Niddm71 QTL Report (Rattus norvegicus) - Rat Genome Database

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QTL Registration

QTL: Niddm71 (Non-insulin dependent diabetes mellitus QTL 71) Rattus norvegicus

Symbol: Niddm71
Name: Non-insulin dependent diabetes mellitus QTL 71
RGD ID: 11530004
Trait: blood glucose amount   (VT:0000188)    
Measurement Type: blood glucose level area under curve (AUC)   (CMO:0000350)    
LOD Score: Not Available
P Value: 0.001
Variance: Not Available
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2432,584,199 - 52,754,138RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.0431,554,484 - 51,311,866RGD_MAPPER_PIPELINERnor6.0
Rnor_5.0431,425,512 - 51,088,845RGD_MAPPER_PIPELINERnor5.0
RGSC_v3.4429,414,068 - 50,721,056RGD_MAPPER_PIPELINERGSC3.4
Cross Type: 11 female SBN/y were inter-crossed with 3 male CDs/y rats, F1 progeny were mated brother-to-sister to produce an F2 of 166 male animals.
Strains Crossed: SBN/Ygl CDS/Ygl CDS.CDR-(D4Rat9-D4Rat153)/Ygl 
JBrowse: View Region in Genome Browser (JBrowse)
Model



Candidate Gene Status
Ndufa4 is a candidate Gene for Niddm71

Disease Annotations     Click to see Annotation Detail View

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

Experimental Condition

Measurement Method

Vertebrate Trait

Rat Strain

References

References - curated
# Reference Title Reference Citation
1. Three interacting genomic loci incorporating two novel mutations underlie the evolution of diet-induced diabetes. Yagil Y, etal., Mol Med. 2016 Jul 26;22. doi: 10.2119/molmed.2016.00114.

