Foxp2 (forkhead box P2) - Rat Genome Database

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Gene: Foxp2 (forkhead box P2) Rattus norvegicus
Analyze
Symbol: Foxp2
Name: forkhead box P2
RGD ID: 1559697
Description: Enables nuclear androgen receptor binding activity. Involved in forebrain development; innate vocalization behavior; and response to testosterone. Predicted to be active in nucleus. Human ortholog(s) of this gene implicated in several diseases, including attention deficit hyperactivity disorder; autism spectrum disorder (multiple); communication disorder (multiple); dyslexia; and major depressive disorder. Orthologous to human FOXP2 (forkhead box P2); INTERACTS WITH 1,3-dinitrobenzene; 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: Forkhead box protein P2; LOC500037; RGD1559697; similar to forkhead/winged-helix transcription factor 2
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8444,099,848 - 44,677,700 (+)NCBIGRCr8
mRatBN7.2443,133,827 - 43,712,442 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl443,133,912 - 43,711,683 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx448,130,294 - 48,709,908 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0444,051,310 - 44,630,784 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0442,459,948 - 43,039,553 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0441,364,441 - 41,944,685 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl441,364,441 - 41,942,023 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0440,956,160 - 41,530,231 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4440,719,812 - 40,977,517 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera438,465,580 - 39,042,946 (+)NCBICelera
Cytogenetic Map4q22NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2-dichloroethane  (ISO)
1,2-dimethylhydrazine  (ISO)
1,3-dinitrobenzene  (EXP)
2,2',4,4',5,5'-hexachlorobiphenyl  (ISO)
2,2',5,5'-tetrachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3,7,8-Tetrachlorodibenzofuran  (EXP)
3,3',4,4'-tetrachlorobiphenyl  (ISO)
4,4'-sulfonyldiphenol  (ISO)
aflatoxin B1  (EXP,ISO)
all-trans-retinoic acid  (ISO)
antirheumatic drug  (ISO)
aristolochic acid A  (ISO)
arsenite(3-)  (ISO)
avobenzone  (ISO)
benzo[a]pyrene  (EXP,ISO)
benzo[a]pyrene diol epoxide I  (ISO)
benzo[e]pyrene  (ISO)
bis(2-ethylhexyl) phthalate  (EXP,ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
carbamazepine  (ISO)
casticin  (ISO)
chlordecone  (ISO)
choline  (ISO)
clozapine  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
coumarin  (ISO)
coumestrol  (ISO)
crocin-1  (ISO)
Cuprizon  (EXP)
cyclosporin A  (ISO)
DDT  (EXP)
diazinon  (EXP)
dichloroacetic acid  (ISO)
dorsomorphin  (ISO)
Enterolactone  (ISO)
epoxiconazole  (ISO)
folic acid  (ISO)
formaldehyde  (ISO)
fulvestrant  (ISO)
genistein  (ISO)
hydralazine  (ISO)
ketoconazole  (EXP)
L-methionine  (ISO)
lead diacetate  (ISO)
manganese atom  (ISO)
manganese(0)  (ISO)
manganese(II) chloride  (ISO)
melphalan  (ISO)
methapyrilene  (ISO)
methyl methanesulfonate  (ISO)
N-methyl-4-phenylpyridinium  (ISO)
nickel atom  (ISO)
ozone  (ISO)
paracetamol  (EXP)
paraquat  (EXP)
PCB138  (ISO)
phencyclidine  (ISO)
phenobarbital  (ISO)
phenylmercury acetate  (ISO)
pirinixic acid  (ISO)
rotenone  (ISO)
SB 431542  (ISO)
silicon dioxide  (ISO)
silver atom  (ISO)
silver(0)  (ISO)
sodium arsenite  (ISO)
Stanolone benzoate  (EXP)
thimerosal  (ISO)
triphenyl phosphate  (EXP)
triptonide  (ISO)
tris(2-butoxyethyl) phosphate  (ISO)
valproic acid  (ISO)
vorinostat  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
nucleus  (IBA,IEA,ISO)

References

References - curated
# Reference Title Reference Citation
1. Androgen modulation of Foxp1 and Foxp2 in the developing rat brain: impact on sex specific vocalization. Bowers JM, etal., Endocrinology. 2014 Dec;155(12):4881-94. doi: 10.1210/en.2014-1486. Epub 2014 Sep 23.
2. Foxp2 mediates sex differences in ultrasonic vocalization by rat pups and directs order of maternal retrieval. Bowers JM, etal., J Neurosci. 2013 Feb 20;33(8):3276-83. doi: 10.1523/JNEUROSCI.0425-12.2013.
3. Maternal infection leads to abnormal gene regulation and brain atrophy in mouse offspring: implications for genesis of neurodevelopmental disorders. Fatemi SH, etal., Schizophr Res. 2008 Feb;99(1-3):56-70. doi: 10.1016/j.schres.2007.11.018. Epub 2008 Jan 9.
4. Absence of a paternally inherited FOXP2 gene in developmental verbal dyspraxia. Feuk L, etal., Am J Hum Genet. 2006 Nov;79(5):965-72. Epub 2006 Sep 27.
5. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
6. Mutation screening of FOXP2 in individuals diagnosed with autistic disorder. Gauthier J, etal., Am J Med Genet A. 2003 Apr 15;118A(2):172-5.
7. Association between the FOXP2 gene and autistic disorder in Chinese population. Gong X, etal., Am J Med Genet B Neuropsychiatr Genet. 2004 May 15;127B(1):113-6.
8. A forkhead-domain gene is mutated in a severe speech and language disorder. Lai CS, etal., Nature. 2001 Oct 4;413(6855):519-23.
9. Absence of causative mutations and presence of autism-related allele in FOXP2 in Japanese autistic patients. Li H, etal., Brain Dev. 2005 Apr;27(3):207-10.
10. FoxP2 is significantly associated with schizophrenia and major depression in the Chinese Han population. Li T, etal., World J Biol Psychiatry. 2013 Mar;14(2):146-50. doi: 10.3109/15622975.2011.615860. Epub 2012 Mar 9.
