Pia2 QTL Report (Rattus norvegicus) - Rat Genome Database

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QTL: Pia2 (Pristane induced arthritis QTL 2) Rattus norvegicus

Symbol: Pia2
Name: Pristane induced arthritis QTL 2
RGD ID: 61412
Trait: joint integrity trait   (VT:0010548)    
Measurement Type: post-insult time to onset of experimental arthritis   (CMO:0001450)    
LOD Score: 3.9
P Value: Not Available
Variance: Not Available
Inheritance Type: dominant
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2421,333,343 - 62,278,020RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.0418,222,187 - 61,039,065RGD_MAPPER_PIPELINERnor6.0
Rnor_5.0418,184,531 - 60,769,885RGDRnor5.0
RGSC_v3.4417,617,956 - 60,974,511RGDRGSC3.4
RGSC_v3.1417,617,956 - 61,250,641RGD
Cross Type: F2
Strains Crossed: DA E3 
JBrowse: View Region in Genome Browser (JBrowse)
Model



Disease Annotations     Click to see Annotation Detail View

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
Experimental Data Annotations     Click to see Annotation Detail View

Experimental Condition
pristane  (IDA)

Measurement Method

Vertebrate Trait

Rat Strain
DA  (IEA)
E3  (IEA)

References

Related QTLs

Related QTL Description Reference
Aia2 maps to same region RGD:61035
Eae11 maps to same region RGD:61031


Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
2481Cyp51cytochrome P450, family 5143003695630055410Rat
2506Dlx5distal-less homeobox 543499913935003504Rat
2512Dync1i1dynein cytoplasmic 1 intermediate chain 143385259734166159Rat
3082MetMET proto-oncogene, receptor tyrosine kinase44579045645898139Rat
2744Grm3glutamate metabotropic receptor 342436485424643972Rat
3846Tfectranscription factor EC44510612945180236Rat
3726Smosmoothened, frizzled class receptor45834410158372828Rat
69061Pdk4pyruvate dehydrogenase kinase 443359179633601798Rat
70966Dmtf1cyclin D binding myb-like transcription factor 142490993724950786Rat
3318Abcb1bATP-binding cassette, subfamily B (MDR/TAP), member 1B42524276125325194Rat
70908Crotcarnitine O-octanoyltransferase42506827025133111Rat
620062Pon1paraoxonase 143329473733325759Rat
3455Ptprz1protein tyrosine phosphatase, receptor type Z145139731651595220Rat
68393Kcnd2potassium voltage-gated channel subfamily D member 244977581250277746Rat
3218Nxph1neurexophilin 143699806837311135Rat
3600Rps4x-ps9ribosomal protein S4, X-linked, pseudogene 943775837337759289Rat
3807Tac1tachykinin, precursor 143567918335687180Rat
621878Podxlpodocalyxin-like46013512460181829Rat
621346Wnt2Wnt family member 244632840846374673Rat
727939Sema3dsemaphorin 3D42231676922505930Rat
621351Col1a2collagen type I alpha 2 chain43256393832598868Rat
621278Arf5ADP-ribosylation factor 545703852157041447Rat
621318Mterf1mitochondrial transcription termination factor 143022634530233402Rat
620383Calucalumenin45794908657976589Rat
620076Mkln1muskelin 145981591260124047Rat
620408N5DNA binding protein N545890039858902597Rat
620248Abcb4ATP binding cassette subfamily B member 442515099825209489Rat
3000Lepleptin45766112757675262Rat
628691Cttnbp2cortactin binding protein 244680097546964681Rat
628724LipogeninLipogenin45735629857357553Rat
61916Fzd1frizzled class receptor 142931030329314701Rat
61919Slc13a1solute carrier family 13 member 145256917952647126Rat
620547Spam1sperm adhesion molecule 145330274553312913Rat
620735Tas2r118taste receptor, type 2, member 11845244920852450107Rat
3155Ndufa5NADH:ubiquinone oxidoreductase subunit A545299732753005685Rat
621001Calcrcalcitonin receptor43166127031736392Rat
620433Pax4paired box 445705845357065995Rat
2203Bet1Bet1 golgi vesicular membrane trafficking protein43211623232126592Rat
621465Ica1islet cell autoantigen 143665647536804705Rat
619848Gpr37G protein-coupled receptor 3745413886054160927Rat
619858Grm8glutamate metabotropic receptor 845580576256731690Rat
1303148ST7suppression of tumorigenicity 744604165546289745Rat
1307050Steap2STEAP2 metalloreductase42834776928368177Rat
619951Abcb1aATP binding cassette subfamily B member 1A42535746725529941Rat
620348Cav2caveolin 244561676645624144Rat
2332CftrCF transmembrane conductance regulator44656126946728759Rat
1303037Tmem106btransmembrane protein 106B44132812541347315Rat
628629Tfpi2tissue factor pathway inhibitor 243198178631986707Rat
2280Cav1caveolin 144564062445673708Rat
1303047Fscn3fascin actin-bundling protein 345704279757052224Rat
1302965Pon3paraoxonase 343335698333383681Rat
621105C1galt1core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase, 143593074335966102Rat
2162Asnsasparagine synthetase (glutamine-hydrolyzing)43578499535803474Rat
621515Gng11G protein subunit gamma 1143202300332028443Rat
620833Akap9A-kinase anchoring protein 943005673830192716Rat
621033Opn1swopsin 1, short wave sensitive45797731757980457Rat
1304603Nrf1nuclear respiratory factor 145866493258772328Rat
735193Fam3cFAM3 metabolism regulating signaling molecule C45083992950887276Rat
621791Exoc4exocyst complex component 446180770662584316Rat
1306810Rpa3replication protein A343630464936307755Rat
71011Gpr85G protein-coupled receptor 8544210013842109584Rat
621121Cdk6cyclin-dependent kinase 643063765030829688Rat
3657Sema3asemaphorin 3A42128239821754834Rat
1305854Dbf4DBF4 zinc finger42567657025701152Rat
1306012Klf14Kruppel-like factor 1445955401159556933Rat
632280Ppp1r9aprotein phosphatase 1, regulatory subunit 9A43297050133292360Rat
2388Cpa1carboxypeptidase A145925741759263544Rat
1305697Hepacam2HEPACAM family member 243144619531480859Rat
1305563Cpa2carboxypeptidase A245916035759183677Rat
1303098Cpa5carboxypeptidase A545922975459249503Rat
1305143Sdhaf3succinate dehydrogenase complex assembly factor 343514313135160416Rat
727860Asb15ankyrin repeat and SOCS box containing 1545302155353050846Rat
1304751Vps50VPS50 subunit of EARP/GARPII complex43148442431585617Rat
735144WaslWASP like actin nucleation promoting factor45308353653132061Rat
1307778Tmem168transmembrane protein 16844183062341858763Rat
1305929Krit1KRIT1, ankyrin repeat containing43029920330333366Rat
1305544Cdk14cyclin-dependent kinase 1442866668829258865Rat
1308774Slc25a40solute carrier family 25, member 4042562000725676422Rat
1305878Gtpbp10GTP binding protein 1042847685728494375Rat
1306302Fam133bfamily with sequence similarity 133, member B43058964630616291Rat
1310447Irf5interferon regulatory factor 545812757758140665Rat
1311102Tspan12tetraspanin 1245031376850389246Rat
1311108Impdh1inosine monophosphate dehydrogenase 145780184257817434Rat
1303201Sgcesarcoglycan, epsilon43277147732842238Rat
1308938Tnpo3transportin 345814295458220365Rat
1308442Lsm8LSM8 homolog, U6 small nuclear RNA associated44730625947312125Rat
1311543Steap1STEAP family member 142827697228287484Rat
1311336Rbm28RNA binding motif protein 2845772222357761935Rat
1310325Chchd3coiled-coil-helix-coiled-coil-helix domain containing 346136035261616850Rat
1303194Hyal4hyaluronidase 445325617953274819Rat
1310811Aassaminoadipate-semialdehyde synthase45160646151663136Rat
1308432Miosmeiosis regulator for oocyte development43626341936289546Rat
1309792Klhdc10kelch domain containing 1045902130059079118Rat
1308074Plxna4plexin A446072024661162206Rat
1309682Tmem209transmembrane protein 20945910165659128687Rat
1306626Tmbim7transmembrane BAX inhibitor motif containing 743046665130499565Rat
1308807Flncfilamin C45803408858061882Rat
1309954Pon2paraoxonase 243338970233425186Rat
1309532MdficMyoD family inhibitor domain containing44397231044052162Rat
1310556Ing3inhibitor of growth family, member 345047795450505168Rat
1564680Col28a1collagen type XXVIII alpha 1 chain43606998036223128Rat
1562034Cep41centrosomal protein 4145927121859312343Rat
1560480Fezf1Fez family zinc finger 145176275151766078Rat
1563091Samd9sterile alpha motif domain containing 943116463931184325Rat
1562178RGD1562178similar to Adenylate kinase 244496660644967403Rat
1560448LOC500028hypothetical protein LOC50002843791783737918511Rat
1564798RGD1564798similar to RIKEN cDNA 1300007B1242389715723898281Rat
1561814Fam71f2family with sequence similarity 71, member F245788001957890824Rat
1563349Elapor2endosome-lysosome associated apoptosis and autophagy regulator family member 242461316324805729Rat
1561312Ppp1r3aprotein phosphatase 1, regulatory subunit 3A44293735342980195Rat
1560915Tspan33tetraspanin 3345830537858330013Rat