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
621351Col1a2collagen type I alpha 2 chain43256393832598868Rat
7572472LOC102552043uncharacterized LOC10255204343264282332644911Rat
1596912Casd1CAS1 domain containing 143265919632739228Rat
1303201Sgcesarcoglycan, epsilon43277147732842238Rat
1595574Peg10paternally expressed 1043284244132855639Rat
40975034LOC120102559U4 spliceosomal RNA43292226032922342Rat
1559912Ckap2-ps1cytoskeleton-associated protein 2, pseudogene 143295899232961061Rat
632280Ppp1r9aprotein phosphatase 1, regulatory subunit 9A43297050133292360Rat
620062Pon1paraoxonase 143329473733325759Rat
1302965Pon3paraoxonase 343335698333383681Rat
1309954Pon2paraoxonase 243338970233425186Rat
1563114Asb4ankyrin repeat and SOCS box-containing 443350699233544630Rat
1591728Vil1-ps1villin 1, pseudogene 143357586133580483Rat
7584396LOC102552448uncharacterized LOC10255244843358265233589860Rat
69061Pdk4pyruvate dehydrogenase kinase 443359179633601798Rat
11435887Rps29-ps20ribosomal protein S29, pseudogene 2043366405033666091Rat
2512Dync1i1dynein cytoplasmic 1 intermediate chain 143385259734166159Rat
1565889Slc25a13solute carrier family 25 member 1343417922434361912Rat
41148263LOC120102562U6 spliceosomal RNA43421018434210290Rat
9376829LOC103692067protein LLP homolog pseudogene43429933134305057Rat
11431277Rpl31l14ribosomal protein L31 like 1443430256234310161Rat
7657264LOC102554854uncharacterized LOC10255485443441491134438788Rat
9229365LOC103692052uncharacterized LOC10369205243443911634447138Rat
41375555LOC120102231uncharacterized LOC12010223143459265234594248Rat
1590628Sem1SEM1 26S proteasome subunit43467184834692005Rat
41211262LOC120102776U4 spliceosomal RNA43469280334692885Rat
1566237Rpl35-ps9ribosomal protein L35, pseudogene 943487396834874422Rat
6488535LOC100912227uncharacterized LOC10091222743494327134993044Rat
1561539Dlx6distal-less homeobox 643498426434989926Rat
2506Dlx5distal-less homeobox 543499913935003504Rat
1305143Sdhaf3succinate dehydrogenase complex assembly factor 343510053335160740Rat
1589400Rps25-ps4ribosomal protein S25, pseudogene 443527172035272156Rat
11453897LOC108350853uncharacterized LOC10835085343529687035304056Rat
3807Tac1tachykinin, precursor 143567918335687180Rat
41397044Set-ps6Set nuclear proto-oncogene, pseudogene 643574428035747371Rat
2162Asnsasparagine synthetase (glutamine-hydrolyzing)43578499535803474Rat
9388809Polr1d-ps1RNA polymerase I and III subunit D, pseudogene 143592757835928571Rat
621105C1galt1core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase, 143593098135966100Rat
40976402LOC120102629small nucleolar RNA SNORA3/SNORA45 family43596972735969848Rat
7526246LOC102550307uncharacterized LOC10255030743601868036040591Rat
1564680Col28a1collagen type XXVIII alpha 1 chain43606998036223128Rat
1308432Miosmeiosis regulator for oocyte development43626341936289546Rat
1306810Rpa3replication protein A343630464936307755Rat
1563612Glcci1glucocorticoid induced 143630795636635614Rat
621465Ica1islet cell autoantigen 143665647536804705Rat
7715339LOC102550643uncharacterized LOC10255064343678088436787735Rat
3218Nxph1neurexophilin 143699806837311135Rat
41319059LOC120102653small nucleolar RNA SNORA4843748469037484833Rat
1585861Nsa2-ps9NSA2 ribosome biogenesis factor, pseudogene 943756118837561974Rat
1565400Actc1-ps1actin, alpha, cardiac muscle 1, pseudogene 143762082037622087Rat
3600Rps4x-ps9ribosomal protein S4, X-linked, pseudogene 943775837337759289Rat
1560448Yae1l1YAE1 maturation factor of ABCE1 like 143791783737918511Rat
2322347Tomm20-ps2translocase of outer mitochondrial membrane 20, pseudogene 243801322738013802Rat
11516558LOC10835085540S ribosomal protein S23 pseudogene43826319438263628Rat
1585825Hmgn1l1high mobility group nucleosomal binding domain 1 like 143860485638606026Rat
40971411LOC120102154uncharacterized LOC12010215443864163538646263Rat
41248065LOC120102234uncharacterized LOC12010223443890194838907419Rat
2322154Psma6-ps3proteasome 20S subunit alpha 6, pseudogene 343919157039192321Rat
1562387Gtpbp4-ps3GTP binding protein 4, pseudogene 343939107939425066Rat
7596691LOC102547989uncharacterized LOC10254798943959860439678420Rat
40982246LOC120102694small nucleolar RNA SNORA1743973394139734060Rat
1584730Stmnl-ps2stathmin like, pseudogene 243976968439770132Rat
1584719Ndufa4Ndufa4, mitochondrial complex associated44000221640009384Rat
1563764Phf14PHD finger protein 1444000969140195877Rat
41002968LOC120102235uncharacterized LOC12010223544011938740123944Rat
41140158LOC120102687small nucleolar RNA SNORA1744030905740309173Rat
1566201Thsd7athrombospondin type 1 domain containing 7A44046112440899345Rat
7641224Rps2-ps40ribosomal protein S2, pseudogene 4044068219240683121Rat
9330178LOC10369207460 kDa heat shock protein, mitochondrial pseudogene44072136940732042Rat
11363596LOC108350856uncharacterized LOC10835085644093701340945223Rat
1587202Pkm-ps19pyruvate kinase M1/2, pseudogene 1944115613841277227Rat
1303037Tmem106btransmembrane protein 106B44132812541347315Rat
