Pia2 QTL Report (Rattus norvegicus) - Rat Genome Database

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QTL Registration

QTL: Pia2 (Pristane induced arthritis QTL 2) Rattus norvegicus

Symbol: Pia2
Name: Pristane induced arthritis QTL 2
RGD ID: 61412
Trait: joint integrity trait   (VT:0010548)    
Measurement Type: post-insult time to onset of experimental arthritis   (CMO:0001450)    
LOD Score: 3.9
P Value: Not Available
Variance: Not Available
Inheritance Type: dominant
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2421,333,343 - 62,278,020RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.0418,222,187 - 61,039,065RGD_MAPPER_PIPELINERnor6.0
Rnor_5.0418,184,531 - 60,769,885RGDRnor5.0
RGSC_v3.4417,617,956 - 60,974,511RGDRGSC3.4
RGSC_v3.1417,617,956 - 61,250,641RGD
Cross Type: F2
Strains Crossed: DA E3 
JBrowse: View Region in Genome Browser (JBrowse)
Model



Disease Annotations     Click to see Annotation Detail View

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
Experimental Data Annotations     Click to see Annotation Detail View

Experimental Condition
pristane  (IDA)

Measurement Method

Vertebrate Trait

Rat Strain
DA  (IEA)
E3  (IEA)

References

References - curated
# Reference Title Reference Citation
1. Evidence for common autoimmune disease genes controlling onset, severity, and chronicity based on experimental models for multiple sclerosis and rheumatoid arthritis. Bergsteinsdottir K, etal., J Immunol 2000 Feb 1;164(3):1564-8
2. Quest for arthritis-causative genetic factors in the rat. Joe B Physiol Genomics. 2006 Oct 3;27(1):1-11. Epub 2006 Jun 27.
3. Localization of quantitative trait loci regulating adjuvant-induced arthritis in rats: evidence for genetic factors common to multiple autoimmune diseases. Kawahito Y, etal., J Immunol 1998 Oct 15;161(8):4411-9
4. Genetic control of arthritis onset, severity and chronicity in a model for rheumatoid arthritis in rats. Vingsbo-Lundberg C, etal., Nat Genet 1998 Dec;20(4):401-4
5. The complexity in hunting for candidate genes within QTL that determine susceptibility to arthritis in rats. Xiong Q, etal., Crit Rev Immunol. 2008;28(2):127-57.
6. Genetic and molecular basis of quantitative trait loci of arthritis in rat: genes and polymorphisms. Xiong Q, etal., J Immunol. 2008 Jul 15;181(2):859-64.
Related QTLs

Related QTL Description Reference
Aia2 maps to same region RGD:61035
Eae11 maps to same region RGD:61031


Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
3657Sema3asemaphorin 3A42128239821754834Rat
41320971LOC120102218uncharacterized LOC12010221842209288522119273Rat
727939Sema3dsemaphorin 3D42231676922505930Rat
40955874LOC120102571U6 spliceosomal RNA42296828522968392Rat
41054814Envl-ps4MLV-related proviral Env polyprotein-like, pseudogene 442298847722990225Rat
41303418LOC120102627small nucleolar RNA SNORA3142308406723084203Rat
7624497LOC102553320uncharacterized LOC10255332042359296423661292Rat
1562636Ppp1r3bl1protein phosphatase 1, regulatory subunit 3B like 142376587423768883Rat
1564798Tmem183a-ps1transmembrane protein 183A, pseudogene 142389715723898281Rat
6492128Rps6-ps11ribosomal protein S6, pseudogene 1142409335324096338Rat
9197484LOC103692044mitochondrial import inner membrane translocase subunit Tim8 A pseudogene42428942924289895Rat
2744Grm3glutamate metabotropic receptor 342436485424643972Rat
1563349Elapor2endosome-lysosome associated apoptosis and autophagy regulator family member 242461316324805729Rat
2325362Mir879microRNA 87942472445524724530Rat
11462374LOC108350658uncharacterized LOC10835065842477957124794265Rat
7536117LOC102555663uncharacterized LOC10255566342480591224807670Rat
70966Dmtf1cyclin D binding myb-like transcription factor 142490993724950786Rat
1562351Tmem243transmembrane protein 24342495079124968642Rat
41334218LOC120102603U6 spliceosomal RNA42495272424952824Rat
41118809LOC120102219uncharacterized LOC12010221942499381825003812Rat
41212670Eif3k-ps1eukaryotic translation initiation factor 3, subunit K, pseudogene 142501206425012685Rat
70908Crotcarnitine O-octanoyltransferase42506827025133111Rat
620248Abcb4ATP binding cassette subfamily B member 442515099825209489Rat
41286244LOC120102221uncharacterized LOC12010222142517166925175960Rat
41047811C1h11orf98-ps2similar to human chromosome 11 open reading frame 98, pseudogene 242517472725175091Rat
3318Abcb1bATP-binding cassette, sub-family B member 1B42524276125325194Rat
41222673LOC120102222uncharacterized LOC12010222242524540025250299Rat
619951Abcb1aATP binding cassette subfamily B member 1A42535746725529941Rat
1587590Rundc3bRUN domain containing 3B42546254325599477Rat
1308774Slc25a40solute carrier family 25, member 4042563144725676454Rat
1305854Dbf4DBF4-CDC7 kinase regulatory subunit42567657025701152Rat
1585016Adam22ADAM metallopeptidase domain 2242571605525970932Rat
41165065Trnap-agg72transfer RNA proline (anticodon AGG) 7242578050525780585Rat
41303543LOC120102223uncharacterized LOC12010222342582169625835920Rat
1584485Srisorcin42597349325997879Rat
1560331Steap4STEAP4 metalloreductase42607718226099859Rat
41240640LOC120102760U2 spliceosomal RNA42637529726375438Rat
41340251Ranbp1-ps1RAN binding protein 1, pseudogene 142646895426472445Rat
1589640Zfp804bzinc finger protein 804B42660851027144717Rat
41129509Rnu2-34RNA, U2 small nuclear 3442661716926617247Rat
41258698LOC120102775U4 spliceosomal RNA42661813426618285Rat
1564345Tex47testis expressed 4742664409826647393Rat
1589639Cd2ap-ps1CD2-associated protein, pseudogene 142719800627200492Rat
7734714LOC102549955uncharacterized LOC10254995542721068227262917Rat
41114928Ewsr1-ps6EWS RNA-binding protein 642752623327528198Rat
1589637Psme2-ps2proteasome activator subunit 2, pseudogene 242772478627725601Rat
2323949Psma2-ps1proteasome 20S subunit alpha 2, pseudogene 142783744727838144Rat
1561754Hmgb3l2high mobility group box 3 like 242789164327892122Rat
1311543Steap1STEAP family member 142827697228287484Rat
1307050Steap2STEAP2 metalloreductase42834776928368177Rat
6496360Cfap69cilia and flagella associated protein 6942837960428452562Rat
41220038Fam237bfamily with sequence similarity 237 member B42845785128458270Rat
1305878Gtpbp10GTP binding protein 1042847685728494375Rat
1561053Cldn12claudin 1242852265928533647Rat
9118001Pttg1ip2PTTG1IP family member 242856106328585400Rat
11517003LOC108350663uncharacterized LOC10835066342856196828575524Rat
1305544Cdk14cyclin-dependent kinase 1442866641629258865Rat
40946680Rps15a-ps6ribosomal protein S15a, pseudogene 642882455328832585Rat
7573585Speer4cl3spermatogenesis associated glutamate (E)-rich protein 4C like 342906776129096268Rat
61916Fzd1frizzled class receptor 142931030329314701Rat
41019115LOC120102226uncharacterized LOC12010222642933283229340185Rat
41390098LOC120102572U6 spliceosomal RNA42944279329442899Rat
41107770LOC120102227uncharacterized LOC12010222742958142329591564Rat
2324789Mterf1-ps1mitochondrial transcription termination factor 1, pseudogene 142988661129887781Rat
2323518Mterf1-ps2mitochondrial transcription termination factor 1, pseudogene 242991257629913741Rat
2481Cyp51cytochrome P450, family 5143003695630055410Rat
620833Akap9A-kinase anchoring protein 943005673830192716Rat
621318Mterf1mitochondrial transcription termination factor 143022634530233402Rat
1562785Lrrd1leucine-rich repeats and death domain containing 143026314730293119Rat
1305929Krit1KRIT1, ankyrin repeat containing43029920330333366Rat
1597088Ankib1ankyrin repeat and IBR domain containing 143033367830457781Rat
7727723Dnd1-ps2DND microRNA-mediated repression inhibitor 1, pseudogene 243041499030418462Rat
1306626Tmbim7transmembrane BAX inhibitor motif containing 743046665130499565Rat
1562004Gatad1GATA zinc finger domain containing 143050753030519107Rat
1559939Pex1peroxisomal biogenesis factor 143051995030558953Rat
1310794Rbm48RNA binding motif protein 4843055906330569409Rat
15884451700109H08RiklRIKEN cDNA 1700109H08 gene like43056904530589503Rat
1306302Fam133bfamily with sequence similarity 133, member B43058964630616291Rat
621121Cdk6cyclin-dependent kinase 643063765030829688Rat
11356515LOC108350668uncharacterized LOC10835066843090631330909925Rat
1562992Hnrnpa1-ps33heterogeneous nuclear ribonucleoprotein A1, pseudogene 3343093491530936057Rat
1560872RGD1560872similar to interferon induced transmembrane protein 2 (1-8D)43096084530961278Rat
1565361Golga3-ps1golgin A3, pseudogene 143108092331085695Rat
6494620Zc3hav1-ps7zinc finger CCCH-type containing, antiviral 1, pseudogene 743108849231090178Rat
2323113Bcl2l2-ps2Bcl2-like 2, pseudogene 243114616431148432Rat
1563091Samd9sterile alpha motif domain containing 943116463931184278Rat
7747029Samd9l-ps2sterile alpha motif domain containing 9-like, pseudogene 243120032731216722Rat
9213284Samd9l-ps1sterile alpha motif domain containing 9-like, pseudogene 143126795031333461Rat