1562351Tmem243transmembrane protein 24342495079124968642Rat
1565889Slc25a13solute carrier family 25 member 1343417922434361912Rat
1565400RGD1565400similar to actin 3 - fruit fly (Drosophila melanogaster) (fragments)43762082037622087Rat
1564345Tex47testis expressed 4742664409826647393Rat
1566237RGD1566237similar to 60S ribosomal protein L3543487396834874422Rat
1560026Lrrc4leucine rich repeat containing 445743351857437114Rat
1561836Scand3-ps2SCAN domain containing 3, pseudogene 243251175332512295Rat
1561223Vwdevon Willebrand factor D and EGF domains44145357341525421Rat
1562992RGD1562992similar to heterogeneous nuclear ribonucleoprotein A2/B143093491530936057Rat
1566227RGD1566227similar to RIKEN cDNA 2610101N1044700588447008963Rat
1563764Phf14PHD finger protein 1444000969140195870Rat
1560872RGD1560872similar to interferon induced transmembrane protein 2 (1-8D)43096084530961278Rat
1564459Ccdc136coiled-coil domain containing 13645799782558027598Rat
1561053Cldn12claudin 1242852265928533647Rat
1559912RGD1559912similar to cytoskeleton associated protein 243295899232961061Rat
1564219Hyal6hyaluronoglucosaminidase 645323811853250783Rat
1564147Fam71f1family with sequence similarity 71, member F145791518457938593Rat
1559885Prrt4proline-rich transmembrane protein 445776605457777087Rat
1562696Pot1protection of telomeres 145420533054263137Rat
621552Atp6v1fATPase H+ transporting V1 subunit F45806766658070628Rat
1561882LOC287992hypothetical LOC28799242345689423501158Rat
1562004Gatad1GATA zinc finger domain containing 143050753030519109Rat
631340Snd1staphylococcal nuclease and tudor domain containing 145709520557494501Rat
1559697Foxp2forkhead box P244313382743712442Rat
1549770Capza2capping actin protein of muscle Z-line subunit alpha 244597814246014032Rat
1310794Rbm48RNA binding motif protein 4843055906330569409Rat
1559939Pex1peroxisomal biogenesis factor 143051995030558953Rat
1563055RGD1563055similar to transcription elongation factor B (SIII), polypeptide 246133418761334902Rat
1562253Wnt16Wnt family member 1645082096850831380Rat
1560157Zfp800zinc finger protein 80045679832656849766Rat
1559440Cadps2calcium dependent secretion activator 245178041552309641Rat
1560331Steap4STEAP4 metalloreductase42607718226099859Rat
1586093LOC366309similar to suppressor of initiator codon mutations, related sequence 146048509460485620Rat
1566201Thsd7athrombospondin type 1 domain containing 7A44046112440899345Rat
1584485Srisorcin42597349325997879Rat
1584730LOC681013similar to Stathmin (Phosphoprotein p19) (pp19) (Oncoprotein 18) (Op18) (Leukemia-associated phosphoprotein p18) (pp17) (Prosolin) (Metablastin) (Protein Pr22)43976968439770132Rat
1585861LOC680928similar to TGF beta-inducible nuclear protein 143756118837561974Rat
1584118Tsga13testis specific, 1345950177359522925Rat
1584719Ndufa4NDUFA4, mitochondrial complex associated44000221640009384Rat
1585845Rbmxl1bRNA binding motif protein, X-linked-like 1B44395626543957973Rat
621579Asz1ankyrin repeat, SAM and basic leucine zipper domain containing 144640048546456085Rat
1587590Rundc3bRUN domain containing 3B42546254325599477Rat
1585825LOC680964similar to high mobility group nucleosomal binding domain 143860485638606026Rat
1563612Glcci1glucocorticoid induced 143630795636635614Rat
1561754RGD1561754similar to high mobility group protein homolog HMG442789164327892122Rat
1566215Copg2COPI coat complex subunit gamma 245936608659501591Rat
1563619Cpa4carboxypeptidase A445918828459212255Rat
1563114Asb4ankyrin repeat and SOCS box-containing 443350699233544630Rat
1561099Zc3hc1zinc finger, C3HC-type containing 145898998959011925Rat
1561636RGD1561636similar to 60S ribosomal protein L3846029635860296687Rat
1566346Testestin LIM domain protein44536530445403829Rat
1562636RGD1562636similar to protein phosphatase 1, regulatory (inhibitor) subunit 3B42376587423768883Rat
1564521Tas2r7ltaste receptor type 2 member 7-like44156953641570447Rat
1565361RGD1565361similar to male-enhanced antigen-243108092331085695Rat
1563491Cped1cadherin-like and PC-esterase domain containing 145051671250789651Rat
1566275Hyal5hyaluronoglucosaminidase 545334110553412280Rat
1562387RGD1562387similar to GTP-binding protein NGB43939107939425066Rat
1565435RGD1565435similar to Hmgb1 protein46180596461806669Rat
1562531Samd9lsterile alpha motif domain containing 9-like43136205431376412Rat
1583532LOC681159similar to Glucosamine 6-phosphate N-acetyltransferase (Phosphoglucosamine transacetylase) (Phosphoglucosamine acetylase) (EMeg32 protein)44154887241549774Rat
1564895Ahcyl2adenosylhomocysteinase-like 245838129058531061Rat
1561119Kcpkielin cysteine rich BMP regulator45808285658118170Rat
1564656LOC500035hypothetical protein LOC50003544197006441978344Rat
1564660Ankrd7ankyrin repeat domain 744731227047336754Rat
1561539Dlx6distal-less homeobox 643498426434989926Rat
1590212Tmem229atransmembrane protein 229A45344028953445327Rat
1593790LOC685467similar to 40S ribosomal protein S345168221851683038Rat
1591364LOC685649similar to inosine monophosphate dehydrogenase 245273881252740348Rat
1589637LOC499997similar to Proteasome activator complex subunit 2 (Proteasome activator 28-beta subunit) (PA28beta) (PA28b) (Activator of multicatalytic protease subunit 2) (11S regulator complex beta subunit) (REG-beta)42772478627725601Rat
1589639LOC499995similar to CD2-associated protein42719800627200492Rat
1589640Zfp804bzinc finger protein 804B42660851027144717Rat
1591728LOC680472similar to Villin-143357586133580483Rat
1592092Lmod2leiomodin 245306742853075124Rat
1585016Adam22ADAM metallopeptidase domain 2242571605525970932Rat
1588437Strip2striatin interacting protein 245853603458578279Rat
1588440LOC500044similar to 60S ribosomal protein L7a44899400148996804Rat
1588441Bmt2base methyltransferase of 25S rRNA 2 homolog44188163041945472Rat
1588445LOC500007similar to EF hand calcium binding domain 143056904530589503Rat
1587202LOC502730similar to Pyruvate kinase isozymes M1/M2 (Pyruvate kinase muscle isozyme)44115613841277227Rat
1559502Ssmem1serine-rich single-pass membrane protein 145912873059139029Rat
1587791LOC685984similar to H3 histone, family 3B45684980056862528Rat
1562785Lrrd1leucine-rich repeats and death domain containing 143026314730293119Rat
1590628Sem1SEM1 26S proteasome subunit43467184834692005Rat
1597981LOC681293similar to heterogeneous nuclear ribonucleoprotein A344246088042461983Rat
1595475Gngt1G protein subunit gamma transducin 143200626732009252Rat
1595574Peg10paternally expressed 1043284239432855641Rat
1597088Ankib1ankyrin repeat and IBR domain containing 143033367830457781Rat
1595417Rnf148ring finger protein 14845214579852152508Rat
1597444LOC689042hypothetical protein LOC68904246064592160652324Rat
1596912Casd1CAS1 domain containing 143265888832739224Rat
1594589Mestmesoderm specific transcript45935444559364919Rat
1588991LOC685895similar to Thymidine kinase, cytosolic45476723154775827Rat
1589400LOC680676hypothetical protein LOC68067643527172035272156Rat
