Bmd87 QTL Report (Rattus norvegicus) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Behavioral & Substance Use Disorder Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
QTL Registration

QTL: Bmd87 (Bone mineral density QTL 87) Rattus norvegicus

Symbol: Bmd87
Name: Bone mineral density QTL 87
RGD ID: 5685012
Trait: tibia mineral mass   (VT:1000283)    
Measurement Type: bone mineral content   (CMO:0001554)    
LOD Score: 5.1
P Value: Not Available
Variance: Not Available
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr8435,113,290 - 80,113,290RGD_MAPPER_PIPELINE
mRatBN7.2456,647,776 - 78,882,945RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.0455,324,857 - 79,575,658RGD_MAPPER_PIPELINERnor_6.0
Rnor_5.0455,067,578 - 144,249,450RGDRnor_5.0
RGSC_v3.4454,828,069 - 78,039,637RGDRGSC_v3.4
Cross Type: Not Available
Strains Crossed: GK/KyoSwe F344/DuCrlSwe 



Experimental Data Annotations    Click to see Annotation Detail View

Clinical Measurement
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
Bmd87Ratbone mineral content  IDA 5684953update to tibia specific termRGD 

Experimental Condition
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
Bmd87Ratcontrol condition  IDA 5684953 RGD 

Measurement Method
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
Bmd87Ratdual-energy x-ray absorptiometry  IDA 5684953 RGD 

Rat Strain
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
Bmd87RatF344/DuCrlSwe  IEA 5684953 RGD 
Bmd87RatGK/KyoSwe  IEA 5684953 RGD 

Vertebrate Trait
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
Bmd87Rattibia mineral mass  IDA 5684953 RGD 

Disease Annotations     Click to see Annotation Detail View
osteoporosis  (IAGP)

Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

Experimental Condition

Measurement Method

Vertebrate Trait

Rat Strain
F344/DuCrlSwe  (IEA)
GK/KyoSwe  (IEA)

References

References - curated
# Reference Title Reference Citation
1. Identification of candidate gene regions in the rat by co-localization of QTLs for bone density, size, structure and strength. Lagerholm S, etal., PLoS One. 2011;6(7):e22462. Epub 2011 Jul 27.