41041657Samd9l2sterile alpha motif domain containing 9 like 243132004031333472Rat
1562531Samd9lsterile alpha motif domain containing 9 like43136205431376412Rat
1305697Hepacam2HEPACAM family member 243144619531480859Rat
1304751Vps50VPS50 subunit of EARP/GARPII complex43148442431585617Rat
621001Calcrcalcitonin receptor43166127031736392Rat
2314881Mir653microRNA 65343169271431692810Rat
2314886Mir489microRNA 48943169335531693460Rat
628629Tfpi2tissue factor pathway inhibitor 243198178631986707Rat
1595475Gngt1G protein subunit gamma transducin 143200626732009252Rat
621515Gng11G protein subunit gamma 1143202300332028443Rat
11407309LOC108350669uncharacterized LOC10835066943205605032112584Rat
2203Bet1Bet1 golgi vesicular membrane trafficking protein43211623232126592Rat
7661902LOC102557375uncharacterized LOC10255737543245489832457445Rat
1561836Chchd2l2-ps1coiled-coil-helix-coiled-coil-helix domain containing protein 2-like 2, pseudogene 143251175332512295Rat
621351Col1a2collagen type I alpha 2 chain43256393832598868Rat
7572472LOC102552043uncharacterized LOC10255204343264282332644911Rat
1596912Casd1CAS1 domain containing 143265919632739228Rat
1303201Sgcesarcoglycan, epsilon43277147732842238Rat
1595574Peg10paternally expressed 1043284244132855639Rat
40975034LOC120102559U4 spliceosomal RNA43292226032922342Rat
1559912Ckap2-ps1cytoskeleton-associated protein 2, pseudogene 143295899232961061Rat
632280Ppp1r9aprotein phosphatase 1, regulatory subunit 9A43297050133292360Rat
620062Pon1paraoxonase 143329473733325759Rat
1302965Pon3paraoxonase 343335698333383681Rat
1309954Pon2paraoxonase 243338970233425186Rat
1563114Asb4ankyrin repeat and SOCS box-containing 443350699233544630Rat
1591728Vil1-ps1villin 1, pseudogene 143357586133580483Rat
7584396LOC102552448uncharacterized LOC10255244843358265233589860Rat
69061Pdk4pyruvate dehydrogenase kinase 443359179633601798Rat
11435887Rps29-ps20ribosomal protein S29, pseudogene 2043366405033666091Rat
2512Dync1i1dynein cytoplasmic 1 intermediate chain 143385259734166159Rat
1565889Slc25a13solute carrier family 25 member 1343417922434361912Rat
41148263LOC120102562U6 spliceosomal RNA43421018434210290Rat
9376829LOC103692067protein LLP homolog pseudogene43429933134305057Rat
11431277Rpl31l14ribosomal protein L31 like 1443430256234310161Rat
7657264LOC102554854uncharacterized LOC10255485443441491134438788Rat
9229365LOC103692052uncharacterized LOC10369205243443911634447138Rat
41375555LOC120102231uncharacterized LOC12010223143459265234594248Rat
1590628Sem1SEM1 26S proteasome subunit43467184834692005Rat
41211262LOC120102776U4 spliceosomal RNA43469280334692885Rat
1566237Rpl35-ps9ribosomal protein L35, pseudogene 943487396834874422Rat
6488535LOC100912227uncharacterized LOC10091222743494327134993044Rat
1561539Dlx6distal-less homeobox 643498426434989926Rat
2506Dlx5distal-less homeobox 543499913935003504Rat
1305143Sdhaf3succinate dehydrogenase complex assembly factor 343510053335160740Rat
1589400Rps25-ps4ribosomal protein S25, pseudogene 443527172035272156Rat
11453897LOC108350853uncharacterized LOC10835085343529687035304056Rat
3807Tac1tachykinin, precursor 143567918335687180Rat
41397044Set-ps6Set nuclear proto-oncogene, pseudogene 643574428035747371Rat
2162Asnsasparagine synthetase (glutamine-hydrolyzing)43578499535803474Rat
9388809Polr1d-ps1RNA polymerase I and III subunit D, pseudogene 143592757835928571Rat
621105C1galt1core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase, 143593098135966100Rat
40976402LOC120102629small nucleolar RNA SNORA3/SNORA45 family43596972735969848Rat
7526246LOC102550307uncharacterized LOC10255030743601868036040591Rat
1564680Col28a1collagen type XXVIII alpha 1 chain43606998036223128Rat
1308432Miosmeiosis regulator for oocyte development43626341936289546Rat
1306810Rpa3replication protein A343630464936307755Rat
1563612Glcci1glucocorticoid induced 143630795636635614Rat
621465Ica1islet cell autoantigen 143665647536804705Rat
7715339LOC102550643uncharacterized LOC10255064343678088436787735Rat
3218Nxph1neurexophilin 143699806837311135Rat
41319059LOC120102653small nucleolar RNA SNORA4843748469037484833Rat
1585861Nsa2-ps9NSA2 ribosome biogenesis factor, pseudogene 943756118837561974Rat
1565400Actc1-ps1actin, alpha, cardiac muscle 1, pseudogene 143762082037622087Rat
3600Rps4x-ps9ribosomal protein S4, X-linked, pseudogene 943775837337759289Rat
1560448Yae1l1YAE1 maturation factor of ABCE1 like 143791783737918511Rat
2322347Tomm20-ps2translocase of outer mitochondrial membrane 20, pseudogene 243801322738013802Rat
11516558LOC10835085540S ribosomal protein S23 pseudogene43826319438263628Rat
1585825Hmgn1l1high mobility group nucleosomal binding domain 1 like 143860485638606026Rat
40971411LOC120102154uncharacterized LOC12010215443864163538646263Rat
41248065LOC120102234uncharacterized LOC12010223443890194838907419Rat
2322154Psma6-ps3proteasome 20S subunit alpha 6, pseudogene 343919157039192321Rat
1562387Gtpbp4-ps3GTP binding protein 4, pseudogene 343939107939425066Rat
7596691LOC102547989uncharacterized LOC10254798943959860439678420Rat
40982246LOC120102694small nucleolar RNA SNORA1743973394139734060Rat
1584730Stmnl-ps2stathmin like, pseudogene 243976968439770132Rat
1584719Ndufa4Ndufa4, mitochondrial complex associated44000221640009384Rat
1563764Phf14PHD finger protein 1444000969140195877Rat
41002968LOC120102235uncharacterized LOC12010223544011938740123944Rat
41140158LOC120102687small nucleolar RNA SNORA1744030905740309173Rat
1566201Thsd7athrombospondin type 1 domain containing 7A44046112440899345Rat
7641224Rps2-ps40ribosomal protein S2, pseudogene 4044068219240683121Rat
9330178LOC10369207460 kDa heat shock protein, mitochondrial pseudogene44072136940732042Rat
11363596LOC108350856uncharacterized LOC10835085644093701340945223Rat
1587202Pkm-ps19pyruvate kinase M1/2, pseudogene 1944115613841277227Rat
1303037Tmem106btransmembrane protein 106B44132812541347315Rat
1561223Vwdevon Willebrand factor D and EGF domains44145357341525421Rat
1583532Gnpnat1-ps1glucosamine-phosphate N-acetyltransferase 1, pseudogene 144154887241549774Rat
1564521Tas2r7ltaste receptor type 2 member 7-like44156953641570447Rat
7609534LOC102548489uncharacterized LOC10254848944169446041701116Rat
6493676LOC100911252peptidyl-prolyl cis-trans isomerase A-like44182887341829619Rat