1590185LOC685783similar to suppressor of variegation 3-9 homolog 245377885553779842Rat
1596695Rnf133ring finger protein 13345214058452143357Rat
1595049LOC685399similar to tumor protein, translationally-controlled 145119572651196520Rat
1597712LOC685171similar to protein disulfide isomerase-associated 644760658247607800Rat
2314878Mir592microRNA 59245650528056505375Rat
2314881Mir653microRNA 65343169271431692810Rat
2314886Mir489microRNA 48943169335531693460Rat
2319288Ube2hubiquitin-conjugating enzyme E2H45883467458930156Rat
2319900Hilpdahypoxia inducible lipid droplet-associated45787107657875206Rat
2319954Gcc1GRIP and coiled-coil domain containing 145703081757042682Rat
2320107LOC100361458hypothetical LOC10036145845491521154915991Rat
2322154LOC100360402hypothetical LOC10036040243919157039192321Rat
2322826LOC100363521hypothetical LOC10036352144214169642143340Rat
2322347LOC100360305hypothetical LOC10036030543801322738013802Rat
2323113LOC100359932hypothetical LOC10035993243114616431148432Rat
2323280LOC100359863hypothetical LOC10035986345122310151296237Rat
2321181LOC100364378hypothetical LOC10036437844963262849633166Rat
2323518LOC100359722mitochondrial transcription termination factor-like42991257629913741Rat
4145674IqubIQ motif and ubiquitin domain containing45293176852993795Rat
2323857LOC100359436rCG25051-like44223615742358953Rat
2325362Mir879microRNA 87942472445524724530Rat
2325393Mir29amicroRNA 29a45965060859650695Rat
2323949LOC100362829proteasome subunit alpha type-2-like42783744727838144Rat
2325456Mir129-1microRNA 129-145762429557624366Rat
2325560Mir183microRNA 18345878861458788723Rat
2325582Mir96microRNA 9645878841158788516Rat
2325591Mir29b1microRNA 29b-145965098759651067Rat
4888604Mir3556amicroRNA 3556a45965059659650713Rat
4888613Mir3553microRNA 355345878861758788722Rat
4888616Mir182microRNA 18245878481858784879Rat
2324789LOC100359664mitochondrial transcription termination factor-like42988661129887781Rat
4888577Mir3587microRNA 358745965096059651022Rat
6488535LOC100912227uncharacterized LOC10091222743494327134993044Rat
6492128LOC10091160740S ribosomal protein S6-like42409335324096338Rat
6493676LOC100911252peptidyl-prolyl cis-trans isomerase A-like44182887341829619Rat
6494620LOC100911141zinc finger CCCH-type antiviral protein 1-like43108849231090178Rat
6496360Cfap69cilia and flagella associated protein 6942837960428452562Rat
7526246LOC102550307uncharacterized LOC10255030743601868036040591Rat
7531073LOC102556178uncharacterized LOC10255617844977514649777251Rat
7512277LOC102550644uncharacterized LOC10255064444546330045616095Rat
7536117LOC102555663uncharacterized LOC10255566342480591224807670Rat
7632355LOC102548336developmental pluripotency-associated protein 4-like46014565860148378Rat
7624497LOC102553320uncharacterized LOC10255332042359296423661292Rat
7641224LOC102548177uncharacterized LOC10254817744068219240683121Rat
7657264LOC102554854uncharacterized LOC10255485443441491134438788Rat
7609534LOC102548489uncharacterized LOC10254848944169446041701116Rat
7643646LOC102549088uncharacterized LOC10254908846061944960651830Rat
7661902LOC102557375uncharacterized LOC10255737543245489832457445Rat
7590867LOC102552990phosphoglycerate kinase 1-like45857843058580694Rat
7572472LOC102552043uncharacterized LOC10255204343264282332644911Rat
7596691LOC102547989uncharacterized LOC10254798943959860439678420Rat
7573585LOC102549548uncharacterized LOC10254954842906776129096268Rat
7545679LOC102548706LYR motif-containing protein 4-like44187003941878699Rat
7563828LOC102552812uncharacterized LOC10255281245827229058276271Rat
7584396LOC102552448uncharacterized LOC10255244843358265233589860Rat
7689603LOC102553416uncharacterized LOC10255341645920892859229667Rat
7715339LOC102550643uncharacterized LOC10255064343678088436787735Rat
7734714LOC102549955uncharacterized LOC10254995542721068227262917Rat
7696844LOC102551271uncharacterized LOC10255127144595179445956024Rat
7671121LOC102550745uncharacterized LOC10255074544571182445736550Rat
7747029LOC102553788uncharacterized LOC10255378843120032731216722Rat
7727723LOC102550083dead end protein homolog 1-like43041499030418462Rat
9213284LOC103692066sterile alpha motif domain-containing protein 9-like43126795031333461Rat
9159197LOC103692092transcription factor BTF3 pseudogene46050383260506706Rat
9112364LOC103692063uncharacterized LOC10369206344568273545711751Rat
9197484LOC103692044mitochondrial import inner membrane translocase subunit Tim8 A pseudogene42428942924289895Rat
9118001Pttg1ip2PTTG1IP family member 242856106328585400Rat
9348766LOC10369208460S ribosomal protein L27 pseudogene45174224651742683Rat
9267310LOC103692110interferon-induced transmembrane protein 2 pseudogene45954898259549845Rat
9229365LOC103692052uncharacterized LOC10369205243443911634447138Rat
9319274LOC103692071disks large homolog 5-like42997932029986368Rat
9383752LOC10369208160S ribosomal protein L3 pseudogene44999112250003764Rat
9374544LOC103692082protein SDA1 homolog45000501450017758Rat
9376829LOC103692067protein LLP homolog pseudogene43429933134305057Rat
9298384Smkr1small lysine-rich protein 145859536358609149Rat
9330178LOC10369207460 kDa heat shock protein, mitochondrial pseudogene44072136940732042Rat
9388809LOC103695208DNA-directed RNA polymerases I and III subunit RPAC2-like43592757835928571Rat
9389926LOC103692085uncharacterized LOC10369208545788614857889290Rat
9472094Atp6v1fnbATP6V1F neighbor45807076958073496Rat
9410961LOC103695207peptidyl-prolyl cis-trans isomerase D-like46007650560077634Rat
11356515LOC108350668uncharacterized LOC10835066843090631330909925Rat
11367620LOC108350659uncharacterized LOC10835065942495687624966778Rat
11449079LOC108350678uncharacterized LOC10835067845431932854357983Rat
11462374LOC108350658uncharacterized LOC10835065842477957124794265Rat
11435887LOC10835085260S ribosomal protein L29 pseudogene43366405033666091Rat
11363596LOC108350856uncharacterized LOC10835085644093701340945223Rat
11439332LOC108350688uncharacterized LOC10835068846073321760817304Rat
11431277LOC10835067160S ribosomal protein L31 pseudogene43430256234310161Rat
11453204LOC108350673uncharacterized LOC10835067344874646548832870Rat
11453897LOC108350853uncharacterized LOC10835085343529687035304056Rat
11406136LOC108350834uncharacterized LOC10835083445997441259990317Rat
11407309LOC108350669uncharacterized LOC10835066943205605032112584Rat
11390963LOC108351144uncharacterized LOC10835114442992256529975375Rat
11403251Trnap-agg6transfer RNA proline (anticodon AGG) 645798962657989697Rat
11519975LOC108350676uncharacterized LOC10835067645301133153070210Rat
11503662LOC108350685uncharacterized LOC10835068545908451759086860Rat
11494192LOC108350675uncharacterized LOC10835067545230586952306706Rat
11485345LOC108350687uncharacterized LOC10835068746069840160709474Rat
11516558LOC10835085540S ribosomal protein S23 pseudogene43826319438263628Rat
11517003LOC108350663uncharacterized LOC10835066342856196828575524Rat
