory receptor family 2 subfamily F member 147268895972689912Rat
1333677Or2f1bolfactory receptor family 2 subfamily F member 1B47270734972708299Rat
1333950Or2f2olfactory receptor family 2 subfamily F member 247274021672741172Rat
41357395LOC120102713small nucleolar RNA SNORA1747275494972755082Rat
1333504Or13m2olfactory receptor family 13 subfamily M member 247275976972760704Rat
1333975Or2q1olfactory receptor family 2 subfamily Q member 147277539072776322Rat
41399876LOC120102605U6 spliceosomal RNA47279495072795051Rat
1333367Or6b1olfactory receptor family 6 subfamily B member 147280000472800939Rat
1334415Or2a5olfactory receptor family 2 subfamily A member 547285609472857026Rat
1332716Or2a25olfactory receptor family 2 subfamily A member 2547287858872879529Rat
1333772Or2a12-ps1olfactory receptor family 2 subfamily A member 12, pseudogene 147289872972899665Rat
1333327Olr815-psolfactory receptor pseudogene 81547290617972906519Rat
1333098Or2a14olfactory receptor family 2 subfamily A member 1447294235372943285Rat
1587195Or2a52olfactory receptor family 2 subfamily A member 5247296512872966057Rat
1334209Or2a7olfactory receptor family 2 subfamily A member 747297903672979968Rat
40956713LOC120102160uncharacterized LOC12010216047298597672989150Rat
1332872Or2a51olfactory receptor family 2 subfamily A member 5147301282973013770Rat
11419404LOC108350809glyceraldehyde-3-phosphate dehydrogenase pseudogene47301418273015181Rat
1333011Or2a20olfactory receptor family 2 subfamily A member 2047303191973032881Rat
1334159Or2a57olfactory receptor family 2 subfamily A member 5747304633973047301Rat
7517929LOC102548553uncharacterized LOC10254855347307375273088275Rat
620718Arhgef5Rho guanine nucleotide exchange factor 547308724073112311Rat
1563929NoboxNOBOX oogenesis homeobox47312892673134431Rat
1589408Tpk1thiamin pyrophosphokinase 147317012573557683Rat
11481974LOC108350700uncharacterized LOC10835070047324913773293050Rat
41181679LOC120102665small nucleolar RNA SNORA1747378132673781455Rat
402360505LOC134486575uncharacterized LOC13448657547467801174683751Rat
1587194St13-ps9ST13, Hsp70 interacting protein, pseudogene 947493642474937663Rat
41128409LOC120102161uncharacterized LOC12010216147506317375074446Rat
1307076Cntnap2contactin associated protein 247510935877366258Rat
41075400Trnav-aac34transfer RNA valine (anticodon AAC) 3447572869875728770Rat

Markers in Region
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolExpected SizeChrStartStopSpeciesMatch
10144D4Mgh1623946390045863900697Ratregion
10145D4Arb1039446390040663900800Ratregion
11172D4Wox2418547132870171328886Ratregion
11174D4Mgh3240447124545371245857Ratregion
11176D4Wox2316947124911671249285Ratregion
34230D4Mgh2413047572605875726188Ratregion
34238D4Mgh226644049044240490708Ratregion
34282D4Mgh1513745766425257664389Ratregion
34379D4Mgh39845921043959210537Ratregion
34716D4Mgh1414544047145340471598Ratregion
33656D4Mit99745761324257613339Ratregion
33711D4Mit512147416981374169934Ratregion
33757D4Mit227145807987558080146Ratregion
37438D4Rat11923346506096065061193Ratregion
35260D4Rat2216546324502663245191Ratregion
36852D4Rat1816146719676767196928Ratregion
37012D4Rat2511746796011267960229Ratregion
37026D4Rat2711747350049073500607Ratregion
36530D4Rat179944936149249361591Ratregion
36540D4Rat2421246091626460916476Ratregion
34845D4Rat1913147271134872711479Ratregion
34967D4Rat1514845108565551085803Ratregion
35082D4Rat7312345962873759628860Ratregion
35092D4Rat2112046350726663507386Ratregion
35625D4Rat1418844542970945429897Ratregion
35811D4Rat2314946104105761041206Ratregion
39748D4Rat15714445503450855034652Ratregion
39790D4Rat21316747582561775825784Ratregion
39918D4Rat15520645049046650490672Ratregion
38104D4Rat11824846668438166684629Ratregion
38116D4Rat13212046111999761120117Ratregion
38310D4Rat13516246668774566687907Ratregion
40620D4Rat22615546380492263805077Ratregion
40698D4Rat16324747470369674703943Ratregion
38434D4Rat13411745371971453719831Ratregion
38728D4Rat12225346692489866925151Ratregion
39980D4Rat15621745014392650144143Ratregion
40008D4Rat22421345233333552333548Ratregion
40360D4Rat21217044124605741246227Ratregion
39104D4Rat969846757634967576447Ratregion
39110D4Rat10118745009771650097903Ratregion