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
619858Grm8glutamate metabotropic receptor 845580576256731690Rat
1560157Zfp800zinc finger protein 80045679832656849766Rat
41034677LOC120102248uncharacterized LOC12010224845680319656805686Rat
1587791H3f3cl2H3 histone, family 3C like 245684980056862528Rat
40930852LOC120102657U1 spliceosomal RNA45695629256956455Rat
2319954Gcc1GRIP and coiled-coil domain containing 145703081757042682Rat
621278Arf5ARF GTPase 545703852157041447Rat
1303047Fscn3fascin actin-bundling protein 345704279757052224Rat
620433Pax4paired box 445705845357065995Rat
631340Snd1staphylococcal nuclease and tudor domain containing 145709520557494501Rat
628724LipogeninLipogenin45735629857357553Rat
1560026Lrrc4leucine rich repeat containing 445743351857437114Rat
41397929LOC120102250uncharacterized LOC12010225045758550557626664Rat
2325456Mir129-1microRNA 129-145762429557624366Rat
3000Lepleptin45766112757675262Rat
1311336Rbm28RNA binding motif protein 2845772294657761935Rat
1559885Prrt4proline-rich transmembrane protein 445776605457777087Rat
1311108Impdh1inosine monophosphate dehydrogenase 145780184257817434Rat
41279683LOC120102707small nucleolar RNA SNORA1745783546757835618Rat
2319900Hilpdahypoxia inducible lipid droplet-associated45787108857874048Rat
1561814Garin1agolgi associated RAB2 interactor 1A45788001957890824Rat
9389926LOC103692085uncharacterized LOC10369208545788614857889290Rat
1564147Garin1bgolgi associated RAB2 interactor 1B45791518457938593Rat
620383Calucalumenin45794908657976589Rat
621033Opn1swopsin 1, short wave sensitive45797731757980457Rat
11403251Trnap-agg6transfer RNA proline (anticodon AGG) 645798962657989697Rat
1564459Ccdc136coiled-coil domain containing 13645799782558027598Rat
1308807Flncfilamin C45803408858061882Rat
621552Atp6v1fATPase H+ transporting V1 subunit F45806766658070628Rat
9472094Spmip1sperm microtubule inner protein 145807157458073496Rat
1561119Kcpkielin cysteine rich BMP regulator45808285658118170Rat
1310447Irf5interferon regulatory factor 545812757758140665Rat
1308938Tnpo3transportin 345814295458220365Rat
7563828LOC102552812uncharacterized LOC10255281245827229058276271Rat
41373976Snrpg-ps6small nuclear ribonucleoprotein polypeptide G, pseudogene 645830406958304945Rat
1560915Tspan33tetraspanin 3345830537858330013Rat
41285462LOC120102481uncharacterized LOC12010248145830681058311531Rat
3726Smosmoothened, frizzled class receptor45834362658373823Rat
41009975LOC120102483uncharacterized LOC12010248345837333558381144Rat
1564895Ahcyl2adenosylhomocysteinase-like 245838129058531061Rat
1588437Strip2striatin interacting protein 245853603458578279Rat
7590867Pgk1-ps1phosphoglycerate kinase 1, pseudogene 145857843058580694Rat
9298384Smkr1-ps1small lysine-rich protein 1, pseudogene 145859536358609149Rat
41058543LOC120102484uncharacterized LOC12010248445863484558638314Rat
1304603Nrf1nuclear respiratory factor 145866493258772328Rat
4888616Mir182microRNA 18245878481858784879Rat
2325582Mir96microRNA 9645878841158788516Rat
2325560Mir183microRNA 18345878861458788723Rat
4888613Mir3553microRNA 355345878861758788722Rat
2319288Ube2hubiquitin-conjugating enzyme E2H45883467458930156Rat
41334655LOC120102640small nucleolar RNA SNORA3245895139358951489Rat
1561099Zc3hc1zinc finger, C3HC-type containing 145898998959011925Rat
1309792Klhdc10kelch domain containing 1045902130059079118Rat
11503662LOC108350685uncharacterized LOC10835068545908451759086860Rat
1309682Tmem209transmembrane protein 20945910294359128636Rat
1559502Ssmem1serine-rich single-pass membrane protein 145912873059139029Rat
1305563Cpa2carboxypeptidase A245916035759183677Rat
41176579LOC120102251uncharacterized LOC12010225145916618959197472Rat
1563619Cpa4carboxypeptidase A445918828459212255Rat
7689603LOC102553416uncharacterized LOC10255341645920892859229667Rat
1303098Cpa5carboxypeptidase A545922975459249503Rat
2388Cpa1carboxypeptidase A145925741759263544Rat
1562034Cep41centrosomal protein 4145927121859312343Rat
1594589Mestmesoderm specific transcript45935444559364919Rat
1566215Copg2COPI coat complex subunit gamma 245936608659501591Rat
1584118Tsga13testis specific, 1345950177359522925Rat
9267310LOC103692110interferon-induced transmembrane protein 2 pseudogene45954898259549845Rat
1306012Klf14KLF transcription factor 1445955401159556933Rat
4888604Mir3556amicroRNA 3556a45965059659650713Rat
2325393Mir29amicroRNA 29a45965060859650695Rat
4888577Mir3587microRNA 358745965096059651022Rat
2325591Mir29b1microRNA 29b-145965098759651067Rat
40935195Trnad-auctransfer RNA aspartic acid (anticodon AUC)45978748459787557Rat
620076Mkln1muskelin 145981591260124047Rat
41397436LOC120102487uncharacterized LOC12010248745983240159845825Rat
41196392LOC120102488uncharacterized LOC12010248845987710159880952Rat
41038068LOC120102486uncharacterized LOC12010248645996954160002431Rat
11406136Vamp5lvesicle-associated membrane protein 5 like45997441259990317Rat
9410961Ppid-ps6peptidylprolyl isomerase D, pseudogene 646007650560077634Rat
621878Podxlpodocalyxin-like46013512460181829Rat
7632355Dppa4-ps8developmental pluripotency-associated 4, pseudogene 846014565860148378Rat
1561636Rpl38l1ribosomal protein L38 like 146029635860296687Rat
1586093Eif1-ps3eukaryotic translation initiation factor 1, pseudogene 346048509460485620Rat
7643646LOC102549088uncharacterized LOC10254908846061944960651830Rat
15974441700012A03RiklRIKEN cDNA 1700012A03 gene like46064478960652324Rat
11485345LOC108350687uncharacterized LOC10835068746069840160709474Rat
1308074Plxna4plexin A446072024661162206Rat
11439332LOC108350688uncharacterized LOC10835068846073321760817304Rat
1563055Elob-ps10elongin B, pseudogene 1046133418761334902Rat
1310325Chchd3coiled-coil-helix-coiled-coil-helix domain containing 346136035261616850Rat
1565435Hmgb1-ps5high-mobility group box 1, pseudogene 546180596461806669Rat
621791Exoc4exocyst complex component 446180770662584316Rat
41082831LOC120102446FAD-linked sulfhydryl oxidase ALR-like46209998762100799Rat
1594818LOC689234similar to catechol-O-methyltransferase domain containing 146261638962632132Rat
1308226Lrgukleucine-rich repeats and guanylate kinase domain containing46264722262770268Rat
1308985Slc35b4solute carrier family 35 member B446277699362799013Rat
1594775Ndufab1-ps2NADH:ubiquinone oxidoreductase subunit AB1, pseudogene 246287878162879361Rat
2092Akr1b1aldo-keto reductase family 1 member B146293203362946126Rat
708475Akr1b15aldo-keto reductase family 1 member B1546299724163009815Rat
1308277Akr1b10aldo-keto reductase family 1 member B1046303845963060336Rat
620257Akr1b7aldo-keto reductase family 1, member B746305356063100934Rat
6497379Myl6-ps4myosin light chain 6, pseudogene 446306171263063832Rat
735018Bpgmbisphosphoglycerate mutase46313973063168581Rat
2256Cald1caldesmon 146326578163446938Rat
41095347LOC120102254uncharacterized LOC12010225446336104963362181Rat
1561995Agbl3AGBL carboxypeptidase 346344878963535538Rat
1549759Tmem140transmembrane protein 14046353647763547478Rat
1563238Cyrencell cycle regulator of NHEJ46354731163553394Rat
1306697Wdr91WD repeat domain 9146355436463591733Rat
1562852Stra8stimulated by retinoic acid 846360144363624777Rat
1565367Slc23a4solute carrier family 23 member 446363129263679687Rat
9074622LOC103692099uncharacterized LOC10369209946364549963654542Rat
1310318Cnot4CCR4-NOT transcription complex, subunit 446371277063814355Rat
7739309LOC102553126uncharacterized LOC10255312646381374863829271Rat
1309413Nup205nucleoporin 20546385493463920852Rat
1591053Stmp1short transmembrane mitochondrial protein 146392752363937355Rat
1359715Slc13a4solute carrier family 13 member 446394336963988852Rat
1308013Fam180afamily with sequence similarity 180, member A46399286764008047Rat
2319013Supt4h1-ps2SPT4 homolog, DSIF elongation factor subunit, pseudogene 246409466264097040Rat
619806Mtpnmyotrophin46415927364186686Rat
41021819LOC120102764U2 spliceosomal RNA46456265364562792Rat
41309461LOC120102671small nucleolar RNA SNORA1746458071464580842Rat
1588434Rhebl1-ps1RHEB like 1, pseudogene 146481823964819039Rat
7733981LOC102554507uncharacterized LOC10255450746500661265016735Rat
41195642LOC120102763U2 spliceosomal RNA46500716565007263Rat
620023Chrm2cholinergic receptor, muscarinic 246501540865149104Rat
2325414Mir490microRNA 49046504754865047631Rat
3444Ptnpleiotrophin46529373165375572Rat
735049Dgkidiacylglycerol kinase, iota46541087865872733Rat