41320971LOC120102218uncharacterized LOC12010221842209288522119273Rat
41086513LOC12010248260S ribosomal protein L19-like45841579258423285Rat
41167571LOC120102158uncharacterized LOC12010215845547681655492390Rat
41203940LOC120102612U7 small nuclear RNA45424994254250003Rat
41113020LOC120102239uncharacterized LOC12010223944563428745636852Rat
41113285LOC12010215660S ribosomal protein L21-like44449843144506388Rat
41140158LOC120102687small nucleolar RNA SNORA1744030905740309173Rat
41283447LOC120102623small nucleolar RNA SNORA7244956519549565318Rat
41114928LOC120102153RNA-binding protein EWS-like42752623327528198Rat
41278566LOC120102621U7 small nuclear RNA45424986854249928Rat
41279683LOC120102707small nucleolar RNA SNORA1745783546757835618Rat
41285462LOC120102481uncharacterized LOC12010248145830681058311531Rat
41325296LOC120102241uncharacterized LOC12010224144690628746931844Rat
41385577LOC120102243uncharacterized LOC12010224345071201250723386Rat
41116076LOC120102770small nucleolar RNA U345347260253472711Rat
41286244LOC120102221uncharacterized LOC12010222142517166925175960Rat
41118809LOC120102219uncharacterized LOC12010221942499381825003812Rat
41390060LOC120102445thyroid hormone receptor-associated protein 3-like45261899952623801Rat
41390098LOC120102572U6 spliceosomal RNA42944279329442899Rat
41148263LOC120102562U6 spliceosomal RNA43421018434210290Rat
41176579LOC120102251uncharacterized LOC12010225145916618959197472Rat
41187450LOC12010215760S ribosomal protein L21-like45238660952387084Rat
41211262LOC120102776U4 spliceosomal RNA43469280334692885Rat
41392109LOC120102745U1 spliceosomal RNA42794600627946166Rat
41096447LOC120102705small nucleolar RNA SNORA1745488282354882955Rat
41212670LOC120102465eukaryotic translation initiation factor 3 subunit K-like42501206425012685Rat
41264909LOC120102634small nucleolar RNA SNORA4444186943541869561Rat
41122445LOC120102236uncharacterized LOC12010223644016991540171995Rat
41368653LOC120102242cytochrome c oxidase subunit 6C-2-like45039472250401254Rat
41397044LOC120102466protein SET-like43574428035747371Rat
41126584LOC120102570U6 spliceosomal RNA45430365054303756Rat
41291133LOC120102511uncharacterized LOC12010251144160833041656692Rat
41397436LOC120102487uncharacterized LOC12010248745983240159845825Rat
41397929LOC120102250uncharacterized LOC12010225045758550557626664Rat
41196392LOC120102488uncharacterized LOC12010248845987710159880952Rat
41220038Fam237bfamily with sequence similarity 237 member B42845740228458728Rat
41270777LOC120102238uncharacterized LOC12010223844525441545365272Rat
41348167LOC120102240uncharacterized LOC12010224044597227945977980Rat
41373703LOC120102563U6 spliceosomal RNA44675272146752827Rat
41129509LOC120102767U2 spliceosomal RNA42661716926617247Rat
41230048LOC120102706small nucleolar RNA SNORA1744239883242398962Rat
41373976LOC120102480small nuclear ribonucleoprotein G-like45830406958304945Rat
41374934LOC120102237fatty acid-binding protein, heart-like44218552542189209Rat
41375555LOC120102231uncharacterized LOC12010223143459265234594248Rat
41082831LOC120102446FAD-linked sulfhydryl oxidase ALR-like46209998762100799Rat
41107770LOC120102227uncharacterized LOC12010222742958142329591564Rat
41165065NEWGENE_40926764transfer RNA proline (anticodon AGG)42578050525780585Rat
41403537LOC120102249metalloproteinase inhibitor 1-like45760435257606480Rat
41202184LOC120102233uncharacterized LOC12010223343578016035783088Rat
41233092LOC120102224uncharacterized LOC12010222442837771928379631Rat
40945863LOC12010222860S ribosomal protein L7-like43038981130390201Rat
40971411LOC120102154uncharacterized LOC12010215443864163538646263Rat
40946680LOC12010244340S ribosomal protein S15a-like42882455328832585Rat
40972881LOC120102759U2 spliceosomal RNA45645195256452095Rat
41011912LOC120102753U2 spliceosomal RNA44418613544186318Rat
40973663LOC120102749U1 spliceosomal RNA45500375355003908Rat
41340251LOC120102152ran-specific GTPase-activating protein-like42646895426472445Rat
40975034LOC120102559U4 spliceosomal RNA43292226032922342Rat
41340465LOC120102695small nucleolar RNA SNORA1745369658653696709Rat
40976402LOC120102629small nucleolar RNA SNORA3/SNORA45 family43596972735969848Rat
40955874LOC120102571U6 spliceosomal RNA42296828522968392Rat
40982246LOC120102694small nucleolar RNA SNORA1743973394139734060Rat
40982331LOC120102560U4 spliceosomal RNA45344725653447395Rat
40930852LOC120102657U1 spliceosomal RNA45695629256956455Rat
40958069LOC120102485uncharacterized LOC12010248545964749359762806Rat
41002790LOC120102608small nucleolar RNA SNORA73 family45625815156258354Rat
41002968LOC120102235uncharacterized LOC12010223544011938740123944Rat
41004839LOC120102244uncharacterized LOC12010224445314025853147391Rat
40935195Trnad-auctransfer RNA aspartic acid (anticodon AUC)45978748459787557Rat
41007128LOC120102673small nucleolar RNA SNORA1745338598353386111Rat
40965413LOC120102246uncharacterized LOC12010224645426329454267934Rat
41009975LOC120102483uncharacterized LOC12010248345837333558381144Rat
40966555LOC12010251240S ribosomal protein S2-like45118082051181483Rat
41046683LOC120102245thymosin beta-10-like45316672153167501Rat
41047811LOC120102220uncharacterized protein C11orf98 homolog42517472725175091Rat
41027801LOC120102734U1 spliceosomal RNA42915731229157442Rat
41028632LOC120102252uncharacterized LOC12010225245937459359381533Rat
41248065LOC120102234uncharacterized LOC12010223443890194838907419Rat
41319059LOC120102653small nucleolar RNA SNORA4843748469037484833Rat
41054814LOC120102464MLV-related proviral Env polyprotein-like42298847722990225Rat
41153446LOC120102756U2 spliceosomal RNA45579655355796713Rat
41258698LOC120102775U4 spliceosomal RNA42661813426618285Rat
41058543LOC120102484uncharacterized LOC12010248445863484558638314Rat
41222673LOC120102222uncharacterized LOC12010222242524540025250299Rat
41223455LOC120102479uncharacterized LOC12010247944981092649845924Rat
41033620LOC120102229uncharacterized LOC12010222943082950730936497Rat
41034677LOC120102248uncharacterized LOC12010224845680319656805686Rat
41334218LOC120102603U6 spliceosomal RNA42495272424952824Rat
41334655LOC120102640small nucleolar RNA SNORA3245895139358951489Rat
41038068LOC120102486uncharacterized LOC12010248645996954160002431Rat
41303418LOC120102627small nucleolar RNA SNORA3142308406723084203Rat
41303543LOC120102223uncharacterized LOC12010222342582169625835920Rat
41017039LOC12010244460S ribosomal protein L23a-like44614691746153007Rat
41065803LOC120102155uncharacterized LOC12010215544198883241995216Rat
41236019LOC120102247uncharacterized LOC12010224745443222054444023Rat
41017590LOC120102597U6 spliceosomal RNA44272163142721733Rat
41041657LOC120102230sterile alpha motif domain-containing protein 9-like43132004031333472Rat
41305886LOC120102232aldo-keto reductase family 1 member C2-like43460852234616239Rat
41019115LOC120102226uncharacterized LOC12010222642933283229340185Rat
41240640LOC120102760U2 spliceosomal RNA42637529726375438Rat

