Cyren (cell cycle regulator of NHEJ) - Rat Genome Database

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Gene: Cyren (cell cycle regulator of NHEJ) Rattus norvegicus
Analyze
Symbol: Cyren
Name: cell cycle regulator of NHEJ
RGD ID: 1563238
Description: Predicted to enable damaged DNA binding activity and molecular adaptor activity. Predicted to be involved in several processes, including DNA metabolic process; protein localization to site of double-strand break; and regulation of double-strand break repair via nonhomologous end joining. Predicted to be part of DNA repair complex. Predicted to be active in cytoplasm; nucleus; and site of double-strand break. Orthologous to human CYREN (cell cycle regulator of NHEJ); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; acetamide; bisphenol A.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: cell cycle regulator of non-homologous end joining; LOC500077; modulator of retrovirus infection homolog; Mri; similar to RIKEN cDNA 3110062M04
RGD Orthologs
Human
Mouse
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8464,514,477 - 64,519,896 (-)NCBIGRCr8
GRCr8 Ensembl464,514,477 - 64,518,742 (-)EnsemblGRCr8 Ensembl
mRatBN7.2463,547,311 - 63,553,394 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl463,547,335 - 63,551,602 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx468,505,383 - 68,509,653 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0464,421,118 - 64,425,386 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0462,823,509 - 62,827,779 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0462,391,770 - 62,397,162 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl462,391,770 - 62,396,035 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0462,123,742 - 62,129,956 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4462,259,658 - 62,263,923 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera458,598,773 - 58,603,038 (-)NCBICelera
Cytogenetic Map4q22NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
chromosome  (IEA)
cytoplasm  (IBA,IEA,ISO,ISS)
DNA repair complex  (ISO)
nucleus  (IBA,IEA,ISO,ISS)
site of double-strand break  (ISO,ISS)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
Additional References at PubMed
PMID:17043244   PMID:24610814   PMID:28959974  