1306040Creb3l2cAMP responsive element binding protein 3-like 246590757066112078Rat
620752Akr1d1aldo-keto reductase family 1, member D146615424666187505Rat
41237666Hmgb1-ps18high-mobility group box 1, pseudogene 1846649212666492794Rat
1560596Trim24tripartite motif-containing 2446656734266692029Rat
1566053SvoplSVOP like46669755066751699Rat
1305055Atp6v0a4ATPase H+ transporting V0 subunit a446676016366842126Rat
1588740Tmem213transmembrane protein 21346682504066831070Rat
1306271Kiaa1549KIAA1549 homolog46684067466968407Rat
1309236Zc3hav1lZC3HAV1 like46699419267003207Rat
628694Zc3hav1zinc finger CCCH-type containing, antiviral 146701212967062428Rat
1561363Ift56intraflagellar transport 5646709062267154707Rat
11448653LOC108350693high mobility group protein B1 pseudogene46709136867092710Rat
1310722Ubn2ubinuclein 246716527867251562Rat
11451624Trnar-ccu2transfer RNA arginine (anticodon CCU) 246727344867273520Rat
1559476Fmc1formation of mitochondrial complex V assembly factor 146727410467282140Rat
1308651Luc7l2LUC7 pre-mRNA splicing factor like 246728759367347986Rat
9320161LOC103692107small nuclear ribonucleoprotein E pseudogene46732695167328859Rat
41372108LOC120102490insulin-induced gene 1 protein-like46733039967331371Rat
1587495Klrg2killer cell lectin like receptor G246736021667374867Rat
1565373Clec2lC-type lectin domain family 2, member L46739211867414539Rat
1309349Hipk2homeodomain interacting protein kinase 246743932767619223Rat
3826Tbxas1thromboxane A synthase 146766496367837096Rat
41142180LOC120102680small nucleolar RNA SNORA1746776730567767435Rat
1308628Parp12poly (ADP-ribose) polymerase family, member 1246782654867885356Rat
1592650Kdm7alysine demethylase 7A46789940767974264Rat
41161250Rnu6-604RNA, U6 small nuclear 60446803216868032274Rat
1583604Chmp4bl1chromatin modifying protein 4B-like 146804974268050791Rat
1310346Slc37a3solute carrier family 37, member 346810931468153590Rat
1565263Rab19RAB19, member RAS oncogene family46815715968166889Rat
1303251Mkrn1makorin ring finger protein 146817590868197216Rat
40962184LOC120102609small nucleolar RNA SNORA7146819917868199301Rat
1306142Dennd2aDENN domain containing 2A46823301668332235Rat
7643066Srsf3-ps6serine and arginine rich splicing factor 3, pseudogene 646834229268343400Rat
1311058Adck2aarF domain containing kinase 246834885368362725Rat
7626918Tmsb10-ps5thymosin, beta 10, pseudogene 546836299068367488Rat
1308130Ndufb2NADH:ubiquinone oxidoreductase subunit B246836752668374609Rat
619908BrafB-Raf proto-oncogene, serine/threonine kinase46837548468510652Rat
41225554Rpl26-ps11ribosomal protein L26, pseudogene 1146839090368395785Rat
7666339Fth1-ps1ferritin heavy chain 1, pseudogene 146843185768436899Rat
1309217Mrps33mitochondrial ribosomal protein S3346859672968605547Rat
40994299LOC120102257uncharacterized LOC12010225746861471568622669Rat
9116769LOC103692103uncharacterized LOC10369210346862670668655436Rat
1585938Tmem178btransmembrane protein 178B46865942569035690Rat
7574135LOC102555151uncharacterized LOC10255515146892487368939499Rat
1562046Agkacylglycerol kinase46911485069193989Rat
1563986Dennd11DENN domain containing 1146919716169266013Rat
1587197Wee2WEE2 oocyte meiosis inhibiting kinase46923904369261576Rat
3760Ssbp1single stranded DNA binding protein 146926602469276135Rat
1560602Tas2r137taste receptor, type 2, member 13746927927669286935Rat
1561194Tas2r108taste receptor, type 2, member 10846928766769288581Rat
1311823Prss37serine protease 3746932297769334555Rat
1333433Or9a7-ps1olfactory receptor family 9 subfamily A member 7, pseudogene 146936072369361664Rat
1332737Or9a4olfactory receptor family 9 subfamily A member 446940160669402550Rat
1584755Clec5aC-type lectin domain containing 5A46940712569416872Rat
1560649Tas2r138taste receptor, type 2, member 13846942834469429339Rat
9369725Mgammaltase-glucoamylase46944162669602068Rat
1308368Mgam2maltase-glucoamylase 246962402469715782Rat
1564286Moxd2monooxygenase, DBH-like 246972469369733188Rat
1303054Prss58serine protease 5846975264669757306Rat
1302947Prss59protease, serine 5946976420669785111Rat
1563848Prss3bl1protease, serine, 3B like 146979766169803606Rat
7085851810009J06RiklRIKEN cDNA 1810009J06 gene like46981510769826206Rat
6496223Poldip2-ps1DNA polymerase delta interacting protein 2, pseudogene 146985630069858239Rat
708437Prss3bprotease, serine, 3B46987181069875518Rat
6493911Trbvl1T cell receptor beta variable like 147003688070038079Rat
1311446Prss3serine protease 347020308870206562Rat
41142645Cdc42-ps1cell division cycle 42, pseudogene 147020715770207873Rat
1560283Try5trypsin 547021376070217034Rat
1359400Try10trypsin 1047024431470247819Rat
3418Prss2protease, serine, 247027830470283385Rat
1598148Prss2-ps1protease, serine, 2, pseudogene 147031769070320752Rat
7618053LOC102554637anionic trypsin-2-like47033167370335768Rat
1597830Prss2l1protease, serine, 2 like 147034433870348069Rat
3417Prss1serine protease 147036458970367792Rat
41021783LOC120102259uncharacterized LOC12010225947042230970428425Rat
41226242LOC120102568U6 spliceosomal RNA47044930770449413Rat
1306163Ephb6Eph receptor B647049197370507230Rat
69335Trpv6transient receptor potential cation channel, subfamily V, member 647050734770523013Rat
620636Trpv5transient receptor potential cation channel, subfamily V, member 547053643270562743Rat
1595510Llcfc1LLLL and CFNLAS motif containing 147056620670567592Rat
1565470KelKell metallo-endopeptidase (Kell blood group)47056824170585666Rat
2323329Ndufa2-ps2NADH:ubiquinone oxidoreductase subunit A2, pseudogene 247060065270601022Rat
1562066Or9a2olfactory receptor family 9 subfamily A member 247067145170672395Rat
2323279Dtl-ps1denticleless E3 ubiquitin protein ligase, pseudogene 147075251370753615Rat
70946Pipprolactin induced protein47078762770791921Rat
620869Sval2seminal vesicle antigen-like 247080936670813330Rat
620867Sval1seminal vesicle antigen-like 147084522870856192Rat
1595436Tas2r139taste receptor, type 2, member 13947098528070986239Rat
1562314Tas2r144taste receptor, type 2, member 14447108618271087141Rat
735188Gstk1glutathione S-transferase kappa 147111897971123298Rat
2321500Prdx1-ps1peroxiredoxin 1, pseudogene 147114152971143722Rat
1594187Tmem139transmembrane protein 13947114707271149151Rat
69274Casp2caspase 247114963271167388Rat
41054799LOC120102741small nucleolar RNA SNORD8847116051571160603Rat
2360Clcn1chloride voltage-gated channel 147117194971201483Rat
1560653Fam131bfamily with sequence similarity 131, member B47120103771210292Rat
41384154LOC120102260uncharacterized LOC12010226047120915971219286Rat
620698Zyxzyxin47123676771246553Rat
1304680Epha1Eph receptor A147124640971260920Rat
41267017LOC120102261uncharacterized LOC12010226147126100871284951Rat
1566290Tas2r143taste receptor, type 2, member 14347128785771288741Rat
1561078Tas2r135taste receptor, type 2, member 13547129291271293877Rat
727853Tas2r126taste receptor, type 2, member 12647133382171334747Rat
1334194Or2r11olfactory receptor family 2 subfamily R member 1147136649071367431Rat
1333188Or2r3olfactory receptor family 2 subfamily R member 347137786971378810Rat
1333811Or2r3bolfactory receptor family 2 subfamily R member 3B47138952671390464Rat
1333381Or10ac1olfactory receptor family 10 subfamily AC member 147145036371451316Rat
1359405Fam115efamily with sequence similarity 115, member E47151027871524582Rat
1591778Tcaf2cTRPM8 channel associated factor 2C47155370071567820Rat
1565474Tcaf1TRPM8 channel-associated factor 147158967471639274Rat
1334371Or2f5-ps1olfactory receptor family 2 subfamily F member 5, pseudogene 147166245671662897Rat
11498065LOC10835080840S ribosomal protein S23 pseudogene47167471371675154Rat
1332594Or2f1olfactory receptor family 2 subfamily F member 147168893671689889Rat
1333677Or2f1bolfactory receptor family 2 subfamily F member 1B47170732671708276Rat
1333950Or2f2olfactory receptor family 2 subfamily F member 247174019371741149Rat
41357395LOC120102713small nucleolar RNA SNORA1747175492771755060Rat
1333504Or13m2olfactory receptor family 13 subfamily M member 247175974771760682Rat
1333975Or2q1olfactory receptor family 2 subfamily Q member 147177536871776300Rat
41399876LOC120102605U6 spliceosomal RNA47179492871795029Rat
1333367Or6b1olfactory receptor family 6 subfamily B member 147179998271800917Rat
1334415Or2a5olfactory receptor family 2 subfamily A member 547185608471857016Rat
