Dysf (dysferlin) - Rat Genome Database

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Gene: Dysf (dysferlin) Rattus norvegicus
Analyze
Symbol: Dysf
Name: dysferlin
RGD ID: 1311023
Description: Predicted to enable calcium ion binding activity; calcium-dependent phospholipid binding activity; and tubulin binding activity. Predicted to be involved in several processes, including myeloid cell activation involved in immune response; negative regulation of phagocytosis; and plasma membrane organization. Predicted to act upstream of or within several processes, including negative regulation of macromolecule metabolic process; positive regulation of neutrophil chemotaxis; and regulation of calcium ion transport. Located in cytoplasm. Human ortholog(s) of this gene implicated in Miyoshi muscular dystrophy 1; autosomal recessive limb-girdle muscular dystrophy type 2B; distal muscular dystrophy with anterior tibial onset; and muscular dystrophy. Orthologous to human DYSF (dysferlin); INTERACTS WITH 1-naphthyl isothiocyanate; 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: LOC312492
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.24116,490,877 - 116,690,709 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl4116,490,616 - 116,690,709 (+)Ensembl
Rnor_6.04115,700,942 - 115,901,873 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4115,712,850 - 115,901,873 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04180,288,855 - 180,487,010 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44118,213,435 - 118,371,283 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.14118,457,915 - 118,629,177 (+)NCBI
Celera4105,495,200 - 105,681,284 (+)NCBICelera
Cytogenetic Map4q34NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

Additional References at PubMed
PMID:11959863   PMID:12736685   PMID:14506282   PMID:16319126   PMID:16371353   PMID:18276788   PMID:18325335   PMID:19056867   PMID:19286669   PMID:20082313   PMID:20405035   PMID:20595382  
PMID:20724702   PMID:22043020   PMID:23533145   PMID:24177035   PMID:24203699   PMID:24239457   PMID:24302765   PMID:24685690   PMID:24784578   PMID:26795240   PMID:32572487  


Genomics

Comparative Map Data
Dysf
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.24116,490,877 - 116,690,709 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl4116,490,616 - 116,690,709 (+)Ensembl
Rnor_6.04115,700,942 - 115,901,873 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4115,712,850 - 115,901,873 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04180,288,855 - 180,487,010 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44118,213,435 - 118,371,283 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.14118,457,915 - 118,629,177 (+)NCBI
Celera4105,495,200 - 105,681,284 (+)NCBICelera
Cytogenetic Map4q34NCBI
DYSF
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl271,453,561 - 71,686,763 (+)EnsemblGRCh38hg38GRCh38
GRCh38271,453,154 - 71,686,763 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh37271,680,691 - 71,913,893 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36271,534,268 - 71,767,401 (+)NCBINCBI36hg18NCBI36
Build 34271,592,414 - 71,825,547NCBI
Celera271,531,488 - 71,764,393 (+)NCBI
Cytogenetic Map2p13.2NCBI
HuRef271,417,813 - 71,651,420 (+)NCBIHuRef
CHM1_1271,610,103 - 71,843,209 (+)NCBICHM1_1
Dysf
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39683,985,344 - 84,188,042 (+)NCBIGRCm39mm39
GRCm39 Ensembl683,985,572 - 84,188,042 (+)Ensembl
GRCm38684,008,361 - 84,211,060 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl684,008,590 - 84,211,060 (+)EnsemblGRCm38mm10GRCm38
MGSCv37683,958,584 - 84,161,036 (+)NCBIGRCm37mm9NCBIm37
MGSCv36683,985,176 - 84,176,489 (+)NCBImm8
Celera685,991,070 - 86,190,755 (+)NCBICelera
Cytogenetic Map6C3NCBI
cM Map636.14NCBI
Dysf
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542413,756,130 - 13,970,436 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542413,756,130 - 13,970,437 (-)NCBIChiLan1.0ChiLan1.0
DYSF
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.12A72,994,889 - 73,228,846 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A72,994,888 - 73,228,846 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v02A71,495,573 - 71,730,073 (+)NCBIMhudiblu_PPA_v0panPan3
DYSF
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11751,011,197 - 51,228,969 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1751,011,197 - 51,228,876 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1750,660,840 - 50,877,038 (-)NCBI
ROS_Cfam_1.01751,883,528 - 52,100,122 (-)NCBI
UMICH_Zoey_3.11750,890,621 - 51,106,714 (-)NCBI
UNSW_CanFamBas_1.01750,956,991 - 51,173,487 (-)NCBI
UU_Cfam_GSD_1.01751,531,225 - 51,747,532 (-)NCBI
Dysf
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629212,952,773 - 13,158,562 (-)NCBI