Markers in Region
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolExpected SizeChrStartStopSpeciesMatch
34200D4Mgh114442133334321333491Ratregion
34238D4Mgh225043952426439524530Ratregion
34282D4Mgh1513945669879056698927Ratregion
34379D4Mgh310045824513158245229Ratregion
34423D4Mgh2619043153230431532516Ratregion
34716D4Mgh1413343950527539505420Ratregion
33656D4Mit99945664777656647873Ratregion
33757D4Mit224945711443257114705Ratregion
36037D4Rat1313944199617341996312Ratregion
36127D4Rat917242690728526907447Ratregion
35260D4Rat2217046227785562278020Ratregion
37752D4Rat8918343644394736444128Ratregion
37948D4Rat10016843522511535225281Ratregion
36530D4Rat1713944839566048395759Ratregion
36540D4Rat2415045994893559949149Ratregion
36753D4Rat2014046105775661057896Ratregion
34967D4Rat1516245011984850119996Ratregion
35082D4Rat7313645866129958661423Ratregion
35160D4Rat1113143640514636405277Ratregion
35625D4Rat1417944446372044463908Ratregion
35847D4Rat1214643846577438465927Ratregion
35913D4Rat1016842959328729593455Ratregion
39688D4Rat21110644019349640193597Ratregion
39704D4Rat22222442271068522710908Ratregion
39748D4Rat15715045406901054069154Ratregion
39918D4Rat15521944952467449524880Ratregion
38116D4Rat13213046015269560152815Ratregion
38434D4Rat13413945275413852754255Ratregion
38440D8Rat10921743438534834385554Ratregion
38628D4Rat13022243865742738657645Ratregion
39980D4Rat15622144917811649178333Ratregion
40008D4Rat22422345136763751367850Ratregion
40162D4Rat21012543464711334647234Ratregion
38908D4Rat12613542949419529494328Ratregion
39110D4Rat10123344913190649132093Ratregion
39194D4Rat11524043717795037178180Ratregion
39548D4Rat15420344803565448035857Ratregion
42142D4Arb1133046067096960671203Ratregion
42156D4Arb2532043443011934430484Ratregion
42158D4Arb2613043950527539505418Ratregion
41202D4Rat15219744078009840780283Ratregion
42689D4Rat25120142284320422843398Ratregion
42690D4Rat25222543630326136303483Ratregion
42691D4Rat22321243884718238847569Ratregion
42691D4Rat22321243884718238847397Ratregion
42694D4Rat22520045978029159780469Ratregion
42695D4Rat29120446064368360643874Ratregion
40910D4Rat15823245784751957847754Ratregion
41102D4Rat15123543258398032584199Ratregion
41846D4Rat25423345316451053164745Ratregion
41888D4Rat28224544086875240869000Ratregion
41902D4Rat25321044724167547241885Ratregion
43782D4Got2017943854696138547140Ratregion
43783D4Got2116643723314237233308Ratregion
43784D4Got15714743773361237733759Ratregion
43786D4Got2423943831722238317461Ratregion
43787D4Got2517643896180238961978Ratregion
43788D4Got2724744246796842468215Ratregion
43789D4Got3218945079114750791338Ratregion
43790D4Got3413344603747946037612Ratregion
43791D4Got2927544994382349944098Ratregion
43793D4Got3112645326282153262949Ratregion
43794D4Got14622744711539047115617Ratregion
43795D4Wox1010045863587758635984Ratregion
43796D4Got4218045998245059982630Ratregion
43797D4Got3519845848983358490031Ratregion
43798D4Got4017746096550960965688Ratregion
43800D4Got3716246046211060462272Ratregion
43801D4Got3820846038142060381628Ratregion
43802D4Got4116246169765861697820Ratregion
43803D4Got399945843213358432232Ratregion
60429D4Got14714645499159154991735Ratregion
60433D4Got1926743644075636441020Ratregion
60435D4Got229043687397336874063Ratregion
60436D4Got2629844019331240193610Ratregion
60438D4Got3026345114149051141755Ratregion
60439D4Got3316245614286156143023Ratregion
625773D4Got2317343854696938547140Ratregion
629591D4Hmgc115944672719146727354Ratregion
66667D4Mco131644594826945948595Ratregion
67352D4Arb1717443775307137753245Ratregion
67353D4Arb1830242280936322809665Ratregion
1358007D16Chm7815842636671126366820Ratregion
1630504D4Wox5319842535758425357782Ratregion
1631920D4Got28114543346231433462458Ratregion
1631954D4Got28928142420136824201649Ratregion
1627175D4Uia1043928891439289215Ratregion
1627844D4Got28222342780898627809209Ratregion
1629143D4Wox3215542250627722506432Ratregion
1629639D4Got20117642483400924834180Ratregion
1629744D4Wox4113145917017659170307Ratregion
1639418D4Got3616645700072657000890Ratregion
1639433D4Got30314845581475255814897Ratregion
1641681D4Got20522243675010136750323Ratregion
1633620D4Got20626945988457259884841Ratregion
1640436D4Got30226642572784125728107Ratregion
1640737D4Got30727443147037731470649Ratregion
1634999D4Got28322642825234628252572Ratregion
1635755D4Wox3710645839515158395257Ratregion
1635808D4Got20218342157490121575084Ratregion
1635857D4Got25217042608089626081067Ratregion
1636092D4Got27822142941620429416425Ratregion
1636261D4Got28621243304435733044568Ratregion
1636357D4Got26519143464295934643150Ratregion
1636460D4Got28417043002924730029419Ratregion
1636528D2Got33213144970212349702153Ratregion
1636924D4Wox5416644672715946727325Ratregion
1637051D4Ulb317442488289124883065Ratregion
1637341D4Got24827742969707729697349Ratregion
1637821D4Got20415042710022527100375Ratregion
1638224D4Got29226643338273033382996Ratregion
1638305D4Got28515143155157231551723Ratregion
1638383D4Got30616042221757022217730Ratregion
1632459D4Got27615143516722435167370Ratregion
1632475D4Got29516642187376721873935Ratregion
1633717D4Got25516142437029024370451Ratregion
1634118D4Got28711442502054025020656Ratregion
1634619D4Got25013944276291542763049Ratregion
7206384fj64a08.x1044510169745102827Ratregion
7193111Col1a216743256383732564004Ratregion
7241149D4Kini328043102124831021530Ratregion
7241151D4Kini428543148275031483035Ratregion
7241153D4Kini517243155157931551751Ratregion
7241155D4Kini614143163163031631771Ratregion
7241157D4Kini721443172260531722819Ratregion
7241159D4Kini820643199788931998095Ratregion
7241161D4Kini920943202271532022924Ratregion
7241163D4Kini1033243210290532103237Ratregion
7241165D4Kini1143211205832112354Ratregion
7241167D4Kini1229643239799732398293Ratregion
7241169D4Kini1327143375719333757466Ratregion
7241171D4Kini1419442535331625353510Ratregion
7241173D4Kini1523842515516325155403Ratregion
7241175D4Kini1621242689607826896290Ratregion
7241177D4Kini1723242773266327732895Ratregion
7193020Dlx541643499918234999598Ratregion
7193021Dlx56543500316335003228Ratregion
7206264Adam2233342589711225897445Ratregion
7206272Opn1sw51045797980357980313Ratregion
7206464Smo94145837247558373416Ratregion
5036029PMC97559P111945873824758738366Ratregion
5038824RH12735421743329487433295091Ratregion
5038914RH12740518543335700833357193Ratregion
5039212RH12757619045936560559365795Ratregion
5036396PMC21729P119145767222857672419Ratregion
5038996RH12745318843136208631362274Ratregion
5039044RH12748019445299579452995988Ratregion
5036573AU04847316344995639549956437Ratregion
5036741AU04905614745846563458465781Ratregion
5036875AU04948417944968424349684422Ratregion
5037159IB80918245853065458530836Ratregion
5037197RH9182019243498961734989809Ratregion
5035623WI-1802712542460944824609573Ratregion
5035637D7S29649445852786858527962Ratregion
5033869RH14042318245413895154139133Ratregion
5025984RH13045718344405177444051957Ratregion
7206128UniSTS:53217111443320470533204819Ratregion
5031516AU04807115244137361441373766Ratregion
5034091RH14133018843285371332853901Ratregion
5034095RH14134218844636575946365947Ratregion
5028913RH14279723444567204645672280Ratregion
5034343SGC3451213442465233024652466Ratregion
5026456RH13228420345344058153440784Ratregion
5026500RH13245119143259860832598800Ratregion
5029141RH14367412443312854133128665Ratregion
5026698RH13319319945787488457875083Ratregion
5026758RH13341918146072035060720532Ratregion
5032273AW0498459945939876059398859Ratregion
5032329Copg2as142945936597159366400Ratregion
5027083STS-H2311716045743507257435232Ratregion
5029713AI55545118743052189530522341Ratregion
5035475AI40660816045877212458772284Ratregion
5027111GDB:131795414645195579551955941Ratregion