1332716Or2a25olfactory receptor family 2 subfamily A member 2547187857871879519Rat
1333772Or2a12-ps1olfactory receptor family 2 subfamily A member 12, pseudogene 147189871971899655Rat
1333327Olr815-psolfactory receptor pseudogene 81547190616971906509Rat
1333098Or2a14olfactory receptor family 2 subfamily A member 1447194234371943275Rat
1587195Or2a52olfactory receptor family 2 subfamily A member 5247196511871966047Rat
1334209Or2a7olfactory receptor family 2 subfamily A member 747197902671979958Rat
40956713LOC120102160uncharacterized LOC12010216047198640571989140Rat
1332872Or2a51olfactory receptor family 2 subfamily A member 5147201281972013760Rat
11419404LOC108350809glyceraldehyde-3-phosphate dehydrogenase pseudogene47201417272015171Rat
1333011Or2a20olfactory receptor family 2 subfamily A member 2047203190972032871Rat
1334159Or2a57olfactory receptor family 2 subfamily A member 5747204632872047290Rat
7517929LOC102548553uncharacterized LOC10254855347208172272088278Rat
620718Arhgef5Rho guanine nucleotide exchange factor 547208720572112316Rat
1563929NoboxNOBOX oogenesis homeobox47212893172134436Rat
1589408Tpk1thiamin pyrophosphokinase 147217013472557707Rat
11481974LOC108350700uncharacterized LOC10835070047224919372293064Rat
41181679LOC120102665small nucleolar RNA SNORA1747278134972781478Rat
1587194St13-ps9ST13, Hsp70 interacting protein, pseudogene 947393531073937677Rat
41128409LOC120102161uncharacterized LOC12010216147406270374072374Rat
1307076Cntnap2contactin associated protein 247410945576366434Rat
41075400Trnav-aac34transfer RNA valine (anticodon AAC) 3447472882274728894Rat
7558071LOC102549191uncharacterized LOC10254919147501451575018378Rat
9287263LOC103692120uncharacterized LOC10369212047521592875218753Rat
40926761LOC120102681small nucleolar RNA SNORA1747557598075576108Rat
7580004LOC102549132uncharacterized LOC10254913247591043575915630Rat
2322482Snrpb-ps2small nuclear ribonucleoprotein polypeptides B and B1, pseudogene 247649790576498598Rat
1308157Cul1cullin 147655195276625830Rat
1595860Ezh2enhancer of zeste 2 polycomb repressive complex 2 subunit47662439976687362Rat
619835Pdia4protein disulfide isomerase family A, member 447680319876822245Rat
2293500Zfp786zinc finger protein 78647682238376840943Rat
1562129Zfp398zinc finger protein 39847684967276881075Rat
1306278Zfp282zinc finger protein 28247688499676910250Rat
1307836Zfp212Zinc finger protein 21247692363876936076Rat
1304879Zfp956zinc finger protein 95647694323976967238Rat
9367833LOC103692140ATP synthase subunit delta, mitochondrial pseudogene47694416876946742Rat
11410744Trnac-gca1transfer RNA cysteine (anticodon GCA) 147698021376980284Rat
1566056Zfp777zinc finger protein 77747701637777044008Rat
1306209Zfp746zinc finger protein 74647705500877078968Rat
11470191Trnac-gca2transfer RNA cysteine (anticodon GCA) 247712214477122215Rat
11469937Trnac-gca3transfer RNA cysteine (anticodon GCA) 347712755777127628Rat
11368266Trnac-gca4transfer RNA cysteine (anticodon GCA) 447712852177128592Rat
11383953Trnac-gca5transfer RNA cysteine (anticodon GCA) 547713610077136171Rat
11445921Trnac-gca6transfer RNA cysteine (anticodon GCA) 647713711577137186Rat
11466918Trnac-gca7transfer RNA cysteine (anticodon GCA) 747714011377140184Rat
11391872Trnac-gca9transfer RNA cysteine (anticodon GCA) 947716356377163634Rat
11491518Trnac-gca10transfer RNA cysteine (anticodon GCA) 1047717826077178331Rat
11515722Trnac-gca11transfer RNA cysteine (anticodon GCA) 1147718033477180405Rat
11490908Trnac-gca12transfer RNA cysteine (anticodon GCA) 1247718288577182956Rat
11462536Trnac-gca13transfer RNA cysteine (anticodon GCA) 1347719026477190335Rat
11424934LOC108350703uncharacterized LOC10835070347719590077341432Rat
11380450Trnac-gca39transfer RNA cysteine (anticodon GCA) 3947720206277202133Rat
11365902Trnac-gca14transfer RNA cysteine (anticodon GCA) 1447720364177203712Rat
11442637Trnac-gca15transfer RNA cysteine (anticodon GCA) 1547720984077209911Rat
11515107Trnac-gca16transfer RNA cysteine (anticodon GCA) 1647723254277232613Rat
11368396Trnac-gca17transfer RNA cysteine (anticodon GCA) 1747723542477235495Rat
11517337Trnac-gca18transfer RNA cysteine (anticodon GCA) 1847723641577236486Rat
1583518Mrpl17-ps2mitochondrial ribosomal protein L17, pseudogene 247725297477253783Rat
11448279Trnac-gca19transfer RNA cysteine (anticodon GCA) 1947726528277265353Rat
11497862Trnac-gca20transfer RNA cysteine (anticodon GCA) 2047726629777266368Rat
11415393Trnac-gca21transfer RNA cysteine (anticodon GCA) 2147727232077272391Rat
11400791Trnac-gca22transfer RNA cysteine (anticodon GCA) 2247727333277273403Rat
11453373Trnac-gca23transfer RNA cysteine (anticodon GCA) 2347727609477276165Rat
1564070Fgfr1-ps1fibroblast growth factor receptor 1, pseudogene 147727960477282022Rat
11397796Trnac-gca24transfer RNA cysteine (anticodon GCA) 2447728288577282956Rat
11420199Trnac-gca25transfer RNA cysteine (anticodon GCA) 2547728386677283937Rat
11386332Trnac-gca26transfer RNA cysteine (anticodon GCA) 2647729489477294965Rat
11390635Trnac-gca27transfer RNA cysteine (anticodon GCA) 2747729587377295944Rat
11467847Trnac-gca28transfer RNA cysteine (anticodon GCA) 2847730766177307732Rat
1306967Krba1KRAB-A domain containing 147734165477363075Rat
1561603Zfp467zinc finger protein 46747738575277394709Rat
1549716SspoSCO-spondin47739491577450526Rat
41321371LOC120102263uncharacterized LOC12010226347744562977451151Rat
1598054Zfp862zinc finger protein 86247745293077481981Rat
1303238Atp6v0e2ATPase, H+ transporting V0 subunit e247748486877488016Rat
1561800Lrrc61leucine rich repeat containing 6147750388277523909Rat
1309874Rarres2retinoic acid receptor responder 247752254977525733Rat
2323359LOC100363281hypothetical LOC10036328147753819177545808Rat
1549707Repin1replication initiator 147754872477554242Rat
1304910Zfp775zinc finger protein 77547755703777575296Rat
1559747RGD1559747similar to Zinc finger and SCAN domain containing protein 2 (Zinc finger protein 29)47757987777585816Rat
1564570Gimap8GTPase, IMAP family member 847760010477611593Rat
1549762Gimap9GTPase, IMAP family member 947762655377629386Rat
628765Gimap4GTPase, IMAP family member 447763640177643315Rat
1305041Gimap6GTPase, IMAP family member 647765370377659112Rat
1565750Gimap7GTPase, IMAP family member 747767052277674692Rat
1306777Gimap1GTPase, IMAP family member 147768758177691468Rat
628871Gimap5GTPase, IMAP family member 547769341777701025Rat
708403Tmem176btransmembrane protein 176B47776692877774740Rat
1310725Tmem176atransmembrane protein 176A47777494077778620Rat
61296Aoc1amine oxidase, copper containing 147781226077831846Rat
1587193Dab2ip-ps1DAB2 interacting protein, pseudogene 147784161377844707Rat
11436055LOC108350705amiloride-sensitive amine oxidase [copper-containing]-like47787153177873395Rat
735023Doxl1diamine oxidase-like protein 147787942877883044Rat
40942986LOC120102699small nucleolar RNA SNORA1747788726377887385Rat
735130Doxl2diamine oxidase-like protein 247793455177938333Rat
2323010Aoc1-ps1amine oxidase, copper containing 147794799777948862Rat
708424Svs1seminal vesicle secretory protein 147795547877960376Rat
7661434LOC102546557uncharacterized LOC10254655747799003977994867Rat
71008Gpnmbglycoprotein nmb47801024778031491Rat
1306936Malsu1mitochondrial assembly of ribosomal large subunit 147805109078059913Rat
1306512Igf2bp3insulin-like growth factor 2 mRNA binding protein 347806049478195007Rat
1562563Tra2atransformer 2 alpha47822083878239737Rat
1583234Gemin7l1gem (nuclear organelle) associated protein 7-like 147826991078270681Rat
41214177Ptma-ps6prothymosin alpha, pseudogene 647829254878293734Rat
1561171Ccdc126coiled-coil domain containing 12647829762578318655Rat
6497475Tma7btranslation machinery associated 7B47833066378331163Rat
11412043LOC10835085860S ribosomal protein L17 pseudogene47833370478336111Rat
1563175Fam221afamily with sequence similarity 221, member A47833729678358918Rat
1563352Rps11l1ribosomal protein S11 like 147836759778368077Rat
1564384Stk31serine threonine kinase 3147837069178467599Rat
41158599LOC120102266uncharacterized LOC12010226647850726778513680Rat
41201656LOC120102267uncharacterized LOC12010226747851382078519021Rat
6485532Ywhaq-ps1tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta, pseudogene 147855544378556936Rat
1564712RGD1564712RGD156471247865228978679549Rat
3197Npyneuropeptide Y47888129478888495Rat