39266D4Rat10225646835356768353823Ratregion
42142D4Arb1123446163822461638458Ratregion
42158D4Arb2614344047145340471596Ratregion
42164D4Arb2925346549585165496104Ratregion
42168D4Arb3013847593985875939996Ratregion
42170D4Arb3417447022701170227185Ratregion
42174D4Arb3617047124911571249285Ratregion
42176D4Arb3710346391369063913793Ratregion
42178D4Arb3817847132870871328886Ratregion
41202D4Rat15218544174623741746422Ratregion
41336D4Rat16417947499808674998265Ratregion
42692D4Rat25924546598291765983162Ratregion
42695D4Rat29119146161093861611129Ratregion
42696D4Rat25722546383612063836345Ratregion
42697D4Rat25621846440241164402629Ratregion
40910D4Rat15823545881290158813136Ratregion
41124D4Rat16221347066256470662777Ratregion
41846D4Rat25423545413006154130296Ratregion
41888D4Rat28224644183489541835141Ratregion
41902D4Rat25320944820755248207761Ratregion
43792D4Got2817945153647651536655Ratregion
43795D4Wox1010745960331959603426Ratregion
43798D4Got4017946193275561932934Ratregion
43807D4Got4822646776724267767468Ratregion
60806D4Wox713147375268073752811Ratregion
60438D4Got3026545210722052107485Ratregion
69532D4Uwm313446530019365300327Ratregion
629591D4Hmgc116344769307847693241Ratregion
62480D4Uia218247033107270331254Ratregion
1627601D4Got20820646918071469180920Ratregion
1628130D4Got27913547542951575429650Ratregion
1639418D4Got3616445796617957966343Ratregion
1639433D4Got30314545678023556780380Ratregion
1635866D4Got20718647306522773065413Ratregion
1634619D4Got25013444372896743729101Ratregion
7387228rs8168428044141315141413151Ratregion
5026758RH13341918246168760561687787Ratregion
5029563BE09550915346826873468268887Ratregion
5035282BF38772015144138900541389156Ratregion
5030681BI30178416045384387653844036Ratregion
5040724RH12844720945910845659108665Ratregion
5041506RH12889621246831421368314425Ratregion
5045160RH13101860446880330268803906Ratregion
5047662RH13245620346802956668029769Ratregion
5049772RH13367349247175794771758439Ratregion
5077590RH13984420644390733243907538Ratregion
5079366RH14095555945801517658015735Ratregion
5079344RH14093775945934031859341077Ratregion
5074020RH13777313046929725669297386Ratregion
5061744BF40286714044456538444565524Ratregion
5066796AU04814631546424579364246108Ratregion
5067684AU04759717346312538463125557Ratregion
5068110AU04734212344742278347422906Ratregion
5070360AV27746613547216794772168082Ratregion
5069084AU04673520245796614157966343Ratregion
5065408AA95759320845857122858571436Ratregion
5061182BE11116478646024094960241735Ratregion
5064674BF39954820144159664741596848Ratregion
5082471BF41606225846893308268933340Ratregion
5084730AI17794412147076370170763822Ratregion
5084344AI23371918447056839470568578Ratregion
5084936AI23677221844636934746369565Ratregion
5087745Cpa26746022626260226529Ratregion
5085312BQ20052616046007283060072990Ratregion
5090117AU04956028545322849753228782Ratregion
5089003AU04889715946407679164076950Ratregion
5082773BF39006719145098600650986197Ratregion
5086735AA81915414946626111666261265Ratregion
5085988AW53595220046913647769136677Ratregion
5507451REN10342226744467416444674431Ratregion
5507533REN11485826645781438057814646Ratregion
5504520PMC263877P196645358069353581659Ratregion
5504296D7S2119E10647000211270002218Ratregion
5503097ARF561745800409658004713Ratregion
5501691CHRM259446611106666111660Ratregion
5501754MARC_11525-11526:1001518036:177645893171058932486Ratregion
5507397REN10220332244441607544416397Ratregion
Position Markers

Flank 1: (D4Arb26)
Rat AssemblyChrPosition (strand)Source
GRCr8440,471,453 - 40,471,596 (+)Marker Load Pipeline
mRatBN7.2439,505,275 - 39,505,418 (+)MAPPER
Rnor_6.0437,685,175 - 37,685,317NCBI
Rnor_5.0437,534,124 - 37,534,266UniSTS
RGSC_v3.4436,592,628 - 36,592,771RGD
RGSC_v3.4436,592,629 - 36,592,771UniSTS
Celera434,949,819 - 34,949,961UniSTS
RGSC_v3.1436,711,168 - 36,711,311RGD
RH 2.0 Map4299.7RGD
SHRSP x BN Map421.52RGD
Cytogenetic Map4 RGD
Peak: (D4Mgh15)
Rat AssemblyChrPosition (strand)Source
GRCr8457,664,252 - 57,664,389 (+)Marker Load Pipeline
mRatBN7.2456,698,790 - 56,698,927 (+)MAPPER
Rnor_6.0455,375,865 - 55,376,001NCBI
Rnor_5.0455,118,586 - 55,118,722UniSTS
RGSC_v3.4454,879,077 - 54,879,214RGD
RGSC_v3.4454,879,078 - 54,879,214UniSTS
