Wnt16 (Wnt family member 16) - Rat Genome Database

Name: Wnt16
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

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Gene: Wnt16 (Wnt family member 16) Rattus norvegicus

Analyze

Symbol:

Wnt16

Name:

Wnt family member 16

RGD ID:

1562253

Description:

Predicted to be involved in several processes, including keratinocyte proliferation; oxidative stress-induced premature senescence; and positive regulation of intracellular signal transduction. Predicted to localize to cytoplasm and extracellular space. Orthologous to human WNT16 (Wnt family member 16); PARTICIPATES IN Wnt signaling pathway; Wnt signaling, canonical pathway; basal cell carcinoma pathway; INTERACTS WITH 6-propyl-2-thiouracil; acrylamide; bisphenol A.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Also known as:

protein Wnt-16; wingless-related MMTV integration site 16; wingless-type MMTV integration site family, member 16

RGD Orthologs

Human

Mouse

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	WNT16 (Wnt family member 16)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, Treefam
Mus musculus (house mouse):	Wnt16 (wingless-type MMTV integration site family, member 16)	HGNC	Treefam, EggNOG, OrthoMCL, NCBI, OMA, HomoloGene, Inparanoid, Panther, OrthoDB, Ensembl
Chinchilla lanigera (long-tailed chinchilla):	Wnt16 (Wnt family member 16)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	WNT16 (Wnt family member 16)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	WNT16 (Wnt family member 16)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Wnt16 (Wnt family member 16)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	WNT16 (Wnt family member 16)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (African green monkey):	WNT16 (Wnt family member 16)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Wnt16 (Wnt family member 16)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	WNT16 (Wnt family member 16)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|TreeFam)
Mus musculus (house mouse):	Wnt16 (wingless-type MMTV integration site family, member 16)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|TreeFam)
Danio rerio (zebrafish):	wnt16 (wingless-type MMTV integration site family, member 16)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|TreeFam)
Caenorhabditis elegans (roundworm):	egl-20	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|TreeFam)

Latest Assembly:

Rnor_6.0 - RGSC Genome Assembly v6.0

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	4	50,820,968 - 50,831,380 (+)	NCBI
Rnor_6.0 Ensembl	4	49,369,296 - 49,379,703 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_6.0	4	49,369,246 - 49,388,156 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	4	49,160,228 - 49,178,195 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	4	48,609,677 - 48,620,317 (+)	NCBI	RGSC3.4		rn4	RGSC3.4
Celera	4	46,027,411 - 46,037,822 (+)	NCBI		Celera
Cytogenetic Map	4	q22	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

pleomorphic xanthoastrocytoma (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dichloroethane (ISO)

17beta-estradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

5-aza-2'-deoxycytidine (ISO)

6-propyl-2-thiouracil (EXP)

acrylamide (EXP)

arsane (ISO)

arsenic atom (ISO)

arsenite(3-) (ISO)

arsenous acid (ISO)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

bisphenol A (EXP)

copper atom (ISO)

copper(0) (ISO)

diarsenic trioxide (ISO)

folic acid (ISO)

irinotecan (ISO)

methimazole (EXP)

methotrexate (ISO)

paracetamol (ISO)

progesterone (ISO)

trichostatin A (ISO)

valproic acid (ISO)

vinclozolin (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

biological_process (ND)

bone remodeling (ISO)

canonical Wnt signaling pathway (IBA)

cardiac epithelial to mesenchymal transition (ISO)

cell fate commitment (IBA)

keratinocyte differentiation (ISO)

keratinocyte proliferation (ISO)

negative regulation of cell death (ISO)

neuron differentiation (IBA)

oxidative stress-induced premature senescence (ISO)

positive regulation of gene expression (ISO)

positive regulation of JNK cascade (ISO)

positive regulation of phosphatidylinositol 3-kinase signaling (ISO)

replicative senescence (ISO)

Cellular Component

cellular_component (ND)

cytoplasm (ISO)

extracellular space (IBA,ISO)

Molecular Function

cytokine activity (IBA)

frizzled binding (IBA)

molecular_function (ND)

Molecular Pathway Annotations Click to see Annotation Detail View

basal cell carcinoma pathway (IEA)

Hedgehog signaling pathway (IEA)

Wnt signaling pathway (IEA,ISO)

Wnt signaling, canonical pathway (ISO)

References

References - curated


1.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Pipeline to import KEGG annotations from KEGG into RGD
3.	RGD automated import pipeline for gene-chemical interactions
4.	RGD comprehensive gene curation
5.	Roel Nusse - Howard Hughes Medical Institute and the Department of Developmental Biology at Stanford University, California, USA
6.	van Amerongen R, etal., Sci Signal. 2008 Sep 2;1(35):re9.