Markers in Region
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolExpected SizeChrStartStopSpeciesMatch
10144D4Mgh1623946293326962933508Ratregion
10145D4Arb1039446293321762933611Ratregion
11009D4Wox2113547888281778882954Ratregion
11010D4Hri112647888281778882945Ratregion
11011D4Mgh420747887850478878711Ratregion
11015D4Mit2412847888281578882945Ratregion
11171D4Hri215547036205170362206Ratregion
11172D4Wox2418547036204170362226Ratregion
11173D4Arb829647036201370362309Ratregion
11174D4Mgh3240447027879370279197Ratregion
11176D4Wox2316947028245670282627Ratregion
11177D4Arb937047027962870279998Ratregion
34230D4Mgh2413047472618274726312Ratregion
34282D4Mgh1513745669879056698927Ratregion
34379D4Mgh39845824513158245229Ratregion
11342D4Got4318446927604269276226Ratregion
11401D4Arb1218447041122270411406Ratregion
33656D4Mit99745664777656647873Ratregion
33682D7Mit1820046792233367922521Ratregion
33711D4Mit512147316984673169967Ratregion
33757D4Mit227145711443257114705Ratregion
36181D4Rat2616047036201770362197Ratregion
35260D4Rat2216546227785562278020Ratregion
36852D4Rat1816146622973366229894Ratregion
36938D4Rat2915647601353076013686Ratregion
37012D4Rat2511746699318566993302Ratregion
37026D4Rat2711747250051072500627Ratregion
36540D4Rat2421245994893559949149Ratregion
36741D4Rat3117247541108475411258Ratregion
36753D4Rat2014046105775661057896Ratregion
34791D4Rat7515447709136077091514Ratregion
34845D4Rat1913147171132571711456Ratregion
34943D4Rat3012447558500475585128Ratregion
35082D4Rat7312345866129958661423Ratregion
35124D4Rat3214047622136476221504Ratregion
39790D4Rat21316747482575074825917Ratregion
38104D4Rat11824846571731765717565Ratregion
38116D4Rat13212046015269560152815Ratregion
38310D4Rat13516246572068165720843Ratregion
40620D4Rat22615546283772562837880Ratregion
40698D4Rat16324747370376673704013Ratregion
38728D4Rat12225346595785065958103Ratregion
40006D4Rat21417047758020677580376Ratregion
38966D4Rat9320046865345668653663Ratregion
39104D4Rat969846660935866609456Ratregion
39266D4Rat10225646738666967386927Ratregion
42142D4Arb1123446067096960671203Ratregion
42164D4Arb2925346452873964528994Ratregion
42170D4Arb3417446926030869260484Ratregion
42172D4Arb3514747888281578882964Ratregion
42174D4Arb3617047028245570282627Ratregion
42176D4Arb3710346294650162946604Ratregion
42178D4Arb3817847036204870362226Ratregion
41182D4Rat16813847800453478004670Ratregion
41336D4Rat16417947399816673998347Ratregion
42694D4Rat22520045978029159780469Ratregion
42695D4Rat29119146064368360643874Ratregion
42696D4Rat25722546286893062869155Ratregion
42697D4Rat25621846343526263435482Ratregion
42700D4Rat22924047709815277098394Ratregion
42703D4Rat26319847604761076047808Ratregion
42704D4Rat26420047799153277991729Ratregion
40910D4Rat15823545784751957847754Ratregion
41124D4Rat16221346969588469696096Ratregion
43795D4Wox1010745863587758635984Ratregion
43796D4Got4218045998245059982630Ratregion
43797D4Got3519845848983358490031Ratregion
43798D4Got4017946096550960965688Ratregion
43800D4Got3716246046211060462272Ratregion
43801D4Got3820846038142060381628Ratregion
43802D4Got4116246169765861697820Ratregion
43803D4Got399945843213358432232Ratregion
43805D4Got4418046511727765117457Ratregion
43806D4Got4714846865726268657410Ratregion
43807D4Got4822646680027066800498Ratregion
43808D4Got4925046767659267676842Ratregion
43809D4Got5212047160242071602540Ratregion
43810D4Got5120647124172471241930Ratregion
43811D4Got5419147576396175764152Ratregion
43812D4Got5713647532473375324869Ratregion
43813D4Got5616947450666574506834Ratregion
43814D4Got5916147735672177356882Ratregion
60805D4Wox615047331865573318803Ratregion
60806D4Wox713147275270372752834Ratregion
60732D4Mit618447664738476647568Ratregion
60440D4Got4517246774119167741363Ratregion
60443D4Got5021246555470665554918Ratregion
60444D4Got5319147611251576112706Ratregion
60445D4Got5524947559126175591515Ratregion
60446D4Got5824647139971471399958Ratregion
62480D4Uia218246936437569364557Ratregion
738056D4Rhw218247762872277628904Ratregion
738063D4Rhw816747770172077701887Ratregion
738065D4Rhw621647768715077687411Ratregion
738067D4Rhw412047774472177744841Ratregion
1576373D4Rhw1525047812229178122541Ratregion
1576376D4Rhw1624847802931978029567Ratregion
1576381D4Rhw923047876060778760837Ratregion
1576382D4Rhw1027147865452778654798Ratregion
1576385D4Rhw1421747817985878180075Ratregion
1576387D4Rhw1222947694284076943069Ratregion
1576388D4Rhw1120947672131276721521Ratregion
1627601D4Got20820646821391568214121Ratregion
1628130D4Got27913547442962974429764Ratregion
1628207D4Got21029647668041676680712Ratregion
1629744D4Wox4113145917017659170307Ratregion
1639418D4Got3616445700072657000890Ratregion
1633620D4Got20626945988457259884841Ratregion
1640364D5Got30511647447123974471355Ratregion
1635755D4Wox3710645839515158395257Ratregion
1635866D4Got20718647206521772065403Ratregion
1637871D4Wox4230546294791362948220Ratregion
1638392D4Got30110046468704964687149Ratregion
1633811D4Got24622046851801768518239Ratregion
1634181D4Got28818946513055365130742Ratregion
2290565D4Rhw1720846305580163056009Ratregion
7206028Olfr44952447180016271800686Ratregion
7193096AI76384112446341351963413643Ratregion
7206272Opn1sw51045797980357980313Ratregion
7206464Smo94145837247558373416Ratregion
5038644BB2834669946903533269035431Ratregion
5038646RH12707720447691003876910242Ratregion
5036029PMC97559P111945873824758738366Ratregion
5038776RH12732618446814184168142025Ratregion
5036292Ezh212747662461376624740Ratregion
5039174RH12755418347752192377522106Ratregion
5039212RH12757619045936560559365795Ratregion
5036396PMC21729P119145767222857672419Ratregion
5039036RH12747618247116719371167375Ratregion
5036741AU04905614745846563458465781Ratregion
5036749AU04908118546755668767556872Ratregion
5037159IB80918245853065458530836Ratregion
5035591WI-2117024646415692264157168Ratregion
5035637D7S29649445852786858527962Ratregion
5033909RH14057718546749730167497486Ratregion
7206214Insig118646733053167330696Ratregion
7206234Sspo140747742181677423223Ratregion
5034037RH14111919147124609171246282Ratregion
5028843RH14254110946416610464166213Ratregion
5034271RH14200818247120106771201249Ratregion
5034293RH14209621346722961067229823Ratregion
5026300RH13168420046590784865908048Ratregion
5026388RH13201420547769137577691580Ratregion
5029027RH14323921546335755663357771Ratregion
5026530RH13256521047755398177554191Ratregion
5026670RH13309018946393923663939425Ratregion
5026698RH13319319945787488457875083Ratregion
5026758RH13341918246072035060720532Ratregion
5026830RH13369521146701225167012462Ratregion
5029563BE09550915346730183067301983Ratregion
5032273AW0498459945939876059398859Ratregion
5032329Copg2as142945936597159366400Ratregion
5027010RH13438619746415951764159714Ratregion
5027048RH13453319147748852277488713Ratregion
5027083STS-H2311716045743507257435232Ratregion
5029711AW52377116247415950774159669Ratregion
5029733BF3934099746316218463162281Ratregion
5035350BQ20563415046702926067029410Ratregion
5035450BE10698116347687527476875437Ratregion
5035475AI40660816045877212458772284Ratregion
5027175GDB:45853636446293893862939002Ratregion
5029735BE10221520845902419459024402Ratregion
5029753BF38701815247850852378508715Ratregion
5029843BG37711616246676039866760560Ratregion
5032661RH13482920946028356560283774Ratregion
5034888AI41107313445787354557873679Ratregion
5034896AI17837535447693554076935894Ratregion
5030031BI27997317847796006677960244Ratregion
5030035AI7135029547822095278221047Ratregion
5032759RH13519421047696690076967110Ratregion
5035288AA85925618147704301377043194Ratregion
5030081BE11006315245936519059365342Ratregion
5033007RH13726018246837884068379022Ratregion
5025014AU02331911146926168769261798Ratregion
5027697WI-1479515046204024562040395Ratregion
5033025RH13731619846013535160135550Ratregion
5030429BF39757421346734479267345005Ratregion
5033231RH13806719646919721469197410Ratregion
5033313RH13837712046316777563167895Ratregion
5025400RH12816818647736277777362963Ratregion
5025404RH12818421046393692463937134Ratregion
5025426RH12827020546293221962932424Ratregion
5030561BI29528519947805992778060126Ratregion
5030711BF39891219446684478166844975Ratregion
5033355RH13852614746593268265932829Ratregion
5030877BF39909215747823882378238980Ratregion
5033537RH13919212447676833176768455Ratregion
5033537RH13919212447677373076773854Ratregion
5033537RH13919212447677914176779265Ratregion
5025650RH12913018246345837663458558Ratregion
5030911BF39930419547636364976363844Ratregion
5030927BF39945715945801443358014592Ratregion
5025934RH13025621446013207260132286Ratregion
5028454AI4474699946837913168379230Ratregion
5052045RH948089945767255957672658Ratregion
5054895RH14348629946701328467013583Ratregion
5051214RH13450518546354756063547745Ratregion
5053513RH14269225047508669075086940Ratregion
5053653RH14277327045967530159675571Ratregion
5056219RH14425218146016245460162635Ratregion
5051763RH9464410947119985571199964Ratregion
5053793RH14285413346837617868376311Ratregion
5056645RH14449818446542025165420435Ratregion
5051817RH9467518046294666362946843Ratregion
5057542BE09551119147417392074174111Ratregion
5054635RH14333719346013072260130915Ratregion
5055085RH14359716146345404563454206Ratregion
5058018BF38647515045997741759977567Ratregion
5056313RH14430610045741846857418568Ratregion
5058728BI28451563547795970077960335Ratregion
5058840BF38714218346903366369033846Ratregion
5058084AI07045121045685115456851364Ratregion
5052739RH14224417646415697664157152Ratregion
5058968BE10264019746564924665649443Ratregion
5059746BE09779019945938911959389318Ratregion
5059746BE09779019945939458159394780Ratregion
5052985RH14238818946072050760720696Ratregion
5053005RH14239915045853060158530751Ratregion
5059890AI07201628947752261377522902Ratregion
5058322BG37628813846317345663173594Ratregion
5058354BF41963419346052302160523214Ratregion
5058356AI13694218846817893668179124Ratregion
5052341U5295115347662459076624743Ratregion
5059204BF38764017045869303258693202Ratregion
5059250BF38788015845899725058997408Ratregion
5059318BG37729512945857802058578149Ratregion
5057834BF38624017346743648667436659Ratregion
5050490RH13408621846393245363932671Ratregion
5053629RH14275926146373478763735048Ratregion
5052452AI44943227847690991976910197Ratregion
5052454AI44878014147736287077363011Ratregion
5051124RH13445321247705525177055463Ratregion
5054073RH14301510846182074061820848Ratregion
5053101RH14245410245818678058186882Ratregion
5051707RH9461116946344499863445167Ratregion
5051112RH13444622047691138376911603Ratregion
5041882RH12911318145926329059263471Ratregion
5040724RH12844720945814312758143336Ratregion
5040756RH12846520847056830270568510Ratregion