1561223Vwdevon Willebrand factor D and EGF domains44145357341525421Rat
1583532Gnpnat1-ps1glucosamine-phosphate N-acetyltransferase 1, pseudogene 144154887241549774Rat
1564521Tas2r7ltaste receptor type 2 member 7-like44156953641570447Rat
7609534LOC102548489uncharacterized LOC10254848944169446041701116Rat
6493676LOC100911252peptidyl-prolyl cis-trans isomerase A-like44182887341829619Rat
1307778Tmem168transmembrane protein 16844183062341858763Rat
41264909LOC120102634small nucleolar RNA SNORA4444186943541869561Rat
7545679Lyrm4-ps1LYR motif containing 4, pseudogene 144187003941878699Rat
1588441Bmt2base methyltransferase of 25S rRNA 2 homolog44188163041945472Rat
41065803LOC120102155uncharacterized LOC12010215544198883241995216Rat
71011Gpr85G protein-coupled receptor 8544210013842109584Rat
2322826Smim30l1small integral membrane protein 30 like 144214169642143340Rat
2323857Plscr2-ps1phospholipid scramblase 2, pseudogene 144223615742358953Rat
41230048LOC120102706small nucleolar RNA SNORA1744239883242398962Rat
1597981Hnrnpa1-ps53heterogeneous nuclear ribonucleoprotein A1, pseudogene 5344246088042461983Rat
41017590Rnu6-210RNA, U6 small nuclear 21044272163142721733Rat
1561312Ppp1r3aprotein phosphatase 1, regulatory subunit 3A44293735342980195Rat
1559697Foxp2forkhead box P244313382743712442Rat
1585845Rbmxl1bRbmx like 1B44395627543957957Rat
1309532MdficMyoD family inhibitor domain containing44397231044052162Rat
41011912LOC120102753U2 spliceosomal RNA44418613544186318Rat
1562178Ak2-ps3adenylate kinase 2, pseudogene 344496660644967403Rat
3846Tfectranscription factor EC44510612945180236Rat
41270777LOC120102238uncharacterized LOC12010223844525441545365272Rat
1566346Testestin LIM domain protein44536530445403829Rat
7512277LOC102550644uncharacterized LOC10255064444546330045616095Rat
620348Cav2caveolin 244561676645624144Rat
2280Cav1caveolin 144564062445673708Rat
9112364LOC103692063uncharacterized LOC10369206344568273545711751Rat
7671121LOC102550745uncharacterized LOC10255074544571182445736550Rat
3082MetMET proto-oncogene, receptor tyrosine kinase44579045645898139Rat
1549770Capza2capping actin protein of muscle Z-line subunit alpha 244597814246014032Rat
1303148ST7suppression of tumorigenicity 744604165546289745Rat
41017039LOC12010244460S ribosomal protein L23a-like44614691746153007Rat
621346Wnt2Wnt family member 244632840846374673Rat
621579Asz1ankyrin repeat, SAM and basic leucine zipper domain containing 144640048546456085Rat
2332CftrCF transmembrane conductance regulator44656126946728759Rat
41373703LOC120102563U6 spliceosomal RNA44675272146752827Rat
628691Cttnbp2cortactin binding protein 244680097546964681Rat
41325296LOC120102241uncharacterized LOC12010224144690628746931844Rat
1566227U2surp-ps1U2 snRNP-associated SURP domain containing, pseudogene 144700588447008963Rat
1308442Lsm8LSM8 homolog, U6 small nuclear RNA associated44730625947312125Rat
1564660Ankrd7ankyrin repeat domain 744731227047336754Rat
1597712Pdia6l1protein disulfide isomerase family A, member 6 like 144760658247607800Rat
11453204LOC108350673uncharacterized LOC10835067344874646548832870Rat
1588440Rpl7al1ribosomal protein L7A like 144899400148996804Rat
41283447LOC120102623small nucleolar RNA SNORA7244956519549565318Rat
2321181Nid2-ps1nidogen 2, pseudogene 144963262849633166Rat
7531073Kcnd2l1potassium voltage-gated channel subfamily D member 2 like 144977514649777251Rat
68393Kcnd2potassium voltage-gated channel subfamily D member 244977581250277746Rat
9383752LOC10369208160S ribosomal protein L3 pseudogene44999112250003764Rat
9374544Sdad1-ps1SDA1 domain containing 1, pseudogene 145000501450017758Rat
1311102Tspan12tetraspanin 1245031376850389246Rat
1310556Ing3inhibitor of growth family, member 345047795450505168Rat
1563491Cped1cadherin-like and PC-esterase domain containing 145051671250789651Rat
1562253Wnt16Wnt family member 1645082096850831380Rat
735193Fam3cFAM3 metabolism regulating signaling molecule C45083992950887276Rat
40966555Rps2-ps30ribosomal protein S2, pseudogene 3045118082051181483Rat
2323280Ddx50-ps1DExD-box helicase 50, pseudogene 145122310151296237Rat
3455Ptprz1protein tyrosine phosphatase, receptor type Z145139731651595220Rat
1310811Aassaminoadipate-semialdehyde synthase45160646151663136Rat
1593790Rps3-ps7ribosomal protein S3, pseudogene 745168221851683038Rat
9348766LOC10369208460S ribosomal protein L27 pseudogene45174224651742683Rat
1560480Fezf1Fez family zinc finger 145176275151766078Rat
1559440Cadps2calcium dependent secretion activator 245178041552309641Rat
1596695Rnf133ring finger protein 13345214058452143357Rat
1595417Rnf148ring finger protein 14845214579852152508Rat
11494192LOC108350675uncharacterized LOC10835067545230586952306706Rat
620735Tas2r118taste receptor, type 2, member 11845244920852450107Rat
61919Slc13a1solute carrier family 13 member 145256917952647126Rat
41390060Thrap3-ps3thyroid hormone receptor associated protein 3, pseudogene 345261899952623801Rat
1591364Impdh2-ps1inosine monophosphate dehydrogenase 2, pseudogene 145273881252740348Rat