Additional References at PubMed

PMID:10500199	PMID:15756456	PMID:16007226	PMID:17200136	PMID:19156209	PMID:19951988	PMID:22792071

Genomics

Comparative Map Data

Wnt16
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	4	50,820,968 - 50,831,380 (+)	NCBI
Rnor_6.0 Ensembl	4	49,369,296 - 49,379,703 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_6.0	4	49,369,246 - 49,388,156 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	4	49,160,228 - 49,178,195 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	4	48,609,677 - 48,620,317 (+)	NCBI	RGSC3.4		rn4	RGSC3.4
Celera	4	46,027,411 - 46,037,822 (+)	NCBI		Celera
Cytogenetic Map	4	q22	NCBI

WNT16
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38.p13 Ensembl	7	121,325,367 - 121,341,104 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh38	7	121,325,367 - 121,341,104 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh37	7	120,965,421 - 120,981,158 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	7	120,752,657 - 120,768,394 (+)	NCBI	NCBI36		hg18	NCBI36
Build 34	7	120,563,040 - 120,575,108	NCBI
Celera	7	115,774,608 - 115,790,350 (+)	NCBI
Cytogenetic Map	7	q31.31	NCBI
HuRef	7	115,328,649 - 115,344,394 (+)	NCBI		HuRef
CHM1_1	7	120,898,727 - 120,914,470 (+)	NCBI		CHM1_1
CRA_TCAGchr7v2	7	120,360,161 - 120,375,904 (+)	NCBI

Wnt16
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	6	22,288,179 - 22,298,521 (+)	NCBI	GRCm39		mm39
GRCm39 Ensembl	6	22,288,226 - 22,298,521 (+)	Ensembl
GRCm38	6	22,288,178 - 22,298,522 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	6	22,288,227 - 22,298,522 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	6	22,238,227 - 22,248,522 (+)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	6	22,238,231 - 22,248,523 (+)	NCBI			mm8
Celera	6	22,342,361 - 22,352,644 (+)	NCBI		Celera
Cytogenetic Map	6	A3.1	NCBI

Wnt16
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955479	3,065,295 - 3,077,260 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955479	3,065,312 - 3,077,260 (+)	NCBI	ChiLan1.0	ChiLan1.0

WNT16
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	7	126,025,337 - 126,041,057 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	7	126,025,337 - 126,041,057 (+)	Ensembl	panpan1.1		panPan2
Mhudiblu_PPA_v0	7	113,338,322 - 113,354,002 (+)	NCBI	Mhudiblu_PPA_v0		panPan3

WNT16
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1 Ensembl	14	59,387,846 - 59,396,622 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
CanFam3.1	14	59,388,034 - 59,404,812 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1

Wnt16
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
SpeTri2.0	NW_004936605	3,855,640 - 3,867,166 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

WNT16
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	18	25,621,830 - 25,633,858 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	18	25,621,802 - 25,633,730 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	18	27,226,372 - 27,238,355 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

WNT16
(Chlorocebus sabaeus - African green monkey)

Vervet Assembly	Chr	Position (strand)	Source	Genome Browsers
Vervet Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	21	90,143,097 - 90,159,628 (+)	NCBI
ChlSab1.1 Ensembl	21	90,147,692 - 90,157,750 (+)	Ensembl

Wnt16
(Heterocephalus glaber - naked mole-rat)

Molerat Assembly	Chr	Position (strand)	Source	Genome Browsers
Molerat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624783	14,749,318 - 14,762,933 (-)	NCBI

Position Markers

Wnt16

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Rnor_6.0	4	49,379,305 - 49,379,532	NCBI	Rnor6.0
Rnor_5.0	4	49,170,178 - 49,170,405	UniSTS	Rnor5.0
RGSC_v3.4	4	48,619,919 - 48,620,146	UniSTS	RGSC3.4
Celera	4	46,037,424 - 46,037,651	UniSTS
Cytogenetic Map	4	q22	UniSTS

Wnt16

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Rnor_6.0	4	49,379,350 - 49,379,532	NCBI	Rnor6.0
Rnor_5.0	4	49,170,223 - 49,170,405	UniSTS	Rnor5.0
RGSC_v3.4	4	48,619,964 - 48,620,146	UniSTS	RGSC3.4
Celera	4	46,037,469 - 46,037,651	UniSTS
Cytogenetic Map	4	q22	UniSTS