5041092RH12865818947764534977645537Ratregion
5043780RH13022321546701224967012464Ratregion
5045346RH13112567447768762077688294Ratregion
5045516RH13122218046919367369193853Ratregion
5041352RH12880816246725137367251535Ratregion
5041506RH12889621246734731667347528Ratregion
5041530RH12891015746012843660128593Ratregion
5043924RH13030820247827003478270236Ratregion
5043952RH13032519846618715766187355Ratregion
5046150RH13158715346529381065293963Ratregion
5044750RH13078220745899006558990272Ratregion
5044834RH13083020345877040658770609Ratregion
5044348RH13055119045941214359412333Ratregion
5045376RH13114219445787378357873977Ratregion
5045160RH13101860446783643967837043Ratregion
5047662RH13245620346706264167062844Ratregion
5048894RH13316720147776700277767203Ratregion
5045640RH13129418246183072961830911Ratregion
5049276RH13338721146684089366841104Ratregion
5046656RH13187918146836252168362702Ratregion
5045920RH13145519646217805162178247Ratregion
5049004RH13323119745905660159056798Ratregion
5046896RH13201719046300985763010047Ratregion
5048120RH13272019446735207267352266Ratregion
5046936RH13204019846316830163168499Ratregion
5047002RH13207818047738580477385984Ratregion
5049772RH13367349247079130970791801Ratregion
5047294RH13224518046922959569229775Ratregion
5047312RH13225519447785923877859432Ratregion
5042594RH12952919746814247968142676Ratregion
5042618RH12954320146359521663595417Ratregion
5042666RH12957219947765265977652858Ratregion
5042914RH12971918646394347763943663Ratregion
5039390RH12767821145797623157976442Ratregion
5042172RH12928118347782478377824966Ratregion
5039804RH12791619347092705070927243Ratregion
5040044RH12805719646732899167329187Ratregion
5040044RH12805719646732899167329187Ratregion
5040280RH12819318047783149277831672Ratregion
5042746RH12962120247050701770507219Ratregion
5042828RH12966915745704128957041446Ratregion
5041024RH12861921946012370760123926Ratregion
5040318RH12821418946415697264157161Ratregion
5041582RH12894015847112312871123286Ratregion
5075140RH13842123846669494066695178Ratregion
5075246RH13848313746305480763054944Ratregion
5076450RH13918222346741431367414536Ratregion
5074594RH13810618347508653775086720Ratregion
5074906RH13828718246693938466939566Ratregion
5074972RH13832518546339111763391302Ratregion
5080564RH14165318145939869659398877Ratregion
5080626RH14168821646706707267067288Ratregion
5080628RH14168921247770069077700902Ratregion
5077310RH13968320545936634459366549Ratregion
5076108RH13898414846817640668176554Ratregion
5076184RH13902822645939660059396826Ratregion
5079366RH14095555945704972457050283Ratregion
5079368RH14095618046353167263531852Ratregion
5079392RH14096920447114872871148932Ratregion
5077810RH13997220345832976958329972Ratregion
5077854RH13999819147822980178229992Ratregion
5078958RH14065019147160017271600363Ratregion
5078962RH14065321947057717770577396Ratregion
5078320RH14027260747799036777990974Ratregion
5079284RH14089218146277795862778139Ratregion
5079288RH14089418046308919663089376Ratregion
5079344RH14093775945837286158373620Ratregion
5080352RH14153021445939660059396814Ratregion
5073318RH13736718847806229778062485Ratregion
5078762RH14053724745679898756799234Ratregion
5073574RH13751521147636107176361282Ratregion
5071658RH13521021347676858476768797Ratregion
5071658RH13521021347677398376774196Ratregion
5071658RH13521021347677939476779607Ratregion
5074020RH13777313046833046768330597Ratregion
5070888RH13476421245776611257766324Ratregion
5071230RH13496320046987183269872032Ratregion
5073290RH13735119046723624467236434Ratregion
5073450RH13744318046072210960722289Ratregion
5072100RH13665119445868775258687946Ratregion
5074506RH13805615645692463756924731Ratregion
5073638RH13755222247158983271590054Ratregion
5072316RH13677812146258547762585598Ratregion
5072372RH13681112746823324768233374Ratregion
5074656RH13814218946376416063764349Ratregion
5071714RH13524220846415778164157989Ratregion
5071776RH13527815947680901176809170Ratregion
5061710BF40251712945938372559383855Ratregion
5067318AU04782823246684544766845679Ratregion
5067370AU04779511946116106661161185Ratregion
5067684AU04759717346215821062158383Ratregion
5068338AU04720616146001735460017509Ratregion
5068418AU04715714346071161160711754Ratregion
5068494AU04711217945694585856946037Ratregion
5068676AU04700114247217539372175535Ratregion
5070358AI8417968446919732469197408Ratregion
5070360AV27746613547120131671201452Ratregion
5069084AU04673520245700068757000890Ratregion
5070526RH12721023845874793058748168Ratregion
5060276AW53106615445880835458808508Ratregion
5060404BI29217515046971704669717196Ratregion
5060486BE11020717445936382659364000Ratregion
5060564BE09842616346013401260134176Ratregion
5060574BE11042018945837471558374904Ratregion
5062492BE10674117346352013463520307Ratregion
5065802BF40648111345934871059348823Ratregion
5065872AA96407821145704121057041421Ratregion
5060120BF38851417547759477677594951Ratregion
5060250BI27998369947795963677960335Ratregion
5063640BE10788919445807316758073361Ratregion
5065408AA95759320845760581157606019Ratregion
5060498BE11023016446190469261904856Ratregion
5062254BF39763713945910310259103241Ratregion
5062484BF39797912046867061068670730Ratregion
5060940BF40144924646113392261134168Ratregion
5065930BE11618416746529394765294114Ratregion
5061072AW53208616447655146876551632Ratregion
5061182BE11116478645927356559274351Ratregion
5062956BI29569015046394416963944319Ratregion
5061340BF39625414145911480759114948Ratregion
5064644AI76384112946341362163413750Ratregion
5066332PMC152658P441147833058778330999Ratregion
5066332PMC152658P441147833058778331102Ratregion
5066392AU04838427846553837665538654Ratregion
5061390BF39631322045936258759362807Ratregion
5066566AU04828111646598301665983132Ratregion
5061518BE11194415045938763759387787Ratregion
5061576BF39672414346227515062275293Ratregion
5086957BM38904721845906100759061225Ratregion
5082145BF40999613046600577866005908Ratregion
5082187BI28045063147795970477960335Ratregion
5087344AI55522312345788618957886518Ratregion
5087456PMC186618P150047769988777700387Ratregion
5087458PMC186618P233947770004877700387Ratregion
5082471BF41606225846796623967966497Ratregion
5086475BE10708016046928096969281129Ratregion
5082915BF39040415046308259463082744Ratregion
5087460PMC186618P338547770004877700433Ratregion
5087860UniSTS:14305421447663691476637128Ratregion
5083017BF39066420146747884567479046Ratregion
5083023BF39068715145965966759659818Ratregion
5088205AU04843010947574199175742100Ratregion
5089367AU04911421847742060377420821Ratregion
5088483AU04859618145987684059877021Ratregion
5088559AU04864220945943679359437002Ratregion
5089449AU04916225645814999458150250Ratregion
5089621AU04926426247740270777402971Ratregion
5084056AI17605314045709649357096633Ratregion
5084160AI23401915446355305563553209Ratregion
5084168AI40852836247753747277537834Ratregion
5084236AI23292019145680453856804729Ratregion
5081801AI06001210945934905859349167Ratregion
5084516AA94624322546514887365149098Ratregion
5084730AI17794412146979702169797142Ratregion
5090043AU04951619546675540866755603Ratregion
5090069AU04953127247351343173513703Ratregion
5084344AI23371918446960171069601894Ratregion
5087610PMC55360P237346294003162940404Ratregion
5081917BE11874516646306275263062918Ratregion
5087745Cpa26745925887859259145Ratregion
5082185BI28043116247796017377960335Ratregion
5085312BQ20052616045910542759105587Ratregion
5080730RH14174818046343760363437783Ratregion
5085331BE09665419945875830958758508Ratregion
5085343BE10205216146919966969199830Ratregion
5081164RH14200118846076588560766073Ratregion
5085533BQ20166220147806690478067105Ratregion
5090133AU04956916045727000357270163Ratregion
5089003AU04889715946310962463109783Ratregion
5082605BF41640920946397392263974131Ratregion
5082665BE11996116047748174277481902Ratregion
5085838BF38818120746160624661606453Ratregion
5082777BF39008020146065211260652313Ratregion
5086419AI41235716447050927770509441Ratregion
5086492BQ20704616446372968163729845Ratregion
5081535BE11723217246666433666664508Ratregion
5085586AW52812123345741881657419049Ratregion
5085641BE10180916145758729457587455Ratregion
5086735AA81915414946529408465294233Ratregion
5085888AW52926320346849411168494314Ratregion
5085988AW53595220046816967568169875Ratregion
5503088Zyx7547123904071239115Ratregion
5503690TSGA14__514870645927119559271901Ratregion
5507525REN11424324445673122156731465Ratregion
5507527REN11424024645673067156730917Ratregion
5507529REN11477525245682902256829274Ratregion
5507531REN11485919745684917056849367Ratregion
5507533REN11485826645684892256849187Ratregion
5507535REN11543925645701091357011169Ratregion
5507597Opn1sw88545797791457978799Ratregion
5503212ha2063161945686498456866603Ratregion
5503869LEP-38345767056957672217Ratregion
5504078px-71c1025347079791070798163Ratregion
5504056px-50f1017747536605075366227Ratregion
5504296D7S2119E10646903540369035508Ratregion
5504756PMC87093P140447664548576645889Ratregion
5505163Lrrc494845743585557436803Ratregion
5505247Olfr455-ps140347145073071451133Ratregion
5505216Agbl344146347178863472229Ratregion
5505316Ywhaq60947855625078556859Ratregion
5505588UniSTS:48508494146936072269361663Ratregion
5505640UniSTS:48784996647129291171293877Ratregion
5505560GDB:45854138046748371567483795Ratregion
5505666UniSTS:48866996647129291171293877Ratregion
5505837UniSTS:49587962747125163171252258Ratregion
5505584UniSTS:48506293347185608371857016Ratregion
5505722UniSTS:49063588547128785671288741Ratregion
5506799G4570922547767649077676717Ratregion
5506865G4675326447412297874123242Ratregion
5507321G4810811846634868766348805Ratregion
5499781UniSTS:23464620847788280577883013Ratregion
5502421RH12478510245936588759365989Ratregion
5503097ARF561745703864657039263Ratregion
5503192ksks43026946371378163714050Ratregion
5500511RH12701821745814375058143967Ratregion
5500721RH286867447707364977073723Ratregion
5500773stSG61372671745704143457042151Ratregion
5500851GDB:45851419645743510357435199Ratregion
5501325ECD1705139445684944256849836Ratregion
5501514GDB:131842218847603604676036234Ratregion
5501449Tcrb-C12547041796070418727Ratregion
5501691CHRM259446514402965144624Ratregion
5501754MARC_11525-11526:1001518036:177645796634257967118Ratregion
5501874MARC_16655-16656:1017778016:121547115216871152636Ratregion
5505518UniSTS:1040810546072029760720402Ratregion
5505770UniSTS:492976147046514367165145141Ratregion
5505841UniSTS:49589182447050013470500958Ratregion
5502381RH12466932546836137668361701Ratregion
5502519RH12517711647123808971238205Ratregion
5506827G4626430246877419268774494Ratregion
5502635RH12597219547667869576678890Ratregion
5502251AU04127717545837354958373724Ratregion
Position Markers