11. Identification of FOXP2 truncation as a novel cause of developmental speech and language deficits. MacDermot KD, etal., Am J Hum Genet. 2005 Jun;76(6):1074-80. Epub 2005 Apr 22.
12. No association of FOXP2 and PTPRZ1 on 7q31 with autism from the Japanese population. Marui T, etal., Neurosci Res. 2005 Sep;53(1):91-4.
13. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
14. Interaction between MAOA and FOXP2 in association with autism and verbal communication in a Korean population. Park Y, etal., J Child Neurol. 2014 Dec;29(12):NP207-11. doi: 10.1177/0883073813511301. Epub 2013 Dec 18.
15. GOA pipeline RGD automated data pipeline
16. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
17. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
18. Comprehensive gene review and curation RGD comprehensive gene curation
19. An association study of sequence variants in the forkhead box P2 (FOXP2) gene and adulthood attention-deficit/hyperactivity disorder in two European samples. Ribases M, etal., Psychiatr Genet. 2012 Aug;22(4):155-60. doi: 10.1097/YPG.0b013e328353957e.
20. Association between FOXP2 polymorphisms and schizophrenia with auditory hallucinations. Sanjuan J, etal., Psychiatr Genet. 2006 Apr;16(2):67-72.
21. Expression of Foxp2, a gene involved in speech and language, in the developing and adult striatum. Takahashi K, etal., J Neurosci Res. 2003 Jul 1;73(1):61-72.
22. FOXP2 gene and language impairment in schizophrenia: association and epigenetic studies. Tolosa A, etal., BMC Med Genet. 2010 Jul 22;11:114. doi: 10.1186/1471-2350-11-114.
23. Assessing the impact of FOXP1 mutations on developmental verbal dyspraxia. Vernes SC, etal., Eur J Hum Genet. 2009 Oct;17(10):1354-8. doi: 10.1038/ejhg.2009.43. Epub 2009 Apr 8.
24. Functional genetic analysis of mutations implicated in a human speech and language disorder. Vernes SC, etal., Hum Mol Genet. 2006 Nov 1;15(21):3154-67. Epub 2006 Sep 19.
25. Evaluation of FOXP2 as an autism susceptibility gene. Wassink TH, etal., Am J Med Genet. 2002 Jul 8;114(5):566-9.
26. Imaging genetics of FOXP2 in dyslexia. Wilcke A, etal., Eur J Hum Genet. 2012 Feb;20(2):224-9. doi: 10.1038/ejhg.2011.160. Epub 2011 Sep 7.
27. Association between FOXP2 gene and speech sound disorder in Chinese population. Zhao Y, etal., Psychiatry Clin Neurosci. 2010 Oct;64(5):565-73. doi: 10.1111/j.1440-1819.2010.02123.x.
Additional References at PubMed
PMID:11358962   PMID:11872605   PMID:14701752   PMID:15057822   PMID:15983371   PMID:16407075   PMID:17428829   PMID:17619227   PMID:18239190   PMID:18987363   PMID:19319003   PMID:21108936  
PMID:24893771   PMID:25609649   PMID:29414420   PMID:31545395   PMID:31887421   PMID:36722214   PMID:36766852  


Genomics

Comparative Map Data
Foxp2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8444,099,848 - 44,677,700 (+)NCBIGRCr8
mRatBN7.2443,133,827 - 43,712,442 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl443,133,912 - 43,711,683 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx448,130,294 - 48,709,908 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0444,051,310 - 44,630,784 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0442,459,948 - 43,039,553 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0441,364,441 - 41,944,685 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl441,364,441 - 41,942,023 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0440,956,160 - 41,530,231 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4440,719,812 - 40,977,517 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera438,465,580 - 39,042,946 (+)NCBICelera
Cytogenetic Map4q22NCBI
FOXP2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh387114,086,327 - 114,693,765 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl7114,086,327 - 114,693,772 (+)EnsemblGRCh38hg38GRCh38
GRCh377113,726,382 - 114,333,820 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 367113,842,288 - 114,118,328 (+)NCBINCBI36Build 36hg18NCBI36
Build 347113,649,226 - 113,924,106NCBI
Celera7108,532,810 - 109,140,335 (+)NCBICelera
Cytogenetic Map7q31.1NCBI
HuRef7108,089,788 - 108,698,059 (+)NCBIHuRef
CHM1_17113,659,668 - 114,267,158 (+)NCBICHM1_1
T2T-CHM13v2.07115,401,144 - 116,008,457 (+)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v27113,121,523 - 113,729,058 (+)NCBI
Foxp2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39614,901,348 - 15,441,976 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl614,901,348 - 15,441,976 (+)EnsemblGRCm39 Ensembl
GRCm38614,901,349 - 15,441,977 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl614,901,349 - 15,441,977 (+)EnsemblGRCm38mm10GRCm38
MGSCv37614,851,349 - 15,391,977 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36614,851,390 - 15,391,977 (+)NCBIMGSCv36mm8
Celera614,991,559 - 15,532,353 (+)NCBICelera
Cytogenetic Map6A1NCBI
cM Map66.49NCBI
Foxp2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543220,334,237 - 20,589,352 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495543220,205,369 - 20,589,608 (+)NCBIChiLan1.0ChiLan1.0
FOXP2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v26150,898,100 - 151,506,327 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan172,908,395 - 3,516,582 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v07106,040,118 - 106,648,741 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.17119,077,322 - 119,346,956 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl7119,077,332 - 119,343,893 (+)Ensemblpanpan1.1panPan2