Celera451,815,819 - 51,815,955UniSTS
RGSC_v3.1455,129,235 - 55,129,371RGD
RH 3.4 Map4301.72RGD
RH 3.4 Map4301.72UniSTS
Cytogenetic Map4q22UniSTS
Flank 2: (D4Arb30)
Rat AssemblyChrPosition (strand)Source
GRCr8475,939,858 - 75,939,996 (+)Marker Load Pipeline
RGSC_v3.4473,972,454 - 73,972,591UniSTS
RGSC_v3.4473,972,453 - 73,972,591RGD
Celera469,789,851 - 69,789,980UniSTS
RGSC_v3.1474,248,583 - 74,248,721RGD
RH 3.4 Map4465.4RGD
RH 3.4 Map4465.4UniSTS
RH 2.0 Map4512.0RGD
SHRSP x BN Map437.38RGD
FHH x ACI Map445.77RGD
Cytogenetic Map4q24UniSTS


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2302371Stl22Serum triglyceride level QTL 225.15blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)41308014658080146Rat
1358352Srcrt3Stress Responsive Cort QTL 32.29blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)439431983123203361Rat
1549843Bw53Body weight QTL 530.0001body mass (VT:0001259)body weight gain (CMO:0000420)459753119104753119Rat
61445Strs3Sensitivity to stroke QTL 33cerebrum integrity trait (VT:0010549)post-insult time to onset of cerebrovascular lesion (CMO:0002343)44140057786400577Rat
6893678Bw108Body weight QTL 1082.60.006body mass (VT:0001259)body weight (CMO:0000012)44442502489425024Rat
10755501Bp390Blood pressure QTL 3902.5arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)427730518170099664Rat
1357342Bw40Body weight QTL 400.001body mass (VT:0001259)body weight (CMO:0000012)474233320119233320Rat
1358363Sradr3Stress Responsive Adrenal Weight QTL 36.19adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)458817672103817672Rat
61330Eau1Experimental allergic uveoretinitis QTL 10.0003uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)426234499134199155Rat
70167Bw22Body weight QTL 223.1body mass (VT:0001259)body weight (CMO:0000012)474233320119233320Rat
10450825Scl78Serum cholesterol level QTL 783.70.01blood VLDL cholesterol amount (VT:0005144)blood low density lipoprotein cholesterol level (CMO:0000053)45014392658080146Rat
1549839Bw52Body weight QTL 520.0001body mass (VT:0001259)body weight gain (CMO:0000420)471647492116647492Rat
61336Bp21Blood pressure QTL 214.6arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)45808014680212111Rat
2313401Anxrr27Anxiety related response QTL 27aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)41890069763900697Rat
10450821Scl77Serum cholesterol level QTL 774.10.01blood VLDL cholesterol amount (VT:0005144)blood high density lipoprotein cholesterol level (CMO:0000052)45014392658080146Rat
10450818Scl76Serum cholesterol level QTL 763.60.01blood VLDL cholesterol amount (VT:0005144)blood high density lipoprotein cholesterol level (CMO:0000052)45014392658080146Rat
631209Bw2Body weight QTL24.2retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)4145429897Rat
6909128Pancm4Pancreatic morphology QTL 411.35pancreas mass (VT:0010144)pancreas wet weight (CMO:0000626)427862204126119996Rat
61475Aia2Adjuvant induced arthritis QTL 25.8joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)44047145375939996Rat
8694439Bw168Body weight QTL 1689.570.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)44140060386400603Rat
61476Aia3Adjuvant induced arthritis QTL 33.9joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)475939858140508796Rat
1641919Alc22Alcohol consumption QTL 220.0005drinking behavior trait (VT:0001422)ethanol drink intake rate (CMO:0001407)465060960127749483Rat
8655906Rf60Renal function QTL 603.8blood creatinine amount (VT:0005328)creatinine clearance (CMO:0000765)43044896182336920Rat
2317577Eae24Experimental allergic encephalomyelitis QTL 24nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis severity score (CMO:0001419)46796011273752811Rat
7387227Uae40Urinary albumin excretion QTL 402.90.0052urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)41891315163913151Rat
6909122Insul22Insulin level QTL 224.63blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)42786220462997402Rat
1300156Bp179Blood pressure QTL 1792.85arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)43943198340490708Rat
1354660Salc1Saline consumption QTL 111.26drinking behavior trait (VT:0001422)saline drink intake rate (CMO:0001627)445429897149763204Rat
