Foxp2 (forkhead box P2) - Rat Genome Database

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Gene: Foxp2 (forkhead box P2) Rattus norvegicus
Analyze
Symbol: Foxp2
Name: forkhead box P2
RGD ID: 1559697
Description: Enables androgen receptor binding activity. Involved in forebrain development; innate vocalization behavior; and response to testosterone. Predicted to be active in nucleus. Human ortholog(s) of this gene implicated in several diseases, including attention deficit hyperactivity disorder; autism spectrum disorder (multiple); communication disorder (multiple); dyslexia; and major depressive disorder. Orthologous to human FOXP2 (forkhead box P2); INTERACTS WITH 1,3-dinitrobenzene; 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: Forkhead box protein P2; LOC500037; RGD1559697; similar to forkhead/winged-helix transcription factor 2
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2443,133,827 - 43,712,442 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl443,133,912 - 43,711,683 (+)Ensembl
Rnor_6.0441,364,441 - 41,944,685 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl441,364,441 - 41,942,023 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0440,956,160 - 41,530,231 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4440,719,812 - 40,977,517 (+)NCBIRGSC3.4rn4RGSC3.4
Celera438,465,580 - 39,042,946 (+)NCBICelera
Cytogenetic Map4q21NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2-dichloroethane  (ISO)
1,2-dimethylhydrazine  (ISO)
1,3-dinitrobenzene  (EXP)
2,2',4,4',5,5'-hexachlorobiphenyl  (ISO)
2,2',5,5'-tetrachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3,7,8-Tetrachlorodibenzofuran  (EXP)
3,3',4,4'-tetrachlorobiphenyl  (ISO)
aflatoxin B1  (EXP,ISO)
all-trans-retinoic acid  (ISO)
antirheumatic drug  (ISO)
aristolochic acid  (ISO)
arsenite(3-)  (ISO)
avobenzone  (ISO)
benzo[a]pyrene  (EXP,ISO)
benzo[a]pyrene diol epoxide I  (ISO)
benzo[e]pyrene  (ISO)
bis(2-ethylhexyl) phthalate  (EXP,ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
cadmium dichloride  (ISO)
carbamazepine  (ISO)
casticin  (ISO)
chlordecone  (ISO)
choline  (ISO)
clozapine  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
coumestrol  (ISO)
Cuprizon  (EXP)
cyclosporin A  (ISO)
DDT  (EXP)
diazinon  (EXP)
dichloroacetic acid  (ISO)
dorsomorphin  (ISO)
Enterolactone  (ISO)
folic acid  (ISO)
formaldehyde  (ISO)
genistein  (ISO)
hydralazine  (ISO)
L-methionine  (ISO)
lead diacetate  (ISO)
manganese atom  (ISO)
manganese(0)  (ISO)
manganese(II) chloride  (ISO)
melphalan  (ISO)
methapyrilene  (ISO)
methyl methanesulfonate  (ISO)
N-methyl-4-phenylpyridinium  (ISO)
nickel atom  (ISO)
paracetamol  (EXP)
paraquat  (EXP)
PCB138  (ISO)
phencyclidine  (ISO)
phenobarbital  (ISO)
phenylmercury acetate  (ISO)
pirinixic acid  (ISO)
rotenone  (ISO)
SB 431542  (ISO)
silicon dioxide  (ISO)
silver atom  (ISO)
silver(0)  (ISO)
Stanolone benzoate  (EXP)
thimerosal  (ISO)
triphenyl phosphate  (EXP)
triptonide  (ISO)
tris(2-butoxyethyl) phosphate  (ISO)
valproic acid  (ISO)
vorinostat  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References