FOXP2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11453,311,214 - 53,864,056 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1453,312,045 - 53,862,655 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1452,705,645 - 53,260,684 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01453,348,680 - 53,904,109 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1453,348,391 - 53,900,525 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11453,380,738 - 53,934,984 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01453,066,607 - 53,621,520 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01453,439,813 - 53,995,147 (+)NCBIUU_Cfam_GSD_1.0
Foxp2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440511842,028,555 - 42,570,609 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365894,123,182 - 4,382,005 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365894,120,162 - 4,661,258 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FOXP2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1831,335,264 - 31,888,845 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11831,335,102 - 31,890,523 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21833,665,884 - 33,729,395 (-)NCBISscrofa10.2Sscrofa10.2susScr3
FOXP2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12182,799,147 - 83,392,568 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2183,129,308 - 83,389,483 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604220,372,419 - 20,967,513 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Foxp2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248274,817,092 - 5,086,488 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248274,813,203 - 5,086,326 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Foxp2
2359 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:176
Count of miRNA genes:120
Interacting mature miRNAs:138
Transcripts:ENSRNOT00000007759, ENSRNOT00000034028
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2302371Stl22Serum triglyceride level QTL 225.15blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)4521829457114705Rat
2303585Bw86Body weight QTL 864body mass (VT:0001259)body weight (CMO:0000012)41467806559678065Rat
1358352Srcrt3Stress Responsive Cort QTL 32.29blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)438465774146803430Rat
61445Strs3Sensitivity to stroke QTL 33cerebrum integrity trait (VT:0010549)post-insult time to onset of cerebrovascular lesion (CMO:0002343)44043338885433388Rat
6893678Bw108Body weight QTL 1082.60.006body mass (VT:0001259)body weight (CMO:0000012)44345797688457976Rat
8552906Pigfal3Plasma insulin-like growth factor 1 level QTL 3blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)41008408955084089Rat
8655949Rf62Renal function QTL 6222blood urea nitrogen amount (VT:0005265)plasma urea nitrogen level (CMO:0000586)43443011944463908Rat
1331807Rf31Renal function QTL 312.988urine potassium amount (VT:0010539)urine potassium level (CMO:0000128)43952426474726312Rat
6478766Anxrr47Anxiety related response QTL 470.09637locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)41008408955084089Rat
8552782Vie1Viral induced encephalitis QTL 126.4brain integrity trait (VT:0010579)encephalitis incidence/prevalence measurement (CMO:0002361)43443048482490359Rat
631642Stl2Serum triglyceride level QTL 23.3blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)4521917856647776Rat
6478769Anxrr48Anxiety related response QTL 480.02514locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)41008408955084089Rat
631261Tcas3Tongue tumor susceptibility QTL 36.88tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)41081417091360527Rat
634323Hc2Hypercalciuria QTL 22.15urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)421079645210796Rat
2313401Anxrr27Anxiety related response QTL 27aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)41793350862933508Rat
8655961Kidm43Kidney mass QTL 4318kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)436303261103194984Rat
631209Bw2Body weight QTL24.2retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)4994088544463908Rat
6909128Pancm4Pancreatic morphology QTL 411.35pancreas mass (VT:0010144)pancreas wet weight (CMO:0000626)42690728575585128Rat
8694374Bw155Body weight QTL 1553.390.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)41008408955084089Rat
2303168Bp330Blood pressure QTL 3304.250.017arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)45214602146446691Rat
8552801Bw143Body weight QTL 1437.3body mass (VT:0001259)change in body weight to body weight ratio (CMO:0002216)43443048482490359Rat
61475Aia2Adjuvant induced arthritis QTL 25.8joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)43950527573892441Rat
8694439Bw168Body weight QTL 1689.570.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)44043341485433414Rat
61412Pia2Pristane induced arthritis QTL 23.9joint integrity trait (VT:0010548)post-insult time to onset of experimental arthritis (CMO:0001450)42133334362278020Rat
2290374Gluco32Glucose level QTL 326.27blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)43717795044463908Rat