Genomics

Comparative Map Data
Cyren
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8464,514,477 - 64,519,896 (-)NCBIGRCr8
GRCr8 Ensembl464,514,477 - 64,518,742 (-)EnsemblGRCr8 Ensembl
mRatBN7.2463,547,311 - 63,553,394 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl463,547,335 - 63,551,602 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx468,505,383 - 68,509,653 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0464,421,118 - 64,425,386 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0462,823,509 - 62,827,779 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0462,391,770 - 62,397,162 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl462,391,770 - 62,396,035 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0462,123,742 - 62,129,956 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4462,259,658 - 62,263,923 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera458,598,773 - 58,603,038 (-)NCBICelera
Cytogenetic Map4q22NCBI
CYREN
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh387135,092,303 - 135,172,469 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl7135,092,363 - 135,170,795 (-)EnsemblGRCh38hg38GRCh38
GRCh377134,777,061 - 134,855,459 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 367134,501,077 - 134,505,987 (-)NCBINCBI36Build 36hg18NCBI36
Celera7129,588,008 - 129,593,008 (-)NCBICelera
Cytogenetic Map7q33NCBI
HuRef7129,153,185 - 129,158,235 (-)NCBIHuRef
CHM1_17134,784,466 - 134,789,511 (-)NCBICHM1_1
T2T-CHM13v2.07136,400,107 - 136,478,562 (-)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v27134,194,890 - 134,199,936 (-)NCBI
Cyren
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39634,848,706 - 34,855,024 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl634,848,706 - 34,854,995 (-)EnsemblGRCm39 Ensembl
GRCm38634,871,771 - 34,878,065 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl634,871,771 - 34,878,060 (-)EnsemblGRCm38mm10GRCm38
MGSCv37634,821,771 - 34,828,065 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36634,801,923 - 34,808,173 (-)NCBIMGSCv36mm8
Celera634,871,894 - 34,878,198 (-)NCBICelera
Cytogenetic Map6B1NCBI
cM Map615.18NCBI
CYREN
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v26171,909,156 - 171,989,897 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1723,996,881 - 24,001,781 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v07127,130,587 - 127,148,824 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.17139,562,128 - 139,646,355 (-)NCBIpanpan1.1PanPan1.1panPan2
CYREN
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11612,994,508 - 13,003,632 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1612,994,479 - 12,998,435 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1614,006,612 - 14,015,846 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01612,975,072 - 12,984,319 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1612,974,857 - 12,978,723 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11613,417,069 - 13,426,299 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01612,516,338 - 12,525,575 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01612,655,462 - 12,664,703 (+)NCBIUU_Cfam_GSD_1.0
Cyren
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440511820,634,465 - 20,642,214 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936579768,252 - 770,440 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936579768,153 - 776,053 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CYREN
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.11814,127,724 - 14,133,486 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21814,935,739 - 14,940,802 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CYREN
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.121103,838,218 - 103,843,151 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl21103,838,988 - 103,842,620 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666072755,218 - 760,240 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cyren
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476515,492,165 - 15,494,214 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476515,491,582 - 15,495,958 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Cyren
17 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:88
Count of miRNA genes:67
Interacting mature miRNAs:80
Transcripts:ENSRNOT00000029818
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
5685012Bmd87Bone mineral density QTL 875.1tibia mineral mass (VT:1000283)bone mineral content (CMO:0001554)43511329080113290Rat
1358352Srcrt3Stress Responsive Cort QTL 32.29blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)439431983123203361Rat
1549843Bw53Body weight QTL 530.0001body mass (VT:0001259)body weight gain (CMO:0000420)459753119104753119Rat
61445Strs3Sensitivity to stroke QTL 33cerebrum integrity trait (VT:0010549)post-insult time to onset of cerebrovascular lesion (CMO:0002343)44140057786400577Rat
6893678Bw108Body weight QTL 1082.60.006body mass (VT:0001259)body weight (CMO:0000012)44442502489425024Rat
5685009Bmd86Bone mineral density QTL 863.7tibia mineral mass (VT:1000283)bone mineral density (CMO:0001226)457613242102613242Rat
