Wasl (WASP like actin nucleation promoting factor) - Rat Genome Database

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Gene: Wasl (WASP like actin nucleation promoting factor) Rattus norvegicus
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Symbol: Wasl
Name: WASP like actin nucleation promoting factor
RGD ID: 735144
Description: Enables cytoskeletal protein binding activity and identical protein binding activity. Involved in several processes, including plasma membrane tubulation; positive regulation of cellular component organization; and postsynaptic actin cytoskeleton organization. Located in Golgi membrane; cell leading edge; and cytoplasmic vesicle. Is active in glutamatergic synapse and postsynapse. Orthologous to human WASL (WASP like actin nucleation promoting factor); PARTICIPATES IN ephrin - ephrin receptor bidirectional signaling axis; epidermal growth factor/neuregulin signaling pathway; platelet-derived growth factor signaling pathway; INTERACTS WITH 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: actin nucleation-promoting factor WASL; hypothetical protein LOC685687; IQ motif and ubiquitin domain containing; Iqub; LOC682507; MGC116166; N-WASP; neural Wiskott-Aldrich syndrome protein; similar to Neural Wiskott-Aldrich syndrome protein (N-WASP); TRS4; Wiskott-Aldrich syndrome-like; Wiskott-Aldrich syndrome-like (human)
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8454,049,081 - 54,097,653 (-)NCBIGRCr8
mRatBN7.2453,083,536 - 53,132,061 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl453,083,536 - 53,132,022 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx458,070,385 - 58,118,872 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0453,977,276 - 54,025,972 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0452,411,758 - 52,460,472 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0451,677,722 - 51,726,212 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl451,677,722 - 51,726,212 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0451,455,978 - 51,504,496 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4451,063,710 - 51,092,848 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1451,294,288 - 51,323,128 (-)NCBI
Celera448,249,249 - 48,297,692 (-)NCBICelera
Cytogenetic Map4q22NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


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Original Reference(s)
WaslRatpleomorphic xanthoastrocytoma  ISOWASL (Homo sapiens)8554872ClinVar Annotator: match by term: Pleomorphic xanthoastrocytomaClinVarPMID:28299358
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WaslRatChemical and Drug Induced Liver Injury  ISOWASL (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:25226513
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Original Reference(s)
WaslRatatopic dermatitis  ISSWasl (Mus musculus)13592920OMIM:603165MouseDO 