6478724Anxrr35Anxiety related response QTL 350.00449defecation behavior trait (VT:0010462)defecation measurement (CMO:0000997)41008408955084089Rat
8655906Rf60Renal function QTL 603.8blood creatinine amount (VT:0005328)creatinine clearance (CMO:0000765)42949419581006281Rat
619616Bp79Blood pressure QTL 790.0292arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)4521460278882945Rat
6909122Insul22Insulin level QTL 224.63blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)42690728575585128Rat
8552809Vie5Viral induced encephalitis QTL 525.3brain integrity trait (VT:0010579)encephalitis incidence/prevalence measurement (CMO:0002361)43443048482490359Rat
1358203Stl19Serum triglyceride level QTL 192.80.002blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)4521829465958103Rat
9590304Scort17Serum corticosterone level QTL 174.960.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)41008408955084089Rat
1300139Hrtrt6Heart rate QTL 62.85heart pumping trait (VT:2000009)heart rate (CMO:0000002)439524264116179656Rat
12798520Anxrr55Anxiety related response QTL 554.450.01locomotor behavior trait (VT:0001392)number of rearing movements with lid-pushing in an experimental apparatus (CMO:0002715)432583980114627242Rat
11530004Niddm71Non-insulin dependent diabetes mellitus QTL 710.001blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)43258419952754138Rat
2316958Gluco58Glucose level QTL 5810blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)411320076180699135Rat
1354665Stl10Serum triglyceride level QTL 103.57blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)42133334344463908Rat

Markers in Region
BE110309  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2443,710,692 - 43,710,875 (+)MAPPERmRatBN7.2
Rnor_6.0441,941,033 - 41,941,215NCBIRnor6.0
Rnor_5.0441,528,484 - 41,528,666UniSTSRnor5.0
RGSC_v3.4440,980,051 - 40,980,233UniSTSRGSC3.4
Celera439,041,956 - 39,042,138UniSTS
RH 3.4 Map4276.6UniSTS
Cytogenetic Map4q21UniSTS
BF402867  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2443,599,366 - 43,599,506 (+)MAPPERmRatBN7.2
Rnor_6.0441,829,714 - 41,829,853NCBIRnor6.0
Rnor_5.0441,416,857 - 41,416,996UniSTSRnor5.0
RGSC_v3.4440,868,732 - 40,868,871UniSTSRGSC3.4
Celera438,930,528 - 38,930,667UniSTS
RH 3.4 Map4279.1UniSTS
Cytogenetic Map4q21UniSTS
AU048259  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2443,428,077 - 43,428,279 (+)MAPPERmRatBN7.2
Rnor_6.0441,658,435 - 41,658,636NCBIRnor6.0
Rnor_5.0441,245,446 - 41,245,647UniSTSRnor5.0
RGSC_v3.4440,697,453 - 40,697,654UniSTSRGSC3.4
Celera438,759,521 - 38,759,722UniSTS
Cytogenetic Map4q21UniSTS
stSG611484  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2443,667,563 - 43,668,821 (+)MAPPERmRatBN7.2
Rnor_6.0441,897,910 - 41,899,167NCBIRnor6.0
Rnor_5.0441,485,211 - 41,486,468UniSTSRnor5.0
RGSC_v3.4440,936,928 - 40,938,185UniSTSRGSC3.4
Celera438,998,862 - 39,000,119UniSTS
Cytogenetic Map4q21UniSTS
stSG611494  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2443,679,044 - 43,680,142 (+)MAPPERmRatBN7.2
Rnor_6.0441,909,385 - 41,910,482NCBIRnor6.0
Rnor_5.0441,496,686 - 41,497,783UniSTSRnor5.0
RGSC_v3.4440,948,403 - 40,949,500UniSTSRGSC3.4
Celera439,010,333 - 39,011,429UniSTS
Cytogenetic Map4q21UniSTS
stSG611518  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2443,705,220 - 43,705,464 (+)MAPPERmRatBN7.2
Rnor_6.0441,935,561 - 41,935,804NCBIRnor6.0
Rnor_5.0441,523,012 - 41,523,255UniSTSRnor5.0
RGSC_v3.4440,974,579 - 40,974,822UniSTSRGSC3.4
Celera439,036,483 - 39,036,726UniSTS
Cytogenetic Map4q21UniSTS
stSG611519  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2443,705,469 - 43,706,706 (+)MAPPERmRatBN7.2
Rnor_6.0441,935,810 - 41,937,046NCBIRnor6.0
Rnor_5.0441,523,261 - 41,524,497UniSTSRnor5.0
RGSC_v3.4440,974,828 - 40,976,064UniSTSRGSC3.4
Celera439,036,732 - 39,037,968UniSTS
Cytogenetic Map4q21UniSTS
stSG611520  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2443,706,686 - 43,708,122 (+)MAPPERmRatBN7.2
Rnor_6.0441,937,027 - 41,938,462NCBIRnor6.0
Rnor_5.0441,524,478 - 41,525,913UniSTSRnor5.0
RGSC_v3.4440,976,045 - 40,977,480UniSTSRGSC3.4
Celera439,037,949 - 39,039,384UniSTS
Cytogenetic Map4q21UniSTS
MARC_13931-13932:1007579490:1  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2443,710,204 - 43,710,694 (+)MAPPERmRatBN7.2
Rnor_6.0441,940,545 - 41,941,034NCBIRnor6.0
Rnor_5.0441,527,996 - 41,528,485UniSTSRnor5.0
RGSC_v3.4440,979,563 - 40,980,052UniSTSRGSC3.4
Celera439,041,468 - 39,041,957UniSTS
Cytogenetic Map4q21UniSTS
ECD00202  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2443,678,037 - 43,678,983 (+)MAPPERmRatBN7.2
Rnor_6.0441,908,378 - 41,909,323NCBIRnor6.0
Rnor_5.0441,495,679 - 41,496,624UniSTSRnor5.0
RGSC_v3.4440,947,396 - 40,948,341UniSTSRGSC3.4
Celera439,009,326 - 39,010,271UniSTS
Cytogenetic Map4q21UniSTS
ECD00361  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2443,680,012 - 43,680,924 (+)MAPPERmRatBN7.2
Rnor_6.0441,910,353 - 41,911,264NCBIRnor6.0
Rnor_5.0441,497,654 - 41,498,565UniSTSRnor5.0
RGSC_v3.4440,949,371 - 40,950,282UniSTSRGSC3.4
Celera439,011,301 - 39,012,211UniSTS
Cytogenetic Map4q21UniSTS
ECD01298  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2443,679,030 - 43,679,914 (+)MAPPERmRatBN7.2
Rnor_6.0441,909,371 - 41,910,254NCBIRnor6.0
Rnor_5.0441,496,672 - 41,497,555UniSTSRnor5.0
RGSC_v3.4440,948,389 - 40,949,272UniSTSRGSC3.4