70192BpQTLcluster5Blood pressure QTL cluster 54.183arterial blood pressure trait (VT:2000000)absolute change in mean arterial blood pressure (CMO:0000533)4163900697Rat
1298082Stresp4Stress response QTL 4blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)451085655113588029Rat
9590304Scort17Serum corticosterone level QTL 174.960.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)41103870656038706Rat
2317588Eae27Experimental allergic encephalomyelitis QTL 27nervous system integrity trait (VT:0010566)percentage of study population developing experimental autoimmune encephalomyelitis during a period of time (CMO:0001047)469036742114036742Rat
1300139Hrtrt6Heart rate QTL 62.85heart pumping trait (VT:2000009)heart rate (CMO:0000002)440490442117737312Rat
70200Alc18Alcohol consumption QTL 189.2drinking behavior trait (VT:0001422)ethanol intake volume to total fluid intake volume ratio (CMO:0001591)457613339151163960Rat
4889969Bss96Bone structure and strength QTL 964.9tibia size trait (VT:0100001)tibia cortical bone volume (CMO:0001725)457613242102613242Rat
11530004Niddm71Non-insulin dependent diabetes mellitus QTL 710.001blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)43353881653719714Rat
1354665Stl10Serum triglyceride level QTL 103.57blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)42228845345429897Rat
2316958Gluco58Glucose level QTL 5810blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)412212457182430611Rat
1300141Bp178Blood pressure QTL 178arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)41075870140490708Rat
4889972Bss97Bone structure and strength QTL 975.6tibia size trait (VT:0100001)tibia total bone volume (CMO:0001724)457613242102613242Rat
6478684Anxrr30Anxiety related response QTL 300.00087defecation behavior trait (VT:0010462)defecation rate (CMO:0000998)464084079109084079Rat
2303585Bw86Body weight QTL 864body mass (VT:0001259)body weight (CMO:0000012)41564430960644309Rat
5685012Bmd87Bone mineral density QTL 875.1tibia mineral mass (VT:1000283)bone mineral content (CMO:0001554)43511329080113290Rat
5685009Bmd86Bone mineral density QTL 863.7tibia mineral mass (VT:1000283)bone mineral density (CMO:0001226)457613242102613242Rat
8552906Pigfal3Plasma insulin-like growth factor 1 level QTL 3blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)41103870656038706Rat
8655949Rf62Renal function QTL 6222blood urea nitrogen amount (VT:0005265)plasma urea nitrogen level (CMO:0000586)43539660045429897Rat
1331807Rf31Renal function QTL 312.988urine potassium amount (VT:0010539)urine potassium level (CMO:0000128)44049044275726188Rat
6478766Anxrr47Anxiety related response QTL 470.09637locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)41103870656038706Rat
634311Sach7Saccharin preference QTL 7taste sensitivity trait (VT:0001986)saccharin intake volume to total fluid intake volume ratio (CMO:0001601)45807987582597589Rat
70222Eae2Experimental allergic encephalomyelitis QTL 24.3nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)42228845340471598Rat
2306547Iddm38Insulin dependent diabetes mellitus QTL 38blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)468353567113353567Rat
738009Sach4Saccharine consumption QTL 44.90.000016consumption behavior trait (VT:0002069)saccharin intake volume to total fluid intake volume ratio (CMO:0001601)460916264184426481Rat
631642Stl2Serum triglyceride level QTL 23.3blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)4589457557613242Rat
6478769Anxrr48Anxiety related response QTL 480.02514locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)41103870656038706Rat
631261Tcas3Tongue tumor susceptibility QTL 36.88tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)41170660492690519Rat
6478772Anxrr49Anxiety related response QTL 490.15488defecation behavior trait (VT:0010462)defecation rate (CMO:0000998)464084079109084079Rat
631646Stl4Serum triglyceride level QTL 46.50.0001blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)474169813134199155Rat
2312569Pur19Proteinuria QTL 193.40.001urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)459836842104836842Rat
8655961Kidm43Kidney mass QTL 4318kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)43726957782269577Rat