QTLs in Region (Rnor_6.0)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
619616	Bp79	Blood pressure QTL 79		0.0292	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	4	3043231	79575658	Rat
2303168	Bp330	Blood pressure QTL 330	4.25	0.017	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	4	3043231	145254791	Rat
2302371	Stl22	Serum triglyceride level QTL 22	5.15		blood triglyceride amount (VT:0002644)	serum triglyceride level (CMO:0000360)	4	3044017	55791834	Rat
1358203	Stl19	Serum triglyceride level QTL 19	2.8	0.002	blood triglyceride amount (VT:0002644)	serum triglyceride level (CMO:0000360)	4	3044017	64915903	Rat
631642	Stl2	Serum triglyceride level QTL 2	3.3		blood triglyceride amount (VT:0002644)	serum triglyceride level (CMO:0000360)	4	3047807	55324857	Rat
631261	Tcas3	Tongue tumor susceptibility QTL 3	6.88		tongue integrity trait (VT:0010553)	number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)	4	7342404	92484039	Rat
2316958	Gluco58	Glucose level QTL 58	10		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	4	7850904	182171018	Rat
9590304	Scort17	Serum corticosterone level QTL 17	4.96	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	4	8052189	53052189	Rat
6478724	Anxrr35	Anxiety related response QTL 35		0.00449	defecation behavior trait (VT:0010462)	defecation measurement (CMO:0000997)	4	8052189	53052189	Rat
6478766	Anxrr47	Anxiety related response QTL 47		0.09637	locomotor behavior trait (VT:0001392)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	4	8052189	53052189	Rat
6478769	Anxrr48	Anxiety related response QTL 48		0.02514	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	8052189	53052189	Rat
8552906	Pigfal3	Plasma insulin-like growth factor 1 level QTL 3			blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	4	8052189	53052189	Rat
8694374	Bw155	Body weight QTL 155	3.39	0.001	body lean mass (VT:0010483)	lean tissue morphological measurement (CMO:0002184)	4	8052189	53052189	Rat
2303585	Bw86	Body weight QTL 86	4		body mass (VT:0001259)	body weight (CMO:0000012)	4	12638974	57638974	Rat
7387227	Uae40	Urinary albumin excretion QTL 40	2.9	0.0052	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	4	16149941	61149941	Rat
61412	Pia2	Pristane induced arthritis QTL 2	3.9		joint integrity trait (VT:0010548)	post-insult time to onset of experimental arthritis (CMO:0001450)	4	18222187	61039065	Rat
10755501	Bp390	Blood pressure QTL 390	2.5		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	4	23850384	169318094	Rat
6909122	Insul22	Insulin level QTL 22	4.63		blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	4	23991721	76238799	Rat
6909128	Pancm4	Pancreatic morphology QTL 4	11.35		pancreas mass (VT:0010144)	pancreas wet weight (CMO:0000626)	4	23991721	76238799	Rat
1578655	Bmd11	Bone mineral density QTL 11	11		femur mineral mass (VT:0010011)	total volumetric bone mineral density (CMO:0001728)	4	24631874	69631874	Rat
8655906	Rf60	Renal function QTL 60	3.8		blood creatinine amount (VT:0005328)	creatinine clearance (CMO:0000765)	4	26654749	81874227	Rat
12798520	Anxrr55	Anxiety related response QTL 55	4.45	0.01	locomotor behavior trait (VT:0001392)	number of rearing movements with lid-pushing in an experimental apparatus (CMO:0002715)	4	29549895	112807890	Rat
11530004	Niddm71	Non-insulin dependent diabetes mellitus QTL 71		0.001	blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	4	31554484	51311866	Rat
8552782	Vie1	Viral induced encephalitis QTL 1	26.4		brain integrity trait (VT:0010579)	encephalitis incidence/prevalence measurement (CMO:0002361)	4	31825560	83531021	Rat
8552801	Bw143	Body weight QTL 143	7.3		body mass (VT:0001259)	change in body weight to body weight ratio (CMO:0002216)	4	31825560	83531021	Rat
8552809	Vie5	Viral induced encephalitis QTL 5	25.3		brain integrity trait (VT:0010579)	encephalitis incidence/prevalence measurement (CMO:0002361)	4	31825560	83531021	Rat
2313401	Anxrr27	Anxiety related response QTL 27			aggression-related behavior trait (VT:0015014)	tameness/aggressiveness composite score (CMO:0002136)	4	33637803	61708341	Rat
8655961	Kidm43	Kidney mass QTL 43	18		kidney mass (VT:0002707)	both kidneys wet weight (CMO:0000085)	4	34277932	99067150	Rat
1358352	Srcrt3	Stress Responsive Cort QTL 3	2.29		blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	4	36615599	145611886	Rat
61475	Aia2	Adjuvant induced arthritis QTL 2	5.8		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	4	37685175	73066691	Rat
1331807	Rf31	Renal function QTL 31	2.988		urine potassium amount (VT:0010539)	urine potassium level (CMO:0000128)	4	37703272	75345433	Rat
1300139	Hrtrt6	Heart rate QTL 6	2.85		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	4	37703272	115372927	Rat
61445	Strs3	Sensitivity to stroke QTL 3	3		cerebrum integrity trait (VT:0010549)	post-insult time to onset of cerebrovascular lesion (CMO:0002343)	4	39208222	84208222	Rat
8694439	Bw168	Body weight QTL 168	9.57	0.001	retroperitoneal fat pad mass (VT:0010430)	retroperitoneal fat pad weight to body weight ratio (CMO:0000635)	4	39208247	84208247	Rat
6893678	Bw108	Body weight QTL 108	2.6	0.006	body mass (VT:0001259)	body weight (CMO:0000012)	4	42415777	87415777	Rat
1576305	Emca6	Estrogen-induced mammary cancer QTL 6	5.8		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	4	43414605	155469929	Rat
1354660	Salc1	Saline consumption QTL 1	11.26		drinking behavior trait (VT:0001422)	saline drink intake rate (CMO:0001627)	4	43414792	146942075	Rat
1354612	Foco1	Food consumption QTL 1	8.87		eating behavior trait (VT:0001431)	food intake rate (CMO:0000427)	4	43414792	146942075	Rat
1298082	Stresp4	Stress response QTL 4			blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	4	46898276	145611886	Rat
10450821	Scl77	Serum cholesterol level QTL 77	4.1	0.01	blood VLDL cholesterol amount (VT:0005144)	blood high density lipoprotein cholesterol level (CMO:0000052)	4	47685694	55791834	Rat
10450825	Scl78	Serum cholesterol level QTL 78	3.7	0.01	blood VLDL cholesterol amount (VT:0005144)	blood low density lipoprotein cholesterol level (CMO:0000053)	4	47685694	55791834	Rat
10450818	Scl76	Serum cholesterol level QTL 76	3.6	0.01	blood VLDL cholesterol amount (VT:0005144)	blood high density lipoprotein cholesterol level (CMO:0000052)	4	47685694	55791834	Rat

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	122
Count of miRNA genes:	95
Interacting mature miRNAs:	99
Transcripts:	ENSRNOT00000007822
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium							2	2			1		2
Low	2	6			11		6	7	62	14	24	1	6
Below cutoff	1	23	10	1	8	1		2	12	6	7	8