Celera439,010,319 - 39,011,202UniSTS
Cytogenetic Map4q21UniSTS
ECD02857  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2443,708,047 - 43,708,898 (+)MAPPERmRatBN7.2
Rnor_6.0441,938,388 - 41,939,238NCBIRnor6.0
Rnor_5.0441,525,839 - 41,526,689UniSTSRnor5.0
RGSC_v3.4440,977,406 - 40,978,256UniSTSRGSC3.4
Celera439,039,310 - 39,040,160UniSTS
Cytogenetic Map4q21UniSTS
ECD03612  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2443,450,369 - 43,451,172 (+)MAPPERmRatBN7.2
Rnor_6.0441,680,720 - 41,681,522NCBIRnor6.0
Rnor_5.0441,267,842 - 41,268,644UniSTSRnor5.0
RGSC_v3.4440,719,738 - 40,720,540UniSTSRGSC3.4
Celera438,781,887 - 38,782,689UniSTS
Cytogenetic Map4q21UniSTS
REN101860  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2443,390,516 - 43,390,764 (+)MAPPERmRatBN7.2
Rnor_6.0441,621,001 - 41,621,248NCBIRnor6.0
Rnor_5.0441,207,901 - 41,208,148UniSTSRnor5.0
RGSC_v3.4440,660,019 - 40,660,266UniSTSRGSC3.4
Celera438,722,024 - 38,722,271UniSTS
Cytogenetic Map4q21UniSTS
REN101856  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2443,389,683 - 43,389,951 (+)MAPPERmRatBN7.2
Rnor_6.0441,620,168 - 41,620,435NCBIRnor6.0
Rnor_5.0441,207,068 - 41,207,335UniSTSRnor5.0
RGSC_v3.4440,659,186 - 40,659,453UniSTSRGSC3.4
Celera438,721,191 - 38,721,458UniSTS
Cytogenetic Map4q21UniSTS
REN102194  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2443,448,006 - 43,448,231 (+)MAPPERmRatBN7.2
Rnor_6.0441,678,357 - 41,678,581NCBIRnor6.0
Rnor_5.0441,265,462 - 41,265,686UniSTSRnor5.0
RGSC_v3.4440,717,375 - 40,717,599UniSTSRGSC3.4
Celera438,779,602 - 38,779,826UniSTS
Cytogenetic Map4q21UniSTS
REN102201  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2443,449,596 - 43,449,858 (+)MAPPERmRatBN7.2
Rnor_6.0441,679,947 - 41,680,208NCBIRnor6.0
Rnor_5.0441,267,052 - 41,267,313UniSTSRnor5.0
RGSC_v3.4440,718,965 - 40,719,226UniSTSRGSC3.4
Celera438,781,192 - 38,781,453UniSTS
Cytogenetic Map4q21UniSTS
REN102202  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2443,449,834 - 43,450,085 (+)MAPPERmRatBN7.2
Rnor_6.0441,680,185 - 41,680,435NCBIRnor6.0
Rnor_5.0441,267,290 - 41,267,540UniSTSRnor5.0
RGSC_v3.4440,719,203 - 40,719,453UniSTSRGSC3.4
Celera438,781,430 - 38,781,680UniSTS
Cytogenetic Map4q21UniSTS
REN102203  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2443,450,057 - 43,450,379 (+)MAPPERmRatBN7.2
Rnor_6.0441,680,408 - 41,680,729NCBIRnor6.0
Rnor_5.0441,267,513 - 41,267,851UniSTSRnor5.0
RGSC_v3.4440,719,426 - 40,719,747UniSTSRGSC3.4
Celera438,781,653 - 38,781,896UniSTS
Cytogenetic Map4q21UniSTS
REN102204  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2443,450,373 - 43,450,622 (+)MAPPERmRatBN7.2
Rnor_6.0441,680,724 - 41,680,972NCBIRnor6.0
Rnor_5.0441,267,846 - 41,268,094UniSTSRnor5.0
RGSC_v3.4440,719,742 - 40,719,990UniSTSRGSC3.4
Celera438,781,891 - 38,782,139UniSTS
Cytogenetic Map4q21UniSTS
REN102208  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2443,451,279 - 43,451,582 (+)MAPPERmRatBN7.2
Rnor_6.0441,681,630 - 41,681,932NCBIRnor6.0
Rnor_5.0441,268,752 - 41,269,054UniSTSRnor5.0
RGSC_v3.4440,720,648 - 40,720,950UniSTSRGSC3.4
Celera438,782,797 - 38,783,099UniSTS
Cytogenetic Map4q21UniSTS
REN102214  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2443,452,712 - 43,452,976 (+)MAPPERmRatBN7.2
Rnor_6.0441,683,063 - 41,683,326NCBIRnor6.0
Rnor_5.0441,270,185 - 41,270,448UniSTSRnor5.0
RGSC_v3.4440,722,081 - 40,722,344UniSTSRGSC3.4
Celera438,784,230 - 38,784,493UniSTS
Cytogenetic Map4q21UniSTS
REN102213  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2443,452,479 - 43,452,735 (+)MAPPERmRatBN7.2
Rnor_6.0441,682,830 - 41,683,085NCBIRnor6.0
Rnor_5.0441,269,952 - 41,270,207UniSTSRnor5.0
RGSC_v3.4440,721,848 - 40,722,103UniSTSRGSC3.4
Celera438,783,997 - 38,784,252UniSTS
Cytogenetic Map4q21UniSTS
REN102215  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2443,452,958 - 43,453,200 (+)MAPPERmRatBN7.2
Rnor_6.0441,683,309 - 41,683,550NCBIRnor6.0
Rnor_5.0441,270,431 - 41,270,672UniSTSRnor5.0
RGSC_v3.4440,722,327 - 40,722,568UniSTSRGSC3.4
Celera438,784,476 - 38,784,717UniSTS
Cytogenetic Map4q21UniSTS
REN102218  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2443,453,590 - 43,453,848 (+)MAPPERmRatBN7.2
Rnor_6.0441,683,941 - 41,684,198NCBIRnor6.0
Rnor_5.0441,271,063 - 41,271,320UniSTSRnor5.0
RGSC_v3.4440,722,959 - 40,723,216UniSTSRGSC3.4
Celera438,785,108 - 38,785,365UniSTS
Cytogenetic Map4q21UniSTS
REN102219  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2443,453,829 - 43,454,073 (+)MAPPERmRatBN7.2
Rnor_6.0441,684,180 - 41,684,423NCBIRnor6.0
Rnor_5.0441,271,302 - 41,271,545UniSTSRnor5.0
RGSC_v3.4440,723,198 - 40,723,441UniSTSRGSC3.4
Celera438,785,347 - 38,785,590UniSTS
Cytogenetic Map4q21UniSTS
REN102239  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2443,458,320 - 43,458,582 (+)MAPPERmRatBN7.2
Rnor_6.0441,688,667 - 41,688,928NCBIRnor6.0
Rnor_5.0441,275,789 - 41,276,050UniSTSRnor5.0
RGSC_v3.4440,727,685 - 40,727,946UniSTSRGSC3.4
Celera438,789,840 - 38,790,101UniSTS
Cytogenetic Map4q21UniSTS
REN102256  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2443,461,921 - 43,462,171 (+)MAPPERmRatBN7.2
Rnor_6.0441,692,267 - 41,692,516NCBIRnor6.0
Rnor_5.0441,279,389 - 41,279,638UniSTSRnor5.0
RGSC_v3.4440,731,285 - 40,731,534UniSTSRGSC3.4
Celera438,793,440 - 38,793,689UniSTS
Cytogenetic Map4q21UniSTS