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Original Reference(s)
WaslRat1,2-dimethylhydrazine decreases expressionISOWasl (Mus musculus)64804641 and 2-Dimethylhydrazine results in decreased expression of WASL mRNACTDPMID:22206623
WaslRat17beta-estradiol decreases expressionEXP 6480464Estradiol results in decreased expression of WASL mRNACTDPMID:32145629
WaslRat2,2',4,4'-Tetrabromodiphenyl ether decreases expressionISOWASL (Homo sapiens)64804642 more ...CTDPMID:31675489
WaslRat2,3,7,8-tetrachlorodibenzodioxine affects expressionISOWasl (Mus musculus)6480464Tetrachlorodibenzodioxin affects the expression of WASL mRNACTDPMID:21570461
WaslRat2,3,7,8-tetrachlorodibenzodioxine decreases expressionEXP 6480464Tetrachlorodibenzodioxin results in decreased expression of WASL mRNACTDPMID:33387578
WaslRat2,3,7,8-tetrachlorodibenzodioxine increases expressionEXP 6480464Tetrachlorodibenzodioxin results in increased expression of WASL mRNACTDPMID:34747641
WaslRat2,4,6-tribromophenol decreases expressionISOWASL (Homo sapiens)64804642 more ...CTDPMID:31675489
WaslRat2-hydroxypropanoic acid decreases expressionISOWASL (Homo sapiens)6480464Lactic Acid results in decreased expression of WASL mRNACTDPMID:30851411
WaslRat3,3',5,5'-tetrabromobisphenol A decreases expressionISOWASL (Homo sapiens)6480464tetrabromobisphenol A results in decreased expression of WASL proteinCTDPMID:31675489
WaslRat6-propyl-2-thiouracil decreases expressionEXP 6480464Propylthiouracil results in decreased expression of WASL mRNACTDPMID:24780913
WaslRataflatoxin B1 decreases methylationISOWASL (Homo sapiens)6480464Aflatoxin B1 results in decreased methylation of WASL geneCTDPMID:27153756
WaslRatAflatoxin B2 alpha increases methylationISOWASL (Homo sapiens)6480464aflatoxin B2 results in increased methylation of WASL intronCTDPMID:30157460
WaslRatantirheumatic drug increases expressionISOWASL (Homo sapiens)6480464Antirheumatic Agents results in increased expression of WASL mRNACTDPMID:24449571
WaslRatarsane multiple interactionsISOWASL (Homo sapiens)6480464[sodium arsenite results in increased abundance of Arsenic] which results in increased expression of WASL mRNACTDPMID:39836092
WaslRatarsenic atom multiple interactionsISOWASL (Homo sapiens)6480464[sodium arsenite results in increased abundance of Arsenic] which results in increased expression of WASL mRNACTDPMID:39836092
WaslRatarsenite(3-) decreases methylationISOWASL (Homo sapiens)6480464arsenite results in decreased methylation of WASL promoterCTDPMID:23974009
WaslRatarsenite(3-) increases expressionISOWasl (Mus musculus)6480464arsenite results in increased expression of WASL proteinCTDPMID:37955338
WaslRatbenzo[a]pyrene multiple interactionsISOWasl (Mus musculus)6480464[Benzo(a)pyrene co-treated with benz(a)anthracene co-treated with benzo(b)fluoranthene co-treated with chrysene] results in decreased expression of WASL mRNACTDPMID:27858113
WaslRatbenzo[a]pyrene increases methylationISOWASL (Homo sapiens)6480464Benzo(a)pyrene results in increased methylation of WASL promoterCTDPMID:27901495
WaslRatbenzo[b]fluoranthene multiple interactionsISOWasl (Mus musculus)6480464[Benzo(a)pyrene co-treated with benz(a)anthracene co-treated with benzo(b)fluoranthene co-treated with chrysene] results in decreased expression of WASL mRNACTDPMID:27858113