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001109223	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH473959	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JACYVU010000141	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSRNOT00000007822 ⟹ ENSRNOP00000007822

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	4	49,369,296 - 49,379,703 (+)	Ensembl

RefSeq Acc Id:

NM_001109223 ⟹ NP_001102693

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	4	50,820,968 - 50,831,380 (+)	NCBI
Rnor_6.0	4	49,369,296 - 49,379,703 (+)	NCBI
Rnor_5.0	4	49,160,228 - 49,178,195 (+)	NCBI
RGSC_v3.4	4	48,609,677 - 48,620,317 (+)	RGD
Celera	4	46,027,411 - 46,037,822 (+)	RGD

Sequence:

show sequence

CATCAGCAGAAGTTTCTCACCTTGGAAAGCGAGGGACGCTCCCGCATCTCCAGCACGTACTCAC
CTCTGCGCGAGTGGACCTTAGGCTACTTTCTCCACCGCATCTTGCCTAGGGGACTGCCGATTGT
CTCTGTCCTTGCTGACCTTTTTAATGTTACCTTCCAGGGGAAAGAGGGCAAGGAACAACTGGGT
GCTAGGAAACTGACCCCAGGCCCTGCGGGCCTCTGGAGAGAGGAGACAGGAGAGGAGTGACTGG
GGCTGGGGGCCTCCATGCACGGGCCATGGACAGAGCGGCGCTCCTGGCCCTGCCCAGCTTGTGT
GCGCTGTGGGCAGCCGTGCTGTCGCTGCTCCCCTGCGGAACCCAGGGCAACTGGATGTGGTTGG
GCATCGCCTCCTTCGGGGTACCGGAGAAGCTGGGCTGCTCCGGCTTGCCGCTGAACAGCCGCCA
GAAGGAGCTGTGCAAGAGGAAACCGTACCTGCTGCCTAGCATCCGCGAGGGCGCCAGGCTGGGC
ATTCAGGAGTGCAGAAGCCAGTTCCGACACGAGAGGTGGAACTGTATGGTCGCCACTGCCACCT
CCACCCAGCTCGCTACAGCTCCCCTCTTTGGCTATGAACTGAGTAGCGGCACCAAGGAGACAGC
ATTCATTTATGCCATCATGGCTGCAGGCCTGGTGCACTCTGTAACCAGGTCATGCAGTGCAGGC
AACATGACCGAGTGTTCCTGTGACACCACCTTGCAGAACAGTGGCTCAGCGAGTGAAGGCTGGC
ACTGGGGTGGATGCTCTGATGATGTCCAGTACGGCATGTGGTTCAGCAGAAAGTTTCTAGACTT
ACCCGTCAGAAACACCACAGAAAAAGAAAGCAAAGTCCTGCTAGCCATGAATCTACACAACAAC
GAGGCAGGGCGGCAGGCTGTCGCCAAGTTAATGTCTGTGGACTGCCGCTGCCATGGTGTTTCCG
GCTCCTGTGCTGTGAAAACCTGCTGGAAAACTATGTCTTCTTTTGAAAAGATTGGGTATTTTTT
AAAGGATAAATATGAAAACAGCATCCAGATCTCAGACAAAACCAAGAGGAAGATGCGCAGGAGA
GAAAAAGACCAGAGGCAGACACCCATTCTCAAGGATGACTTGCTATACGTCCATAAGTCTCCCA
ACTACTGCGTGGAGAACAAGAAACTGGGTATTCCTGGGACCCAGGGCAGAGAGTGCAACCGTAC
GTCAGGAGGCGCGGATGGCTGTAACCTCCTCTGCTGTGGCCGAGGCTACAACACCCACGTAGTC
AGGCACGTGGAGAGGTGTGAGTGTAAGTTTATCTGGTGCTGTTACGTCCGCTGCAGGAGGTGTG
AAAGCATGACCGATGTCCACACTTGTAAGTAACCTCTCCATCCAGCCTAGCATGAGATTGCCTC
AGTAACAACCAGCTGTGTTGTCATCTGAAGGGCGCCCCCTACTGTGCACGGCGGGGAAGTCGCT
GCCTGTAAGAGTGTTCCCAGACCCCTGGGCCAGGCTGAGATTTCTTCTTTCTGGCAGACTTCAA
ATCCCAAGCTGCACGGCAGGATTGCTTGGGATTCTAAAGTTGAAAAGGTTGGCAGTCGCCTTTG
GATAGTTTGGGGAATATACGTTGGCATATAGGGAACAGCAATCTGTTTCCAAAGCAATATGG

hide sequence

RefSeq Acc Id:

XM_006236143 ⟹ XP_006236205

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	4	49,369,246 - 49,388,156 (+)	NCBI
Rnor_5.0	4	49,160,228 - 49,178,195 (+)	NCBI