SpeTri2.0NW_00493649115,412,606 - 15,618,519 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
DYSF
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl371,020,141 - 71,246,967 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1371,020,143 - 71,237,658 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2374,464,909 - 74,674,775 (-)NCBISscrofa10.2Sscrofa10.2susScr3
DYSF
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11435,488,393 - 35,715,222 (-)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl1435,488,391 - 35,651,395 (-)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604576,314,814 - 76,551,407 (+)NCBIVero_WHO_p1.0
Dysf
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247621,936,775 - 2,166,817 (-)NCBIHetGla_female_1.0hetGla2

Position Markers
D4Rat78  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.24116,553,490 - 116,553,633 (+)MAPPERmRatBN7.2
Rnor_6.04115,764,185 - 115,764,327NCBIRnor6.0
Rnor_5.04180,349,836 - 180,349,978UniSTSRnor5.0
RGSC_v3.44118,231,620 - 118,231,764RGDRGSC3.4
RGSC_v3.44118,231,622 - 118,231,764UniSTSRGSC3.4
RGSC_v3.14118,476,101 - 118,476,245RGD
Celera4105,545,921 - 105,546,078UniSTS
RH 3.4 Map4681.1UniSTS
RH 3.4 Map4681.1RGD
FHH x ACI Map466.84UniSTS
FHH x ACI Map466.84RGD
Cytogenetic Map4q34UniSTS
D4Rat179  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.24116,601,436 - 116,601,590 (+)MAPPERmRatBN7.2
Rnor_6.04115,813,010 - 115,813,163NCBIRnor6.0
Rnor_5.04180,398,196 - 180,398,349UniSTSRnor5.0
RGSC_v3.44118,281,190 - 118,281,344RGDRGSC3.4
RGSC_v3.44118,281,191 - 118,281,344UniSTSRGSC3.4
RGSC_v3.14118,525,672 - 118,525,825RGD
Celera4105,594,270 - 105,594,421UniSTS
RH 3.4 Map4679.4UniSTS
RH 3.4 Map4679.4RGD
SHRSP x BN Map450.99UniSTS
SHRSP x BN Map450.99RGD
Cytogenetic Map4q34UniSTS
BQ211105  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.24116,684,937 - 116,685,140 (+)MAPPERmRatBN7.2
Rnor_6.04115,896,101 - 115,896,303NCBIRnor6.0
Rnor_5.04180,481,312 - 180,481,514UniSTSRnor5.0
RGSC_v3.44118,365,567 - 118,365,769UniSTSRGSC3.4
Celera4105,675,574 - 105,675,776UniSTS
RH 3.4 Map4682.3UniSTS
Cytogenetic Map4q34UniSTS
ha2177  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.26134,815,004 - 134,816,036 (+)MAPPERmRatBN7.2
Rnor_6.06141,486,520 - 141,487,551NCBIRnor6.0
Rnor_6.02155,277,708 - 155,279,406NCBIRnor6.0
Rnor_5.02174,672,126 - 174,673,824UniSTSRnor5.0
Rnor_5.06150,444,300 - 150,445,331UniSTSRnor5.0
RGSC_v3.46141,113,291 - 141,114,322UniSTSRGSC3.4
RGSC_v3.44118,240,312 - 118,241,709UniSTSRGSC3.4
Celera6132,501,565 - 132,502,596UniSTS
Cytogenetic Map2q31UniSTS
Cytogenetic Map4q34UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2303168Bp330Blood pressure QTL 3304.250.017arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)45214602146446691Rat
2316958Gluco58Glucose level QTL 5810blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)411320076180699135Rat
1358352Srcrt3Stress Responsive Cort QTL 32.29blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)438465774146803430Rat
1576305Emca6Estrogen-induced mammary cancer QTL 65.8mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)444463720155883716Rat
1354612Foco1Food consumption QTL 18.87eating behavior trait (VT:0001431)food intake rate (CMO:0000427)444463908148090542Rat
1354660Salc1Saline consumption QTL 111.26drinking behavior trait (VT:0001422)saline drink intake rate (CMO:0001627)444463908148090542Rat
2312567Glom19Glomerulus QTL 191.90.006kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)445456990146803430Rat
1298082Stresp4Stress response QTL 4blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)450119848146803430Rat
70200Alc18Alcohol consumption QTL 189.2drinking behavior trait (VT:0001422)ethanol intake volume to total fluid intake volume ratio (CMO:0001591)456647873149491524Rat
1641833Alc21Alcohol consumption QTL 218.60.0001drinking behavior trait (VT:0001422)ethanol drink intake rate (CMO:0001407)456698790126192555Rat
738009Sach4Saccharine consumption QTL 44.90.000016consumption behavior trait (VT:0002069)saccharin intake volume to total fluid intake volume ratio (CMO:0001601)459948935154902892Rat
738016Alc16Alcohol consumption QTL 163.60.00015consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)459948935154902892Rat
738031Alc14Alcohol consumption QTL 147.60.00003consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)459948935154902892Rat
61418Pia5Pristane induced arthritis QTL 54.5joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)462277855128289560Rat
631674Iddm14Insulin dependent diabetes mellitus QTL 14blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)464528739157573521Rat
61330Eau1Experimental allergic uveoretinitis QTL 10.0003uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)470362013132642728Rat