1331807Rf31Renal function QTL 312.988urine potassium amount (VT:0010539)urine potassium level (CMO:0000128)44049044275726188Rat
634311Sach7Saccharin preference QTL 7taste sensitivity trait (VT:0001986)saccharin intake volume to total fluid intake volume ratio (CMO:0001601)45807987582597589Rat
1358363Sradr3Stress Responsive Adrenal Weight QTL 36.19adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)458817672103817672Rat
61330Eau1Experimental allergic uveoretinitis QTL 10.0003uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)426234499134199155Rat
738009Sach4Saccharine consumption QTL 44.90.000016consumption behavior trait (VT:0002069)saccharin intake volume to total fluid intake volume ratio (CMO:0001601)460916264184426481Rat
631261Tcas3Tongue tumor susceptibility QTL 36.88tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)41170660492690519Rat
6478772Anxrr49Anxiety related response QTL 490.15488defecation behavior trait (VT:0010462)defecation rate (CMO:0000998)464084079109084079Rat
61336Bp21Blood pressure QTL 214.6arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)45808014680212111Rat
2312569Pur19Proteinuria QTL 193.40.001urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)459836842104836842Rat
8655961Kidm43Kidney mass QTL 4318kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)43726957782269577Rat
1354612Foco1Food consumption QTL 18.87eating behavior trait (VT:0001431)food intake rate (CMO:0000427)445429897149763204Rat
6909128Pancm4Pancreatic morphology QTL 411.35pancreas mass (VT:0010144)pancreas wet weight (CMO:0000626)427862204126119996Rat
634344Hcar7Hepatocarcinoma resistance QTL 77.8liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)46104105794638356Rat
2303168Bp330Blood pressure QTL 3304.250.017arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)45889999148002343Rat
61475Aia2Adjuvant induced arthritis QTL 25.8joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)44047145375939996Rat
8694439Bw168Body weight QTL 1689.570.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)44140060386400603Rat
738031Alc14Alcohol consumption QTL 147.60.00003consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)460916264174095838Rat
8655906Rf60Renal function QTL 603.8blood creatinine amount (VT:0005328)creatinine clearance (CMO:0000765)43044896182336920Rat
1576305Emca6Estrogen-induced mammary cancer QTL 65.8mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)445429709157555683Rat
61418Pia5Pristane induced arthritis QTL 54.5joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)463245026129846354Rat
631651Bp124Blood pressure QTL 1243arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)464209744109209744Rat
738016Alc16Alcohol consumption QTL 163.60.00015consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)460916264184426481Rat
1558651Swd3Spike wave discharge measurement QTL 34.620.000024brain electrophysiology trait (VT:0010557)brain spike-and-wave discharge frequency (CMO:0001742)44140057786400577Rat
1358203Stl19Serum triglyceride level QTL 192.80.002blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)42192515166925151Rat
1354660Salc1Saline consumption QTL 111.26drinking behavior trait (VT:0001422)saline drink intake rate (CMO:0001627)445429897149763204Rat
1641833Alc21Alcohol consumption QTL 218.60.0001drinking behavior trait (VT:0001422)ethanol drink intake rate (CMO:0001407)457664252127749483Rat
1298082Stresp4Stress response QTL 4blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)451085655113588029Rat
631546Bp86Blood pressure QTL 863.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)45807987592690793Rat
6478743Anxrr40Anxiety related response QTL 400.83076defecation behavior trait (VT:0010462)defecation rate (CMO:0000998)464084079109084079Rat
1300139Hrtrt6Heart rate QTL 62.85heart pumping trait (VT:2000009)heart rate (CMO:0000002)440490442117737312Rat
70200Alc18Alcohol consumption QTL 189.2drinking behavior trait (VT:0001422)ethanol intake volume to total fluid intake volume ratio (CMO:0001591)457613339151163960Rat
61434Cia3Collagen induced arthritis QTL 34.8joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)463224393108224393Rat
7394826Bw126Body weight QTL 1260.002body mass (VT:0001259)body weight gain (CMO:0000420)46390045888813920Rat
12798520Anxrr55Anxiety related response QTL 554.450.01locomotor behavior trait (VT:0001392)number of rearing movements with lid-pushing in an experimental apparatus (CMO:0002715)433538597116185060Rat
4889969Bss96Bone structure and strength QTL 964.9tibia size trait (VT:0100001)tibia cortical bone volume (CMO:0001725)457613242102613242Rat
2316958Gluco58Glucose level QTL 5810blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)412212457182430611Rat
4889972Bss97Bone structure and strength QTL 975.6tibia size trait (VT:0100001)tibia total bone volume (CMO:0001724)457613242102613242Rat
631671Iddm11Insulin dependent diabetes mellitus QTL 113.60.0012blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)45960331980216952Rat
6478684Anxrr30Anxiety related response QTL 300.00087defecation behavior trait (VT:0010462)defecation rate (CMO:0000998)464084079109084079Rat