Sequence:

show sequence

GTCGGGGGAGGAGATGCGAGGAGAAGCCTGGGGCGATGGAGACACAGAGACATCAGCAGAAGTT
TCTCACCTTGGAAAGCGAGGGACGCTCCCGCATCTCCAGCACGTACTCACCTCTGCGCGAGTGG
ACCTTAGGCTACTTTCTCCACCGCATCTTGCCTAGGGGACTGCCGATTGTCTCTGTCCTTGCTG
ACCTTTTTAATGTTACCTTCCAGGGGAAAGAGGGCAAGGAACAACTGGGTGCTAGGAAACTGAC
CCCAGGCCCTGCGGGCCTCTGGAGAGAGGAGACAGGAGAGGAGTGACTGGGGCTGGGGGCCTCC
ATGCACGGGCCATGGACAGAGCGGCGCTCCTGGCCCTGCCCAGCTTGTGTGCGCTGTGGGCAGC
CGTGCTGTCGCTGCTCCCCTGCGGAACCCAGGGCAACTGGATGTGGTTGGGCATCGCCTCCTTC
GGGGTACCGGAGAAGCTGGGCTGCTCCGGCTTGCCGCTGAACAGCCGCCAGAAGGAGCTGTGCA
AGAGGAAACCGTACCTGCTGCCTAGCATCCGCGAGGGCGCCAGGCTGGGCATTCAGGAGTGCAG
AAGCCAGTTCCGACACGAGAGGTGGAACTGTATGGTCGCCACTGCCACCTCCACCCAGCTCGCT
ACAGCTCCCCTCTTTGGCTATGAACTGAGTAGCGGCACCAAGGAGACAGCATTCATTTATGCCA
TCATGGCTGCAGGCCTGGTGCACTCTGTAACCAGGTCATGCAGTGCAGGCAACATGACCGAGTG
TTCCTGTGACACCACCTTGCAGAACAGTGGCTCAGCGAGTGAAGGCTGGCACTGGGGTGGATGC
TCTGATGATGTCCAGTACGGCATGTGGTTCAGCAGAAAGTTTCTAGACTTACCCGTCAGAAACA
CCACAGAAAAAGAAAGCAAAGTCCTGCTAGCCATGAATCTACACAACAACGAGGCAGGGCGGCA
GGCTGTCGCCAAGTTAATGTCTGTGGACTGCCGCTGCCATGGTGTTTCCGGCTCCTGTGCTGTG
AAAACCTGCTGGAAAACTATGTCTTCTTTTGAAAAGATTGGGTATTTTTTAAAGGATAAATATG
AAAACAGCATCCAGATCTCAGACAAAACCAAGAGGAAGATGCGCAGGAGAGAAAAAGACCAGAG
GCAGACACCCATTCTCAAGGATGACTTGCTATACGTCCATAAGTCTCCCAACTACTGCGTGGAG
AACAAGAAACTGGGTATTCCTGGGACCCAGGGCAGAGAGTGCAACCGTACGTCAGGAGGCGCGG
ATGGCTGTAACCTCCTCTGCTGTGGCCGAGGCTACAACACCCACGTAGTCAGGCACGTGGAGAG
GTGTGAGTGTAAGTTTATCTGGTGCTGTTACGTCCGCTGCAGGAGGTGTGAAAGCATGACCGAT
GTCCACACTTGGCTCACAGTTGGATTACCCAAGACGAGATGATCTGAGTAAATAAAATAATTTA
AGTCAAAATAAAATAAATACACCCTCACTGATGTTCTGATAGCCAATTGCTGTGTAAGTTTTTT
TTCTTTGCAAAGATTATCATTTGTAATGGTTTATCTCCGCACACAAGGAAAAACAATAACAGAG
GAGGGGTTTGCACCAGGTTAAAGCTTTGAAAAGAAACCTTAAGTGTCACGAAGAGAAGATAACA
GTAAGTGTGGATGGAGTTGACACAAACTAAAGGTTCTTATGTCTTTTTAGTGAGCAAAGTGTGT
GGAAGCCTTCATTCGACTTGTAAGACTTGGAAGCAGGGACTGGGGATTTAGCTCAGTGGTAGAG
AGCTTGCCTAGTAAGCGCAAGGCCCTGGGTTCGGTCCCCAGCTCCGAAAAAAAAAAAGAATTGG
AAGCAAATAGTGCAGTAAAGACTGCCCCTGTTAAAGAGCTGGTCCAGCCGGGGGTTGACTGACT
TCCACGGCTGCCAAGAAACATCTTAGTAACAGCCTAGCATCTGTGGTCATAATCGATATCCACC
TAGTTCTGGGGATCCAAAAATAAGCTAAAGTAAACCTGTGTCCATTGAGTCTTTCATTTTCCTG
TATATTTCAATACAACCTAAACTCTCAGGCAGGCAAAAGGGACACAGAAATTAAGTCAATAATC
TCCTTTTCCCAGTACATAAGCTCCACTCTTCCCTAGTCCTACCCATTACCATCTCTATATTTTA
ACCCCCCTGGAATAGTAATATTTGCTCCTCTCAAGTTACTTCATACAGTAAGGCAGCTAAATGG
GAAACTGGTCAATGGAGTGGATACATGGTCTCTGACCCATCTTCTATTTAATGAGTGCAGGATA
ATTTCACAAAGATAAAGTTCATTATTTTGAGAAATTCCCCCTTTTGCCAACTTGAAGACCTCTC
TTAAAATGACAGACCTATCATTTCTCGAGATACAGTATGTTAAACTTTGTGGACTAAATATAGA