631646Stl4Serum triglyceride level QTL 46.50.0001blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)473169846132642728Rat
724522Bp146Blood pressure QTL 1462.20.0021arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)473630210118630210Rat
2302051Pia28Pristane induced arthritis QTL 285.30.001blood autoantibody amount (VT:0003725)serum immunoglobulin G-type rheumatoid factor level relative to an arbitrary reference serum (CMO:0002112)473630210118630210Rat
70167Bw22Body weight QTL 223.1body mass (VT:0001259)body weight (CMO:0000012)476647384117676292Rat
1357342Bw40Body weight QTL 400.001body mass (VT:0001259)body weight (CMO:0000012)476647384117676292Rat
631662Hcar2Hepatocarcinoma resistance QTL 23.10.0003liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)478878504123878504Rat
631556Bp135Blood pressure QTL 1350.017arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)478881294117676292Rat
738015Pia9Pristane induced arthritis QTL 94.50.048joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)480694870125694870Rat
2306899Bp338Blood pressure QTL 3380.071arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)481006124120102625Rat
1641919Alc22Alcohol consumption QTL 220.0005drinking behavior trait (VT:0001422)ethanol drink intake rate (CMO:0001407)481192555126192555Rat
70177Xhs1X-ray hypersensitivity QTL 125.1intestine integrity trait (VT:0010554)post-insult time to onset of moribundity (CMO:0001896)482798864152731274Rat
1576316Ept5Estrogen-induced pituitary tumorigenesis QTL 53.8pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)483428419177635233Rat
634334Xhs3X-ray hypersensitivity QTL 310intestine integrity trait (VT:0010554)post-insult time to onset of moribundity (CMO:0001896)484728680129854654Rat
1582232Gluco25Glucose level QTL 253.60.0023blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)485253748148090731Rat
12798523Anxrr56Anxiety related response QTL 562.830.05locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)485253748150276390Rat
1358202Gluco11Glucose level QTL 112.40.02adipocyte glucose uptake trait (VT:0004185)absolute change in adipocyte glucose uptake (CMO:0000873)485379421167139601Rat
61476Aia3Adjuvant induced arthritis QTL 33.9joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)486730991131730991Rat
1578662Bss15Bone structure and strength QTL 1519.6femur width (VT:1000666)femoral neck width (CMO:0001695)487327165132327165Rat
1578670Bss14Bone structure and strength QTL 1416.4femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)487327165132327165Rat
1578655Bmd11Bone mineral density QTL 1111femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)490850165135850165Rat
634335Anxrr16Anxiety related response QTL 167.22locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)493308457167139447Rat
631689Scl4Serum cholesterol level QTL 41.90.008blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)495174120140174120Rat
61434Cia3Collagen induced arthritis QTL 34.8joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4103194656148194656Rat
2302049Pia32Pristane induced arthritis QTL 325.10.001blood autoantibody amount (VT:0003725)serum immunoglobulin G-type rheumatoid factor level relative to an arbitrary reference serum (CMO:0002112)4105789505150789505Rat
731165Uae21Urinary albumin excretion QTL 212.40.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)4106649412151649412Rat
61406Scwia1Streptococcal cell wall induced arthritis QTL 12.3joint integrity trait (VT:0010548)experimental arthritis severity measurement (CMO:0001459)4106805662151805662Rat
7207480Bss105Bone structure and strength QTL 1058.1femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)4109827074154827074Rat
1549832Bss3Bone structure and strength QTL 311femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)4109827074154827074Rat
737821Hcar9Hepatocarcinoma resistance QTL 93.7liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)4109866907167139601Rat
1331759Hrtrt13Heart rate QTL 133.54628heart pumping trait (VT:2000009)heart rate (CMO:0000002)4110275411168266883Rat
6478760Anxrr45Anxiety related response QTL 450.06717locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4110870972155870972Rat
6478763Anxrr46Anxiety related response QTL 460.07428locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4110870972155870972Rat
12798519Anxrr54Anxiety related response QTL 542.540.05locomotor behavior trait (VT:0001392)distance moved per unit of time into, out of or within a discrete space in an experimental apparatus (CMO:0001493)4114627026159627026Rat
1300116Hrtrt5Heart rate QTL 53.76heart pumping trait (VT:2000009)heart rate (CMO:0000002)4116179486151161268Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:54
Count of miRNA genes:45