Markers in Region
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolExpected SizeChrStartStopSpeciesMatch
34238D4Mgh225043952426439524530Ratregion
34716D4Mgh1413343950527539505420Ratregion
36037D4Rat1313944199617341996312Ratregion
37752D4Rat8918343644394736444128Ratregion
37948D4Rat10016843522511535225281Ratregion
36530D4Rat1713944839566048395759Ratregion
34967D4Rat1516245011984850119996Ratregion
35160D4Rat1113143640514636405277Ratregion
35625D4Rat1417944446372044463908Ratregion
35847D4Rat1214643846577438465927Ratregion
39688D4Rat21110644019349640193597Ratregion
39918D4Rat15521944952467449524880Ratregion
38434D4Rat13413945275413852754255Ratregion
38440D8Rat10921743438534834385554Ratregion
38628D4Rat13022243865742738657645Ratregion
39980D4Rat15622144917811649178333Ratregion
40008D4Rat22422345136763751367850Ratregion
40162D4Rat21012543464711334647234Ratregion
39110D4Rat10123344913190649132093Ratregion
39194D4Rat11524043717795037178180Ratregion
39548D4Rat15420344803565448035857Ratregion
42156D4Arb2532043443011934430484Ratregion
42158D4Arb2613043950527539505418Ratregion
41202D4Rat15219744078009840780283Ratregion
42690D4Rat25222543630326136303483Ratregion
42691D4Rat22321243884718238847397Ratregion
42691D4Rat22321243884718238847569Ratregion
41102D4Rat15123543258398032584199Ratregion
41888D4Rat28224544086875240869000Ratregion
41902D4Rat25321044724167547241885Ratregion
43782D4Got2017943854696138547140Ratregion
43783D4Got2116643723314237233308Ratregion
43784D4Got15714743773361237733759Ratregion
43786D4Got2423943831722238317461Ratregion
43787D4Got2517643896180238961978Ratregion
43788D4Got2724744246796842468215Ratregion
43789D4Got3218945079114750791338Ratregion
43790D4Got3413344603747946037612Ratregion
43791D4Got2927544994382349944098Ratregion
43794D4Got14622744711539047115617Ratregion
60433D4Got1926743644075636441020Ratregion
60435D4Got229043687397336874063Ratregion
60436D4Got2629844019331240193610Ratregion
60438D4Got3026345114149051141755Ratregion
625773D4Got2317343854696938547140Ratregion
629591D4Hmgc115944672719146727354Ratregion
66667D4Mco131644594826945948595Ratregion
67352D4Arb1717443775307137753245Ratregion
1631920D4Got28114543346231433462458Ratregion
1627175D4Uia1043928891439289215Ratregion
1641681D4Got20522243675010136750323Ratregion
1636261D4Got28621243304435733044568Ratregion
1636357D4Got26519143464295934643150Ratregion
1636528D2Got33213144970212349702153Ratregion
1636924D4Wox5416644672715946727325Ratregion
1638224D4Got29226643338273033382996Ratregion
1632459D4Got27615143516722435167370Ratregion
1634619D4Got25013944276291542763049Ratregion
7206384fj64a08.x1044510169745102827Ratregion
7241169D4Kini1327143375719333757466Ratregion
7193020Dlx541643499918234999598Ratregion
7193021Dlx56543500316335003228Ratregion
5038824RH12735421743329487433295091Ratregion
5038914RH12740518543335700833357193Ratregion
5036573AU04847316344995639549956437Ratregion
5036875AU04948417944968424349684422Ratregion
5037197RH9182019243498961734989809Ratregion
5025984RH13045718344405177444051957Ratregion
7206128UniSTS:53217111443320470533204819Ratregion
5031516AU04807115244137361441373766Ratregion
5034091RH14133018843285371332853901Ratregion
5034095RH14134218844636575946365947Ratregion
5028913RH14279723444567204645672280Ratregion
5026500RH13245119143259860832598800Ratregion
5029141RH14367412443312854133128665Ratregion
5027111GDB:131795414645195579551955941Ratregion
5027139A005W0915345050310950503262Ratregion
5034960AA80102116443334803433348198Ratregion
5027311AV0059169543358994233590037Ratregion
5035282BF38772015244042285340423004Ratregion
5032955RH13709418143494757434947755Ratregion
5025012AW55010813645178069051780826Ratregion
5033093RH13756619543647304736473242Ratregion
5033123RH13768112145194339751943518Ratregion
5030467BF39786514345177263651772779Ratregion
5025312RH12783621844214200542142223Ratregion
5051188RH13449020243354609933546301Ratregion
5055919RH14407823345015838950158622Ratregion
5054585RH14330929444045571040456004Ratregion
5059420AW53066815143326006133260212Ratregion
5057842BF38624717644731518847315364Ratregion
5054749RH14340314943285230232852451Ratregion
5058554BF39327824043327976133280001Ratregion
5055903RH14406910045139779651397896Ratregion
5055125RH14362017043279601832796188Ratregion
5056687RH14452224744685889646859143Ratregion