1307778Tmem168transmembrane protein 16844183062341858763Rat
41264909LOC120102634small nucleolar RNA SNORA4444186943541869561Rat
7545679Lyrm4-ps1LYR motif containing 4, pseudogene 144187003941878699Rat
1588441Bmt2base methyltransferase of 25S rRNA 2 homolog44188163041945472Rat
41065803LOC120102155uncharacterized LOC12010215544198883241995216Rat
71011Gpr85G protein-coupled receptor 8544210013842109584Rat
2322826Smim30l1small integral membrane protein 30 like 144214169642143340Rat
2323857Plscr2-ps1phospholipid scramblase 2, pseudogene 144223615742358953Rat
41230048LOC120102706small nucleolar RNA SNORA1744239883242398962Rat
1597981Hnrnpa1-ps53heterogeneous nuclear ribonucleoprotein A1, pseudogene 5344246088042461983Rat
41017590Rnu6-210RNA, U6 small nuclear 21044272163142721733Rat
1561312Ppp1r3aprotein phosphatase 1, regulatory subunit 3A44293735342980195Rat
1559697Foxp2forkhead box P244313382743712442Rat
1585845Rbmxl1bRbmx like 1B44395627543957957Rat
1309532MdficMyoD family inhibitor domain containing44397231044052162Rat
41011912LOC120102753U2 spliceosomal RNA44418613544186318Rat
1562178Ak2-ps3adenylate kinase 2, pseudogene 344496660644967403Rat
3846Tfectranscription factor EC44510612945180236Rat
41270777LOC120102238uncharacterized LOC12010223844525441545365272Rat
1566346Testestin LIM domain protein44536530445403829Rat
7512277LOC102550644uncharacterized LOC10255064444546330045616095Rat
620348Cav2caveolin 244561676645624144Rat
2280Cav1caveolin 144564062445673708Rat
9112364LOC103692063uncharacterized LOC10369206344568273545711751Rat
7671121LOC102550745uncharacterized LOC10255074544571182445736550Rat
3082MetMET proto-oncogene, receptor tyrosine kinase44579045645898139Rat
1549770Capza2capping actin protein of muscle Z-line subunit alpha 244597814246014032Rat
1303148ST7suppression of tumorigenicity 744604165546289745Rat
41017039LOC12010244460S ribosomal protein L23a-like44614691746153007Rat
621346Wnt2Wnt family member 244632840846374673Rat
621579Asz1ankyrin repeat, SAM and basic leucine zipper domain containing 144640048546456085Rat
2332CftrCF transmembrane conductance regulator44656126946728759Rat
41373703LOC120102563U6 spliceosomal RNA44675272146752827Rat
628691Cttnbp2cortactin binding protein 244680097546964681Rat
41325296LOC120102241uncharacterized LOC12010224144690628746931844Rat
1566227U2surp-ps1U2 snRNP-associated SURP domain containing, pseudogene 144700588447008963Rat
1308442Lsm8LSM8 homolog, U6 small nuclear RNA associated44730625947312125Rat
1564660Ankrd7ankyrin repeat domain 744731227047336754Rat
1597712Pdia6l1protein disulfide isomerase family A, member 6 like 144760658247607800Rat
11453204LOC108350673uncharacterized LOC10835067344874646548832870Rat
1588440Rpl7al1ribosomal protein L7A like 144899400148996804Rat
41283447LOC120102623small nucleolar RNA SNORA7244956519549565318Rat
2321181Nid2-ps1nidogen 2, pseudogene 144963262849633166Rat
7531073Kcnd2l1potassium voltage-gated channel subfamily D member 2 like 144977514649777251Rat
68393Kcnd2potassium voltage-gated channel subfamily D member 244977581250277746Rat
9383752LOC10369208160S ribosomal protein L3 pseudogene44999112250003764Rat
9374544Sdad1-ps1SDA1 domain containing 1, pseudogene 145000501450017758Rat
1311102Tspan12tetraspanin 1245031376850389246Rat
1310556Ing3inhibitor of growth family, member 345047795450505168Rat
1563491Cped1cadherin-like and PC-esterase domain containing 145051671250789651Rat
1562253Wnt16Wnt family member 1645082096850831380Rat
735193Fam3cFAM3 metabolism regulating signaling molecule C45083992950887276Rat
40966555Rps2-ps30ribosomal protein S2, pseudogene 3045118082051181483Rat
2323280Ddx50-ps1DExD-box helicase 50, pseudogene 145122310151296237Rat
3455Ptprz1protein tyrosine phosphatase, receptor type Z145139731651595220Rat
1310811Aassaminoadipate-semialdehyde synthase45160646151663136Rat
1593790Rps3-ps7ribosomal protein S3, pseudogene 745168221851683038Rat
9348766LOC10369208460S ribosomal protein L27 pseudogene45174224651742683Rat
1560480Fezf1Fez family zinc finger 145176275151766078Rat
1559440Cadps2calcium dependent secretion activator 245178041552309641Rat
1596695Rnf133ring finger protein 13345214058452143357Rat
1595417Rnf148ring finger protein 14845214579852152508Rat
11494192LOC108350675uncharacterized LOC10835067545230586952306706Rat
620735Tas2r118taste receptor, type 2, member 11845244920852450107Rat
61919Slc13a1solute carrier family 13 member 145256917952647126Rat
41390060Thrap3-ps3thyroid hormone receptor associated protein 3, pseudogene 345261899952623801Rat
1591364Impdh2-ps1inosine monophosphate dehydrogenase 2, pseudogene 145273881252740348Rat
4145674IqubIQ motif and ubiquitin domain containing45293176852993795Rat
3155Ndufa5NADH:ubiquinone oxidoreductase subunit A545299732753005685Rat
11519975LOC108350676uncharacterized LOC10835067645301133153070210Rat
727860Asb15ankyrin repeat and SOCS box containing 1545302155353050846Rat
1592092Lmod2leiomodin 245306742853075124Rat
735144WaslWASP like actin nucleation promoting factor45308353653132061Rat
41046683LOC120102245thymosin beta-10-like45316672153167501Rat
1564219Hyal6hyaluronoglucosaminidase 645323811853250783Rat
1303194Hyal4hyaluronidase 445325617953274819Rat
620547Spam1sperm adhesion molecule 145330274553312913Rat
1566275Hyal5hyaluronoglucosaminidase 545334110553412280Rat
41007128LOC120102673small nucleolar RNA SNORA1745338598353386111Rat
1590212Tmem229atransmembrane protein 229A45344028753445286Rat
40982331LOC120102560U4 spliceosomal RNA45344725653447395Rat
41116076LOC120102770small nucleolar RNA U345347260253472711Rat
41340465LOC120102695small nucleolar RNA SNORA1745369658653696709Rat
1590185Suv39h2-ps1SUV39H2 histone lysine methyltransferase, pseudogene 145377885553779842Rat
619848Gpr37G protein-coupled receptor 3745413886054160927Rat
1562696Pot1protection of telomeres 145420533054263137Rat
41278566LOC120102621U7 small nuclear RNA45424986854249928Rat
41203940LOC120102612U7 small nuclear RNA45424994254250003Rat
40965413LOC120102246uncharacterized LOC12010224645426329454267934Rat
41126584Rnu6-321RNA, U6 small nuclear 32145430365054303756Rat
11449079LOC108350678uncharacterized LOC10835067845431932854357983Rat
41236019LOC120102247uncharacterized LOC12010224745443222054444023Rat
1588991Tk1-ps1thymidine kinase 1, pseudogene 145476723154775827Rat