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Biological Process
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Original Reference(s)
WaslRatactin cytoskeleton organization involved_inIEAARBA:ARBA000282091600115GO_REF:0000117UniProtGO_REF:0000117
WaslRatactin cytoskeleton organization acts_upstream_of_or_withinISOWasl (Mus musculus)1624291 PMID:21874009RGDPMID:21874009
WaslRatactin filament organization involved_inIEAInterPro:IPR0110261600115GO_REF:0000002InterProGO_REF:0000002
WaslRatactin filament polymerization involved_inISSUniProtKB:O004011600115GO_REF:0000024UniProtGO_REF:0000024
WaslRatactin filament polymerization involved_inISOWASL (Homo sapiens)1624291 PMID:16767080RGDPMID:16767080
WaslRatcell division involved_inIEAUniProtKB-KW:KW-01321600115GO_REF:0000043UniProtGO_REF:0000043
WaslRatcell projection assembly NOT|acts_upstream_of_or_withinISOWasl (Mus musculus)1624291MGI:2159338 PMID:11559594RGDPMID:11559594
WaslRatdendritic spine morphogenesis involved_inISSUniProtKB:Q91YD91600115GO_REF:0000024UniProtGO_REF:0000024
WaslRatdendritic spine morphogenesis involved_inISOWasl (Mus musculus)1624291 PMID:25851601RGDPMID:25851601
WaslRatmembrane invagination involved_inIDA 8554834PMID:20730103BHF-UCL 
WaslRatnegative regulation of lymphocyte migration involved_inISOWASL (Homo sapiens)1624291 PMID:22585739RGDPMID:22585739
WaslRatnegative regulation of membrane tubulation involved_inISOWASL (Homo sapiens)1624291 PMID:18388313RGDPMID:18388313
WaslRatplasma membrane tubulation involved_inIDA 8554834PMID:20730103BHF-UCL 
WaslRatpositive regulation of chemotaxis  IMP 11534988 RGD 
WaslRatpositive regulation of clathrin-dependent endocytosis involved_inIDA 8554834PMID:20730103BHF-UCL 
WaslRatpositive regulation of filopodium assembly involved_inIDA 8554834PMID:20730103BHF-UCL 
WaslRatpositive regulation of transcription by RNA polymerase II involved_inISSUniProtKB:O004011600115GO_REF:0000024UniProtGO_REF:0000024
WaslRatpositive regulation of transcription by RNA polymerase II involved_inISOWASL (Homo sapiens)1624291 PMID:16767080RGDPMID:16767080
WaslRatpostsynapse organization involved_inEXP 2306201PMID:18430734SynGO 
WaslRatpostsynapse organization involved_inIDA 2306201PMID:18430734SynGO 
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Cellular Component
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Original Reference(s)
WaslRatactin cap located_inISOWasl (Mus musculus)1624291 PMID:21874009RGDPMID:21874009
WaslRatcell leading edge  IDA 11530051 RGD 
WaslRatcytoplasm located_inIEAUniProtKB-KW:KW-09631600115GO_REF:0000043UniProtGO_REF:0000043
WaslRatcytoplasm located_inIEAUniProtKB-SubCell:SL-00861600115GO_REF:0000044UniProtGO_REF:0000044
WaslRatcytoplasmic vesicle located_inIDA 8554834PMID:20730103BHF-UCL 
WaslRatcytoskeleton located_inIEAUniProtKB-SubCell:SL-00901600115GO_REF:0000044UniProtGO_REF:0000044
WaslRatcytoskeleton located_inIEAUniProtKB-KW:KW-02061600115GO_REF:0000043UniProtGO_REF:0000043