AACAATCTCAAAATTCTGGTTGTGGCAATGCCTGTCATTGATGCCCTGGGATCTAGAACCACAG
GGAACCCATTCCAGAATATTTCCATAAAGGGATTACATGGTTGCAAAATATATAACAGACAGCT
CTGCTGGCTTCAGCCTTATTCCCACCTGGAGCTCCGATTTCTGTAGGAATCTAGAACAGCCTCA
TCTGCTTCTCTAGTAACTCACAGCTACTAAGTCTGCACATTCTGTAGCTCCCACTCCTCACACC
TGAGGAAACTCACCTACTGGAACTCCCCCTCTGTGCTCTTCTTGGACTTCCCAACTTACAGACG
CTAGTGACTATTGGCTTGTCCATGAACTGAACACGTTCGGATGAGTGTCCAACACGATTAAATG
TTTCCAGTACTCAGACCTGAACACTCAAGAAACTCTTGCCGTTTGTTTCTATTCCTGTCTCTGA
CCGGGTATCATTAAACAGAACCAAACCTAAGAACAGTAGTAGCCAAAATTGAAAAGTATTCATA
TTTCTATTAAGGTCAACATGCATAAACAAATAAAAATGCAAATACTTGACAGTTCGGTTTAAGA
CAAGACATTGAAGCCTACACTGAACTCTTTAGTTAAAACCTCAGTCCCAGGAGTGAGTATTAAG
TTTCCCCTGCTTGAAGGGGAACATTTCTGGTTAGTAGTAGCCATGCAATACTATTCTACTGGCC
ATATTCTACTGGCAATGCAGAAAAGCAAGACTTGGCAGAGAATTCACTTGTTCCTAGGTTCAAT
TTGTTCATATGAGGCCATATCCAAACAGTGGTACCAGTGTCCTGGGTAAGCTGGAATGCATTTG
AATGGTTAACAGATCATGGGAGATGTGCTTAGAACTCCCCCTGCCAAAGCAAACAATGACAGCA
ATAATGATAAAAGTCTCAAAGTTCCCACTGAAGGTTCCTCCTTTGTGTAGCAATCCTAGGCGAT
TGGAGCCCTTTTTATTAGTTTCAAACGGTCACCAACTACAAGACATGAAATCTTGAATTCTGCA
TGTGGCGAGGCCTCTGGCGTTCTGAATATTGGAAAGTCAGGGCGTTGGAGATCATGGATGGCCT
CAAGTGTTGCTGCATCCACTGGTTAAGGAGGTTACTGTCCACTTCACTAACTGGGTCCTTTTGG
CTCTGAACTGACAAGTTACAAATGCAGCTGCCTGTTTTTCATTCCATCTAACCCTTGATTTGGC
TGATGCCAAGAGTTTCAAGAATGAAGAAGTAATACGAGGAGAAAAGAGGGATTTCGTACATGAG
GGTTGACTGATCATTCATTGACTTGTGAAAATCAAAAACCAAGTTTATGGTAGAAAGTCATCCC
GGTAAGGACAGGAAAAGAAACCTTAGAAATGCTTTAAAAATGGGAAAATCCTTTTCTACAGATC
CACATCCGTATGTATTTGAAGAGGTGGAAGGAATTGGTTGAGTGGTCAATCTTTTACCTGAGCA
GGAAGCATTTCCCCTTCTCATACTGACTTGAAAAGTTACCAAATGTATTTCCGATGTAAACTGC
TTTGGGCATTGAGCAGAGTACATTTCTCTTTTCACTTAAATTGGATAGGGAGATGGGGCTGACA
AAACAGAAGGAACAATGAACTTACCATTAACCAAATGAAAACAAAGACTAGAAAGGTTCTTGTT
GCTTATCTTATTTCCCAGATATCCACCTGTTTTTCACCTTCCTTTTGCTGTTTTGACCCCCACC
TCCCTGCTCCGTTCTCGGAAAGCACCCGTGATCCCAGGCAGAATGGCATCGGCCGACTTCACAC
ATCACTGCAACTGCTACACGTCAGTGTTAAAGAGTTTCGATTTTAATAAAGAGAATTCATTCTC
AACATTAAATGAGCACTGTTCCACTTCTAAGGCTGATGTGAACGGAAAACAGTCGGTTATTGCT
TCCAGAGTTCAGCCGGTGCAGCCAATACAAGACAGAATCCAGGCAAAACCCACGGCAGCCACAG
CAGTTAGAGCACCAGTCTTATCCCTCCCAACAGTTTATACAAATGGAAAACCCATCTCCCAAAG
GGCTAGCCTGTTGTCAAGCAACTTAACGTCTATACATGTTCAAATATATCCAGAGGACATGATA
TTACTGTGTTGAATGGCAAAAACTTAATTTTTTACATGTTAAGACTAAAAAAAAAAAAAACGAA
CTGGAAGGATTTCATGGTATGTTCTGCAGATATATTGCTTTGTCAAATACAAAAAAGAAAAAAT
TCACAATGCCAAACCAAGAGTACTTATATTCAGTATTAAAAAACAAAACCCTGCAATATTTATT
TTCTAATCCCTAGATCTTTTTAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_017592780 ⟹ XP_017448269