Flank 1: (D4Mit9)
Rat AssemblyChrPosition (strand)Source
GRCr8457,613,242 - 57,613,339 (+)Marker Load Pipeline
mRatBN7.2456,647,776 - 56,647,873 (+)MAPPER
Rnor_6.0455,324,857 - 55,324,953NCBI
Rnor_5.0455,067,578 - 55,067,674UniSTS
RGSC_v3.4454,828,069 - 54,828,166RGD
RGSC_v3.4454,828,070 - 54,828,166UniSTS
Celera451,764,933 - 51,765,029UniSTS
RH 3.4 Map4295.8RGD
RH 3.4 Map4295.8UniSTS
Cytogenetic Map4q22UniSTS
Peak: (D4Mit9)
Rat AssemblyChrPosition (strand)Source
GRCr8457,613,242 - 57,613,339 (+)Marker Load Pipeline
mRatBN7.2456,647,776 - 56,647,873 (+)MAPPER
Rnor_6.0455,324,857 - 55,324,953NCBI
Rnor_5.0455,067,578 - 55,067,674UniSTS
RGSC_v3.4454,828,069 - 54,828,166RGD
RGSC_v3.4454,828,070 - 54,828,166UniSTS
Celera451,764,933 - 51,765,029UniSTS
RH 3.4 Map4295.8RGD
RH 3.4 Map4295.8UniSTS
Cytogenetic Map4q22UniSTS
Flank 2: (D4Mit24)
Rat AssemblyChrPosition (strand)Source
mRatBN7.2478,882,815 - 78,882,945 (+)MAPPER
Rnor_6.0479,575,532 - 79,575,658NCBI
Rnor_6.0479,559,378 - 79,559,505NCBI
Rnor_5.04144,235,275 - 144,235,402UniSTS
Rnor_5.04144,249,324 - 144,249,450UniSTS
RGSC_v3.4478,039,507 - 78,039,637RGD
RGSC_v3.4478,039,508 - 78,039,637UniSTS
Celera473,796,670 - 73,796,807UniSTS
RGSC_v3.1478,315,637 - 78,315,767RGD
RH 3.4 Map4500.0RGD
RH 3.4 Map4500.0UniSTS
RH 2.0 Map4554.5RGD
Cytogenetic Map4q24UniSTS