5027139A005W0915345050310950503262Ratregion
5029735BE10221520845902419459024402Ratregion
5032631RH13471919142597360325973794Ratregion
5032661RH13482920946028356560283774Ratregion
5032675RH13488020143052005030520251Ratregion
5034888AI41107313445787354557873679Ratregion
5034960AA80102116443334803433348198Ratregion
5027287AW22754814642931406329314209Ratregion
5027311AV0059169543358994233590037Ratregion
5032843RH13669824942928429429284547Ratregion
5035282BF38772015244042285340423004Ratregion
5030081BE11006315245936519059365342Ratregion
5032955RH13709418143494757434947755Ratregion
5025012AW55010813645178069051780826Ratregion
5027697WI-1479515046204024562040395Ratregion
5033025RH13731619846013535160135550Ratregion
5033093RH13756619543647304736473242Ratregion
5033123RH13768112145194339751943518Ratregion
5025240RH12755618242836796028368142Ratregion
502783306.MHAa81T_M13Rev.seq14043033158430331724Ratregion
5030467BF39786514345177263651772779Ratregion
5025312RH12783621844214200542142223Ratregion
5030681BI30178415445287830552878465Ratregion
5033503RH13906619642563161225631808Ratregion
5028358RH6611815345344395853444111Ratregion
5030927BF39945715945801443358014592Ratregion
5033807RH14019420243059004430590246Ratregion
5025806RH12974919842356110323561301Ratregion
5025934RH13025621446013207260132286Ratregion
5052045RH948089945767255957672658Ratregion
5051188RH13449020243354609933546301Ratregion
5053653RH14277327045967530159675571Ratregion
5055919RH14407823345015838950158622Ratregion
5056219RH14425218146016245460162635Ratregion
5054585RH14330929444045571040456004Ratregion
5054635RH14333719346013072260130915Ratregion
5059420AW53066815143326006133260212Ratregion
5057842BF38624717644731518847315364Ratregion
5054749RH14340314943285230232852451Ratregion
5058018BF38647515045997741759977567Ratregion
5058554BF39327824043327976133280001Ratregion
5058594BE10213915742461735024617507Ratregion
5055831RH14402713142460961024609741Ratregion
5055903RH14406910045139779651397896Ratregion
5055125RH14362017043279601832796188Ratregion
5056313RH14430610045741846857418568Ratregion
5056687RH14452224744685889646859143Ratregion
5058084AI07045121045685115456851364Ratregion
5058938BF39384114242567222225672364Ratregion
5059746BE09779019945939458159394780Ratregion
5059746BE09779019945938911959389318Ratregion
5052935RH14235916844183074041830908Ratregion
5052985RH14238818946072050760720696Ratregion
5053005RH14239915045853060158530751Ratregion
5053063RH14243223942513272425132963Ratregion
5059912BF40010516445308287653083040Ratregion
5058354BF41963419346052302160523214Ratregion
5049986RH13379619742509369225093889Ratregion
5049986RH13379619742507611025076307Ratregion
5052289MDB107115845027845150278609Ratregion
5058368BF41976518743673886836739055Ratregion
5059204BF38764017045869303258693202Ratregion
5050400RH13403519744496792744968117Ratregion
5059250BF38788015845899725058997408Ratregion
5059318BG37729512945857802058578149Ratregion
5057712BF38606316245154219951542361Ratregion
5052450Z3155712742344079323440920Ratregion
5053919RH14292630044539833345398633Ratregion
5054027RH14298813343354541933545552Ratregion
5054073RH14301510846182074061820848Ratregion
5051407AI38575210243499939734999499Ratregion
5054343RH14317019143030472630304917Ratregion
5054487RH14325318042597361625973796Ratregion
5053101RH14245410245818678058186882Ratregion
5053211RH14251715542991617529916330Ratregion
5053289RH14256223242583909225839324Ratregion
5050890RH13431719943338984133390041Ratregion
5041882RH12911318145926329059263471Ratregion
5040724RH12844721945814312758143336Ratregion
5043304RH12994916543578574535785910Ratregion
5043448RH13003119444633402146334214Ratregion
5041164RH12869918544601944746019632Ratregion
5045392RH13115218443054744630547630Ratregion
5041380RH12882421144731185147312062Ratregion
5041530RH12891015746012843660128593Ratregion
5044274RH13050818142853327728533458Ratregion
5044664RH13073320943198191431982123Ratregion
5044750RH13078220745899006558990272Ratregion
5044834RH13083020345877040658770609Ratregion
5046418RH13174119642845223628452432Ratregion
5044348RH13055119045941214359412333Ratregion
5045376RH13114219445787378357873977Ratregion
5047484RH13235420645299441152994617Ratregion
5047574RH13240619742844985828450603Ratregion
5045002RH13092719543418016734180571Ratregion
5045212RH13104818944404993944050128Ratregion
5047688RH13247121845256925852569476Ratregion
5048994RH13322521943202813132028350Ratregion
5045640RH13129418246183072961830911Ratregion
5047746RH13250520043607007436070274Ratregion
5049108RH13329021242851558928515801Ratregion
5049168RH13332419043259910532599295Ratregion
5045920RH13145519646217805162178247Ratregion
5049004RH13323119745905660159056798Ratregion
5041990RH12917521043647425836474468Ratregion
5042012RH12918819643051967430519870Ratregion
5047340RH13227119445027815550278349Ratregion
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5049654RH13360521843016160130161819Ratregion
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5503869LEP-38345767056957672217Ratregion
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5505003Wnt225044636694846367198Ratregion
5505163Lrrc494845743585557436803Ratregion
5506082UniSTS:498320116045027490850276068Ratregion
5506278G2054715345050310950503262Ratregion
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5506135UniSTS:4984417145159430951594380Ratregion
5506630ECD0020294644367803743678983Ratregion
5506636ECD0036191244368001243680924Ratregion
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5507417REN10227722944346671443466943Ratregion
5507419REN10227823644346691943467155Ratregion
5507115UniSTS:22458912642149344921493575Ratregion
5507315G4471411443628866136288775Ratregion
5499533stSG61151824444370522043705464Ratregion
5499535stSG611519123744370546943706706Ratregion
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5499531stSG611494109844367904443680142Ratregion
5499543AI85403213242597053825970670Ratregion
5500019UniSTS:23617110842947022629470334Ratregion
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5500242U6688866443316283533163499Ratregion
5500294D20S10048943663525836635347Ratregion
5500310GDB:1803505443258948532590378Ratregion
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5500428REN6225124544687725646877501Ratregion
5500430REN6397622444636804346368267Ratregion
5500432REN6445625344624861346248866Ratregion
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5500180MT348240144445596244456363Ratregion
5500336GDB:19474862143775860837759229Ratregion
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5500945MARC_9717-9718:996688547:130943500291635003225Ratregion
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5501335ECD2014223444597818045978414Ratregion
5505039Met7044581953945819609Ratregion
5501754MARC_11525-11526:1001518036:115845796634257967118Ratregion
5501679UniSTS:26567729344182910041829392Ratregion
5501818MARC_13931-13932:1007579490:149044371020443710694Ratregion
5505518UniSTS:1040810546072029760720402Ratregion
5505855UniSTS:4959549145416034554160436Ratregion
5505883Grm36542436503124365096Ratregion
5502684Asb413143351505733515188Ratregion
5506757G4521321245574503355745245Ratregion
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5507421REN10258525144352484743525098Ratregion
5507423REN10287525144358848343588734Ratregion
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5507427REN10315624444364621043646454Ratregion
5507429REN10323824744366816843668415Ratregion
5507431REN10324024944366862143668870Ratregion
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5502864Dlx6043498845234989250Ratregion
5502251AU04127717545837354958373724Ratregion
Position Markers