61406Scwia1Streptococcal cell wall induced arthritis QTL 12.3joint integrity trait (VT:0010548)experimental arthritis severity measurement (CMO:0001459)475939858140508796Rat
1354612Foco1Food consumption QTL 18.87eating behavior trait (VT:0001431)food intake rate (CMO:0000427)445429897149763204Rat
634344Hcar7Hepatocarcinoma resistance QTL 77.8liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)46104105794638356Rat
8694374Bw155Body weight QTL 1553.390.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)41103870656038706Rat
2303168Bp330Blood pressure QTL 3304.250.017arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)45889999148002343Rat
738031Alc14Alcohol consumption QTL 147.60.00003consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)460916264174095838Rat
2290374Gluco32Glucose level QTL 326.27blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)43814419445429897Rat
61412Pia2Pristane induced arthritis QTL 23.9joint integrity trait (VT:0010548)post-insult time to onset of experimental arthritis (CMO:0001450)42228845363245191Rat
8552807Vie4Viral induced encephalitis QTL 47.3brain integrity trait (VT:0010579)encephalitis incidence/prevalence measurement (CMO:0002361)41890069763900697Rat
6478724Anxrr35Anxiety related response QTL 350.00449defecation behavior trait (VT:0010462)defecation measurement (CMO:0000997)41103870656038706Rat
61415Eae11Experimental allergic encephalomyelitis QTL 112.9nervous system integrity trait (VT:0010566)post-insult time to onset of experimental autoimmune encephalomyelitis (CMO:0001422)4140471598Rat
619616Bp79Blood pressure QTL 790.0292arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)4588999950889999Rat
1576305Emca6Estrogen-induced mammary cancer QTL 65.8mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)445429709157555683Rat
631651Bp124Blood pressure QTL 1243arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)464209744109209744Rat
61418Pia5Pristane induced arthritis QTL 54.5joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)463245026129846354Rat
738016Alc16Alcohol consumption QTL 163.60.00015consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)460916264184426481Rat
1558651Swd3Spike wave discharge measurement QTL 34.620.000024brain electrophysiology trait (VT:0010557)brain spike-and-wave discharge frequency (CMO:0001742)44140057786400577Rat
4889511Gluco61Glucose level QTL 614.70.001blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)43814419441835141Rat
1358203Stl19Serum triglyceride level QTL 192.80.002blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)42192515166925151Rat
1641833Alc21Alcohol consumption QTL 218.60.0001drinking behavior trait (VT:0001422)ethanol drink intake rate (CMO:0001407)457664252127749483Rat
631674Iddm14Insulin dependent diabetes mellitus QTL 14blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)465495851159259805Rat
631546Bp86Blood pressure QTL 863.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)45807987592690793Rat
6478743Anxrr40Anxiety related response QTL 400.83076defecation behavior trait (VT:0010462)defecation rate (CMO:0000998)464084079109084079Rat
61434Cia3Collagen induced arthritis QTL 34.8joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)463224393108224393Rat
7394826Bw126Body weight QTL 1260.002body mass (VT:0001259)body weight gain (CMO:0000420)46390045888813920Rat
12798520Anxrr55Anxiety related response QTL 554.450.01locomotor behavior trait (VT:0001392)number of rearing movements with lid-pushing in an experimental apparatus (CMO:0002715)433538597116185060Rat
631671Iddm11Insulin dependent diabetes mellitus QTL 113.60.0012blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)45960331980216952Rat


Additional Information

Database Acc Id Source(s)
NCBI Gene Aia2

RGD Curation Notes
Note Type Note Reference
qtl_gene whole genome analysis using PGMapper revealed Irf5 and Ptn as RA associated genes and Irf5 as RA associated polymorphism either in coding or regulatory region 2300074
qtl_gene 248 known and 53 novel genes were found in an analysis based on PubMed and OMIM data 2307198
qtl_general transfer of this QTL to congenic and subcongenic strains had no effect on arthritis severity 629560