41096447LOC120102705small nucleolar RNA SNORA1745488282354882955Rat
2320107Snx11-ps1sorting nexin 11, pseudogene 145491521154915991Rat
41167571LOC120102158uncharacterized LOC12010215845547681655492390Rat
41153446LOC120102756U2 spliceosomal RNA45579655355796713Rat
619858Grm8glutamate metabotropic receptor 845580576256731690Rat
41002790LOC120102608small nucleolar RNA SNORA73 family45625815156258354Rat
40972881LOC120102759U2 spliceosomal RNA45645195256452095Rat
2314878Mir592microRNA 59245650528056505375Rat
1560157Zfp800zinc finger protein 80045679832656849766Rat
41034677LOC120102248uncharacterized LOC12010224845680319656805686Rat
1587791H3f3cl2H3 histone, family 3C like 245684980056862528Rat
40930852LOC120102657U1 spliceosomal RNA45695629256956455Rat
2319954Gcc1GRIP and coiled-coil domain containing 145703081757042682Rat
621278Arf5ADP-ribosylation factor 545703852157041447Rat
1303047Fscn3fascin actin-bundling protein 345704279757052224Rat
620433Pax4paired box 445705845357065995Rat
631340Snd1staphylococcal nuclease and tudor domain containing 145709520557494501Rat
628724LipogeninLipogenin45735629857357553Rat
1560026Lrrc4leucine rich repeat containing 445743351857437114Rat
41397929LOC120102250uncharacterized LOC12010225045758550557626664Rat
2325456Mir129-1microRNA 129-145762429557624366Rat
3000Lepleptin45766112757675262Rat
1311336Rbm28RNA binding motif protein 2845772294657761935Rat
1559885Prrt4proline-rich transmembrane protein 445776605457777087Rat
1311108Impdh1inosine monophosphate dehydrogenase 145780184257817434Rat
41279683LOC120102707small nucleolar RNA SNORA1745783546757835618Rat
2319900Hilpdahypoxia inducible lipid droplet-associated45787108857874048Rat
1561814Garin1agolgi associated RAB2 interactor 1A45788001957890824Rat
9389926LOC103692085uncharacterized LOC10369208545788614857889290Rat
1564147Garin1bgolgi associated RAB2 interactor 1B45791518457938593Rat
620383Calucalumenin45794908657976589Rat
621033Opn1swopsin 1, short wave sensitive45797731757980457Rat
11403251Trnap-agg6transfer RNA proline (anticodon AGG) 645798962657989697Rat
1564459Ccdc136coiled-coil domain containing 13645799782558027598Rat
1308807Flncfilamin C45803408858061882Rat
621552Atp6v1fATPase H+ transporting V1 subunit F45806766658070628Rat
1561119Kcpkielin cysteine rich BMP regulator45808285658118170Rat
1310447Irf5interferon regulatory factor 545812757758140665Rat
1308938Tnpo3transportin 345814295458220365Rat
7563828LOC102552812uncharacterized LOC10255281245827229058276271Rat
41373976Snrpg-ps6small nuclear ribonucleoprotein polypeptide G, pseudogene 645830406958304945Rat
1560915Tspan33tetraspanin 3345830537858330013Rat
41285462LOC120102481uncharacterized LOC12010248145830681058311531Rat
3726Smosmoothened, frizzled class receptor45834362658373823Rat
41009975LOC120102483uncharacterized LOC12010248345837333558381144Rat
1564895Ahcyl2adenosylhomocysteinase-like 245838129058531061Rat
1588437Strip2striatin interacting protein 245853603458578279Rat
7590867Pgk1-ps1phosphoglycerate kinase 1, pseudogene 145857843058580694Rat
9298384Smkr1small lysine-rich protein 145859536358609149Rat
41058543LOC120102484uncharacterized LOC12010248445863484558638314Rat
1304603Nrf1nuclear respiratory factor 145866493258772328Rat
4888616Mir182microRNA 18245878481858784879Rat
2325582Mir96microRNA 9645878841158788516Rat
2325560Mir183microRNA 18345878861458788723Rat
4888613Mir3553microRNA 355345878861758788722Rat
2319288Ube2hubiquitin-conjugating enzyme E2H45883467458930156Rat
41334655LOC120102640small nucleolar RNA SNORA3245895139358951489Rat
1561099Zc3hc1zinc finger, C3HC-type containing 145898998959011925Rat
1309792Klhdc10kelch domain containing 1045902130059079118Rat
11503662LOC108350685uncharacterized LOC10835068545908451759086860Rat
1309682Tmem209transmembrane protein 20945910294359128636Rat
1559502Ssmem1serine-rich single-pass membrane protein 145912873059139029Rat
1305563Cpa2carboxypeptidase A245916035759183677Rat
41176579LOC120102251uncharacterized LOC12010225145916618959197472Rat
1563619Cpa4carboxypeptidase A445918828459212255Rat
7689603LOC102553416uncharacterized LOC10255341645920892859229667Rat
1303098Cpa5carboxypeptidase A545922975459249503Rat
2388Cpa1carboxypeptidase A145925741759263544Rat
1562034Cep41centrosomal protein 4145927121859312343Rat
1594589Mestmesoderm specific transcript45935444559364919Rat
1566215Copg2COPI coat complex subunit gamma 245936608659501591Rat
1584118Tsga13testis specific, 1345950177359522925Rat
9267310LOC103692110interferon-induced transmembrane protein 2 pseudogene45954898259549845Rat
1306012Klf14KLF transcription factor 1445955401159556933Rat
4888604Mir3556amicroRNA 3556a45965059659650713Rat
2325393Mir29amicroRNA 29a45965060859650695Rat
4888577Mir3587microRNA 358745965096059651022Rat
2325591Mir29b1microRNA 29b-145965098759651067Rat
40935195Trnad-auctransfer RNA aspartic acid (anticodon AUC)45978748459787557Rat
620076Mkln1muskelin 145981591260124047Rat
41397436LOC120102487uncharacterized LOC12010248745983240159845825Rat
41196392LOC120102488uncharacterized LOC12010248845987710159880952Rat
41038068LOC120102486uncharacterized LOC12010248645996954160002431Rat
11406136Vamp5lvesicle-associated membrane protein 5 like45997441259990317Rat
9410961Ppid-ps6peptidylprolyl isomerase D, pseudogene 646007650560077634Rat
621878Podxlpodocalyxin-like46013512460181829Rat
7632355Dppa4-ps8developmental pluripotency-associated 4, pseudogene 846014565860148378Rat
1561636Rpl38l1ribosomal protein L38 like 146029635860296687Rat
1586093Eif1-ps3eukaryotic translation initiation factor 1, pseudogene 346048509460485620Rat
7643646LOC102549088uncharacterized LOC10254908846061944960651830Rat
15974441700012A03RiklRIKEN cDNA 1700012A03 gene like46064478960652324Rat
11485345LOC108350687uncharacterized LOC10835068746069840160709474Rat
1308074Plxna4plexin A446072024661162206Rat
11439332LOC108350688uncharacterized LOC10835068846073321760817304Rat
1563055Elob-ps10elongin B, pseduogene 1046133418761334902Rat
1310325Chchd3coiled-coil-helix-coiled-coil-helix domain containing 346136035261616850Rat
1565435Hmgb1-ps5high-mobility group box 1, pseudogene 546180596461806669Rat
621791Exoc4exocyst complex component 446180770662584316Rat
41082831LOC120102446FAD-linked sulfhydryl oxidase ALR-like46209998762100799Rat
9472094Spmip1sperm microtubule inner protein 145807157458073496Rat