5052935RH14235916844183074041830908Ratregion
5052289MDB107115845027845150278609Ratregion
5058368BF41976518743673886836739055Ratregion
5050400RH13403519744496792744968117Ratregion
5057712BF38606316245154219951542361Ratregion
5053919RH14292630044539833345398633Ratregion
5054027RH14298813343354541933545552Ratregion
5051407AI38575210243499939734999499Ratregion
5050890RH13431719943338984133390041Ratregion
5043304RH12994916543578574535785910Ratregion
5043448RH13003119444633402146334214Ratregion
5041164RH12869918544601944746019632Ratregion
5041380RH12882421144731185147312062Ratregion
5045002RH13092719543418016734180571Ratregion
5045212RH13104818944404993944050128Ratregion
5047688RH13247121845256925852569476Ratregion
5047746RH13250520043607007436070274Ratregion
5049168RH13332419043259910532599295Ratregion
5041990RH12917521043647425836474468Ratregion
5047340RH13227119445027815550278349Ratregion
5042484RH12946118043358998833590168Ratregion
5042684RH12958221844183065741830875Ratregion
5041128RH12867820443516051435160718Ratregion
5041326RH12879318244183058041830762Ratregion
5072032RH13542518544134566041345845Ratregion
5075504RH13863215845176845251768610Ratregion
5075682RH13873524043284935332849593Ratregion
5074640RH13813318545027754550277730Ratregion
5076990RH13949619945083878050838979Ratregion
5077036RH13952222043329191433292134Ratregion
5075376RH13855812044632846146328581Ratregion
5077468RH13977418743596573135965918Ratregion
5077590RH13984420744294128342941489Ratregion
5076604RH13927223444589784145898075Ratregion
5076480RH13920020844540340545403612Ratregion
5078246RH14022820244601998746020189Ratregion
5078586RH14042912243329211633292238Ratregion
5079270RH14088420143516051435160715Ratregion
5073408RH13741921244210347342103685Ratregion
5071908RH13535419144015848840158679Ratregion
5072080RH13663918645083280550832991Ratregion
5074358RH13797117545154607551546250Ratregion
5061744BF40286713944359936643599506Ratregion
5066604AU04825920244342807743428279Ratregion
5066768AU04816217744094735740947534Ratregion
5067204AU04789812745038832050388447Ratregion
5068110AU04734212444645689246457015Ratregion
5068462AU04713019644085057940850773Ratregion
5068504AU04710615744535397945354136Ratregion
5068546AU04708123944392530943925548Ratregion
5069022AU04677613044547802745478152Ratregion
5070225RH9454418844510814245108330Ratregion
5069236AU04663019644199616441996360Ratregion
5061882AW53398816244297937742979539Ratregion
5064052BE12056815144076225440762405Ratregion
5060966BF40152917144694905646949227Ratregion
5065844AI04552719344680127546801468Ratregion
5060546BE11030918344371069243710875Ratregion
5066160BF41367617444690924846909422Ratregion
5066188BF40749811644597701145977127Ratregion
5066252PMC126259P312345178047751780600Ratregion
5064674BF39954820044063049440630695Ratregion
5066388AU04838617244397204843972220Ratregion
5064800BF40510024943494352334943772Ratregion
5082091BF40943015443467564934675803Ratregion
5082127AW25190013844187895641879091Ratregion
5087406Col1a219343259721332598399Ratregion
5082621BE11986419345179831551798508Ratregion
5087327BQ19609416444595246145952625Ratregion
5083327BF4178639943699676836996867Ratregion
5088181AU04841629444457608244576378Ratregion
5083349AW52123318545159489951595084Ratregion
5088481AU04859519044995639549956437Ratregion
5089593AU04924725844523229645232556Ratregion
5084546AI41102322145256744052567660Ratregion
5084622AA94648020544567315745673362Ratregion
5084936AI23677221944540339445403612Ratregion
5084974AA80037116443678874836788912Ratregion
5090117AU04956028645226287852263163Ratregion
5084698AI1706789744294041142940508Ratregion
5082773BF39006719245002019450020385Ratregion
5084852AI17943218843258469732584884Ratregion
5086701AA92403820644601364346013849Ratregion
5086793AA89264511543628933936289454Ratregion
5086833AA81920719143259733732598521Ratregion
5502868Dlx555143499926234999813Ratregion
5503025Tes21244539516545395377Ratregion
5503065Wnt1622845083098150831209Ratregion
5503067Wnt1618345083102650831209Ratregion
5507437REN10325625144367232243672573Ratregion
5507439REN10328524644367896343679209Ratregion
5507441REN10328625144367917743679428Ratregion
5507443REN10341323444370637243706606Ratregion
5507445REN10341424644370655343706799Ratregion
5507447REN10340825244370523443705486Ratregion
5507449REN10342325044370841543708665Ratregion