References - curated
1. Bowers JM, etal., Endocrinology. 2014 Dec;155(12):4881-94. doi: 10.1210/en.2014-1486. Epub 2014 Sep 23.
2. Bowers JM, etal., J Neurosci. 2013 Feb 20;33(8):3276-83. doi: 10.1523/JNEUROSCI.0425-12.2013.
3. Fatemi SH, etal., Schizophr Res. 2008 Feb;99(1-3):56-70. doi: 10.1016/j.schres.2007.11.018. Epub 2008 Jan 9.
4. Feuk L, etal., Am J Hum Genet. 2006 Nov;79(5):965-72. Epub 2006 Sep 27.
5. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
6. Gauthier J, etal., Am J Med Genet A. 2003 Apr 15;118A(2):172-5.
7. Gong X, etal., Am J Med Genet B Neuropsychiatr Genet. 2004 May 15;127B(1):113-6.
8. Lai CS, etal., Nature. 2001 Oct 4;413(6855):519-23.
9. Li H, etal., Brain Dev. 2005 Apr;27(3):207-10.
10. Li T, etal., World J Biol Psychiatry. 2013 Mar;14(2):146-50. doi: 10.3109/15622975.2011.615860. Epub 2012 Mar 9.
11. MacDermot KD, etal., Am J Hum Genet. 2005 Jun;76(6):1074-80. Epub 2005 Apr 22.
12. Marui T, etal., Neurosci Res. 2005 Sep;53(1):91-4.
13. OMIM Disease Annotation Pipeline
14. Park Y, etal., J Child Neurol. 2014 Dec;29(12):NP207-11. doi: 10.1177/0883073813511301. Epub 2013 Dec 18.
15. RGD automated data pipeline
16. RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
17. RGD automated import pipeline for gene-chemical interactions
18. RGD comprehensive gene curation
19. Ribases M, etal., Psychiatr Genet. 2012 Aug;22(4):155-60. doi: 10.1097/YPG.0b013e328353957e.
20. Sanjuan J, etal., Psychiatr Genet. 2006 Apr;16(2):67-72.
21. Takahashi K, etal., J Neurosci Res. 2003 Jul 1;73(1):61-72.
22. Tolosa A, etal., BMC Med Genet. 2010 Jul 22;11:114. doi: 10.1186/1471-2350-11-114.
23. Vernes SC, etal., Eur J Hum Genet. 2009 Oct;17(10):1354-8. doi: 10.1038/ejhg.2009.43. Epub 2009 Apr 8.
24. Vernes SC, etal., Hum Mol Genet. 2006 Nov 1;15(21):3154-67. Epub 2006 Sep 19.
25. Wassink TH, etal., Am J Med Genet. 2002 Jul 8;114(5):566-9.
26. Wilcke A, etal., Eur J Hum Genet. 2012 Feb;20(2):224-9. doi: 10.1038/ejhg.2011.160. Epub 2011 Sep 7.
27. Zhao Y, etal., Psychiatry Clin Neurosci. 2010 Oct;64(5):565-73. doi: 10.1111/j.1440-1819.2010.02123.x.
Additional References at PubMed
PMID:11358962   PMID:11872605   PMID:14701752   PMID:15057822   PMID:15983371   PMID:16407075   PMID:17428829   PMID:17619227   PMID:18239190   PMID:18987363   PMID:19319003   PMID:21108936  
PMID:24893771   PMID:25609649   PMID:29414420   PMID:31545395   PMID:31887421  


Genomics

Comparative Map Data
Foxp2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2443,133,827 - 43,712,442 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl443,133,912 - 43,711,683 (+)Ensembl
Rnor_6.0441,364,441 - 41,944,685 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl441,364,441 - 41,942,023 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0440,956,160 - 41,530,231 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4440,719,812 - 40,977,517 (+)NCBIRGSC3.4rn4RGSC3.4
Celera438,465,580 - 39,042,946 (+)NCBICelera
Cytogenetic Map4q21NCBI
FOXP2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl7114,086,327 - 114,693,772 (+)EnsemblGRCh38hg38GRCh38
GRCh387114,086,327 - 114,693,765 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh377113,726,382 - 114,333,820 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 367113,842,288 - 114,118,328 (+)NCBINCBI36hg18NCBI36
Build 347113,649,226 - 113,924,106NCBI
Celera7108,532,810 - 109,140,335 (+)NCBI
Cytogenetic Map7q31.1NCBI
HuRef7108,089,788 - 108,698,059 (+)NCBIHuRef
CHM1_17113,659,668 - 114,267,158 (+)NCBICHM1_1
CRA_TCAGchr7v27113,121,523 - 113,729,058 (+)NCBI
Foxp2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39614,901,348 - 15,441,976 (+)NCBIGRCm39mm39
GRCm39 Ensembl614,901,348 - 15,441,976 (+)Ensembl
GRCm38614,901,349 - 15,441,977 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl614,901,349 - 15,441,977 (+)EnsemblGRCm38mm10GRCm38
MGSCv37614,851,349 - 15,391,977 (+)NCBIGRCm37mm9NCBIm37
MGSCv36614,851,390 - 15,391,977 (+)NCBImm8
Celera614,991,559 - 15,532,353 (+)NCBICelera
Cytogenetic Map6A1NCBI
Foxp2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543220,334,237 - 20,589,352 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495543220,205,369 - 20,589,608 (+)NCBIChiLan1.0ChiLan1.0
FOXP2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.17119,077,322 - 119,346,956 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl7119,077,332 - 119,343,893 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v07106,040,118 - 106,648,741 (+)NCBIMhudiblu_PPA_v0panPan3
FOXP2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11453,311,214 - 53,864,056 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1453,312,045 - 53,862,655 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1452,705,645 - 53,260,684 (+)NCBI
ROS_Cfam_1.01453,348,680 - 53,904,109 (+)NCBI
UMICH_Zoey_3.11453,380,738 - 53,934,984 (+)NCBI
UNSW_CanFamBas_1.01453,066,607 - 53,621,520 (+)NCBI
UU_Cfam_GSD_1.01453,439,813 - 53,995,147 (+)NCBI
Foxp2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440511842,028,555 - 42,570,609 (+)NCBI
SpeTri2.0NW_0049365894,120,162 - 4,661,258 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FOXP2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1831,336,931 - 31,888,899 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11831,335,102 - 31,890,523 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21833,665,884 - 33,729,395 (-)NCBISscrofa10.2Sscrofa10.2susScr3