Markers in Region
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolExpected SizeChrStartStopSpeciesMatch
34200D4Mgh114442133334321333491Ratregion
34238D4Mgh225043952426439524530Ratregion
34282D4Mgh1513945669879056698927Ratregion
34379D4Mgh310045824513158245229Ratregion
34423D4Mgh2619043153230431532516Ratregion
34716D4Mgh1413343950527539505420Ratregion
33656D4Mit99945664777656647873Ratregion
33757D4Mit224945711443257114705Ratregion
36037D4Rat1313944199617341996312Ratregion
36127D4Rat917242690728526907447Ratregion
35260D4Rat2217046227785562278020Ratregion
37752D4Rat8918343644394736444128Ratregion
37948D4Rat10016843522511535225281Ratregion
36530D4Rat1713944839566048395759Ratregion
36540D4Rat2415045994893559949149Ratregion
36753D4Rat2014046105775661057896Ratregion
34967D4Rat1516245011984850119996Ratregion
35082D4Rat7313645866129958661423Ratregion
35160D4Rat1113143640514636405277Ratregion
35625D4Rat1417944446372044463908Ratregion
35847D4Rat1214643846577438465927Ratregion
35913D4Rat1016842959328729593455Ratregion
39688D4Rat21110644019349640193597Ratregion
39704D4Rat22222442271068522710908Ratregion
39748D4Rat15715045406901054069154Ratregion
39918D4Rat15521944952467449524880Ratregion
38116D4Rat13213046015269560152815Ratregion
38434D4Rat13413945275413852754255Ratregion
38440D8Rat10921743438534834385554Ratregion
38628D4Rat13022243865742738657645Ratregion
39980D4Rat15622144917811649178333Ratregion
40008D4Rat22422345136763751367850Ratregion
40162D4Rat21012543464711334647234Ratregion
38908D4Rat12613542949419529494328Ratregion
39110D4Rat10123344913190649132093Ratregion
39194D4Rat11524043717795037178180Ratregion
39548D4Rat15420344803565448035857Ratregion
42142D4Arb1133046067096960671203Ratregion
42156D4Arb2532043443011934430484Ratregion
42158D4Arb2613043950527539505418Ratregion
41202D4Rat15219744078009840780283Ratregion
42689D4Rat25120142284320422843398Ratregion
42690D4Rat25222543630326136303483Ratregion
42691D4Rat22321243884718238847397Ratregion
42691D4Rat22321243884718238847569Ratregion
42694D4Rat22520045978029159780469Ratregion
42695D4Rat29120446064368360643874Ratregion
40910D4Rat15823245784751957847754Ratregion
41102D4Rat15123543258398032584199Ratregion
41846D4Rat25423345316451053164745Ratregion
41888D4Rat28224544086875240869000Ratregion
41902D4Rat25321044724167547241885Ratregion
43782D4Got2017943854696138547140Ratregion
43783D4Got2116643723314237233308Ratregion
43784D4Got15714743773361237733759Ratregion
43786D4Got2423943831722238317461Ratregion
43787D4Got2517643896180238961978Ratregion
43788D4Got2724744246796842468215Ratregion
43789D4Got3218945079114750791338Ratregion
43790D4Got3413344603747946037612Ratregion
43791D4Got2927544994382349944098Ratregion
43793D4Got3112645326282153262949Ratregion
43794D4Got14622744711539047115617Ratregion
43795D4Wox1010045863587758635984Ratregion
43796D4Got4218045998245059982630Ratregion
43797D4Got3519845848983358490031Ratregion
43798D4Got4017746096550960965688Ratregion
43800D4Got3716246046211060462272Ratregion
43801D4Got3820846038142060381628Ratregion
43802D4Got4116246169765861697820Ratregion
43803D4Got399945843213358432232Ratregion
60429D4Got14714645499159154991735Ratregion
60433D4Got1926743644075636441020Ratregion
60435D4Got229043687397336874063Ratregion
60436D4Got2629844019331240193610Ratregion
60438D4Got3026345114149051141755Ratregion
60439D4Got3316245614286156143023Ratregion
625773D4Got2317343854696938547140Ratregion
629591D4Hmgc115944672719146727354Ratregion
66667D4Mco131644594826945948595Ratregion
67352D4Arb1717443775307137753245Ratregion
67353D4Arb1830242280936322809665Ratregion
1358007D16Chm7815842636671126366820Ratregion
1630504D4Wox5319842535758425357782Ratregion
1631920D4Got28114543346231433462458Ratregion
1631954D4Got28928142420136824201649Ratregion
1627175D4Uia1043928891439289215Ratregion
1627844D4Got28222342780898627809209Ratregion
1629143D4Wox3215542250627722506432Ratregion
1629639D4Got20117642483400924834180Ratregion
1629744D4Wox4113145917017659170307Ratregion
1639418D4Got3616645700072657000890Ratregion
1639433D4Got30314845581475255814897Ratregion
1641681D4Got20522243675010136750323Ratregion
1633620D4Got20626945988457259884841Ratregion
1640436D4Got30226642572784125728107Ratregion
1640737D4Got30727443147037731470649Ratregion
1634999D4Got28322642825234628252572Ratregion
1635755D4Wox3710645839515158395257Ratregion
1635808D4Got20218342157490121575084Ratregion
1635857D4Got25217042608089626081067Ratregion
1636092D4Got27822142941620429416425Ratregion
1636261D4Got28621243304435733044568Ratregion
1636357D4Got26519143464295934643150Ratregion
1636460D4Got28417043002924730029419Ratregion
1636528D2Got33213144970212349702153Ratregion
1636924D4Wox5416644672715946727325Ratregion
1637051D4Ulb317442488289124883065Ratregion
1637341D4Got24827742969707729697349Ratregion
1637821D4Got20415042710022527100375Ratregion
1638224D4Got29226643338273033382996Ratregion
1638305D4Got28515143155157231551723Ratregion
1638383D4Got30616042221757022217730Ratregion
1632459D4Got27615143516722435167370Ratregion
1632475D4Got29516642187376721873935Ratregion
1633717D4Got25516142437029024370451Ratregion
1634118D4Got28711442502054025020656Ratregion
1634619D4Got25013944276291542763049Ratregion
7206384fj64a08.x1044510169745102827Ratregion
7193111Col1a216743256383732564004Ratregion
7241149D4Kini328043102124831021530Ratregion
7241151D4Kini428543148275031483035Ratregion
7241153D4Kini517243155157931551751Ratregion
7241155D4Kini614143163163031631771Ratregion
7241157D4Kini721443172260531722819Ratregion
7241159D4Kini820643199788931998095Ratregion
7241161D4Kini920943202271532022924Ratregion
7241163D4Kini1033243210290532103237Ratregion
7241165D4Kini1143211205832112354Ratregion
7241167D4Kini1229643239799732398293Ratregion
7241169D4Kini1327143375719333757466Ratregion
7241171D4Kini1419442535331625353510Ratregion
7241173D4Kini1523842515516325155403Ratregion
7241175D4Kini1621242689607826896290Ratregion
7241177D4Kini1723242773266327732895Ratregion
7193020Dlx541643499918234999598Ratregion
7193021Dlx56543500316335003228Ratregion
7206264Adam2233342589711225897445Ratregion
7206272Opn1sw51045797980357980313Ratregion
7206464Smo94145837247558373416Ratregion
5036029PMC97559P111945873824758738366Ratregion
5038824RH12735421743329487433295091Ratregion
5038914RH12740518543335700833357193Ratregion
5039212RH12757619045936560559365795Ratregion
5036396PMC21729P119145767222857672419Ratregion
5038996RH12745318843136208631362274Ratregion
5039044RH12748019445299579452995988Ratregion
5036573AU04847316344995639549956437Ratregion
5036741AU04905614745846563458465781Ratregion
5036875AU04948417944968424349684422Ratregion
5037159IB80918245853065458530836Ratregion
5037197RH9182019243498961734989809Ratregion
5035623WI-1802712542460944824609573Ratregion
5035637D7S29649445852786858527962Ratregion
5033869RH14042318245413895154139133Ratregion
5025984RH13045718344405177444051957Ratregion
7206128UniSTS:53217111443320470533204819Ratregion
5031516AU04807115244137361441373766Ratregion
5034091RH14133018843285371332853901Ratregion
5034095RH14134218844636575946365947Ratregion
5028913RH14279723444567204645672280Ratregion
5034343SGC3451213442465233024652466Ratregion
5026456RH13228420345344058153440784Ratregion
5026500RH13245119143259860832598800Ratregion
5029141RH14367412443312854133128665Ratregion
5026698RH13319319945787488457875083Ratregion
5026758RH13341918146072035060720532Ratregion
5032273AW0498459945939876059398859Ratregion
5032329Copg2as142945936597159366400Ratregion
5027083STS-H2311716045743507257435232Ratregion
5029713AI55545118743052189530522341Ratregion
5035475AI40660816045877212458772284Ratregion
5027111GDB:131795414645195579551955941Ratregion
5027139A005W0915345050310950503262Ratregion
5029735BE10221520845902419459024402Ratregion
5032631RH13471919142597360325973794Ratregion