5507451REN10342226644370815243708418Ratregion
5507453REN10342522044370887443709094Ratregion
5507455REN10342426044370863843708898Ratregion
5507457REN10342825344370952043709773Ratregion
5507459REN10342725344370929243709545Ratregion
5507461REN10343124944371029043710539Ratregion
5507463REN10343324844371068843710936Ratregion
5507465REN10364425744375707043757327Ratregion
5507467REN10364924144375826343758504Ratregion
5507469REN10365025544375845643758711Ratregion
5507471REN10371124844377273843772986Ratregion
5507473REN10371225144377297043773221Ratregion
5507475REN10401126144382901643829277Ratregion
5507477REN10544323144420869544208926Ratregion
5507481ECD0408080044346120243462003Ratregion
5507485ECD0461276844345295743453725Ratregion
5507493ECD0608672144375721943757940Ratregion
5507497ECD0669371044364569543646405Ratregion
5507573G6388222444670056446700788Ratregion
5507575G6388019044661284546613035Ratregion
5507577G6387910044659668546596785Ratregion
5507579G6388110144663470546634806Ratregion
5503386CFTR75444672499946725753Ratregion
5503402GDB:131729821543459982034600035Ratregion
5503766STS_ADH227543762119337621465Ratregion
5504520PMC263877P1045261511352616079Ratregion
5505003Wnt225044636694846367198Ratregion
5506082UniSTS:498320116045027490850276068Ratregion
5506278G2054715345050310950503262Ratregion
5506354UniSTS:47894812943762091737621046Ratregion
5506135UniSTS:4984417145159430951594380Ratregion
5506630ECD0020294644367803743678983Ratregion
5506636ECD0036191244368001243680924Ratregion
5506652ECD0129888444367903043679914Ratregion
5506606DLX5_231669343499909334999786Ratregion
5506666ECD0285785144370804743708898Ratregion
5506668ECD0361280344345036943451172Ratregion
5507393REN10220126244344959643449858Ratregion
5507405REN10221325644345247943452735Ratregion
5507413REN10223926244345832043458582Ratregion
5507415REN10225625044346192143462171Ratregion
5507417REN10227722944346671443466943Ratregion
5507419REN10227823644346691943467155Ratregion
5507315G4471411443628866136288775Ratregion
5499533stSG61151824444370522043705464Ratregion
5499535stSG611519123744370546943706706Ratregion
5499537stSG611520143644370668643708122Ratregion
5499531stSG611494109844367904443680142Ratregion
5499529stSG611484125844366756343668821Ratregion
5500242U6688866443316283533163499Ratregion
5500294D20S10048943663525836635347Ratregion
5500310GDB:1803505443258948532590378Ratregion
5500410GDB:5429059543357592433576019Ratregion
5500428REN6225124544687725646877501Ratregion
5500430REN6397622444636804346368267Ratregion
5500432REN6445625344624861346248866Ratregion
5500434REN6465325044620068246200932Ratregion
5500180MT348240144445596244456363Ratregion
5500336GDB:19474862143775860837759229Ratregion
5500340GDB:19474713143775909837759229Ratregion
5503003Fezf16545176573751765802Ratregion
5503124ING3-179045049585550496645Ratregion
5500701RH7977923243663327236633504Ratregion
5500945MARC_9717-9718:996688547:130943500291635003225Ratregion
5500426REN6225223244687704446877276Ratregion
5500452AI72259962545176366951764294Ratregion
5501319ECD1552447444432155944322033Ratregion
5501321ECD1582047444414700944147483Ratregion
5501335ECD2014223444597818045978414Ratregion
5505039Met7044581953945819609Ratregion
5501679UniSTS:26567729344182910041829392Ratregion
5501818MARC_13931-13932:1007579490:149044371020443710694Ratregion
5502684Asb413143351505733515188Ratregion
5507387REN10186024844339051643390764Ratregion
5507389REN10185626844338968343389951Ratregion
5507391REN10219422544344800643448231Ratregion
5507395REN10220225144344983443450085Ratregion
5507397REN102203044345005743450379Ratregion
5507399REN10220424944345037343450622Ratregion
5507401REN10220830344345127943451582Ratregion
5507403REN10221426444345271243452976Ratregion
5507407REN10221524244345295843453200Ratregion
5507409REN10221825844345359043453848Ratregion
5507411REN10221924444345382943454073Ratregion
5507421REN10258525144352484743525098Ratregion
5507423REN10287525144358848343588734Ratregion
5507425REN10311824244363820543638447Ratregion
5507427REN10315624444364621043646454Ratregion
5507429REN10323824744366816843668415Ratregion
5507431REN10324024944366862143668870Ratregion
5507433REN10326625544367449243674747Ratregion
5507435REN10326524144367425543674496Ratregion
5502864Dlx6043498845234989250Ratregion
Position Markers