FOXP2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12182,799,147 - 83,392,568 (+)NCBI
ChlSab1.1 Ensembl2183,129,308 - 83,389,483 (+)Ensembl
Vero_WHO_p1.0NW_02366604220,372,419 - 20,967,513 (-)NCBI
Foxp2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248274,813,203 - 5,086,326 (-)NCBI

Position Markers
BE110309  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2443,710,692 - 43,710,875 (+)MAPPERmRatBN7.2
Rnor_6.0441,941,033 - 41,941,215NCBIRnor6.0
Rnor_5.0441,528,484 - 41,528,666UniSTSRnor5.0
RGSC_v3.4440,980,051 - 40,980,233UniSTSRGSC3.4
Celera439,041,956 - 39,042,138UniSTS
RH 3.4 Map4276.6UniSTS
Cytogenetic Map4q21UniSTS
BF402867  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2443,599,366 - 43,599,506 (+)MAPPERmRatBN7.2
Rnor_6.0441,829,714 - 41,829,853NCBIRnor6.0
Rnor_5.0441,416,857 - 41,416,996UniSTSRnor5.0
RGSC_v3.4440,868,732 - 40,868,871UniSTSRGSC3.4
Celera438,930,528 - 38,930,667UniSTS
RH 3.4 Map4279.1UniSTS
Cytogenetic Map4q21UniSTS
AU048259  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2443,428,077 - 43,428,279 (+)MAPPERmRatBN7.2
Rnor_6.0441,658,435 - 41,658,636NCBIRnor6.0
Rnor_5.0441,245,446 - 41,245,647UniSTSRnor5.0
RGSC_v3.4440,697,453 - 40,697,654UniSTSRGSC3.4
Celera438,759,521 - 38,759,722UniSTS
Cytogenetic Map4q21UniSTS
stSG611484  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2443,667,563 - 43,668,821 (+)MAPPERmRatBN7.2
Rnor_6.0441,897,910 - 41,899,167NCBIRnor6.0
Rnor_5.0441,485,211 - 41,486,468UniSTSRnor5.0
RGSC_v3.4440,936,928 - 40,938,185UniSTSRGSC3.4
Celera438,998,862 - 39,000,119UniSTS
Cytogenetic Map4q21UniSTS
stSG611494  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2443,679,044 - 43,680,142 (+)MAPPERmRatBN7.2
Rnor_6.0441,909,385 - 41,910,482NCBIRnor6.0
Rnor_5.0441,496,686 - 41,497,783UniSTSRnor5.0
RGSC_v3.4440,948,403 - 40,949,500UniSTSRGSC3.4
Celera439,010,333 - 39,011,429UniSTS
Cytogenetic Map4q21UniSTS
stSG611518  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2443,705,220 - 43,705,464 (+)MAPPERmRatBN7.2
Rnor_6.0441,935,561 - 41,935,804NCBIRnor6.0
Rnor_5.0441,523,012 - 41,523,255UniSTSRnor5.0
RGSC_v3.4440,974,579 - 40,974,822UniSTSRGSC3.4
Celera439,036,483 - 39,036,726UniSTS
Cytogenetic Map4q21UniSTS
stSG611519  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2443,705,469 - 43,706,706 (+)MAPPERmRatBN7.2
Rnor_6.0441,935,810 - 41,937,046NCBIRnor6.0
Rnor_5.0441,523,261 - 41,524,497UniSTSRnor5.0
RGSC_v3.4440,974,828 - 40,976,064UniSTSRGSC3.4
Celera439,036,732 - 39,037,968UniSTS
Cytogenetic Map4q21UniSTS
stSG611520  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2443,706,686 - 43,708,122 (+)MAPPERmRatBN7.2
Rnor_6.0441,937,027 - 41,938,462NCBIRnor6.0
Rnor_5.0441,524,478 - 41,525,913UniSTSRnor5.0
RGSC_v3.4440,976,045 - 40,977,480UniSTSRGSC3.4
Celera439,037,949 - 39,039,384UniSTS
Cytogenetic Map4q21UniSTS
MARC_13931-13932:1007579490:1  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2443,710,204 - 43,710,694 (+)MAPPERmRatBN7.2
Rnor_6.0441,940,545 - 41,941,034NCBIRnor6.0
Rnor_5.0441,527,996 - 41,528,485UniSTSRnor5.0
RGSC_v3.4440,979,563 - 40,980,052UniSTSRGSC3.4
Celera439,041,468 - 39,041,957UniSTS
Cytogenetic Map4q21UniSTS
ECD00202  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2443,678,037 - 43,678,983 (+)MAPPERmRatBN7.2
Rnor_6.0441,908,378 - 41,909,323NCBIRnor6.0
Rnor_5.0441,495,679 - 41,496,624UniSTSRnor5.0
RGSC_v3.4440,947,396 - 40,948,341UniSTSRGSC3.4
Celera439,009,326 - 39,010,271UniSTS
Cytogenetic Map4q21UniSTS
ECD00361  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2443,680,012 - 43,680,924 (+)MAPPERmRatBN7.2
Rnor_6.0441,910,353 - 41,911,264NCBIRnor6.0
Rnor_5.0441,497,654 - 41,498,565UniSTSRnor5.0
RGSC_v3.4440,949,371 - 40,950,282UniSTSRGSC3.4
Celera439,011,301 - 39,012,211UniSTS
Cytogenetic Map4q21UniSTS
ECD01298  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2443,679,030 - 43,679,914 (+)MAPPERmRatBN7.2
Rnor_6.0441,909,371 - 41,910,254NCBIRnor6.0
Rnor_5.0441,496,672 - 41,497,555UniSTSRnor5.0
RGSC_v3.4440,948,389 - 40,949,272UniSTSRGSC3.4
Celera439,010,319 - 39,011,202UniSTS
Cytogenetic Map4q21UniSTS
ECD02857  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2443,708,047 - 43,708,898 (+)MAPPERmRatBN7.2
Rnor_6.0441,938,388 - 41,939,238NCBIRnor6.0
Rnor_5.0441,525,839 - 41,526,689UniSTSRnor5.0
RGSC_v3.4440,977,406 - 40,978,256UniSTSRGSC3.4
Celera439,039,310 - 39,040,160UniSTS
Cytogenetic Map4q21UniSTS
ECD03612  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2443,450,369 - 43,451,172 (+)MAPPERmRatBN7.2
Rnor_6.0441,680,720 - 41,681,522NCBIRnor6.0
Rnor_5.0441,267,842 - 41,268,644UniSTSRnor5.0
RGSC_v3.4440,719,738 - 40,720,540UniSTSRGSC3.4
Celera438,781,887 - 38,782,689UniSTS
Cytogenetic Map4q21UniSTS
REN101860  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2443,390,516 - 43,390,764 (+)MAPPERmRatBN7.2
Rnor_6.0441,621,001 - 41,621,248NCBIRnor6.0
Rnor_5.0441,207,901 - 41,208,148UniSTSRnor5.0
RGSC_v3.4440,660,019 - 40,660,266UniSTSRGSC3.4
Celera438,722,024 - 38,722,271UniSTS
Cytogenetic Map4q21UniSTS
REN101856  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2443,389,683 - 43,389,951 (+)MAPPERmRatBN7.2
Rnor_6.0441,620,168 - 41,620,435NCBIRnor6.0
