Stl4 QTL Report (Rattus norvegicus) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
QTL Registration

QTL: Stl4 (Serum triglyceride level QTL 4) Rattus norvegicus

Symbol: Stl4
Name: Serum triglyceride level QTL 4
RGD ID: 631646
Trait: blood triglyceride amount   (VT:0002644)    
Measurement Type: plasma triglyceride level   (CMO:0000548)    
LOD Score: 6.5
P Value: 1.0E-4
Variance: 17.9
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr8474,169,813 - 134,199,155RGD_MAPPER_PIPELINE
mRatBN7.2473,169,846 - 132,642,728RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.0473,786,419 - 132,455,556RGD_MAPPER_PIPELINERnor6.0
Rnor_5.04138,480,612 - 196,943,890RGDRnor5.0
RGSC_v3.4472,160,227 - 134,858,710RGDRGSC3.4
RGSC_v3.1472,436,134 - 135,103,551RGD
Cross Type: intercross
Strains Crossed: HTG BN/OrlIcoCrlf 
JBrowse: View Region in Genome Browser (JBrowse)
Model




  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Stl4Rathyperinsulinism  IDA 631174 RGD 
Stl4RatHypertriglyceridemia  IDA 631174 RGD 

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Stl4Ratincreased circulating insulin level  QTM 631174 RGD 
Stl4Ratincreased circulating triglyceride level  QTM 631174 RGD 

Clinical Measurement
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Stl4Ratplasma triglyceride level  IDA 631174 RGD 

Experimental Condition
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Stl4Ratfasting  IDA 631174 RGD 

Measurement Method
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Stl4Ratplasma triglyceride analysis  IDA 631174 RGD 

Rat Strain
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Stl4RatBN/OrlIcoCrlf  IEA 631174 RGD 
Stl4RatHTG  IEA 631174 RGD 

Vertebrate Trait
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Stl4Ratblood triglyceride amount  IDA 631174 RGD 


#
Reference Title
Reference Citation
1. Mapping of genetic loci predisposing to hypertriglyceridaemia in the hereditary hypertriglyceridaemic rat: analysis of genetic association with related traits of the insulin resistance syndrome. Klimes I, etal., Diabetologia 2003 Mar;46(3):352-8.


1 to 20 of 815 rows
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
1587194St13-ps9ST13, Hsp70 interacting protein, pseudogene 947393531073937677Rat
41128409LOC120102161uncharacterized LOC12010216147406270374072374Rat
1307076Cntnap2contactin associated protein 247410945576366434Rat
41075400Trnav-aac34transfer RNA valine (anticodon AAC) 3447472882274728894Rat
7558071LOC102549191uncharacterized LOC10254919147501451575018378Rat
9287263LOC103692120uncharacterized LOC10369212047521592875218753Rat
40926761LOC120102681small nucleolar RNA SNORA1747557598075576108Rat
7580004LOC102549132uncharacterized LOC10254913247591043575915630Rat
2322482Snrpb-ps2small nuclear ribonucleoprotein polypeptides B and B1, pseudogene 247649790576498598Rat
1308157Cul1cullin 147655195276625830Rat
1595860Ezh2enhancer of zeste 2 polycomb repressive complex 2 subunit47662439976687362Rat
619835Pdia4protein disulfide isomerase family A, member 447680319876822245Rat
2293500Zfp786zinc finger protein 78647682238376840943Rat
1562129Zfp398zinc finger protein 39847684967276881075Rat
1306278Zfp282zinc finger protein 28247688499676910250Rat
1307836Zfp212Zinc finger protein 21247692363876936076Rat
1304879Zfp956zinc finger protein 95647694323976967238Rat
9367833LOC103692140ATP synthase subunit delta, mitochondrial pseudogene47694416876946742Rat
11410744Trnac-gca1transfer RNA cysteine (anticodon GCA) 147698021376980284Rat
1566056Zfp777zinc finger protein 77747701637777044008Rat