REN102277  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2443,466,714 - 43,466,943 (+)MAPPERmRatBN7.2
Rnor_6.0441,697,060 - 41,697,288NCBIRnor6.0
Rnor_5.0441,284,182 - 41,284,410UniSTSRnor5.0
RGSC_v3.4440,736,078 - 40,736,306UniSTSRGSC3.4
Celera438,798,233 - 38,798,461UniSTS
Cytogenetic Map4q21UniSTS
REN102278  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2443,466,919 - 43,467,155 (+)MAPPERmRatBN7.2
Rnor_6.0441,697,265 - 41,697,500NCBIRnor6.0
Rnor_5.0441,284,387 - 41,284,622UniSTSRnor5.0
RGSC_v3.4440,736,283 - 40,736,518UniSTSRGSC3.4
Celera438,798,438 - 38,798,673UniSTS
Cytogenetic Map4q21UniSTS
REN102585  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2443,524,847 - 43,525,098 (+)MAPPERmRatBN7.2
Rnor_6.0441,755,195 - 41,755,445NCBIRnor6.0
Rnor_5.0441,342,317 - 41,342,567UniSTSRnor5.0
RGSC_v3.4440,794,213 - 40,794,463UniSTSRGSC3.4
Celera438,856,223 - 38,856,473UniSTS
Cytogenetic Map4q21UniSTS
REN102875  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2443,588,483 - 43,588,734 (+)MAPPERmRatBN7.2
Rnor_6.0441,818,827 - 41,819,077NCBIRnor6.0
Rnor_5.0441,405,970 - 41,406,220UniSTSRnor5.0
RGSC_v3.4440,857,845 - 40,858,095UniSTSRGSC3.4
Celera438,919,653 - 38,919,903UniSTS
Cytogenetic Map4q21UniSTS
REN103118  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2443,638,205 - 43,638,447 (+)MAPPERmRatBN7.2
Rnor_6.0441,868,552 - 41,868,793NCBIRnor6.0
Rnor_5.0441,455,853 - 41,456,094UniSTSRnor5.0
RGSC_v3.4440,907,570 - 40,907,811UniSTSRGSC3.4
Celera438,969,367 - 38,969,608UniSTS
Cytogenetic Map4q21UniSTS
REN103156  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2443,646,210 - 43,646,454 (+)MAPPERmRatBN7.2
Rnor_6.0441,876,557 - 41,876,800NCBIRnor6.0
Rnor_5.0441,463,858 - 41,464,101UniSTSRnor5.0
RGSC_v3.4440,915,575 - 40,915,818UniSTSRGSC3.4
Celera438,977,506 - 38,977,749UniSTS
Cytogenetic Map4q21UniSTS
REN103238  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2443,668,168 - 43,668,415 (+)MAPPERmRatBN7.2
Rnor_6.0441,898,515 - 41,898,761NCBIRnor6.0
Rnor_5.0441,485,816 - 41,486,062UniSTSRnor5.0
RGSC_v3.4440,937,533 - 40,937,779UniSTSRGSC3.4
Celera438,999,467 - 38,999,713UniSTS
Cytogenetic Map4q21UniSTS
REN103240  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2443,668,621 - 43,668,870 (+)MAPPERmRatBN7.2
Rnor_6.0441,898,968 - 41,899,216NCBIRnor6.0
Rnor_5.0441,486,269 - 41,486,517UniSTSRnor5.0
RGSC_v3.4440,937,986 - 40,938,234UniSTSRGSC3.4
Celera438,999,920 - 39,000,168UniSTS
Cytogenetic Map4q21UniSTS
REN103266  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2443,674,492 - 43,674,747 (+)MAPPERmRatBN7.2
Rnor_6.0441,904,833 - 41,905,087NCBIRnor6.0
Rnor_5.0441,492,134 - 41,492,388UniSTSRnor5.0
RGSC_v3.4440,943,851 - 40,944,105UniSTSRGSC3.4
Celera439,005,781 - 39,006,035UniSTS
Cytogenetic Map4q21UniSTS
REN103265  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2443,674,255 - 43,674,496 (+)MAPPERmRatBN7.2
Rnor_6.0441,904,596 - 41,904,836NCBIRnor6.0
Rnor_5.0441,491,897 - 41,492,137UniSTSRnor5.0
RGSC_v3.4440,943,614 - 40,943,854UniSTSRGSC3.4
Celera439,005,544 - 39,005,784UniSTS
Cytogenetic Map4q21UniSTS
REN103256  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2443,672,322 - 43,672,573 (+)MAPPERmRatBN7.2
Rnor_6.0441,902,663 - 41,902,913NCBIRnor6.0
Rnor_5.0441,489,964 - 41,490,214UniSTSRnor5.0
RGSC_v3.4440,941,681 - 40,941,931UniSTSRGSC3.4
Celera439,003,611 - 39,003,861UniSTS
Cytogenetic Map4q21UniSTS
REN103285  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2443,678,963 - 43,679,209 (+)MAPPERmRatBN7.2
Rnor_6.0441,909,304 - 41,909,549NCBIRnor6.0
Rnor_5.0441,496,605 - 41,496,850UniSTSRnor5.0
RGSC_v3.4440,948,322 - 40,948,567UniSTSRGSC3.4
Celera439,010,252 - 39,010,497UniSTS
Cytogenetic Map4q21UniSTS
REN103286  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2443,679,177 - 43,679,428 (+)MAPPERmRatBN7.2
Rnor_6.0441,909,518 - 41,909,768NCBIRnor6.0
Rnor_5.0441,496,819 - 41,497,069UniSTSRnor5.0
RGSC_v3.4440,948,536 - 40,948,786UniSTSRGSC3.4
Celera439,010,466 - 39,010,716UniSTS
Cytogenetic Map4q21UniSTS
REN103413  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2443,706,372 - 43,706,606 (+)MAPPERmRatBN7.2
Rnor_6.0441,936,713 - 41,936,946NCBIRnor6.0
Rnor_5.0441,524,164 - 41,524,397UniSTSRnor5.0
RGSC_v3.4440,975,731 - 40,975,964UniSTSRGSC3.4
Celera439,037,635 - 39,037,868UniSTS
Cytogenetic Map4q21UniSTS
REN103414  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2443,706,553 - 43,706,799 (+)MAPPERmRatBN7.2
Rnor_6.0441,936,894 - 41,937,139NCBIRnor6.0
Rnor_5.0441,524,345 - 41,524,590UniSTSRnor5.0
RGSC_v3.4440,975,912 - 40,976,157UniSTSRGSC3.4
Celera439,037,816 - 39,038,061UniSTS
Cytogenetic Map4q21UniSTS
REN103408  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2443,705,234 - 43,705,486 (+)MAPPERmRatBN7.2
Rnor_6.0441,935,575 - 41,935,826NCBIRnor6.0
Rnor_5.0441,523,026 - 41,523,277UniSTSRnor5.0
RGSC_v3.4440,974,593 - 40,974,844UniSTSRGSC3.4
Celera439,036,497 - 39,036,748UniSTS
Cytogenetic Map4q21UniSTS
REN103423  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2443,708,415 - 43,708,665 (+)MAPPERmRatBN7.2
Rnor_6.0441,938,756 - 41,939,005NCBIRnor6.0
Rnor_5.0441,526,207 - 41,526,456UniSTSRnor5.0
RGSC_v3.4440,977,774 - 40,978,023UniSTSRGSC3.4
Celera439,039,678 - 39,039,927UniSTS
Cytogenetic Map4q21UniSTS
REN103422  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2443,708,152 - 43,708,418 (+)MAPPERmRatBN7.2