Rnor_5.0441,207,068 - 41,207,335UniSTSRnor5.0
RGSC_v3.4440,659,186 - 40,659,453UniSTSRGSC3.4
Celera438,721,191 - 38,721,458UniSTS
Cytogenetic Map4q21UniSTS
REN102194  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2443,448,006 - 43,448,231 (+)MAPPERmRatBN7.2
Rnor_6.0441,678,357 - 41,678,581NCBIRnor6.0
Rnor_5.0441,265,462 - 41,265,686UniSTSRnor5.0
RGSC_v3.4440,717,375 - 40,717,599UniSTSRGSC3.4
Celera438,779,602 - 38,779,826UniSTS
Cytogenetic Map4q21UniSTS
REN102201  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2443,449,596 - 43,449,858 (+)MAPPERmRatBN7.2
Rnor_6.0441,679,947 - 41,680,208NCBIRnor6.0
Rnor_5.0441,267,052 - 41,267,313UniSTSRnor5.0
RGSC_v3.4440,718,965 - 40,719,226UniSTSRGSC3.4
Celera438,781,192 - 38,781,453UniSTS
Cytogenetic Map4q21UniSTS
REN102202  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2443,449,834 - 43,450,085 (+)MAPPERmRatBN7.2
Rnor_6.0441,680,185 - 41,680,435NCBIRnor6.0
Rnor_5.0441,267,290 - 41,267,540UniSTSRnor5.0
RGSC_v3.4440,719,203 - 40,719,453UniSTSRGSC3.4
Celera438,781,430 - 38,781,680UniSTS
Cytogenetic Map4q21UniSTS
REN102203  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2443,450,057 - 43,450,379 (+)MAPPERmRatBN7.2
Rnor_6.0441,680,408 - 41,680,729NCBIRnor6.0
Rnor_5.0441,267,513 - 41,267,851UniSTSRnor5.0
RGSC_v3.4440,719,426 - 40,719,747UniSTSRGSC3.4
Celera438,781,653 - 38,781,896UniSTS
Cytogenetic Map4q21UniSTS
REN102204  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2443,450,373 - 43,450,622 (+)MAPPERmRatBN7.2
Rnor_6.0441,680,724 - 41,680,972NCBIRnor6.0
Rnor_5.0441,267,846 - 41,268,094UniSTSRnor5.0
RGSC_v3.4440,719,742 - 40,719,990UniSTSRGSC3.4
Celera438,781,891 - 38,782,139UniSTS
Cytogenetic Map4q21UniSTS
REN102208  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2443,451,279 - 43,451,582 (+)MAPPERmRatBN7.2
Rnor_6.0441,681,630 - 41,681,932NCBIRnor6.0
Rnor_5.0441,268,752 - 41,269,054UniSTSRnor5.0
RGSC_v3.4440,720,648 - 40,720,950UniSTSRGSC3.4
Celera438,782,797 - 38,783,099UniSTS
Cytogenetic Map4q21UniSTS
REN102214  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2443,452,712 - 43,452,976 (+)MAPPERmRatBN7.2
Rnor_6.0441,683,063 - 41,683,326NCBIRnor6.0
Rnor_5.0441,270,185 - 41,270,448UniSTSRnor5.0
RGSC_v3.4440,722,081 - 40,722,344UniSTSRGSC3.4
Celera438,784,230 - 38,784,493UniSTS
Cytogenetic Map4q21UniSTS
REN102213  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2443,452,479 - 43,452,735 (+)MAPPERmRatBN7.2
Rnor_6.0441,682,830 - 41,683,085NCBIRnor6.0
Rnor_5.0441,269,952 - 41,270,207UniSTSRnor5.0
RGSC_v3.4440,721,848 - 40,722,103UniSTSRGSC3.4
Celera438,783,997 - 38,784,252UniSTS
Cytogenetic Map4q21UniSTS
REN102215  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2443,452,958 - 43,453,200 (+)MAPPERmRatBN7.2
Rnor_6.0441,683,309 - 41,683,550NCBIRnor6.0
Rnor_5.0441,270,431 - 41,270,672UniSTSRnor5.0
RGSC_v3.4440,722,327 - 40,722,568UniSTSRGSC3.4
Celera438,784,476 - 38,784,717UniSTS
Cytogenetic Map4q21UniSTS
REN102218  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2443,453,590 - 43,453,848 (+)MAPPERmRatBN7.2
Rnor_6.0441,683,941 - 41,684,198NCBIRnor6.0
Rnor_5.0441,271,063 - 41,271,320UniSTSRnor5.0
RGSC_v3.4440,722,959 - 40,723,216UniSTSRGSC3.4
Celera438,785,108 - 38,785,365UniSTS
Cytogenetic Map4q21UniSTS
REN102219  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2443,453,829 - 43,454,073 (+)MAPPERmRatBN7.2
Rnor_6.0441,684,180 - 41,684,423NCBIRnor6.0
Rnor_5.0441,271,302 - 41,271,545UniSTSRnor5.0
RGSC_v3.4440,723,198 - 40,723,441UniSTSRGSC3.4
Celera438,785,347 - 38,785,590UniSTS
Cytogenetic Map4q21UniSTS
REN102239  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2443,458,320 - 43,458,582 (+)MAPPERmRatBN7.2
Rnor_6.0441,688,667 - 41,688,928NCBIRnor6.0
Rnor_5.0441,275,789 - 41,276,050UniSTSRnor5.0
RGSC_v3.4440,727,685 - 40,727,946UniSTSRGSC3.4
Celera438,789,840 - 38,790,101UniSTS
Cytogenetic Map4q21UniSTS
REN102256  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2443,461,921 - 43,462,171 (+)MAPPERmRatBN7.2
Rnor_6.0441,692,267 - 41,692,516NCBIRnor6.0
Rnor_5.0441,279,389 - 41,279,638UniSTSRnor5.0
RGSC_v3.4440,731,285 - 40,731,534UniSTSRGSC3.4
Celera438,793,440 - 38,793,689UniSTS
Cytogenetic Map4q21UniSTS
REN102277  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2443,466,714 - 43,466,943 (+)MAPPERmRatBN7.2
Rnor_6.0441,697,060 - 41,697,288NCBIRnor6.0
Rnor_5.0441,284,182 - 41,284,410UniSTSRnor5.0
RGSC_v3.4440,736,078 - 40,736,306UniSTSRGSC3.4
Celera438,798,233 - 38,798,461UniSTS
Cytogenetic Map4q21UniSTS
REN102278  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2443,466,919 - 43,467,155 (+)MAPPERmRatBN7.2
Rnor_6.0441,697,265 - 41,697,500NCBIRnor6.0
Rnor_5.0441,284,387 - 41,284,622UniSTSRnor5.0
RGSC_v3.4440,736,283 - 40,736,518UniSTSRGSC3.4
Celera438,798,438 - 38,798,673UniSTS
Cytogenetic Map4q21UniSTS
REN102585  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2443,524,847 - 43,525,098 (+)MAPPERmRatBN7.2
Rnor_6.0441,755,195 - 41,755,445NCBIRnor6.0
Rnor_5.0441,342,317 - 41,342,567UniSTSRnor5.0
RGSC_v3.4440,794,213 - 40,794,463UniSTSRGSC3.4
Celera438,856,223 - 38,856,473UniSTS
Cytogenetic Map4q21UniSTS
REN102875  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2443,588,483 - 43,588,734 (+)MAPPERmRatBN7.2
Rnor_6.0441,818,827 - 41,819,077NCBIRnor6.0
Rnor_5.0441,405,970 - 41,406,220UniSTSRnor5.0