Flank 1: (D4Rat134)
Rat AssemblyChrPosition (strand)Source
mRatBN7.2452,754,138 - 52,754,255 (+)MAPPER
Rnor_6.0451,311,866 - 51,311,982NCBI
Rnor_5.0451,088,845 - 51,088,961UniSTS
RGSC_v3.4450,721,057 - 50,721,173UniSTS
RGSC_v3.4450,721,056 - 50,721,173RGD
RGSC_v3.1450,951,631 - 50,951,747RGD
Celera447,934,016 - 47,934,132UniSTS
RH 3.4 Map4291.9RGD
RH 3.4 Map4291.9UniSTS
RH 2.0 Map4344.0RGD
SHRSP x BN Map430.57RGD
Flank 2: (D4Rat151)
Rat AssemblyChrPosition (strand)Source
mRatBN7.2432,583,980 - 32,584,199 (+)MAPPER
Rnor_6.0431,554,266 - 31,554,484NCBI
Rnor_6.0429,549,895 - 29,550,113NCBI
Rnor_5.0429,463,219 - 29,463,437UniSTS
Rnor_5.0431,425,294 - 31,425,512UniSTS
RGSC_v3.4429,413,655 - 29,414,068RGD
RGSC_v3.4429,413,686 - 29,413,904UniSTS
RGSC_v3.1429,452,129 - 29,452,347RGD
Celera427,967,860 - 27,968,078UniSTS
RH 3.4 Map4449.82RGD
RH 3.4 Map4449.82UniSTS
RH 2.0 Map4215.3RGD
SHRSP x BN Map417.0799RGD
Cytogenetic Map4q13UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2302371Stl22Serum triglyceride level QTL 225.15blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)4521829457114705Rat
1358352Srcrt3Stress Responsive Cort QTL 32.29blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)438465774146803430Rat
61445Strs3Sensitivity to stroke QTL 33cerebrum integrity trait (VT:0010549)post-insult time to onset of cerebrovascular lesion (CMO:0002343)44043338885433388Rat
6893678Bw108Body weight QTL 1082.60.006body mass (VT:0001259)body weight (CMO:0000012)44345797688457976Rat
1357341Gluco5Glucose level QTL 56.4adipocyte free fatty acid secretion trait (VT:0010465)absolute change in adipocyte free fatty acid secretion per unit volume (CMO:0001446)4133250345Rat
1357343Gluco4Glucose level QTL 40.00002adipocyte glucose uptake trait (VT:0004185)adipocyte maximal glucose uptake to basal glucose uptake ratio (CMO:0000874)4133250345Rat
10450825Scl78Serum cholesterol level QTL 783.70.01blood VLDL cholesterol amount (VT:0005144)blood low density lipoprotein cholesterol level (CMO:0000053)44917811657114705Rat
2313401Anxrr27Anxiety related response QTL 27aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)41793350862933508Rat
10450821Scl77Serum cholesterol level QTL 774.10.01blood VLDL cholesterol amount (VT:0005144)blood high density lipoprotein cholesterol level (CMO:0000052)44917811657114705Rat
10450818Scl76Serum cholesterol level QTL 763.60.01blood VLDL cholesterol amount (VT:0005144)blood high density lipoprotein cholesterol level (CMO:0000052)44917811657114705Rat
631209Bw2Body weight QTL24.2retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)4994088544463908Rat
6909128Pancm4Pancreatic morphology QTL 411.35pancreas mass (VT:0010144)pancreas wet weight (CMO:0000626)42690728575585128Rat
61475Aia2Adjuvant induced arthritis QTL 25.8joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)43950527573892441Rat
8694439Bw168Body weight QTL 1689.570.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)44043341485433414Rat
8655906Rf60Renal function QTL 603.8blood creatinine amount (VT:0005328)creatinine clearance (CMO:0000765)42949419581006281Rat
6909122Insul22Insulin level QTL 224.63blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)42690728575585128Rat
1300156Bp179Blood pressure QTL 1792.85arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)43846577439524530Rat
1354660Salc1Saline consumption QTL 111.26drinking behavior trait (VT:0001422)saline drink intake rate (CMO:0001627)444463908148090542Rat
1298082Stresp4Stress response QTL 4blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)450119848146803430Rat
9590304Scort17Serum corticosterone level QTL 174.960.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)41008408955084089Rat
1300139Hrtrt6Heart rate QTL 62.85heart pumping trait (VT:2000009)heart rate (CMO:0000002)439524264116179656Rat
11530004Niddm71Non-insulin dependent diabetes mellitus QTL 710.001blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)43258419952754138Rat
2316958Gluco58Glucose level QTL 5810blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)411320076180699135Rat
1354665Stl10Serum triglyceride level QTL 103.57blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)42133334344463908Rat
1300141Bp178Blood pressure QTL 178arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)41002490139524530Rat