Rnor_6.0441,938,493 - 41,938,758NCBIRnor6.0
Rnor_5.0441,525,944 - 41,526,209UniSTSRnor5.0
RGSC_v3.4440,977,511 - 40,977,776UniSTSRGSC3.4
Celera439,039,415 - 39,039,680UniSTS
Cytogenetic Map4q21UniSTS
REN103425  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2443,708,874 - 43,709,094 (+)MAPPERmRatBN7.2
Rnor_6.0441,939,215 - 41,939,434NCBIRnor6.0
Rnor_5.0441,526,666 - 41,526,885UniSTSRnor5.0
RGSC_v3.4440,978,233 - 40,978,452UniSTSRGSC3.4
Celera439,040,137 - 39,040,356UniSTS
Cytogenetic Map4q21UniSTS
REN103424  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2443,708,638 - 43,708,898 (+)MAPPERmRatBN7.2
Rnor_6.0441,938,979 - 41,939,238NCBIRnor6.0
Rnor_5.0441,526,430 - 41,526,689UniSTSRnor5.0
RGSC_v3.4440,977,997 - 40,978,256UniSTSRGSC3.4
Celera439,039,901 - 39,040,160UniSTS
Cytogenetic Map4q21UniSTS
REN103428  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2443,709,520 - 43,709,773 (+)MAPPERmRatBN7.2
Rnor_6.0441,939,861 - 41,940,113NCBIRnor6.0
Rnor_5.0441,527,312 - 41,527,564UniSTSRnor5.0
RGSC_v3.4440,978,879 - 40,979,131UniSTSRGSC3.4
Celera439,040,783 - 39,041,035UniSTS
Cytogenetic Map4q21UniSTS
REN103427  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2443,709,292 - 43,709,545 (+)MAPPERmRatBN7.2
Rnor_6.0441,939,633 - 41,939,885NCBIRnor6.0
Rnor_5.0441,527,084 - 41,527,336UniSTSRnor5.0
RGSC_v3.4440,978,651 - 40,978,903UniSTSRGSC3.4
Celera439,040,555 - 39,040,807UniSTS
Cytogenetic Map4q21UniSTS
REN103431  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2443,710,290 - 43,710,539 (+)MAPPERmRatBN7.2
Rnor_6.0441,940,631 - 41,940,879NCBIRnor6.0
Rnor_5.0441,528,082 - 41,528,330UniSTSRnor5.0
RGSC_v3.4440,979,649 - 40,979,897UniSTSRGSC3.4
Celera439,041,554 - 39,041,802UniSTS
Cytogenetic Map4q21UniSTS
REN103433  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2443,710,688 - 43,710,936 (+)MAPPERmRatBN7.2
Rnor_6.0441,941,029 - 41,941,276NCBIRnor6.0
Rnor_5.0441,528,480 - 41,528,727UniSTSRnor5.0
RGSC_v3.4440,980,047 - 40,980,294UniSTSRGSC3.4
Celera439,041,952 - 39,042,199UniSTS
Cytogenetic Map4q21UniSTS
ECD04080  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2443,461,202 - 43,462,003 (+)MAPPERmRatBN7.2
Rnor_6.0441,691,549 - 41,692,348NCBIRnor6.0
Rnor_5.0441,278,671 - 41,279,470UniSTSRnor5.0
RGSC_v3.4440,730,567 - 40,731,366UniSTSRGSC3.4
Celera438,792,722 - 38,793,521UniSTS
Cytogenetic Map4q21UniSTS
ECD04612  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2443,452,957 - 43,453,725 (+)MAPPERmRatBN7.2
Rnor_6.0441,683,308 - 41,684,075NCBIRnor6.0
Rnor_5.0441,270,430 - 41,271,197UniSTSRnor5.0
RGSC_v3.4440,722,326 - 40,723,093UniSTSRGSC3.4
Celera438,784,475 - 38,785,242UniSTS
Cytogenetic Map4q21UniSTS
ECD06693  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2443,645,695 - 43,646,405 (+)MAPPERmRatBN7.2
Rnor_6.0441,876,042 - 41,876,751NCBIRnor6.0
Rnor_5.0441,463,343 - 41,464,052UniSTSRnor5.0
RGSC_v3.4440,915,060 - 40,915,769UniSTSRGSC3.4
Celera438,976,991 - 38,977,700UniSTS
Cytogenetic Map4q21UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 89 88 57 24 57 6 215 96 93 45 60 31

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001271104 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_002729285 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006236115 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008762718 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017592779 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039108099 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063286476 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063286477 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063286478 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063286479 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC106374 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC111321 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC115440 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC122630 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC128862 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473959 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000004 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000087146   ⟹   ENSRNOP00000069190
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl443,133,912 - 43,711,683 (+)Ensembl
Rnor_6.0 Ensembl441,364,441 - 41,942,023 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000111171   ⟹   ENSRNOP00000091158
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl443,133,912 - 43,711,683 (+)Ensembl
RefSeq Acc Id: NM_001271104   ⟹   NP_001258033
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8444,099,959 - 44,677,696 (+)NCBI
mRatBN7.2443,133,912 - 43,711,683 (+)NCBI
Rnor_6.0441,364,441 - 41,942,023 (+)NCBI
Rnor_5.0440,956,160 - 41,530,231 (+)NCBI
Celera438,465,580 - 39,042,946 (+)NCBI
Sequence:
RefSeq Acc Id: XM_002729285   ⟹   XP_002729331
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8444,416,181 - 44,677,700 (+)NCBI
mRatBN7.2443,450,245 - 43,707,696 (+)NCBI
Rnor_6.0441,680,658 - 41,944,685 (+)NCBI
Rnor_5.0440,956,160 - 41,530,231 (+)NCBI
RGSC_v3.4440,719,812 - 40,977,517 (+)RGD
Sequence:
RefSeq Acc Id: XM_006236115   ⟹   XP_006236177
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8444,416,891 - 44,677,700 (+)NCBI