RGSC_v3.4440,857,845 - 40,858,095UniSTSRGSC3.4
Celera438,919,653 - 38,919,903UniSTS
Cytogenetic Map4q21UniSTS
REN103118  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2443,638,205 - 43,638,447 (+)MAPPERmRatBN7.2
Rnor_6.0441,868,552 - 41,868,793NCBIRnor6.0
Rnor_5.0441,455,853 - 41,456,094UniSTSRnor5.0
RGSC_v3.4440,907,570 - 40,907,811UniSTSRGSC3.4
Celera438,969,367 - 38,969,608UniSTS
Cytogenetic Map4q21UniSTS
REN103156  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2443,646,210 - 43,646,454 (+)MAPPERmRatBN7.2
Rnor_6.0441,876,557 - 41,876,800NCBIRnor6.0
Rnor_5.0441,463,858 - 41,464,101UniSTSRnor5.0
RGSC_v3.4440,915,575 - 40,915,818UniSTSRGSC3.4
Celera438,977,506 - 38,977,749UniSTS
Cytogenetic Map4q21UniSTS
REN103238  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2443,668,168 - 43,668,415 (+)MAPPERmRatBN7.2
Rnor_6.0441,898,515 - 41,898,761NCBIRnor6.0
Rnor_5.0441,485,816 - 41,486,062UniSTSRnor5.0
RGSC_v3.4440,937,533 - 40,937,779UniSTSRGSC3.4
Celera438,999,467 - 38,999,713UniSTS
Cytogenetic Map4q21UniSTS
REN103240  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2443,668,621 - 43,668,870 (+)MAPPERmRatBN7.2
Rnor_6.0441,898,968 - 41,899,216NCBIRnor6.0
Rnor_5.0441,486,269 - 41,486,517UniSTSRnor5.0
RGSC_v3.4440,937,986 - 40,938,234UniSTSRGSC3.4
Celera438,999,920 - 39,000,168UniSTS
Cytogenetic Map4q21UniSTS
REN103266  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2443,674,492 - 43,674,747 (+)MAPPERmRatBN7.2
Rnor_6.0441,904,833 - 41,905,087NCBIRnor6.0
Rnor_5.0441,492,134 - 41,492,388UniSTSRnor5.0
RGSC_v3.4440,943,851 - 40,944,105UniSTSRGSC3.4
Celera439,005,781 - 39,006,035UniSTS
Cytogenetic Map4q21UniSTS
REN103265  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2443,674,255 - 43,674,496 (+)MAPPERmRatBN7.2
Rnor_6.0441,904,596 - 41,904,836NCBIRnor6.0
Rnor_5.0441,491,897 - 41,492,137UniSTSRnor5.0
RGSC_v3.4440,943,614 - 40,943,854UniSTSRGSC3.4
Celera439,005,544 - 39,005,784UniSTS
Cytogenetic Map4q21UniSTS
REN103256  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2443,672,322 - 43,672,573 (+)MAPPERmRatBN7.2
Rnor_6.0441,902,663 - 41,902,913NCBIRnor6.0
Rnor_5.0441,489,964 - 41,490,214UniSTSRnor5.0
RGSC_v3.4440,941,681 - 40,941,931UniSTSRGSC3.4
Celera439,003,611 - 39,003,861UniSTS
Cytogenetic Map4q21UniSTS
REN103285  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2443,678,963 - 43,679,209 (+)MAPPERmRatBN7.2
Rnor_6.0441,909,304 - 41,909,549NCBIRnor6.0
Rnor_5.0441,496,605 - 41,496,850UniSTSRnor5.0
RGSC_v3.4440,948,322 - 40,948,567UniSTSRGSC3.4
Celera439,010,252 - 39,010,497UniSTS
Cytogenetic Map4q21UniSTS
REN103286  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2443,679,177 - 43,679,428 (+)MAPPERmRatBN7.2
Rnor_6.0441,909,518 - 41,909,768NCBIRnor6.0
Rnor_5.0441,496,819 - 41,497,069UniSTSRnor5.0
RGSC_v3.4440,948,536 - 40,948,786UniSTSRGSC3.4
Celera439,010,466 - 39,010,716UniSTS
Cytogenetic Map4q21UniSTS
REN103413  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2443,706,372 - 43,706,606 (+)MAPPERmRatBN7.2
Rnor_6.0441,936,713 - 41,936,946NCBIRnor6.0
Rnor_5.0441,524,164 - 41,524,397UniSTSRnor5.0
RGSC_v3.4440,975,731 - 40,975,964UniSTSRGSC3.4
Celera439,037,635 - 39,037,868UniSTS
Cytogenetic Map4q21UniSTS
REN103414  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2443,706,553 - 43,706,799 (+)MAPPERmRatBN7.2
Rnor_6.0441,936,894 - 41,937,139NCBIRnor6.0
Rnor_5.0441,524,345 - 41,524,590UniSTSRnor5.0
RGSC_v3.4440,975,912 - 40,976,157UniSTSRGSC3.4
Celera439,037,816 - 39,038,061UniSTS
Cytogenetic Map4q21UniSTS
REN103408  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2443,705,234 - 43,705,486 (+)MAPPERmRatBN7.2
Rnor_6.0441,935,575 - 41,935,826NCBIRnor6.0
Rnor_5.0441,523,026 - 41,523,277UniSTSRnor5.0
RGSC_v3.4440,974,593 - 40,974,844UniSTSRGSC3.4
Celera439,036,497 - 39,036,748UniSTS
Cytogenetic Map4q21UniSTS
REN103423  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2443,708,415 - 43,708,665 (+)MAPPERmRatBN7.2
Rnor_6.0441,938,756 - 41,939,005NCBIRnor6.0
Rnor_5.0441,526,207 - 41,526,456UniSTSRnor5.0
RGSC_v3.4440,977,774 - 40,978,023UniSTSRGSC3.4
Celera439,039,678 - 39,039,927UniSTS
Cytogenetic Map4q21UniSTS
REN103422  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2443,708,152 - 43,708,418 (+)MAPPERmRatBN7.2
Rnor_6.0441,938,493 - 41,938,758NCBIRnor6.0
Rnor_5.0441,525,944 - 41,526,209UniSTSRnor5.0
RGSC_v3.4440,977,511 - 40,977,776UniSTSRGSC3.4
Celera439,039,415 - 39,039,680UniSTS
Cytogenetic Map4q21UniSTS
REN103425  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2443,708,874 - 43,709,094 (+)MAPPERmRatBN7.2
Rnor_6.0441,939,215 - 41,939,434NCBIRnor6.0
Rnor_5.0441,526,666 - 41,526,885UniSTSRnor5.0
RGSC_v3.4440,978,233 - 40,978,452UniSTSRGSC3.4
Celera439,040,137 - 39,040,356UniSTS
Cytogenetic Map4q21UniSTS
REN103424  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2443,708,638 - 43,708,898 (+)MAPPERmRatBN7.2
Rnor_6.0441,938,979 - 41,939,238NCBIRnor6.0
Rnor_5.0441,526,430 - 41,526,689UniSTSRnor5.0
RGSC_v3.4440,977,997 - 40,978,256UniSTSRGSC3.4
Celera439,039,901 - 39,040,160UniSTS
Cytogenetic Map4q21UniSTS
REN103428  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2443,709,520 - 43,709,773 (+)MAPPERmRatBN7.2
Rnor_6.0441,939,861 - 41,940,113NCBIRnor6.0
Rnor_5.0441,527,312 - 41,527,564UniSTSRnor5.0
