Hmgb1-ps5 (high-mobility group box 1, pseudogene 5) - Rat Genome Database

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Gene: Hmgb1-ps5 (high-mobility group box 1, pseudogene 5) Rattus norvegicus
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Symbol: Hmgb1-ps5
Name: high-mobility group box 1, pseudogene 5
RGD ID: 1565435
Description:
Type: pseudo
RefSeq Status: MODEL
Previously known as: LOC502743; RGD1565435; similar to Hmgb1 protein
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8462,772,731 - 62,773,791 (-)NCBIGRCr8
mRatBN7.2461,805,964 - 61,806,669 (-)NCBImRatBN7.2mRatBN7.2
Rnor_6.0460,547,383 - 60,548,089 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0460,285,651 - 60,286,356 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4460,405,128 - 60,405,766 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera456,880,899 - 56,881,605 (-)NCBICelera
Cytogenetic Map4q22NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


PMID:21431875  



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Variants in Hmgb1-ps5
3 total Variants

1 to 10 of 49 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1358352Srcrt3Stress Responsive Cort QTL 32.29blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)438465774146803430Rat
1549843Bw53Body weight QTL 530.0001body mass (VT:0001259)body weight gain (CMO:0000420)461697658103194791Rat
61445Strs3Sensitivity to stroke QTL 33cerebrum integrity trait (VT:0010549)post-insult time to onset of cerebrovascular lesion (CMO:0002343)44043338885433388Rat
6893678Bw108Body weight QTL 1082.60.006body mass (VT:0001259)body weight (CMO:0000012)44345797688457976Rat
10755501Bp390Blood pressure QTL 3902.5arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)426775591168368347Rat
1358363Sradr3Stress Responsive Adrenal Weight QTL 36.19adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)457486946102486946Rat
61336Bp21Blood pressure QTL 214.6arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)45711470578881294Rat
1549839Bw52Body weight QTL 520.0001body mass (VT:0001259)body weight gain (CMO:0000420)461697658115089733Rat
2313401Anxrr27Anxiety related response QTL 27aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)41793350862933508Rat
6909128Pancm4Pancreatic morphology QTL 411.35pancreas mass (VT:0010144)pancreas wet weight (CMO:0000626)42690728575585128Rat

1 to 10 of 49 rows





GenBank Nucleotide JAXUCZ010000004 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles



Database
Acc Id
Source(s)
BioCyc Gene G2FUF-45286 BioCyc
NCBI Gene 502743 ENTREZGENE
PhenoGen Hmgb1-ps5 PhenoGen


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-10 Hmgb1-ps5  high-mobility group box 1, pseudogene 5  RGD1565435  similar to Hmgb1 protein  Symbol and Name Changed 1299863 APPROVED
2008-04-30 RGD1565435  similar to Hmgb1 protein   RGD1565435_predicted  similar to Hmgb1 protein (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-07 RGD1565435_predicted  similar to Hmgb1 protein (predicted)  LOC502743  similar to Hmgb1 protein  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC502743  similar to Hmgb1 protein      Symbol and Name status set to provisional 70820 PROVISIONAL