mRatBN7.2443,450,847 - 43,707,696 (+)NCBI
Rnor_6.0441,681,121 - 41,944,685 (+)NCBI
Rnor_5.0440,956,160 - 41,530,231 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008762718   ⟹   XP_008760940
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8444,099,848 - 44,677,700 (+)NCBI
mRatBN7.2443,133,833 - 43,712,442 (+)NCBI
Rnor_6.0441,364,746 - 41,944,685 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039108099   ⟹   XP_038964027
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8444,099,848 - 44,673,704 (+)NCBI
mRatBN7.2443,133,827 - 43,707,685 (+)NCBI
RefSeq Acc Id: XM_063286476   ⟹   XP_063142546
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8444,416,198 - 44,677,700 (+)NCBI
RefSeq Acc Id: XM_063286477   ⟹   XP_063142547
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8444,099,848 - 44,677,700 (+)NCBI
RefSeq Acc Id: XM_063286478   ⟹   XP_063142548
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8444,416,198 - 44,677,700 (+)NCBI
RefSeq Acc Id: XM_063286479   ⟹   XP_063142549
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8444,099,848 - 44,677,700 (+)NCBI
RefSeq Acc Id: XP_002729331   ⟸   XM_002729285
- Peptide Label: isoform X1
- UniProtKB: A0A8L2R296 (UniProtKB/TrEMBL),   A6IE10 (UniProtKB/TrEMBL),   A0A8I6AF22 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001258033   ⟸   NM_001271104
- UniProtKB: P0CF24 (UniProtKB/Swiss-Prot),   A0A8I6AF22 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006236177   ⟸   XM_006236115
- Peptide Label: isoform X1
- UniProtKB: A0A8L2R296 (UniProtKB/TrEMBL),   A6IE10 (UniProtKB/TrEMBL),   A0A8I6AF22 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008760940   ⟸   XM_008762718
- Peptide Label: isoform X1
- UniProtKB: A0A8L2R296 (UniProtKB/TrEMBL),   A6IE10 (UniProtKB/TrEMBL),   A0A8I6AF22 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000069190   ⟸   ENSRNOT00000087146
RefSeq Acc Id: XP_038964027   ⟸   XM_039108099
- Peptide Label: isoform X4
- UniProtKB: A0A8I6AF22 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000091158   ⟸   ENSRNOT00000111171
RefSeq Acc Id: XP_063142549   ⟸   XM_063286479
- Peptide Label: isoform X5
- UniProtKB: A0A8I6AF22 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063142547   ⟸   XM_063286477
- Peptide Label: isoform X3
- UniProtKB: A0A8I6AF22 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063142546   ⟸   XM_063286476
- Peptide Label: isoform X2
- UniProtKB: P0CF24 (UniProtKB/Swiss-Prot),   A0A8I6AF22 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063142548   ⟸   XM_063286478
- Peptide Label: isoform X3
- UniProtKB: A0A8I6AF22 (UniProtKB/TrEMBL)
Protein Domains
Fork-head

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P0CF24-F1-model_v2 AlphaFold P0CF24 1-710 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13692884
Promoter ID:EPDNEW_R3409
Type:initiation region
Name:Foxp2_1
Description:forkhead box P2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0441,364,358 - 41,364,418EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1559697 AgrOrtholog
BioCyc Gene G2FUF-45593 BioCyc
Ensembl Genes ENSRNOG00000054508 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000087146.2 UniProtKB/TrEMBL
  ENSRNOT00000111171.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.10.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  1.20.5.340 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro FH_FOXP1_P2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Fork_head_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  FOXP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  FOXP-CC UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TF_fork_head_CS_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WH-like_DNA-bd_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WH_DNA-bd_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:500037 UniProtKB/Swiss-Prot
NCBI Gene 500037 ENTREZGENE
PANTHER FORKHEAD BOX P, ISOFORM C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  FORKHEAD BOX PROTEIN P2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Forkhead UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  FOXP-CC UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Foxp2 PhenoGen
PRINTS FORKHEAD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE FORK_HEAD_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  FORK_HEAD_3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_1 UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000054508 RatGTEx
SMART SM00339 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF46785 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A8I6AF22 ENTREZGENE, UniProtKB/TrEMBL
  A0A8L2R296 ENTREZGENE, UniProtKB/TrEMBL
  A6IE10 ENTREZGENE, UniProtKB/TrEMBL
  FOXP2_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-02-28 Foxp2  forkhead box P2  RGD1559697_predicted  similar to forkhead/winged-helix transcription factor 2 (predicted)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-03-07 RGD1559697_predicted  similar to forkhead/winged-helix transcription factor 2 (predicted)  LOC500037  similar to forkhead/winged-helix transcription factor 2  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC500037  similar to forkhead/winged-helix transcription factor 2      Symbol and Name status set to provisional 70820 PROVISIONAL