RGSC_v3.4440,978,879 - 40,979,131UniSTSRGSC3.4
Celera439,040,783 - 39,041,035UniSTS
Cytogenetic Map4q21UniSTS
REN103427  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2443,709,292 - 43,709,545 (+)MAPPERmRatBN7.2
Rnor_6.0441,939,633 - 41,939,885NCBIRnor6.0
Rnor_5.0441,527,084 - 41,527,336UniSTSRnor5.0
RGSC_v3.4440,978,651 - 40,978,903UniSTSRGSC3.4
Celera439,040,555 - 39,040,807UniSTS
Cytogenetic Map4q21UniSTS
REN103431  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2443,710,290 - 43,710,539 (+)MAPPERmRatBN7.2
Rnor_6.0441,940,631 - 41,940,879NCBIRnor6.0
Rnor_5.0441,528,082 - 41,528,330UniSTSRnor5.0
RGSC_v3.4440,979,649 - 40,979,897UniSTSRGSC3.4
Celera439,041,554 - 39,041,802UniSTS
Cytogenetic Map4q21UniSTS
REN103433  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2443,710,688 - 43,710,936 (+)MAPPERmRatBN7.2
Rnor_6.0441,941,029 - 41,941,276NCBIRnor6.0
Rnor_5.0441,528,480 - 41,528,727UniSTSRnor5.0
RGSC_v3.4440,980,047 - 40,980,294UniSTSRGSC3.4
Celera439,041,952 - 39,042,199UniSTS
Cytogenetic Map4q21UniSTS
ECD04080  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2443,461,202 - 43,462,003 (+)MAPPERmRatBN7.2
Rnor_6.0441,691,549 - 41,692,348NCBIRnor6.0
Rnor_5.0441,278,671 - 41,279,470UniSTSRnor5.0
RGSC_v3.4440,730,567 - 40,731,366UniSTSRGSC3.4
Celera438,792,722 - 38,793,521UniSTS
Cytogenetic Map4q21UniSTS
ECD04612  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2443,452,957 - 43,453,725 (+)MAPPERmRatBN7.2
Rnor_6.0441,683,308 - 41,684,075NCBIRnor6.0
Rnor_5.0441,270,430 - 41,271,197UniSTSRnor5.0
RGSC_v3.4440,722,326 - 40,723,093UniSTSRGSC3.4
Celera438,784,475 - 38,785,242UniSTS
Cytogenetic Map4q21UniSTS
ECD06693  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2443,645,695 - 43,646,405 (+)MAPPERmRatBN7.2
Rnor_6.0441,876,042 - 41,876,751NCBIRnor6.0
Rnor_5.0441,463,343 - 41,464,052UniSTSRnor5.0
RGSC_v3.4440,915,060 - 40,915,769UniSTSRGSC3.4
Celera438,976,991 - 38,977,700UniSTS
Cytogenetic Map4q21UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
634323Hc2Hypercalciuria QTL 22.15urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)421079645210796Rat
619616Bp79Blood pressure QTL 790.0292arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)4521460278882945Rat
2303168Bp330Blood pressure QTL 3304.250.017arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)45214602146446691Rat
2302371Stl22Serum triglyceride level QTL 225.15blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)4521829457114705Rat
1358203Stl19Serum triglyceride level QTL 192.80.002blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)4521829465958103Rat
631642Stl2Serum triglyceride level QTL 23.3blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)4521917856647776Rat
631209Bw2Body weight QTL24.2retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)4994088544463908Rat
6478724Anxrr35Anxiety related response QTL 350.00449defecation behavior trait (VT:0010462)defecation measurement (CMO:0000997)41008408955084089Rat
6478766Anxrr47Anxiety related response QTL 470.09637locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)41008408955084089Rat
6478769Anxrr48Anxiety related response QTL 480.02514locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)41008408955084089Rat
8694374Bw155Body weight QTL 1553.390.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)41008408955084089Rat
9590304Scort17Serum corticosterone level QTL 174.960.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)41008408955084089Rat
8552906Pigfal3Plasma insulin-like growth factor 1 level QTL 3blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)41008408955084089Rat
631261Tcas3Tongue tumor susceptibility QTL 36.88tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)41081417091360527Rat
2316958Gluco58Glucose level QTL 5810blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)411320076180699135Rat
2303585Bw86Body weight QTL 864body mass (VT:0001259)body weight (CMO:0000012)41467806559678065Rat
2313401Anxrr27Anxiety related response QTL 27aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)41793350862933508Rat
1354665Stl10Serum triglyceride level QTL 103.57blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)42133334344463908Rat
61412Pia2Pristane induced arthritis QTL 23.9joint integrity trait (VT:0010548)post-insult time to onset of experimental arthritis (CMO:0001450)42133334362278020Rat
6909122Insul22Insulin level QTL 224.63blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)42690728575585128Rat
6909128Pancm4Pancreatic morphology QTL 411.35pancreas mass (VT:0010144)pancreas wet weight (CMO:0000626)42690728575585128Rat
8655906Rf60Renal function QTL 603.8blood creatinine amount (VT:0005328)creatinine clearance (CMO:0000765)42949419581006281Rat
12798520Anxrr55Anxiety related response QTL 554.450.01locomotor behavior trait (VT:0001392)number of rearing movements with lid-pushing in an experimental apparatus (CMO:0002715)432583980114627242Rat
11530004Niddm71Non-insulin dependent diabetes mellitus QTL 710.001blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)43258419952754138Rat
8655949Rf62Renal function QTL 6222blood urea nitrogen amount (VT:0005265)plasma urea nitrogen level (CMO:0000586)43443011944463908Rat
8552782Vie1Viral induced encephalitis QTL 126.4brain integrity trait (VT:0010579)encephalitis incidence/prevalence measurement (CMO:0002361)43443048482490359Rat