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2302371Stl22Serum triglyceride level QTL 225.15blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)4521829457114705Rat
1358352Srcrt3Stress Responsive Cort QTL 32.29blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)438465774146803430Rat
1549843Bw53Body weight QTL 530.0001body mass (VT:0001259)body weight gain (CMO:0000420)461697658103194791Rat
61445Strs3Sensitivity to stroke QTL 33cerebrum integrity trait (VT:0010549)post-insult time to onset of cerebrovascular lesion (CMO:0002343)44043338885433388Rat
6893678Bw108Body weight QTL 1082.60.006body mass (VT:0001259)body weight (CMO:0000012)44345797688457976Rat
10755501Bp390Blood pressure QTL 3902.5arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)426775591168368347Rat
1357342Bw40Body weight QTL 400.001body mass (VT:0001259)body weight (CMO:0000012)476647384117676292Rat
631556Bp135Blood pressure QTL 1350.017arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)478881294117676292Rat
1358363Sradr3Stress Responsive Adrenal Weight QTL 36.19adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)457486946102486946Rat
61330Eau1Experimental allergic uveoretinitis QTL 10.0003uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)470362013132642728Rat
70167Bw22Body weight QTL 223.1body mass (VT:0001259)body weight (CMO:0000012)476647384117676292Rat
10450825Scl78Serum cholesterol level QTL 783.70.01blood VLDL cholesterol amount (VT:0005144)blood low density lipoprotein cholesterol level (CMO:0000053)44917811657114705Rat
1549839Bw52Body weight QTL 520.0001body mass (VT:0001259)body weight gain (CMO:0000420)461697658115089733Rat
61336Bp21Blood pressure QTL 214.6arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)45711470578881294Rat
2313401Anxrr27Anxiety related response QTL 27aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)41793350862933508Rat
10450821Scl77Serum cholesterol level QTL 774.10.01blood VLDL cholesterol amount (VT:0005144)blood high density lipoprotein cholesterol level (CMO:0000052)44917811657114705Rat
10450818Scl76Serum cholesterol level QTL 763.60.01blood VLDL cholesterol amount (VT:0005144)blood high density lipoprotein cholesterol level (CMO:0000052)44917811657114705Rat
724522Bp146Blood pressure QTL 1462.20.0021arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)473630210118630210Rat
6909128Pancm4Pancreatic morphology QTL 411.35pancreas mass (VT:0010144)pancreas wet weight (CMO:0000626)42690728575585128Rat
61475Aia2Adjuvant induced arthritis QTL 25.8joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)43950527573892441Rat
8694439Bw168Body weight QTL 1689.570.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)44043341485433414Rat
8655906Rf60Renal function QTL 603.8blood creatinine amount (VT:0005328)creatinine clearance (CMO:0000765)42949419581006281Rat
2317577Eae24Experimental allergic encephalomyelitis QTL 24nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis severity score (CMO:0001419)46699318572752834Rat
7387227Uae40Urinary albumin excretion QTL 402.90.0052urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)41794699962946999Rat
6909122Insul22Insulin level QTL 224.63blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)42690728575585128Rat
2300179Bmd50Bone mineral density QTL 505.90.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)460928534105928534Rat
1354660Salc1Saline consumption QTL 111.26drinking behavior trait (VT:0001422)saline drink intake rate (CMO:0001627)444463908148090542Rat
70192BpQTLcluster5Blood pressure QTL cluster 54.183arterial blood pressure trait (VT:2000000)absolute change in mean arterial blood pressure (CMO:0000533)462933508114921294Rat
1298082Stresp4Stress response QTL 4blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)450119848146803430Rat
2317586Eae25Experimental allergic encephalomyelitis QTL 259.300000190734863nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis duration (CMO:0001424)47888281783007655Rat
1300139Hrtrt6Heart rate QTL 62.85heart pumping trait (VT:2000009)heart rate (CMO:0000002)439524264116179656Rat
70200Alc18Alcohol consumption QTL 189.2drinking behavior trait (VT:0001422)ethanol intake volume to total fluid intake volume ratio (CMO:0001591)456647873149491524Rat
1578657Bss12Bone structure and strength QTL 128.9femur morphology trait (VT:0000559)femoral neck cross-sectional area (CMO:0001697)460220938105220938Rat
1578658Bss13Bone structure and strength QTL 138femur strength trait (VT:0010010)femoral neck polar moment of inertia (CMO:0001670)460220938105220938Rat
4889969Bss96Bone structure and strength QTL 964.9tibia size trait (VT:0100001)tibia cortical bone volume (CMO:0001725)45664777678882945Rat
2316958Gluco58Glucose level QTL 5810blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)411320076180699135Rat
4889972Bss97Bone structure and strength QTL 975.6tibia size trait (VT:0100001)tibia total bone volume (CMO:0001724)45664777678882945Rat
6478684Anxrr30Anxiety related response QTL 300.00087defecation behavior trait (VT:0010462)defecation rate (CMO:0000998)462753847107753847Rat
2302051Pia28Pristane induced arthritis QTL 285.30.001blood autoantibody amount (VT:0003725)serum immunoglobulin G-type rheumatoid factor level relative to an arbitrary reference serum (CMO:0002112)473630210118630210Rat
2303585Bw86Body weight QTL 864body mass (VT:0001259)body weight (CMO:0000012)41467806559678065Rat
5685012Bmd87Bone mineral density QTL 875.1tibia mineral mass (VT:1000283)bone mineral content (CMO:0001554)45664777678882945Rat
5685009Bmd86Bone mineral density QTL 863.7tibia mineral mass (VT:1000283)bone mineral density (CMO:0001226)45664777678882945Rat
1331807Rf31Renal function QTL 312.988urine potassium amount (VT:0010539)urine potassium level (CMO:0000128)43952426474726312Rat
8552782Vie1Viral induced encephalitis QTL 126.4brain integrity trait (VT:0010579)encephalitis incidence/prevalence measurement (CMO:0002361)43443048482490359Rat
634311Sach7Saccharin preference QTL 7taste sensitivity trait (VT:0001986)saccharin intake volume to total fluid intake volume ratio (CMO:0001601)45711443281266970Rat
2306547Iddm38Insulin dependent diabetes mellitus QTL 38blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)46738666970362197Rat
738009Sach4Saccharine consumption QTL 44.90.000016consumption behavior trait (VT:0002069)saccharin intake volume to total fluid intake volume ratio (CMO:0001601)459948935154902892Rat
2306545Iddm39Insulin dependent diabetes mellitus QTL 39blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)47735672177687411Rat
631642Stl2Serum triglyceride level QTL 23.3blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)4521917856647776Rat
631261Tcas3Tongue tumor susceptibility QTL 36.88tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)41081417091360527Rat
2312567Glom19Glomerulus QTL 191.90.006kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)445456990146803430Rat
6478772Anxrr49Anxiety related response QTL 490.15488defecation behavior trait (VT:0010462)defecation rate (CMO:0000998)462753847107753847Rat
631646Stl4Serum triglyceride level QTL 46.50.0001blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)473169846132642728Rat
2312569Pur19Proteinuria QTL 193.40.001urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)46588210796130297Rat
8655961Kidm43Kidney mass QTL 4318kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)436303261103194984Rat
1354612Foco1Food consumption QTL 18.87eating behavior trait (VT:0001431)food intake rate (CMO:0000427)444463908148090542Rat
634344Hcar7Hepatocarcinoma resistance QTL 77.8liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)470808386115808386Rat
2303168Bp330Blood pressure QTL 3304.250.017arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)45214602146446691Rat
8552801Bw143Body weight QTL 1437.3body mass (VT:0001259)change in body weight to body weight ratio (CMO:0002216)43443048482490359Rat
738031Alc14Alcohol consumption QTL 147.60.00003consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)459948935154902892Rat
61412Pia2Pristane induced arthritis QTL 23.9joint integrity trait (VT:0010548)post-insult time to onset of experimental arthritis (CMO:0001450)42133334362278020Rat
8552807Vie4Viral induced encephalitis QTL 47.3brain integrity trait (VT:0010579)encephalitis incidence/prevalence measurement (CMO:0002361)46293350882490359Rat
631662Hcar2Hepatocarcinoma resistance QTL 23.10.0003liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)478878504123878504Rat
619616Bp79Blood pressure QTL 790.0292arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)4521460278882945Rat
1576305Emca6Estrogen-induced mammary cancer QTL 65.8mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)444463720155883716Rat
631651Bp124Blood pressure QTL 1243arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)462879517107879517Rat
61418Pia5Pristane induced arthritis QTL 54.5joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)462277855128289560Rat
738016Alc16Alcohol consumption QTL 163.60.00015consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)459948935154902892Rat
8552809Vie5Viral induced encephalitis QTL 525.3brain integrity trait (VT:0010579)encephalitis incidence/prevalence measurement (CMO:0002361)43443048482490359Rat
1558651Swd3Spike wave discharge measurement QTL 34.620.000024brain electrophysiology trait (VT:0010557)brain spike-and-wave discharge frequency (CMO:0001742)45843213392991462Rat
1358203Stl19Serum triglyceride level QTL 192.80.002blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)4521829465958103Rat
1641833Alc21Alcohol consumption QTL 218.60.0001drinking behavior trait (VT:0001422)ethanol drink intake rate (CMO:0001407)456698790126192555Rat
631674Iddm14Insulin dependent diabetes mellitus QTL 14blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)464528739157573521Rat
631546Bp86Blood pressure QTL 863.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)45711443291360801Rat
6478743Anxrr40Anxiety related response QTL 400.83076defecation behavior trait (VT:0010462)defecation rate (CMO:0000998)462753847107753847Rat
7394826Bw126Body weight QTL 1260.002body mass (VT:0001259)body weight gain (CMO:0000420)46293326987483707Rat
12798520Anxrr55Anxiety related response QTL 554.450.01locomotor behavior trait (VT:0001392)number of rearing movements with lid-pushing in an experimental apparatus (CMO:0002715)432583980114627242Rat
631671Iddm11Insulin dependent diabetes mellitus QTL 113.60.0012blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)45863587778886137Rat


Additional Information

RGD Curation Notes
Note Type Note Reference
qtl_general number of animals used: 19 parental GK, 20 parental F344, 37 F1 and 206 F2 rats 5684953
qtl_general lineage: F1 animals from both the reciprocal crosses were used; 2 seperate F2 intercrosses were generated, one from grandmaternal GK and grandpaternal F344, the other from grandmaternal F344 and grandpaternal GK 5684953
qtl_general measurement method: at 215 days (mean age) rats kept under controlled conditions were sacrificed and left tibia was subjected to two-dimensional dual energy X-ray absorptiometry using a PIXImusTM densitometer (GE Lunar, Madison, WI) 5684953
qtl_general software used: bone mineral content measured using GE Lunar software 5684953
qtl_general this region (36-48 cM) is determined in grandmaternal GK and grandpaternal F344 F2 female rats 5684953