5032661RH13482920946028356560283774Ratregion
5032675RH13488020143052005030520251Ratregion
5034888AI41107313445787354557873679Ratregion
5034960AA80102116443334803433348198Ratregion
5027287AW22754814642931406329314209Ratregion
5027311AV0059169543358994233590037Ratregion
5032843RH13669824942928429429284547Ratregion
5035282BF38772015244042285340423004Ratregion
5030081BE11006315245936519059365342Ratregion
5032955RH13709418143494757434947755Ratregion
5025012AW55010813645178069051780826Ratregion
5027697WI-1479515046204024562040395Ratregion
5033025RH13731619846013535160135550Ratregion
5033093RH13756619543647304736473242Ratregion
5033123RH13768112145194339751943518Ratregion
5025240RH12755618242836796028368142Ratregion
502783306.MHAa81T_M13Rev.seq14043033158430331724Ratregion
5030467BF39786514345177263651772779Ratregion
5025312RH12783621844214200542142223Ratregion
5030681BI30178415445287830552878465Ratregion
5033503RH13906619642563161225631808Ratregion
5028358RH6611815345344395853444111Ratregion
5030927BF39945715945801443358014592Ratregion
5033807RH14019420243059004430590246Ratregion
5025806RH12974919842356110323561301Ratregion
5025934RH13025621446013207260132286Ratregion
5052045RH948089945767255957672658Ratregion
5051188RH13449020243354609933546301Ratregion
5053653RH14277327045967530159675571Ratregion
5055919RH14407823345015838950158622Ratregion
5056219RH14425218146016245460162635Ratregion
5054585RH14330929444045571040456004Ratregion
5054635RH14333719346013072260130915Ratregion
5059420AW53066815143326006133260212Ratregion
5057842BF38624717644731518847315364Ratregion
5054749RH14340314943285230232852451Ratregion
5058018BF38647515045997741759977567Ratregion
5058554BF39327824043327976133280001Ratregion
5058594BE10213915742461735024617507Ratregion
5055831RH14402713142460961024609741Ratregion
5055903RH14406910045139779651397896Ratregion
5055125RH14362017043279601832796188Ratregion
5056313RH14430610045741846857418568Ratregion
5056687RH14452224744685889646859143Ratregion
5058084AI07045121045685115456851364Ratregion
5058938BF39384114242567222225672364Ratregion
5059746BE09779019945938911959389318Ratregion
5059746BE09779019945939458159394780Ratregion
5052935RH14235916844183074041830908Ratregion
5052985RH14238818946072050760720696Ratregion
5053005RH14239915045853060158530751Ratregion
5053063RH14243223942513272425132963Ratregion
5059912BF40010516445308287653083040Ratregion
5058354BF41963419346052302160523214Ratregion
5049986RH13379619742507611025076307Ratregion
5049986RH13379619742509369225093889Ratregion
5052289MDB107115845027845150278609Ratregion
5058368BF41976518743673886836739055Ratregion
5059204BF38764017045869303258693202Ratregion
5050400RH13403519744496792744968117Ratregion
5059250BF38788015845899725058997408Ratregion
5059318BG37729512945857802058578149Ratregion
5057712BF38606316245154219951542361Ratregion
5052450Z3155712742344079323440920Ratregion
5053919RH14292630044539833345398633Ratregion
5054027RH14298813343354541933545552Ratregion
5054073RH14301510846182074061820848Ratregion
5051407AI38575210243499939734999499Ratregion
5054343RH14317019143030472630304917Ratregion
5054487RH14325318042597361625973796Ratregion
5053101RH14245410245818678058186882Ratregion
5053211RH14251715542991617529916330Ratregion
5053289RH14256223242583909225839324Ratregion
5050890RH13431719943338984133390041Ratregion
5041882RH12911318145926329059263471Ratregion
5040724RH12844721945814312758143336Ratregion
5043304RH12994916543578574535785910Ratregion
5043448RH13003119444633402146334214Ratregion
5041164RH12869918544601944746019632Ratregion
5045392RH13115218443054744630547630Ratregion
5041380RH12882421144731185147312062Ratregion
5041530RH12891015746012843660128593Ratregion
5044274RH13050818142853327728533458Ratregion
5044664RH13073320943198191431982123Ratregion
5044750RH13078220745899006558990272Ratregion
5044834RH13083020345877040658770609Ratregion
5046418RH13174119642845223628452432Ratregion
5044348RH13055119045941214359412333Ratregion
5045376RH13114219445787378357873977Ratregion
5047484RH13235420645299441152994617Ratregion
5047574RH13240619742844985828450603Ratregion
5045002RH13092719543418016734180571Ratregion
5045212RH13104818944404993944050128Ratregion
5047688RH13247121845256925852569476Ratregion
5048994RH13322521943202813132028350Ratregion
5045640RH13129418246183072961830911Ratregion
5047746RH13250520043607007436070274Ratregion
5049108RH13329021242851558928515801Ratregion
5049168RH13332419043259910532599295Ratregion
5045920RH13145519646217805162178247Ratregion
5049004RH13323119745905660159056798Ratregion
5041990RH12917521043647425836474468Ratregion
5042012RH12918819643051967430519870Ratregion
5047340RH13227119445027815550278349Ratregion
5047396RH13230318142850371128503892Ratregion
5049654RH13360521843016160130161819Ratregion
5040206RH12815020343202716532027368Ratregion
5042934RH12973119443063861230638806Ratregion
5039390RH12767821145797623157976442Ratregion
5039410RH12769019543158535331585548Ratregion
5042086RH12923118542835882128359006Ratregion
5042188RH12929118343005520030055383Ratregion
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5507527REN11424024645673067156730917Ratregion
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5507531REN11485919745684917056849367Ratregion
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5503869LEP-38345767056957672217Ratregion
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5505003Wnt225044636694846367198Ratregion
5505163Lrrc494845743585557436803Ratregion
5506082UniSTS:498320116045027490850276068Ratregion
5506278G2054715345050310950503262Ratregion
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5506135UniSTS:4984417145159430951594380Ratregion
5506630ECD0020294644367803743678983Ratregion
5506636ECD0036191244368001243680924Ratregion
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5507417REN10227722944346671443466943Ratregion
5507419REN10227823644346691943467155Ratregion
5507115UniSTS:22458912642149344921493575Ratregion
5507315G4471411443628866136288775Ratregion
5499533stSG61151824444370522043705464Ratregion
5499535stSG611519123744370546943706706Ratregion
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5499531stSG611494109844367904443680142Ratregion
5499543AI85403213242597053825970670Ratregion
5500019UniSTS:23617110842947022629470334Ratregion
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5500242U6688866443316283533163499Ratregion
5500294D20S10048943663525836635347Ratregion
5500310GDB:1803505443258948532590378Ratregion
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5500428REN6225124544687725646877501Ratregion
5500430REN6397622444636804346368267Ratregion
5500432REN6445625344624861346248866Ratregion
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5500180MT348240144445596244456363Ratregion
5500336GDB:19474862143775860837759229Ratregion
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5500945MARC_9717-9718:996688547:130943500291635003225Ratregion
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5505039Met7044581953945819609Ratregion
5501754MARC_11525-11526:1001518036:115845796634257967118Ratregion
5501679UniSTS:26567729344182910041829392Ratregion
5501818MARC_13931-13932:1007579490:149044371020443710694Ratregion
5505518UniSTS:1040810546072029760720402Ratregion
5505855UniSTS:4959549145416034554160436Ratregion
5505883Grm36542436503124365096Ratregion
5502684Asb413143351505733515188Ratregion
5506757G4521321245574503355745245Ratregion
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5507427REN10315624444364621043646454Ratregion
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5507431REN10324024944366862143668870Ratregion
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5502864Dlx6043498845234989250Ratregion
5502251AU04127717545837354958373724Ratregion
Position Markers