8552801Bw143Body weight QTL 1437.3body mass (VT:0001259)change in body weight to body weight ratio (CMO:0002216)43443048482490359Rat
8552809Vie5Viral induced encephalitis QTL 525.3brain integrity trait (VT:0010579)encephalitis incidence/prevalence measurement (CMO:0002361)43443048482490359Rat
8655961Kidm43Kidney mass QTL 4318kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)436303261103194984Rat
2290374Gluco32Glucose level QTL 326.27blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)43717795044463908Rat
1358352Srcrt3Stress Responsive Cort QTL 32.29blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)438465774146803430Rat
61475Aia2Adjuvant induced arthritis QTL 25.8joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)43950527573892441Rat
1331807Rf31Renal function QTL 312.988urine potassium amount (VT:0010539)urine potassium level (CMO:0000128)43952426474726312Rat
1300139Hrtrt6Heart rate QTL 62.85heart pumping trait (VT:2000009)heart rate (CMO:0000002)439524264116179656Rat
61445Strs3Sensitivity to stroke QTL 33cerebrum integrity trait (VT:0010549)post-insult time to onset of cerebrovascular lesion (CMO:0002343)44043338885433388Rat
8694439Bw168Body weight QTL 1689.570.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)44043341485433414Rat
6893678Bw108Body weight QTL 1082.60.006body mass (VT:0001259)body weight (CMO:0000012)44345797688457976Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:176
Count of miRNA genes:120
Interacting mature miRNAs:138
Transcripts:ENSRNOT00000007759, ENSRNOT00000034028
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 1 2 2 2 53 8
Low 2 43 38 26 8 26 8 10 21 35 30 11 8
Below cutoff 15 11 10 11 1 3

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000087146   ⟹   ENSRNOP00000069190
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl443,133,912 - 43,711,683 (+)Ensembl
Rnor_6.0 Ensembl441,364,441 - 41,942,023 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000111171   ⟹   ENSRNOP00000091158
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl443,133,912 - 43,711,683 (+)Ensembl
RefSeq Acc Id: NM_001271104   ⟹   NP_001258033
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2443,133,912 - 43,711,683 (+)NCBI
Rnor_6.0441,364,441 - 41,942,023 (+)NCBI
Rnor_5.0440,956,160 - 41,530,231 (+)NCBI
Celera438,465,580 - 39,042,946 (+)NCBI
Sequence:
RefSeq Acc Id: XM_002729285   ⟹   XP_002729331
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2443,450,245 - 43,707,696 (+)NCBI
Rnor_6.0441,680,658 - 41,944,685 (+)NCBI
Rnor_5.0440,956,160 - 41,530,231 (+)NCBI
RGSC_v3.4440,719,812 - 40,977,517 (+)RGD
Sequence:
RefSeq Acc Id: XM_006236115   ⟹   XP_006236177
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2443,450,847 - 43,707,696 (+)NCBI
Rnor_6.0441,681,121 - 41,944,685 (+)NCBI
Rnor_5.0440,956,160 - 41,530,231 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008762718   ⟹   XP_008760940
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2443,133,833 - 43,712,442 (+)NCBI
Rnor_6.0441,364,746 - 41,944,685 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039108099   ⟹   XP_038964027
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2443,133,827 - 43,707,685 (+)NCBI
Reference Sequences
RefSeq Acc Id: XP_002729331   ⟸   XM_002729285
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: NP_001258033   ⟸   NM_001271104
- UniProtKB: P0CF24 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006236177   ⟸   XM_006236115
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_008760940   ⟸   XM_008762718
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: ENSRNOP00000069190   ⟸   ENSRNOT00000087146
RefSeq Acc Id: XP_038964027   ⟸   XM_039108099
- Peptide Label: isoform X2
RefSeq Acc Id: ENSRNOP00000091158   ⟸   ENSRNOT00000111171

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13692884
Promoter ID:EPDNEW_R3409
Type:initiation region
Name:Foxp2_1
Description:forkhead box P2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0441,364,358 - 41,364,418EPDNEW

Strain Variation

Strain Sequence Variants (Rnor 6.0)
ACI/EurMcwi (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/EurMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
ACI/EurMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
ACI/N (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
BBDP/Wor (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
BN-Lx/CubMcwi (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
BUF/N (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH2/CubMcwi (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH3/CubMcwi (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
Buf/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
COP/CrCrl (MCW & UW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
University of Wisconsin (Dr. James Shull)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Charles River Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)
DA/OlaHsd (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/DuCrl (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/N (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
F344/NRrrc (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
F344/Stm (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHH/EurMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