Markers in Region
RH134505  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2463,547,560 - 63,547,745 (+)MAPPERmRatBN7.2
Rnor_6.0462,391,996 - 62,392,180NCBIRnor6.0
Rnor_5.0462,123,968 - 62,124,152UniSTSRnor5.0
RGSC_v3.4462,259,884 - 62,260,068UniSTSRGSC3.4
Celera458,598,999 - 58,599,183UniSTS
RH 3.4 Map4393.4UniSTS
Cytogenetic Map4q22UniSTS
AI234019  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2463,553,055 - 63,553,209 (+)MAPPERmRatBN7.2
Rnor_6.0462,397,489 - 62,397,642NCBIRnor6.0
Rnor_5.0462,129,461 - 62,129,614UniSTSRnor5.0
RGSC_v3.4462,265,377 - 62,265,530UniSTSRGSC3.4
Celera458,604,492 - 58,604,645UniSTS
RH 3.4 Map4397.9UniSTS
Cytogenetic Map4q22UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31

Sequence


Ensembl Acc Id: ENSRNOT00000029818   ⟹   ENSRNOP00000034483
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl464,514,477 - 64,518,742 (-)Ensembl
mRatBN7.2 Ensembl463,547,335 - 63,551,602 (-)Ensembl
Rnor_6.0 Ensembl462,391,770 - 62,396,035 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000109467   ⟹   ENSRNOP00000095512
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl464,515,196 - 64,518,742 (-)Ensembl
mRatBN7.2 Ensembl463,548,054 - 63,551,602 (-)Ensembl
RefSeq Acc Id: NM_001024325   ⟹   NP_001019496
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8464,514,477 - 64,518,742 (-)NCBI
mRatBN7.2463,547,335 - 63,551,602 (-)NCBI
Rnor_6.0462,391,770 - 62,396,035 (-)NCBI
Rnor_5.0462,123,742 - 62,129,956 (-)NCBI
RGSC_v3.4462,259,658 - 62,263,923 (-)RGD
Celera458,598,773 - 58,603,038 (-)RGD
Sequence:
RefSeq Acc Id: XM_006236275   ⟹   XP_006236337
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8464,514,482 - 64,519,896 (-)NCBI
mRatBN7.2463,547,311 - 63,553,394 (-)NCBI
Rnor_6.0462,391,772 - 62,397,162 (-)NCBI
Rnor_5.0462,123,742 - 62,129,956 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001019496 (Get FASTA)   NCBI Sequence Viewer  
  XP_006236337 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH79043 (Get FASTA)   NCBI Sequence Viewer  
  EDM15318 (Get FASTA)   NCBI Sequence Viewer  
  EDM15319 (Get FASTA)   NCBI Sequence Viewer  
  EDM15320 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000034483
  ENSRNOP00000034483.2
GenBank Protein Q6AYH4 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_001019496   ⟸   NM_001024325
- UniProtKB: Q6AYH4 (UniProtKB/Swiss-Prot),   A6IEN1 (UniProtKB/TrEMBL),   A0A8I6GL65 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006236337   ⟸   XM_006236275
- Peptide Label: isoform X1
- Sequence:
Ensembl Acc Id: ENSRNOP00000034483   ⟸   ENSRNOT00000029818
Ensembl Acc Id: ENSRNOP00000095512   ⟸   ENSRNOT00000109467

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q6AYH4-F1-model_v2 AlphaFold Q6AYH4 1-160 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13692956
Promoter ID:EPDNEW_R3480
Type:initiation region
Name:LOC500077_1
Description:similar to RIKEN cDNA 3110062M04
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0462,396,073 - 62,396,133EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1563238 AgrOrtholog
BioCyc Gene G2FUF-45262 BioCyc
Ensembl Genes ENSRNOG00000026958 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000029818 ENTREZGENE
  ENSRNOT00000029818.3 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:7114933 IMAGE-MGC_LOAD
InterPro MRI UniProtKB/Swiss-Prot
KEGG Report rno:500077 UniProtKB/Swiss-Prot
MGC_CLONE MGC:93977 IMAGE-MGC_LOAD
NCBI Gene 500077 ENTREZGENE
PANTHER CELL CYCLE REGULATOR OF NON-HOMOLOGOUS END JOINING UniProtKB/Swiss-Prot
  PTHR14566 UniProtKB/Swiss-Prot
Pfam MRI UniProtKB/Swiss-Prot
PhenoGen Cyren PhenoGen
RatGTEx ENSRNOG00000026958 RatGTEx
UniProt A0A8I6GL65 ENTREZGENE, UniProtKB/TrEMBL
  A6IEN1 ENTREZGENE, UniProtKB/TrEMBL
  CYREN_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2018-03-01 Cyren  cell cycle regulator of NHEJ  LOC500077  similar to RIKEN cDNA 3110062M04  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-02-09 LOC500077  similar to RIKEN cDNA 3110062M04      Symbol and Name status set to provisional 70820 PROVISIONAL