Flank 1: (D4Mgh1)
Rat AssemblyChrPosition (strand)Source
mRatBN7.2421,333,343 - 21,333,491 (+)MAPPER
Rnor_6.0418,222,187 - 18,222,332NCBI
Rnor_5.0418,184,531 - 18,184,676UniSTS
RGSC_v3.4417,617,956 - 17,618,102RGD
RGSC_v3.4417,617,957 - 17,618,102UniSTS
RGSC_v3.1417,617,956 - 17,618,102RGD
Celera416,853,169 - 16,853,313UniSTS
RH 3.4 Map4588.2UniSTS
RH 3.4 Map4588.2RGD
Cytogenetic Map4q12UniSTS
Peak: (D4Mgh14)
Rat AssemblyChrPosition (strand)Source
mRatBN7.2439,505,275 - 39,505,420 (+)MAPPER
Rnor_6.0437,685,175 - 37,685,319NCBI
Rnor_5.0437,534,124 - 37,534,268UniSTS
RGSC_v3.4436,592,628 - 36,592,773RGD
RGSC_v3.4436,592,629 - 36,592,773UniSTS
RGSC_v3.1436,711,169 - 36,711,313RGD
Celera434,949,819 - 34,949,963UniSTS
RH 3.4 Map4220.4UniSTS
RH 3.4 Map4220.4RGD
RH 2.0 Map4296.9RGD
SHRSP x BN Map421.52RGD
Cytogenetic Map4 RGD
Flank 2: (D4Rat22)
Rat AssemblyChrPosition (strand)Source
mRatBN7.2462,277,855 - 62,278,020 (+)MAPPER
Rnor_6.0461,038,901 - 61,039,065NCBI
Rnor_5.0460,769,721 - 60,769,885UniSTS
RGSC_v3.4460,974,346 - 60,974,511RGD
RGSC_v3.4460,974,347 - 60,974,511UniSTS
RGSC_v3.1461,250,477 - 61,250,641RGD
Celera457,345,999 - 57,346,163UniSTS
RH 3.4 Map4372.0RGD
RH 3.4 Map4372.0UniSTS
RH 2.0 Map4420.2RGD
SHRSP x BN Map432.92RGD
Cytogenetic Map4q22UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2302371Stl22Serum triglyceride level QTL 225.15blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)4521829457114705Rat
1358352Srcrt3Stress Responsive Cort QTL 32.29blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)438465774146803430Rat
1549843Bw53Body weight QTL 530.0001body mass (VT:0001259)body weight gain (CMO:0000420)461697658103194791Rat
61445Strs3Sensitivity to stroke QTL 33cerebrum integrity trait (VT:0010549)post-insult time to onset of cerebrovascular lesion (CMO:0002343)44043338885433388Rat
6893678Bw108Body weight QTL 1082.60.006body mass (VT:0001259)body weight (CMO:0000012)44345797688457976Rat
1357341Gluco5Glucose level QTL 56.4adipocyte free fatty acid secretion trait (VT:0010465)absolute change in adipocyte free fatty acid secretion per unit volume (CMO:0001446)4133250345Rat
1357343Gluco4Glucose level QTL 40.00002adipocyte glucose uptake trait (VT:0004185)adipocyte maximal glucose uptake to basal glucose uptake ratio (CMO:0000874)4133250345Rat
1358363Sradr3Stress Responsive Adrenal Weight QTL 36.19adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)457486946102486946Rat
61333Gluco16Glucose level QTL 164.30.00001adipocyte glucose uptake trait (VT:0004185)absolute change in adipocyte glucose uptake (CMO:0000873)4130372989Rat
10450825Scl78Serum cholesterol level QTL 783.70.01blood VLDL cholesterol amount (VT:0005144)blood low density lipoprotein cholesterol level (CMO:0000053)44917811657114705Rat
1549839Bw52Body weight QTL 520.0001body mass (VT:0001259)body weight gain (CMO:0000420)461697658115089733Rat
61336Bp21Blood pressure QTL 214.6arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)45711470578881294Rat
2313401Anxrr27Anxiety related response QTL 27aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)41793350862933508Rat
10450821Scl77Serum cholesterol level QTL 774.10.01blood VLDL cholesterol amount (VT:0005144)blood high density lipoprotein cholesterol level (CMO:0000052)44917811657114705Rat
10450818Scl76Serum cholesterol level QTL 763.60.01blood VLDL cholesterol amount (VT:0005144)blood high density lipoprotein cholesterol level (CMO:0000052)44917811657114705Rat
631209Bw2Body weight QTL24.2retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)4994088544463908Rat
6909128Pancm4Pancreatic morphology QTL 411.35pancreas mass (VT:0010144)pancreas wet weight (CMO:0000626)42690728575585128Rat
61475Aia2Adjuvant induced arthritis QTL 25.8joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)43950527573892441Rat
8694439Bw168Body weight QTL 1689.570.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)44043341485433414Rat
9589046Scfw2Subcutaneous fat weight QTL 25.540.001subcutaneous adipose mass (VT:1000472)abdominal subcutaneous fat pad weight (CMO:0002069)4131934116Rat
8655906Rf60Renal function QTL 603.8blood creatinine amount (VT:0005328)creatinine clearance (CMO:0000765)42949419581006281Rat
61351Bp33Blood pressure QTL 330.0018arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)4127716890Rat
1641905Colcr1Colorectal carcinoma resistance QTL 14.30.0003intestine integrity trait (VT:0010554)benign colorectal tumor surface area measurement (CMO:0001799)4129494328Rat
6909122Insul22Insulin level QTL 224.63blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)42690728575585128Rat
1300156Bp179Blood pressure QTL 1792.85arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)43846577439524530Rat
2300179Bmd50Bone mineral density QTL 505.90.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)460928534105928534Rat
1354660Salc1Saline consumption QTL 111.26drinking behavior trait (VT:0001422)saline drink intake rate (CMO:0001627)444463908148090542Rat
1298082Stresp4Stress response QTL 4blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)450119848146803430Rat
9590304Scort17Serum corticosterone level QTL 174.960.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)41008408955084089Rat
1300139Hrtrt6Heart rate QTL 62.85heart pumping trait (VT:2000009)heart rate (CMO:0000002)439524264116179656Rat
70200Alc18Alcohol consumption QTL 189.2drinking behavior trait (VT:0001422)ethanol intake volume to total fluid intake volume ratio (CMO:0001591)456647873149491524Rat
1578657Bss12Bone structure and strength QTL 128.9femur morphology trait (VT:0000559)femoral neck cross-sectional area (CMO:0001697)460220938105220938Rat
1578658Bss13Bone structure and strength QTL 138femur strength trait (VT:0010010)femoral neck polar moment of inertia (CMO:0001670)460220938105220938Rat
4889969Bss96Bone structure and strength QTL 964.9tibia size trait (VT:0100001)tibia cortical bone volume (CMO:0001725)45664777678882945Rat
11530004Niddm71Non-insulin dependent diabetes mellitus QTL 710.001blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)43258419952754138Rat
1354665Stl10Serum triglyceride level QTL 103.57blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)42133334344463908Rat
2316958Gluco58Glucose level QTL 5810blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)411320076180699135Rat
1300141Bp178Blood pressure QTL 178arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)41002490139524530Rat
4889972Bss97Bone structure and strength QTL 975.6tibia size trait (VT:0100001)tibia total bone volume (CMO:0001724)45664777678882945Rat
2303585Bw86Body weight QTL 864body mass (VT:0001259)body weight (CMO:0000012)41467806559678065Rat
5685012Bmd87Bone mineral density QTL 875.1tibia mineral mass (VT:1000283)bone mineral content (CMO:0001554)45664777678882945Rat
8552903Pigfal2Plasma insulin-like growth factor 1 level QTL 27.3blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)4131934116Rat
724557Plsm1Polydactyly-luxate syndrome (PLS) morphotypes QTL 10.0003forelimb integrity trait (VT:0010562)front foot phalanges count (CMO:0001947)4127716890Rat
9590100Sffal4Serum free fatty acids level QTL 47.360.05blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)4131934116Rat
5685009Bmd86Bone mineral density QTL 863.7tibia mineral mass (VT:1000283)bone mineral density (CMO:0001226)45664777678882945Rat
8552906Pigfal3Plasma insulin-like growth factor 1 level QTL 3blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)41008408955084089Rat
8655949Rf62Renal function QTL 6222blood urea nitrogen amount (VT:0005265)plasma urea nitrogen level (CMO:0000586)43443011944463908Rat
1331807Rf31Renal function QTL 312.988urine potassium amount (VT:0010539)urine potassium level (CMO:0000128)43952426474726312Rat
6478766Anxrr47Anxiety related response QTL 470.09637locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)41008408955084089Rat
8552782Vie1Viral induced encephalitis QTL 126.4brain integrity trait (VT:0010579)encephalitis incidence/prevalence measurement (CMO:0002361)43443048482490359Rat
634311Sach7Saccharin preference QTL 7taste sensitivity trait (VT:0001986)saccharin intake volume to total fluid intake volume ratio (CMO:0001601)45711443281266970Rat
70222Eae2Experimental allergic encephalomyelitis QTL 24.3nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)42133334339505420Rat
738009Sach4Saccharine consumption QTL 44.90.000016consumption behavior trait (VT:0002069)saccharin intake volume to total fluid intake volume ratio (CMO:0001601)459948935154902892Rat
631642Stl2Serum triglyceride level QTL 23.3blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)4521917856647776Rat
6478769Anxrr48Anxiety related response QTL 480.02514locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)41008408955084089Rat
631261Tcas3Tongue tumor susceptibility QTL 36.88tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)41081417091360527Rat
2312567Glom19Glomerulus QTL 191.90.006kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)445456990146803430Rat
634323Hc2Hypercalciuria QTL 22.15urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)421079645210796Rat
8655961Kidm43Kidney mass QTL 4318kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)436303261103194984Rat
1354612Foco1Food consumption QTL 18.87eating behavior trait (VT:0001431)food intake rate (CMO:0000427)444463908148090542Rat
61408Scl23Serum cholesterol level QTL 230.0005blood HDL phospholipid amount (VT:0010504)serum high density lipoprotein phospholipid level (CMO:0001567)4127716890Rat
8552803Bw144Body weight QTL 14416body mass (VT:0001259)change in body weight to body weight ratio (CMO:0002216)42271068534430484Rat
8694374Bw155Body weight QTL 1553.390.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)41008408955084089Rat
2303168Bp330Blood pressure QTL 3304.250.017arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)45214602146446691Rat
8552801Bw143Body weight QTL 1437.3body mass (VT:0001259)change in body weight to body weight ratio (CMO:0002216)43443048482490359Rat
738031Alc14Alcohol consumption QTL 147.60.00003consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)459948935154902892Rat
2290374Gluco32Glucose level QTL 326.27blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)43717795044463908Rat
61412Pia2Pristane induced arthritis QTL 23.9joint integrity trait (VT:0010548)post-insult time to onset of experimental arthritis (CMO:0001450)42133334362278020Rat
6478724Anxrr35Anxiety related response QTL 350.00449defecation behavior trait (VT:0010462)defecation measurement (CMO:0000997)41008408955084089Rat
61415Eae11Experimental allergic encephalomyelitis QTL 112.9nervous system integrity trait (VT:0010566)post-insult time to onset of experimental autoimmune encephalomyelitis (CMO:0001422)4139505420Rat
619616Bp79Blood pressure QTL 790.0292arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)4521460278882945Rat
1576305Emca6Estrogen-induced mammary cancer QTL 65.8mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)444463720155883716Rat
61418Pia5Pristane induced arthritis QTL 54.5joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)462277855128289560Rat
738016Alc16Alcohol consumption QTL 163.60.00015consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)459948935154902892Rat
8552809Vie5Viral induced encephalitis QTL 525.3brain integrity trait (VT:0010579)encephalitis incidence/prevalence measurement (CMO:0002361)43443048482490359Rat
1558651Swd3Spike wave discharge measurement QTL 34.620.000024brain electrophysiology trait (VT:0010557)brain spike-and-wave discharge frequency (CMO:0001742)45843213392991462Rat
1358201Gluco12Glucose level QTL121.6adipocyte glucose uptake trait (VT:0004185)adipocyte maximal glucose uptake (CMO:0000870)4521839229593287Rat
4889511Gluco61Glucose level QTL 614.70.001blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)43717795040869000Rat
738021Hcar13Hepatocarcinoma resistance QTL 134.3liver integrity trait (VT:0010547)liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)4132584199Rat
1358203Stl19Serum triglyceride level QTL 192.80.002blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)4521829465958103Rat
1641833Alc21Alcohol consumption QTL 218.60.0001drinking behavior trait (VT:0001422)ethanol drink intake rate (CMO:0001407)456698790126192555Rat
631546Bp86Blood pressure QTL 863.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)45711443291360801Rat
9589097Slep11Serum leptin concentration QTL 115.090.001blood leptin amount (VT:0005667)plasma leptin level (CMO:0000781)4131934116Rat
12798520Anxrr55Anxiety related response QTL 554.450.01locomotor behavior trait (VT:0001392)number of rearing movements with lid-pushing in an experimental apparatus (CMO:0002715)432583980114627242Rat
631671Iddm11Insulin dependent diabetes mellitus QTL 113.60.0012blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)45863587778886137Rat


Additional Information

Database Acc Id Source(s)
NCBI Gene Pia2

RGD Curation Notes
Note Type Note Reference
qtl_cross_type intercross  
qtl_disease the disease susceptibility is derived from E3 strain 61089
qtl_gene 98 known and 52 novel genes were found in an analysis based on PubMed and OMIM data 2307198
qtl_gene whole genome analysis using PGMapper revealed Irf5, Pon1 as RA associated genes and Irf5 as RA associated polymorphism either in coding or regulatory region 2300074
qtl_general associates with the arthritis onset 61089
qtl_general significant in females appears to control delayed disease onset in DA rats 61089