2303585Bw86Body weight QTL 864body mass (VT:0001259)body weight (CMO:0000012)41467806559678065Rat
8552906Pigfal3Plasma insulin-like growth factor 1 level QTL 3blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)41008408955084089Rat
8655949Rf62Renal function QTL 6222blood urea nitrogen amount (VT:0005265)plasma urea nitrogen level (CMO:0000586)43443011944463908Rat
1331807Rf31Renal function QTL 312.988urine potassium amount (VT:0010539)urine potassium level (CMO:0000128)43952426474726312Rat
6478766Anxrr47Anxiety related response QTL 470.09637locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)41008408955084089Rat
8552782Vie1Viral induced encephalitis QTL 126.4brain integrity trait (VT:0010579)encephalitis incidence/prevalence measurement (CMO:0002361)43443048482490359Rat
70222Eae2Experimental allergic encephalomyelitis QTL 24.3nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)42133334339505420Rat
631642Stl2Serum triglyceride level QTL 23.3blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)4521917856647776Rat
6478769Anxrr48Anxiety related response QTL 480.02514locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)41008408955084089Rat
631261Tcas3Tongue tumor susceptibility QTL 36.88tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)41081417091360527Rat
2312567Glom19Glomerulus QTL 191.90.006kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)445456990146803430Rat
634323Hc2Hypercalciuria QTL 22.15urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)421079645210796Rat
8655961Kidm43Kidney mass QTL 4318kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)436303261103194984Rat
1354612Foco1Food consumption QTL 18.87eating behavior trait (VT:0001431)food intake rate (CMO:0000427)444463908148090542Rat
8552803Bw144Body weight QTL 14416body mass (VT:0001259)change in body weight to body weight ratio (CMO:0002216)42271068534430484Rat
8694374Bw155Body weight QTL 1553.390.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)41008408955084089Rat
2303168Bp330Blood pressure QTL 3304.250.017arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)45214602146446691Rat
8552801Bw143Body weight QTL 1437.3body mass (VT:0001259)change in body weight to body weight ratio (CMO:0002216)43443048482490359Rat
61412Pia2Pristane induced arthritis QTL 23.9joint integrity trait (VT:0010548)post-insult time to onset of experimental arthritis (CMO:0001450)42133334362278020Rat
2290374Gluco32Glucose level QTL 326.27blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)43717795044463908Rat
6478724Anxrr35Anxiety related response QTL 350.00449defecation behavior trait (VT:0010462)defecation measurement (CMO:0000997)41008408955084089Rat
61415Eae11Experimental allergic encephalomyelitis QTL 112.9nervous system integrity trait (VT:0010566)post-insult time to onset of experimental autoimmune encephalomyelitis (CMO:0001422)4139505420Rat
619616Bp79Blood pressure QTL 790.0292arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)4521460278882945Rat
1576305Emca6Estrogen-induced mammary cancer QTL 65.8mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)444463720155883716Rat
8552809Vie5Viral induced encephalitis QTL 525.3brain integrity trait (VT:0010579)encephalitis incidence/prevalence measurement (CMO:0002361)43443048482490359Rat
4889511Gluco61Glucose level QTL 614.70.001blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)43717795040869000Rat
738021Hcar13Hepatocarcinoma resistance QTL 134.3liver integrity trait (VT:0010547)liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)4132584199Rat
1358203Stl19Serum triglyceride level QTL 192.80.002blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)4521829465958103Rat
12798520Anxrr55Anxiety related response QTL 554.450.01locomotor behavior trait (VT:0001392)number of rearing movements with lid-pushing in an experimental apparatus (CMO:0002715)432583980114627242Rat


Additional Information

RGD Curation Notes
Note Type Note Reference
qtl_cross_type 11 female SBN/y were inter-crossed with 3 male CDs/y rats, F1 progeny were mated brother-to-sister to produce an F2 of 166 male animals. 11528530
qtl_general At 6-7 weeks, animals were put on custom-designed diabetogenic diet and were studied for 4 months. 11528530
qtl_map Peak LOD is at 26.5 +/-2 cM. 11528530