FHL/EurMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHL/EurMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
FXLE16/Stm (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE18/Stm (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GH/OmrMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
GK/FarMcwi (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GK/Ox (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
HXB10/IpcvMcwi (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB2/IpcvMcwi (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB20/IpcvMcwi (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB31/IpcvMcwi (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB4/IpcvMcwi (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/Crl (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEW/Crl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/NCrlBR (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEXF10A/StmMcwi (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF11/Stm (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1A/Stm (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1C/Stm (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF2B/Stm (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF3/Stm (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF4/Stm (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LH/MavRrrc (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LH/MavRrrcAek (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LL/MavRrrc (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LL/MavRrrcAek (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LN/MavRrrc (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LN/MavRrrcAek (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
M520/NRrrcMcwi (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MHS/Gib (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MNS/Gib (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MR/N (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MR/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
MWF/Hsd (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
PVG/Seac (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SBH/Ygl (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBH/Ygl sequenced by MCW
SBH/Ygl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SBN/Ygl (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBN/Ygl sequenced by MCW
SBN/Ygl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHR/NHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHR/OlalpcvMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/A3NCrl (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/Gcrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SR/JrHsd (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SR/JrHsd (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Harlan Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SR/JrHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/Jr (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/JrHsdMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SS/JrHsdMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SS/JrHsdMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WAG/Rij (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WAG/RijCrl (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/Gcrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/N (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
WKY/NCrl (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/NCrl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/NHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WN/N (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WN/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1559697 AgrOrtholog
Ensembl Genes ENSRNOG00000054508 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Protein ENSRNOP00000069190 ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000087146 ENTREZGENE, UniProtKB/Swiss-Prot
Gene3D-CATH 1.10.10.10 UniProtKB/Swiss-Prot
InterPro Fork_head_dom UniProtKB/Swiss-Prot
  FOXP-CC UniProtKB/Swiss-Prot
  TF_fork_head_CS_2 UniProtKB/Swiss-Prot
  WH-like_DNA-bd_sf UniProtKB/Swiss-Prot
  WH_DNA-bd_sf UniProtKB/Swiss-Prot
KEGG Report rno:500037 UniProtKB/Swiss-Prot
NCBI Gene 500037 ENTREZGENE
Pfam Forkhead UniProtKB/Swiss-Prot
  FOXP-CC UniProtKB/Swiss-Prot
PhenoGen Foxp2 PhenoGen
PRINTS FORKHEAD UniProtKB/Swiss-Prot
PROSITE FORK_HEAD_2 UniProtKB/Swiss-Prot
  FORK_HEAD_3 UniProtKB/Swiss-Prot
  ZINC_FINGER_C2H2_1 UniProtKB/Swiss-Prot
SMART SM00339 UniProtKB/Swiss-Prot
Superfamily-SCOP SSF46785 UniProtKB/Swiss-Prot
UniProt FOXP2_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-02-28 Foxp2  forkhead box P2  RGD1559697_predicted  similar to forkhead/winged-helix transcription factor 2 (predicted)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-03-07 RGD1559697_predicted  similar to forkhead/winged-helix transcription factor 2 (predicted)  LOC500037  similar to forkhead/winged-helix transcription factor 2  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC500037  similar to forkhead/winged-helix transcription factor 2      Symbol and Name status set to provisional 70820 PROVISIONAL