WaslRatcytosol located_inTAS 1600115Reactome:R-NUL-442561ReactomeReactome:R-NUL-442561
WaslRatcytosol located_inISOWASL (Homo sapiens)1624291 PMID:18388313RGDPMID:18388313
WaslRatglutamatergic synapse is_active_inIMP 2306201PMID:18430734SynGO 
WaslRatglutamatergic synapse is_active_inISOWasl (Mus musculus)1624291 PMID:25851601RGDPMID:25851601
WaslRatglutamatergic synapse is_active_inEXP 2306201PMID:18430734SynGO 
WaslRatglutamatergic synapse is_active_inIDA 2306201PMID:18430734SynGO 
WaslRatGolgi membrane  IDA 2306211 RGD 
WaslRatlamellipodium located_inISOWasl (Mus musculus)1624291 PMID:15148305RGDPMID:15148305
WaslRatnucleus located_inISOWASL (Homo sapiens)1624291 PMID:16767080RGDPMID:16767080
WaslRatnucleus located_inISSUniProtKB:O004011600115GO_REF:0000024UniProtGO_REF:0000024
WaslRatnucleus located_inIEAUniProtKB-SubCell:SL-01911600115GO_REF:0000044UniProtGO_REF:0000044
WaslRatnucleus located_inIEAUniProtKB-KW:KW-05391600115GO_REF:0000043UniProtGO_REF:0000043
WaslRatplasma membrane is_active_inIBAMGI:2142186 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
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Molecular Function
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Original Reference(s)
WaslRatactin binding enablesIEAUniProtKB-KW:KW-00091600115GO_REF:0000043UniProtGO_REF:0000043
WaslRatactin binding enablesIEAInterPro:IPR0031241600115GO_REF:0000002InterProGO_REF:0000002
WaslRatcytoskeletal protein binding  IPIActr3 (Rattus norvegicus)11530040 RGD 
WaslRatidentical protein binding enablesIPIUniProtKB:O088168553880PMID:9422512IntAct 
WaslRatidentical protein binding enablesIPIUniProtKB:O088168554368PMID:11052943IntAct 
WaslRatidentical protein binding enablesIPIUniProtKB:O0881613432332PMID:18650806IntAct 
WaslRatprotein binding enablesISOWasl (Mus musculus)1624291PR:Q61644 more ...RGDPMID:11082044 more ...
WaslRatprotein binding enablesIPIUniProtKB:P0DJ8813432332PMID:18650806IntAct 
WaslRatprotein binding enablesIPIUniProtKB:P609538553880PMID:9422512IntAct 
WaslRatprotein binding enablesIPIUniProtKB:P077378554733PMID:9822597IntAct 
WaslRatprotein binding enablesIPIUniProtKB:Q8X48221201258PMID:17451412IntAct 
WaslRatprotein binding enablesIPIUniProtKB:P350808554733PMID:9822597IntAct 
WaslRatprotein binding enablesISOWASL (Homo sapiens)1624291UniProtKB:A0A0S2Z4D7 more ...RGDPMID:11231575 more ...
WaslRatprotein binding enablesIPIUniProtKB:Q8X48221201262PMID:15296718IntAct 
WaslRatprotein binding enablesIPIUniProtKB:Q6059821201251PMID:15169891IntAct 
WaslRatprotein binding enablesIPIUniProtKB:Q8IVI98553869PMID:16234328IntAct 
WaslRatprotein binding enablesIPIUniProtKB:Q6059821201258PMID:17451412IntAct 
WaslRatprotein binding enablesIPIUniProtKB:Q5T0N58554834PMID:20730103BHF-UCL 
WaslRatprotein binding enablesIPIUniProtKB:Q96RF08554247PMID:20427313UniProt 
WaslRatprotein binding enablesIPIUniProtKB:Q8X48221201270PMID:18974829IntAct 
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Imported Annotations - KEGG (archival)