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	4	49,369,246 - 49,388,156 (+)	NCBI

Sequence:

show sequence

GTCGGGGGAGGAGATGCGAGGAGAAGCCTGGGGCGATGGAGACACAGAGACATCAGCAGAAGTT
TCTCACCTTGGAAAGCGAGGGACGCTCCCGCATCTCCAGCACGTACTCACCTCTGCGCGAGTGG
ACCTTAGGCTACTTTCTCCACCGCATCTTGCCTAGGGGACTGCCGATTGTCTCTGTCCTTGCTG
ACCTTTTTAATGTTACCTTCCAGGGGAAAGAGGGCAAGGAACAACTGGGTGCTAGGAAACTGAC
CCCAGGCCCTGCGGGCCTCTGGAGAGAGGAGACAGGAGAGGAGTGACTGGGGCTGGGGGCCTCC
ATGCACGGGCCATGGACAGAGCGGCGCTCCTGGCCCTGCCCAGCTTGTGTGCGCTGTGGGCAGC
CGTGCTGTCGCTGCTCCCCTGCGGAACCCAGGGCAACTGGATGTGGTTGGGCATCGCCTCCTTC
GGGGTACCGGAGAAGCTGGGCTGCTCCGGCTTGCCGCTGAACAGCCGCCAGAAGGAGCTGTGCA
AGAGGAAACCGTACCTGCTGCCTAGCATCCGCGAGGGCGCCAGGCTGGGCATTCAGGAGTGCAG
AAGCCAGTTCCGACACGAGAGGTGGAACTGTATGGTCGCCACTGCCACCTCCACCCAGCTCGCT
ACAGCTCCCCTCTTTGGCTATGAACTGAGTAGCGGCACCAAGGAGACAGCATTCATTTATGCCA
TCATGGCTGCAGGCCTGGTGCACTCTGTAACCAGGTCATGCAGTGCAGGCAACATGACCGAGTG
TTCCTGTGACACCACCTTGCAGAACAGTGGCTCAGCGAGTGAAGGCTGGCACTGGGGTGGATGC
TCTGATGATGTCCAGTACGGCATGTGGTTCAGCAGAAAGTTTCTAGACTTACCCGTCAGAAACA
CCACAGAAAAAGAAAGCAAAGTCCTGCTAGCCATGAATCTACACAACAACGAGGCAGGGCGGCA
GGCTGTCGCCAAGTTAATGTCTGTGGACTGCCGCTGCCATGGTGTTTCCGGCTCCTGTGCTGTG
AAAACCTGCTGGAAAACTATGTCTTCTTTTGAAAAGATTGGGTATTTTTTAAAGGATAAATATG
AAAACAGCATCCAGATCTCAGACAAAACCAAGAGGAAGATGCGCAGGAGAGAAAAAGACCAGAG
GCAGACACCCATTCTCAAGGATGACTTGCTATACGTCCATAAGTCTCCCAACTACTGCGTGGAG
AACAAGAAACTGGGTATTCCTGGGACCCAGGGCAGAGAGTGCAACCGTACGTCAGGAGGCGCGG
ATGGCTGTAACCTCCTCTGCTGTGGCCGAGGCTACAACACCCACGTAGTCAGGCACGTGGAGAG
GTGTGAGTGTAAGTTTATCTGGTGCTGTTACGTCCGCTGCAGGAGGTGTGAAAGCATGACCGAT
GTCCACACTTATATCCACCTGTTTTTCACCTTCCTTTTGCTGTTTTGACCCCCACCTCCCTGCT
CCGTTCTCGGAAAGCACCCGTGATCCCAGGCAGAATGGCATCGGCCGACTTCACACATCACTGC
AACTGCTACACGTCAGTGTTAAAGAGTTTCGATTTTAATAAAGAGAATTCATTCTCAACATTAA
ATGAGCACTGTTCCACTTCTAAGGCTGATGTGAACGGAAAACAGTCGGTTATTGCTTCCAGAGT
TCAGCCGGTGCAGCCAATACAAGACAGAATCCAGGCAAAACCCACGGCAGCCACAGCAGTTAGA
GCACCAGTCTTATCCCTCCCAACAGTTTATACAAATGGAAAACCCATCTCCCAAAGGGCTAGCC
TGTTGTCAAGCAACTTAACGTCTATACATGTTCAAATATATCCAGAGGACATGATATTACTGTG
TTGAATGGCAAAAACTTAATTTTTTACATGTTAAGACTAAAAAAAAAAAAAACGAACTGGAAGG
ATTTCATGGTATGTTCTGCAGATATATTGCTTTGTCAAATACAAAAAAGAAAAAATTCACAATG
CCAAACCAAGAGTACTTATATTCAGTATTAAAAAACAAAACCCTGCAATATTTATTTTCTAATC
CCTAGATCTTTTTAAAAAAAAAAAA

hide sequence

Protein Sequences


Protein RefSeqs	NP_001102693	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDM15149	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:	NP_001102693 ⟸ NM_001109223
- Peptide Label:	precursor
- UniProtKB:	D4A3K6 (UniProtKB/TrEMBL)
- Sequence:	show sequence MDRAALLALPSLCALWAAVLSLLPCGTQGNWMWLGIASFGVPEKLGCSGLPLNSRQKELCKRKP YLLPSIREGARLGIQECRSQFRHERWNCMVATATSTQLATAPLFGYELSSGTKETAFIYAIMAA GLVHSVTRSCSAGNMTECSCDTTLQNSGSASEGWHWGGCSDDVQYGMWFSRKFLDLPVRNTTEK ESKVLLAMNLHNNEAGRQAVAKLMSVDCRCHGVSGSCAVKTCWKTMSSFEKIGYFLKDKYENSI QISDKTKRKMRRREKDQRQTPILKDDLLYVHKSPNYCVENKKLGIPGTQGRECNRTSGGADGCN LLCCGRGYNTHVVRHVERCECKFIWCCYVRCRRCESMTDVHTCK hide sequence

RefSeq Acc Id:

XP_006236205 ⟸ XM_006236143

- Peptide Label:

isoform X2

- Sequence:

show sequence

MDRAALLALPSLCALWAAVLSLLPCGTQGNWMWLGIASFGVPEKLGCSGLPLNSRQKELCKRKP
YLLPSIREGARLGIQECRSQFRHERWNCMVATATSTQLATAPLFGYELSSGTKETAFIYAIMAA
GLVHSVTRSCSAGNMTECSCDTTLQNSGSASEGWHWGGCSDDVQYGMWFSRKFLDLPVRNTTEK
ESKVLLAMNLHNNEAGRQAVAKLMSVDCRCHGVSGSCAVKTCWKTMSSFEKIGYFLKDKYENSI
QISDKTKRKMRRREKDQRQTPILKDDLLYVHKSPNYCVENKKLGIPGTQGRECNRTSGGADGCN
LLCCGRGYNTHVVRHVERCECKFIWCCYVRCRRCESMTDVHTWLTVGLPKTR

hide sequence

RefSeq Acc Id:

XP_017448269 ⟸ XM_017592780

- Peptide Label:

isoform X1

- Sequence:

show sequence

MDRAALLALPSLCALWAAVLSLLPCGTQGNWMWLGIASFGVPEKLGCSGLPLNSRQKELCKRKP
YLLPSIREGARLGIQECRSQFRHERWNCMVATATSTQLATAPLFGYELSSGTKETAFIYAIMAA
GLVHSVTRSCSAGNMTECSCDTTLQNSGSASEGWHWGGCSDDVQYGMWFSRKFLDLPVRNTTEK
ESKVLLAMNLHNNEAGRQAVAKLMSVDCRCHGVSGSCAVKTCWKTMSSFEKIGYFLKDKYENSI
QISDKTKRKMRRREKDQRQTPILKDDLLYVHKSPNYCVENKKLGIPGTQGRECNRTSGGADGCN
LLCCGRGYNTHVVRHVERCECKFIWCCYVRCRRCESMTDVHTYIHLFFTFLLLF

hide sequence

RefSeq Acc Id:

ENSRNOP00000007822 ⟸ ENSRNOT00000007822

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13692899

Promoter ID:

EPDNEW_R3424

Type:

single initiation site

Name:

Wnt16_1

Description:

Wnt family member 16

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	4	49,369,300 - 49,369,360	EPDNEW

Strain Variation

Strain Sequence Variants (Rnor 6.0)

ACI/EurMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

ACI/EurMcwi (RGD)

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CSV

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

ACI/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

BBDP/Wor (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

BN/SsN (MCW)

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CSV

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Buf/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

COP/CrCrl (MCW & UW)

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CSV

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob) University of Wisconsin (Dr. James Shull)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Charles River Laboratories
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)

F344/NCrl (RGD)

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CSV

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

F344/NRrrc (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

FHH/EurMcwi (MCW)

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CSV

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

FHH/EurMcwi (RGD)

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CSV

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

FHL/EurMcwi (MCW)

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CSV

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

FHL/EurMcwi (RGD)

Visual

CSV

TAB

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

GH/OmrMcwi (MCW)

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CSV

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

GK/Ox (RGD)

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CSV

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LE/Stm (RGD)

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CSV

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LEW/Crl (RGD)

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CSV

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LEW/NCrlBR (RGD)

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CSV

TAB

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LH/MavRrrc (RGD)

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CSV

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LL/MavRrrc (RGD)

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CSV

TAB

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LN/MavRrrc (RGD)

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CSV

TAB

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

M520/N (MCW)

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CSV

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

MHS/Gib (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

MNS/Gib (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

MR/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

SBH/Ygl (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	SBH/Ygl sequenced by MCW

SBH/Ygl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SBN/Ygl (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	SBN/Ygl sequenced by MCW

SBN/Ygl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SHR/NHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SHRSP/Gcrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SR/JrHsd (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Harlan Laboratories
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

SR/JrHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SS/Jr (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SS/JrHsdMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

SS/JrHsdMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WAG/Rij (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/Gcrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

WKY/NCrl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/NHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WN/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1562253	AgrOrtholog
Ensembl Genes	ENSRNOG00000005781	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein	ENSRNOP00000007822	ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000007822	ENTREZGENE, UniProtKB/TrEMBL
Gene3D-CATH	3.30.2460.20	UniProtKB/TrEMBL
InterPro	Wnt16	UniProtKB/TrEMBL
	Wnt_C	UniProtKB/TrEMBL
	Wnt_CS	UniProtKB/TrEMBL
	Wnt_SF	UniProtKB/TrEMBL
KEGG Report	rno:500047	UniProtKB/TrEMBL
NCBI Gene	500047	ENTREZGENE
PANTHER	Wnt	UniProtKB/TrEMBL
Pfam	wnt	UniProtKB/TrEMBL
PhenoGen	Wnt16	PhenoGen
PRINTS	WNT16PROTEIN	UniProtKB/TrEMBL
	WNTPROTEIN	UniProtKB/TrEMBL
PROSITE	WNT1	UniProtKB/TrEMBL
SMART	WNT1	UniProtKB/TrEMBL
UniProt	D4A3K6	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2017-03-29	Wnt16	Wnt family member 16	Wnt16	wingless-type MMTV integration site family, member 16	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-11-14	Wnt16	wingless-type MMTV integration site family, member 16	Wnt16	wingless-related MMTV integration site 16	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-02-09	Wnt16	wingless-related MMTV integration site 16			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

RGD Manual Annotations

Imported Annotations - KEGG (archival)