Flank 1: (D4Mgh1)
Rat AssemblyChrPosition (strand)Source
mRatBN7.2421,333,343 - 21,333,491 (+)MAPPER
Rnor_6.0418,222,187 - 18,222,332NCBI
Rnor_5.0418,184,531 - 18,184,676UniSTS
RGSC_v3.4417,617,956 - 17,618,102RGD
RGSC_v3.4417,617,957 - 17,618,102UniSTS
RGSC_v3.1417,617,956 - 17,618,102RGD
Celera416,853,169 - 16,853,313UniSTS
RH 3.4 Map4588.2UniSTS
RH 3.4 Map4588.2RGD
Cytogenetic Map4q12UniSTS
Peak: (D4Mgh14)
Rat AssemblyChrPosition (strand)Source
mRatBN7.2439,505,275 - 39,505,420 (+)MAPPER
Rnor_6.0437,685,175 - 37,685,319NCBI
Rnor_5.0437,534,124 - 37,534,268UniSTS
RGSC_v3.4436,592,628 - 36,592,773RGD
RGSC_v3.4436,592,629 - 36,592,773UniSTS
RGSC_v3.1436,711,169 - 36,711,313RGD
Celera434,949,819 - 34,949,963UniSTS
RH 3.4 Map4220.4UniSTS
RH 3.4 Map4220.4RGD
RH 2.0 Map4296.9RGD
SHRSP x BN Map421.52RGD
Cytogenetic Map4 RGD
Flank 2: (D4Rat22)
Rat AssemblyChrPosition (strand)Source
mRatBN7.2462,277,855 - 62,278,020 (+)MAPPER
Rnor_6.0461,038,901 - 61,039,065NCBI
Rnor_5.0460,769,721 - 60,769,885UniSTS
RGSC_v3.4460,974,346 - 60,974,511RGD
RGSC_v3.4460,974,347 - 60,974,511UniSTS
RGSC_v3.1461,250,477 - 61,250,641RGD
Celera457,345,999 - 57,346,163UniSTS
RH 3.4 Map4372.0RGD
RH 3.4 Map4372.0UniSTS
RH 2.0 Map4420.2RGD
SHRSP x BN Map432.92RGD
Cytogenetic Map4q22UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
61351Bp33Blood pressure QTL 330.0018arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)4127716890Rat
61408Scl23Serum cholesterol level QTL 230.0005blood HDL phospholipid amount (VT:0010504)serum high density lipoprotein phospholipid level (CMO:0001567)4127716890Rat
724557Plsm1Polydactyly-luxate syndrome (PLS) morphotypes QTL 10.0003forelimb integrity trait (VT:0010562)front foot phalanges count (CMO:0001947)4127716890Rat
1641905Colcr1Colorectal carcinoma resistance QTL 14.30.0003intestine integrity trait (VT:0010554)benign colorectal tumor surface area measurement (CMO:0001799)4129494328Rat
61333Gluco16Glucose level QTL 164.30.00001adipocyte glucose uptake trait (VT:0004185)absolute change in adipocyte glucose uptake (CMO:0000873)4130372989Rat
9589097Slep11Serum leptin concentration QTL 115.090.001blood leptin amount (VT:0005667)plasma leptin level (CMO:0000781)4131934116Rat
8552903Pigfal2Plasma insulin-like growth factor 1 level QTL 27.3blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)4131934116Rat
9589046Scfw2Subcutaneous fat weight QTL 25.540.001subcutaneous adipose mass (VT:1000472)abdominal subcutaneous fat pad weight (CMO:0002069)4131934116Rat
9590100Sffal4Serum free fatty acids level QTL 47.360.05blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)4131934116Rat
738021Hcar13Hepatocarcinoma resistance QTL 134.3liver integrity trait (VT:0010547)liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)4132584199Rat
1357341Gluco5Glucose level QTL 56.4adipocyte free fatty acid secretion trait (VT:0010465)absolute change in adipocyte free fatty acid secretion per unit volume (CMO:0001446)4133250345Rat
1357343Gluco4Glucose level QTL 40.00002adipocyte glucose uptake trait (VT:0004185)adipocyte maximal glucose uptake to basal glucose uptake ratio (CMO:0000874)4133250345Rat
61415Eae11Experimental allergic encephalomyelitis QTL 112.9nervous system integrity trait (VT:0010566)post-insult time to onset of experimental autoimmune encephalomyelitis (CMO:0001422)4139505420Rat
634323Hc2Hypercalciuria QTL 22.15urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)421079645210796Rat
619616Bp79Blood pressure QTL 790.0292arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)4521460278882945Rat
2303168Bp330Blood pressure QTL 3304.250.017arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)45214602146446691Rat
2302371Stl22Serum triglyceride level QTL 225.15blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)4521829457114705Rat
1358203Stl19Serum triglyceride level QTL 192.80.002blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)4521829465958103Rat
1358201Gluco12Glucose level QTL121.6adipocyte glucose uptake trait (VT:0004185)adipocyte maximal glucose uptake (CMO:0000870)4521839229593287Rat
631642Stl2Serum triglyceride level QTL 23.3blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)4521917856647776Rat
631209Bw2Body weight QTL24.2retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)4994088544463908Rat
1300141Bp178Blood pressure QTL 178arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)41002490139524530Rat
6478724Anxrr35Anxiety related response QTL 350.00449defecation behavior trait (VT:0010462)defecation measurement (CMO:0000997)41008408955084089Rat
6478766Anxrr47Anxiety related response QTL 470.09637locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)41008408955084089Rat
6478769Anxrr48Anxiety related response QTL 480.02514locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)41008408955084089Rat
8694374Bw155Body weight QTL 1553.390.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)41008408955084089Rat
9590304Scort17Serum corticosterone level QTL 174.960.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)41008408955084089Rat
8552906Pigfal3Plasma insulin-like growth factor 1 level QTL 3blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)41008408955084089Rat
631261Tcas3Tongue tumor susceptibility QTL 36.88tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)41081417091360527Rat
2316958Gluco58Glucose level QTL 5810blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)411320076180699135Rat
2303585Bw86Body weight QTL 864body mass (VT:0001259)body weight (CMO:0000012)41467806559678065Rat
2313401Anxrr27Anxiety related response QTL 27aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)41793350862933508Rat
70222Eae2Experimental allergic encephalomyelitis QTL 24.3nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)42133334339505420Rat
1354665Stl10Serum triglyceride level QTL 103.57blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)42133334344463908Rat
61412Pia2Pristane induced arthritis QTL 23.9joint integrity trait (VT:0010548)post-insult time to onset of experimental arthritis (CMO:0001450)42133334362278020Rat
8552803Bw144Body weight QTL 14416body mass (VT:0001259)change in body weight to body weight ratio (CMO:0002216)42271068534430484Rat
6909122Insul22Insulin level QTL 224.63blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)42690728575585128Rat
6909128Pancm4Pancreatic morphology QTL 411.35pancreas mass (VT:0010144)pancreas wet weight (CMO:0000626)42690728575585128Rat
8655906Rf60Renal function QTL 603.8blood creatinine amount (VT:0005328)creatinine clearance (CMO:0000765)42949419581006281Rat
12798520Anxrr55Anxiety related response QTL 554.450.01locomotor behavior trait (VT:0001392)number of rearing movements with lid-pushing in an experimental apparatus (CMO:0002715)432583980114627242Rat
11530004Niddm71Non-insulin dependent diabetes mellitus QTL 710.001blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)43258419952754138Rat
8655949Rf62Renal function QTL 6222blood urea nitrogen amount (VT:0005265)plasma urea nitrogen level (CMO:0000586)43443011944463908Rat
8552782Vie1Viral induced encephalitis QTL 126.4brain integrity trait (VT:0010579)encephalitis incidence/prevalence measurement (CMO:0002361)43443048482490359Rat
8552801Bw143Body weight QTL 1437.3body mass (VT:0001259)change in body weight to body weight ratio (CMO:0002216)43443048482490359Rat
8552809Vie5Viral induced encephalitis QTL 525.3brain integrity trait (VT:0010579)encephalitis incidence/prevalence measurement (CMO:0002361)43443048482490359Rat
8655961Kidm43Kidney mass QTL 4318kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)436303261103194984Rat
4889511Gluco61Glucose level QTL 614.70.001blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)43717795040869000Rat
2290374Gluco32Glucose level QTL 326.27blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)43717795044463908Rat
1300156Bp179Blood pressure QTL 1792.85arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)43846577439524530Rat
1358352Srcrt3Stress Responsive Cort QTL 32.29blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)438465774146803430Rat
61475Aia2Adjuvant induced arthritis QTL 25.8joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)43950527573892441Rat
1331807Rf31Renal function QTL 312.988urine potassium amount (VT:0010539)urine potassium level (CMO:0000128)43952426474726312Rat
1300139Hrtrt6Heart rate QTL 62.85heart pumping trait (VT:2000009)heart rate (CMO:0000002)439524264116179656Rat
61445Strs3Sensitivity to stroke QTL 33cerebrum integrity trait (VT:0010549)post-insult time to onset of cerebrovascular lesion (CMO:0002343)44043338885433388Rat
8694439Bw168Body weight QTL 1689.570.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)44043341485433414Rat
6893678Bw108Body weight QTL 1082.60.006body mass (VT:0001259)body weight (CMO:0000012)44345797688457976Rat
1576305Emca6Estrogen-induced mammary cancer QTL 65.8mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)444463720155883716Rat
1354612Foco1Food consumption QTL 18.87eating behavior trait (VT:0001431)food intake rate (CMO:0000427)444463908148090542Rat
1354660Salc1Saline consumption QTL 111.26drinking behavior trait (VT:0001422)saline drink intake rate (CMO:0001627)444463908148090542Rat
2312567Glom19Glomerulus QTL 191.90.006kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)445456990146803430Rat
10450818Scl76Serum cholesterol level QTL 763.60.01blood VLDL cholesterol amount (VT:0005144)blood high density lipoprotein cholesterol level (CMO:0000052)44917811657114705Rat
10450821Scl77Serum cholesterol level QTL 774.10.01blood VLDL cholesterol amount (VT:0005144)blood high density lipoprotein cholesterol level (CMO:0000052)44917811657114705Rat
10450825Scl78Serum cholesterol level QTL 783.70.01blood VLDL cholesterol amount (VT:0005144)blood low density lipoprotein cholesterol level (CMO:0000053)44917811657114705Rat
1298082Stresp4Stress response QTL 4blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)450119848146803430Rat
4889969Bss96Bone structure and strength QTL 964.9tibia size trait (VT:0100001)tibia cortical bone volume (CMO:0001725)45664777678882945Rat
4889972Bss97Bone structure and strength QTL 975.6tibia size trait (VT:0100001)tibia total bone volume (CMO:0001724)45664777678882945Rat
5685009Bmd86Bone mineral density QTL 863.7tibia mineral mass (VT:1000283)bone mineral density (CMO:0001226)45664777678882945Rat
5685012Bmd87Bone mineral density QTL 875.1tibia mineral mass (VT:1000283)bone mineral content (CMO:0001554)45664777678882945Rat
70200Alc18Alcohol consumption QTL 189.2drinking behavior trait (VT:0001422)ethanol intake volume to total fluid intake volume ratio (CMO:0001591)456647873149491524Rat
1641833Alc21Alcohol consumption QTL 218.60.0001drinking behavior trait (VT:0001422)ethanol drink intake rate (CMO:0001407)456698790126192555Rat
631546Bp86Blood pressure QTL 863.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)45711443291360801Rat
634311Sach7Saccharin preference QTL 7taste sensitivity trait (VT:0001986)saccharin intake volume to total fluid intake volume ratio (CMO:0001601)457114432102114432Rat
61336Bp21Blood pressure QTL 214.6arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)45711470578881294Rat
1358363Sradr3Stress Responsive Adrenal Weight QTL 36.19adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)457486946102486946Rat
1558651Swd3Spike wave discharge measurement QTL 34.620.000024brain electrophysiology trait (VT:0010557)brain spike-and-wave discharge frequency (CMO:0001742)45843213392991462Rat
631671Iddm11Insulin dependent diabetes mellitus QTL 113.60.0012blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)45863587778886137Rat
738009Sach4Saccharine consumption QTL 44.90.000016consumption behavior trait (VT:0002069)saccharin intake volume to total fluid intake volume ratio (CMO:0001601)459948935154902892Rat
738016Alc16Alcohol consumption QTL 163.60.00015consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)459948935154902892Rat
738031Alc14Alcohol consumption QTL 147.60.00003consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)459948935154902892Rat
1578657Bss12Bone structure and strength QTL 128.9femur morphology trait (VT:0000559)femoral neck cross-sectional area (CMO:0001697)460220938105220938Rat
1578658Bss13Bone structure and strength QTL 138femur strength trait (VT:0010010)femoral neck polar moment of inertia (CMO:0001670)460220938105220938Rat
2300179Bmd50Bone mineral density QTL 505.90.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)460928534105928534Rat
1549843Bw53Body weight QTL 530.0001body mass (VT:0001259)body weight gain (CMO:0000420)461697658103194791Rat
1549839Bw52Body weight QTL 520.0001body mass (VT:0001259)body weight gain (CMO:0000420)461697658115089733Rat
61418Pia5Pristane induced arthritis QTL 54.5joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)462277855128289560Rat


Additional Information

Database Acc Id Source(s)
NCBI Gene Pia2

RGD Curation Notes
Note Type Note Reference
qtl_cross_type intercross  
qtl_disease the disease susceptibility is derived from E3 strain 61089
qtl_gene 98 known and 52 novel genes were found in an analysis based on PubMed and OMIM data 2307198
qtl_gene whole genome analysis using PGMapper revealed Irf5, Pon1 as RA associated genes and Irf5 as RA associated polymorphism either in coding or regulatory region 2300074
qtl_general associates with the arthritis onset 61089
qtl_general significant in females appears to control delayed disease onset in DA rats 61089