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Original Reference(s)
WaslRatchemokine mediated signaling pathway  IEA 6907045 KEGGrno:04062
WaslRatFc gamma receptor mediated signaling pathway  IEA 6907045 KEGGrno:04666

Imported Annotations - PID (archival)


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#
Reference Title
Reference Citation
1. Abl silencing inhibits CAS-mediated process and constriction in resistance arteries. Anfinogenova Y, etal., Circ Res. 2007 Aug 17;101(4):420-8. Epub 2007 Jul 5.
2. Cdc42 interaction with N-WASP and Toca-1 regulates membrane tubulation, vesicle formation and vesicle motility: implications for endocytosis. Bu W, etal., PLoS One. 2010 Aug 13;5(8):e12153. doi: 10.1371/journal.pone.0012153.
3. EspFU is a translocated EHEC effector that interacts with Tir and N-WASP and promotes Nck-independent actin assembly. Campellone KG, etal., Dev Cell. 2004 Aug;7(2):217-28. doi: 10.1016/j.devcel.2004.07.004.
4. Repetitive N-WASP-binding elements of the enterohemorrhagic Escherichia coli effector EspF(U) synergistically activate actin assembly. Campellone KG, etal., PLoS Pathog. 2008 Oct;4(10):e1000191. doi: 10.1371/journal.ppat.1000191. Epub 2008 Oct 31.
5. Tyrosine phosphorylation controls cortactin binding to two enterohaemorrhagic Escherichia coli effectors: Tir and EspFu/TccP. Cantarelli VV, etal., Cell Microbiol. 2007 Jul;9(7):1782-95. doi: 10.1111/j.1462-5822.2007.00913.x. Epub 2007 Apr 19.
6. Cytosol-derived proteins are sufficient for Arp2/3 recruitment and ARF/coatomer-dependent actin polymerization on Golgi membranes. Chen JL, etal., FEBS Lett. 2004 May 21;566(1-3):281-6.
7. N-WASP and cortactin are involved in invadopodium-dependent chemotaxis to EGF in breast tumor cells. Desmarais V, etal., Cell Motil Cytoskeleton. 2009 Jun;66(6):303-16. doi: 10.1002/cm.20361.
8. Identification of N-WASP homologs in human and rat brain. Fukuoka M, etal., Gene 1997 Sep 1;196(1-2):43-8.
9. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
10. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
11. NOSTRIN functions as a homotrimeric adaptor protein facilitating internalization of eNOS. Icking A, etal., J Cell Sci. 2005 Nov 1;118(Pt 21):5059-69. Epub 2005 Oct 18.
12. Syndapins integrate N-WASP in receptor-mediated endocytosis. Kessels MM and Qualmann B, EMBO J 2002 Nov 15;21(22):6083-94.
13. SPIN90/WISH interacts with PSD-95 and regulates dendritic spinogenesis via an N-WASP-independent mechanism. Lee S, etal., EMBO J. 2006 Oct 18;25(20):4983-95. Epub 2006 Sep 21.
14. Focal adhesion kinase-Tyr407 and -Tyr397 exhibit antagonistic effects on blood-testis barrier dynamics in the rat. Lie PP, etal., Proc Natl Acad Sci U S A. 2012 Jul 31;109(31):12562-7. doi: 10.1073/pnas.1202316109. Epub 2012 Jul 12.
15. Erk/Src phosphorylation of cortactin acts as a switch on-switch off mechanism that controls its ability to activate N-WASP. Martinez-Quiles N, etal., Mol Cell Biol. 2004 Jun;24(12):5269-80. doi: 10.1128/MCB.24.12.5269-5280.2004.
16. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
17. Induction of filopodium formation by a WASP-related actin-depolymerizing protein N-WASP. Miki H, etal., Nature. 1998 Jan 1;391(6662):93-6.
18. SNX18 shares a redundant role with SNX9 and modulates endocytic trafficking at the plasma membrane. Park J, etal., J Cell Sci. 2010 May 15;123(Pt 10):1742-50. doi: 10.1242/jcs.064170. Epub 2010 Apr 27.
19. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
20. PID Annotation Import Pipeline Pipeline to import Pathway Interaction Database annotations from NCI into RGD
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PMID:9950691   PMID:10704453   PMID:11559594   PMID:11584276   PMID:12477932   PMID:14732713   PMID:15148305   PMID:15489334   PMID:15664188   PMID:15791211   PMID:15797550   PMID:16767080  
PMID:16885158   PMID:17049400   PMID:17092940   PMID:17229736   PMID:17350575   PMID:17405146   PMID:17635999   PMID:17681954   PMID:18362183   PMID:18388313   PMID:19056867   PMID:19379711  
PMID:19509061   PMID:19759398   PMID:21464958   PMID:21874009   PMID:22250195   PMID:22389406   PMID:22585739   PMID:22966049   PMID:23376485   PMID:23750457   PMID:23843614   PMID:25321392  
PMID:25851601   PMID:26554011   PMID:31859439   PMID:37296607  



