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Gene: Smyd1 (SET and MYND domain containing 1) Rattus norvegicus
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Symbol: Smyd1
Name: SET and MYND domain containing 1
Description: Predicted to have transcription corepressor activity. Predicted to be involved in several processes, including chromatin remodeling; positive regulation of cell differentiation; and skeletal muscle cell differentiation. Predicted to localize to the cytoplasm and nucleus. Orthologous to human SMYD1 (SET and MYND domain containing 1); PARTICIPATES IN histone modification pathway; INTERACTS WITH 6-propyl-2-thiouracil; bisphenol A; cefaloridine.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: histone-lysine N-methyltransferase SMYD1; LOC297333; SET and MYND domain-containing protein 1
Orthologs:
Homo sapiens (human) : SMYD1 (SET and MYND domain containing 1)  HGNC  Alliance
Mus musculus (house mouse) : Smyd1 (SET and MYND domain containing 1)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Smyd1 (SET and MYND domain containing 1)
Pan paniscus (bonobo/pygmy chimpanzee) : SMYD1 (SET and MYND domain containing 1)
Canis lupus familiaris (dog) : SMYD1 (SET and MYND domain containing 1)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Smyd1 (SET and MYND domain containing 1)
Sus scrofa (pig) : SMYD1 (SET and MYND domain containing 1)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.0499,071,122 - 99,125,143 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl499,074,535 - 99,125,111 (-)Ensembl
Rnor_5.04163,848,270 - 163,904,185 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44104,423,556 - 104,475,134 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.14104,664,623 - 104,728,216 (-)NCBI
Celera492,378,302 - 92,428,867 (-)NCBICelera
Cytogenetic Map4q31NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References - curated
References - uncurated

Genomics

Comparative Map Data
QTLs in Region (Rnor_6.0)
miRNA Target Status

Expression

RNA-SEQ Expression

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome
Promoters

Strain Variation

Strain Sequence Variants (Rnor 6.0)
Damaging Variants

Additional Information

External Database Links
Nomenclature History
 
More on Smyd1
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

RGD Object Information
RGD ID: 1305105
Created: 2005-01-12
Species: Rattus norvegicus
Last Modified: 2019-08-20
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.