1 to 20 of 815 rows
1 to 20 of 1000 rows
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Expected Size
Chr
Start
Stop
Species
Match
33711D4Mit512147316984673169967Ratregion
60805D4Wox615047331865573318803Ratregion
5090069AU04953127247351343173513703Ratregion
40698D4Rat16324747370376673704013Ratregion
41336D4Rat16417947399816673998347Ratregion
5506865G4675326447412297874123242Ratregion
5029711AW52377116247415950774159669Ratregion
5057542BE09551119147417392074174111Ratregion
1628130D4Got27913547442962974429764Ratregion
1640364D5Got30511647447123974471355Ratregion
43813D4Got5616947450666574506834Ratregion
34230D4Mgh2413047472618274726312Ratregion
39790D4Rat21316747482575074825917Ratregion
5074594RH13810618347508653775086720Ratregion
5053513RH14269225047508669075086940Ratregion
43812D4Got5713647532473375324869Ratregion
5504056px-50f1017747536605075366227Ratregion
36741D4Rat3117247541108475411258Ratregion
34943D4Rat3012447558500475585128Ratregion
60445D4Got5524947559126175591515Ratregion
1 to 20 of 1000 rows

Flank 1: (D4Mit5)
Rat AssemblyChrPosition (strand)Source
GRCr8474,169,813 - 74,169,934 (+)Marker Load Pipeline
mRatBN7.2473,169,846 - 73,169,967 (+)MAPPER
Rnor_6.0473,786,419 - 73,786,539NCBI
Rnor_5.04138,480,612 - 138,480,732UniSTS
RGSC_v3.4472,160,227 - 72,160,348RGD
RGSC_v3.4472,160,228 - 72,160,348UniSTS
RGSC_v3.1472,436,134 - 72,436,513RGD
Celera468,089,472 - 68,089,592UniSTS
RH 2.0 Map4494.1RGD
Cytogenetic Map4 RGD
Flank 2: (D4Mit17)
Rat AssemblyChrPosition (strand)Source
GRCr84134,199,006 - 134,199,155 (+)Marker Load Pipeline
mRatBN7.24132,642,577 - 132,642,728 (+)MAPPER
Rnor_6.04132,455,408 - 132,455,556NCBI
Rnor_5.04196,943,742 - 196,943,890UniSTS
RGSC_v3.44134,858,561 - 134,858,710RGD
RGSC_v3.44134,858,562 - 134,858,710UniSTS
RGSC_v3.14135,103,402 - 135,103,551RGD
Celera4121,497,835 - 121,497,983UniSTS
Cytogenetic Map4 RGD


1 to 10 of 113 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1358352Srcrt3Stress Responsive Cort QTL 32.29blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)438465774146803430Rat
1549843Bw53Body weight QTL 530.0001body mass (VT:0001259)body weight gain (CMO:0000420)461697658103194791Rat
61445Strs3Sensitivity to stroke QTL 33cerebrum integrity trait (VT:0010549)post-insult time to onset of cerebrovascular lesion (CMO:0002343)44043338885433388Rat
6893678Bw108Body weight QTL 1082.60.006body mass (VT:0001259)body weight (CMO:0000012)44345797688457976Rat
10755501Bp390Blood pressure QTL 3902.5arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)426775591168368347Rat
1357342Bw40Body weight QTL 400.001body mass (VT:0001259)body weight (CMO:0000012)476647384117676292Rat
61451Ciaa4CIA Autoantibody QTL 43.1blood autoantibody amount (VT:0003725)calculated serum anti-rat type 2 collagen autoantibody titer (CMO:0001281)4126395976167139601Rat
631556Bp135Blood pressure QTL 1350.017arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)478881294117676292Rat
1358363Sradr3Stress Responsive Adrenal Weight QTL 36.19adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)457486946102486946Rat
1549827Scl46Serum cholesterol level QTL 463.5blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)4132396220177396220Rat

1 to 10 of 113 rows


Database
Acc Id
Source(s)
NCBI Gene Stl4

Note Type Note Reference
qtl_cross_type intercross  
qtl_general following a reciprical cross of hHTg and BN, F1 hybrids were further inter-crossed to generate F2 hybrid populations 631174