Wasl
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8454,049,081 - 54,097,653 (-)NCBIGRCr8
mRatBN7.2453,083,536 - 53,132,061 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl453,083,536 - 53,132,022 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx458,070,385 - 58,118,872 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0453,977,276 - 54,025,972 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0452,411,758 - 52,460,472 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0451,677,722 - 51,726,212 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl451,677,722 - 51,726,212 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0451,455,978 - 51,504,496 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4451,063,710 - 51,092,848 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1451,294,288 - 51,323,128 (-)NCBI
Celera448,249,249 - 48,297,692 (-)NCBICelera
Cytogenetic Map4q22NCBI
WASL
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh387123,681,943 - 123,749,003 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl7123,681,943 - 123,749,003 (-)EnsemblGRCh38hg38GRCh38
GRCh377123,321,997 - 123,389,057 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 367123,109,233 - 123,176,352 (-)NCBINCBI36Build 36hg18NCBI36
Build 347122,915,949 - 122,983,067NCBI
Celera7118,125,741 - 118,192,900 (-)NCBICelera
Cytogenetic Map7q31.32NCBI
HuRef7117,685,121 - 117,752,321 (-)NCBIHuRef
CHM1_17123,255,296 - 123,322,481 (-)NCBICHM1_1
T2T-CHM13v2.07124,998,697 - 125,065,742 (-)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v27122,710,608 - 122,777,749 (-)NCBI
Wasl
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39624,613,809 - 24,665,185 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl624,613,804 - 24,665,008 (-)EnsemblGRCm39 Ensembl
GRCm38624,613,810 - 24,664,995 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl624,613,805 - 24,665,009 (-)EnsemblGRCm38mm10GRCm38
MGSCv37624,563,810 - 24,614,995 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36624,563,815 - 24,614,981 (-)NCBIMGSCv36mm8
Celera624,624,846 - 24,676,054 (-)NCBICelera
Cytogenetic Map6A3.1NCBI
cM Map611.28NCBI
Wasl
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554795,166,393 - 5,200,512 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554795,167,851 - 5,200,512 (-)NCBIChiLan1.0ChiLan1.0
WASL
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v26160,537,416 - 160,606,388 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1712,550,222 - 12,614,145 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v07115,675,170 - 115,741,498 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.17128,357,909 - 128,388,395 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl7128,360,495 - 128,385,393 (-)Ensemblpanpan1.1panPan2
WASL
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11411,828,298 - 11,901,190 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1411,828,687 - 11,899,788 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1411,512,373 - 11,585,271 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01411,605,958 - 11,678,914 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1411,606,343 - 11,678,904 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11411,795,524 - 11,868,439 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01411,533,495 - 11,606,377 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01411,774,079 - 11,846,981 (+)NCBIUU_Cfam_GSD_1.0
Wasl
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440511850,387,234 - 50,461,160 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366051,742,776 - 1,816,690 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366051,741,832 - 1,816,694 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
WASL
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1823,722,188 - 23,789,506 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11823,722,188 - 23,789,516 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21825,318,931 - 25,386,518 (+)NCBISscrofa10.2Sscrofa10.2susScr3
WASL
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12192,480,392 - 92,546,725 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2192,482,918 - 92,546,481 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604210,917,558 - 10,985,328 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Wasl
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462478312,254,715 - 12,323,232 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462478312,239,467 - 12,322,403 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

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Variants in Wasl
226 total Variants

Predicted Target Of
Summary Value
Count of predictions:599
Count of miRNA genes:262
Interacting mature miRNAs:340
Transcripts:ENSRNOT00000009261
Prediction methods:Microtar, Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 41 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
2302371Stl22Serum triglyceride level QTL 225.15blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)4521829457114705Rat
2303585Bw86Body weight QTL 864body mass (VT:0001259)body weight (CMO:0000012)41467806559678065Rat
1358352Srcrt3Stress Responsive Cort QTL 32.29blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)438465774146803430Rat
61445Strs3Sensitivity to stroke QTL 33cerebrum integrity trait (VT:0010549)post-insult time to onset of cerebrovascular lesion (CMO:0002343)44043338885433388Rat
6893678Bw108Body weight QTL 1082.60.006body mass (VT:0001259)body weight (CMO:0000012)44345797688457976Rat
8552906Pigfal3Plasma insulin-like growth factor 1 level QTL 3blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)41008408955084089Rat
10755501Bp390Blood pressure QTL 3902.5arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)426775591168368347Rat
1331807Rf31Renal function QTL 312.988urine potassium amount (VT:0010539)urine potassium level (CMO:0000128)43952426474726312Rat
6478766Anxrr47Anxiety related response QTL 470.09637locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)41008408955084089Rat
8552782Vie1Viral induced encephalitis QTL 126.4brain integrity trait (VT:0010579)encephalitis incidence/prevalence measurement (CMO:0002361)43443048482490359Rat

1 to 10 of 41 rows
RH128038  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2453,085,580 - 53,085,797 (+)MAPPERmRatBN7.2
Rnor_6.0451,679,767 - 51,679,983NCBIRnor6.0
Rnor_5.0451,458,023 - 51,458,239UniSTSRnor5.0
Celera448,251,294 - 48,251,510UniSTS
RH 3.4 Map4288.5UniSTS
AI231276  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2453,085,097 - 53,085,268 (+)MAPPERmRatBN7.2
Rnor_6.0451,679,284 - 51,679,454NCBIRnor6.0
Rnor_5.0451,457,540 - 51,457,710UniSTSRnor5.0
Celera448,250,811 - 48,250,981UniSTS
RH 3.4 Map4288.9UniSTS




alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31



Ensembl Acc Id: ENSRNOT00000009261   ⟹   ENSRNOP00000009261
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl453,083,536 - 53,132,022 (-)Ensembl
Rnor_6.0 Ensembl451,677,722 - 51,726,212 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000106852   ⟹   ENSRNOP00000097692
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl453,086,866 - 53,132,022 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000114717   ⟹   ENSRNOP00000091229
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl453,083,550 - 53,131,984 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000116006   ⟹   ENSRNOP00000090815
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl453,101,963 - 53,132,022 (-)Ensembl
RefSeq Acc Id: NM_001110365   ⟹   NP_001103835
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8454,049,082 - 54,097,570 (-)NCBI
mRatBN7.2453,083,536 - 53,132,022 (-)NCBI
Rnor_6.0451,677,722 - 51,726,212 (-)NCBI
Rnor_5.0451,455,978 - 51,504,496 (-)NCBI
RGSC_v3.4451,063,710 - 51,092,848 (-)RGD
Celera448,249,249 - 48,297,692 (-)RGD
Sequence:
RefSeq Acc Id: XM_039108349   ⟹   XP_038964277
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8454,049,081 - 54,097,653 (-)NCBI
mRatBN7.2453,083,540 - 53,132,061 (-)NCBI
Protein RefSeqs NP_001103835 (Get FASTA)   NCBI Sequence Viewer  
  XP_038964277 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDM15175 (Get FASTA)   NCBI Sequence Viewer  
  EDM15176 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000009261
  ENSRNOP00000103171
GenBank Protein O08816 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_001103835   ⟸   NM_001110365
- UniProtKB: O08816 (UniProtKB/Swiss-Prot),   F1LSG0 (UniProtKB/TrEMBL),   A6IE88 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000009261   ⟸   ENSRNOT00000009261
RefSeq Acc Id: XP_038964277   ⟸   XM_039108349
- Peptide Label: isoform X1
- UniProtKB: O08816 (UniProtKB/Swiss-Prot)
Ensembl Acc Id: ENSRNOP00000097692   ⟸   ENSRNOT00000106852
Ensembl Acc Id: ENSRNOP00000090815   ⟸   ENSRNOT00000116006
CRIB   WH1   WH2

Name Modeler Protein Id AA Range Protein Structure
AF-O08816-F1-model_v2 AlphaFold O08816 1-501 view protein structure


eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

RGD ID:13692906
Promoter ID:EPDNEW_R3431
Type:initiation region
Name:Wasl_1
Description:Wiskott-Aldrich syndrome-like
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0451,726,177 - 51,726,237EPDNEW


1 to 38 of 38 rows
Database
Acc Id
Source(s)
BioCyc Gene G2FUF-45479 BioCyc
Ensembl Genes ENSRNOG00000006975 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000009261 ENTREZGENE
  ENSRNOT00000140623 ENTREZGENE
Gene3D-CATH 2.30.29.30 UniProtKB/Swiss-Prot
  3.90.810.10 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:7454794 IMAGE-MGC_LOAD
InterPro CRIB_dom UniProtKB/Swiss-Prot
  CRIB_dom_sf UniProtKB/Swiss-Prot
  PH-like_dom_sf UniProtKB/Swiss-Prot
  WASP_C UniProtKB/Swiss-Prot
  WASPfam_EVH1 UniProtKB/Swiss-Prot
  WH1/EVH1_dom UniProtKB/Swiss-Prot
  WH2_dom UniProtKB/Swiss-Prot
MGC_CLONE MGC:116166 IMAGE-MGC_LOAD
NCBI Gene 682507 ENTREZGENE
PANTHER NEURAL WISKOTT-ALDRICH SYNDROME PROTEIN UniProtKB/Swiss-Prot
  SPROUTY-RELATED, EVH1 DOMAIN-CONTAINING PROTEIN FAMILY MEMBER UniProtKB/Swiss-Prot
Pfam PBD UniProtKB/Swiss-Prot
  WH1 UniProtKB/Swiss-Prot
  WH2 UniProtKB/Swiss-Prot
PhenoGen Wasl PhenoGen
PROSITE CRIB UniProtKB/Swiss-Prot
  WH1 UniProtKB/Swiss-Prot
  WH2 UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000006975 RatGTEx
SMART PBD UniProtKB/Swiss-Prot
  WH1 UniProtKB/Swiss-Prot
  WH2 UniProtKB/Swiss-Prot
Superfamily-SCOP PH domain-like UniProtKB/Swiss-Prot
  SSF47912 UniProtKB/Swiss-Prot
UniProt A0A8I6ABN7_RAT UniProtKB/TrEMBL
  A0A8I6AE95_RAT UniProtKB/TrEMBL
  A0A8I6B641_RAT UniProtKB/TrEMBL
  A6IE81_RAT UniProtKB/TrEMBL
  A6IE88 ENTREZGENE, UniProtKB/TrEMBL
  F1LSG0 ENTREZGENE, UniProtKB/TrEMBL
  O08816 ENTREZGENE, UniProtKB/Swiss-Prot
1 to 38 of 38 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-04-02 Wasl  WASP like actin nucleation promoting factor  Wasl  Wiskott-Aldrich syndrome-like  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2013-05-24 Wasl  Wiskott-Aldrich syndrome-like  LOC685687  hypothetical protein LOC685687  Data merged from RGD:1591326 1643240 APPROVED
2009-12-15 Wasl  Wiskott-Aldrich syndrome-like  Iqub  IQ motif and ubiquitin domain containing  Data merged from RGD:2300151 737654 APPROVED
2008-09-22 Wasl  Wiskott-Aldrich syndrome-like  LOC682507  similar to Neural Wiskott-Aldrich syndrome protein (N-WASP)  Data merged from RGD:1597967 737654 APPROVED
2008-03-04 Wasl  Wiskott-Aldrich syndrome-like  Iqub  IQ motif and ubiquitin domain containing  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2007-11-07 Iqub  IQ motif and ubiquitin domain containing  Wasl  Wiskott-Aldrich syndrome-like (human)  Symbol and Name updated 1299863 APPROVED
2006-11-20 LOC682507  similar to Neural Wiskott-Aldrich syndrome protein (N-WASP)      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-11-20 LOC685687  hypothetical protein LOC685687      Symbol and Name status set to provisional 70820 PROVISIONAL
2005-07-08 Wasl  Wiskott-Aldrich syndrome-like (human)  N-WASP  neural Wiskott-Aldrich syndrome protein  Symbol and Name updated 1299863 APPROVED