Interacting mature miRNAs:50
Transcripts:ENSRNOT00000064536
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 43 10 2 6 2 8 11 31 31 11 8
Low 3 47 39 13 39 74 4 10
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001107869 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006236758 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006236760 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006236761 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006236764 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006236765 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006236766 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006236767 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006236768 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006236769 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006236770 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006236771 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006236772 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006236773 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006236774 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006236775 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008763068 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017592629 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017592630 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017592631 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017592632 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017592633 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017592634 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017592635 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005503215 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide CH473957 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JACYVU010000148 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000064536   ⟹   ENSRNOP00000061606
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl4116,502,584 - 116,690,709 (+)Ensembl
Rnor_6.0 Ensembl4115,713,004 - 115,901,873 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000085765   ⟹   ENSRNOP00000074138
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl4116,502,432 - 116,690,686 (+)Ensembl
Rnor_6.0 Ensembl4115,712,850 - 115,901,868 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000106282   ⟹   ENSRNOP00000097863
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl4116,490,616 - 116,690,686 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000108867   ⟹   ENSRNOP00000078213
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl4116,502,432 - 116,686,936 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000113535   ⟹   ENSRNOP00000077445
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl4116,490,616 - 116,690,686 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000115270   ⟹   ENSRNOP00000082754
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl4116,490,616 - 116,690,686 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000117268   ⟹   ENSRNOP00000087285
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl4116,490,616 - 116,690,686 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000120244   ⟹   ENSRNOP00000078253
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl4116,490,616 - 116,690,686 (+)Ensembl
RefSeq Acc Id: NM_001107869   ⟹   NP_001101339
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.24116,502,584 - 116,690,709 (+)NCBI
Rnor_6.04115,713,004 - 115,901,873 (+)NCBI
Rnor_5.04180,288,855 - 180,487,010 (+)NCBI
RGSC_v3.44118,213,435 - 118,371,283 (+)RGD
Celera4105,495,200 - 105,681,284 (+)RGD
Sequence:
RefSeq Acc Id: XM_006236758   ⟹   XP_006236820
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.24116,502,421 - 116,690,705 (+)NCBI
Rnor_6.04115,712,303 - 115,901,869 (+)NCBI
Rnor_5.04180,288,855 - 180,487,010 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006236760   ⟹   XP_006236822
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.24116,502,584 - 116,690,705 (+)NCBI
Rnor_6.04115,712,303 - 115,901,869 (+)NCBI
Rnor_5.04180,288,855 - 180,487,010 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006236761   ⟹   XP_006236823
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.24116,490,924 - 116,690,705 (+)NCBI
Rnor_6.04115,700,950 - 115,901,869 (+)NCBI
Rnor_5.04180,288,855 - 180,487,010 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006236764   ⟹   XP_006236826
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.24116,502,584 - 116,690,705 (+)NCBI
Rnor_6.04115,712,303 - 115,901,869 (+)NCBI
Rnor_5.04180,288,855 - 180,487,010 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006236765   ⟹   XP_006236827
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.24116,490,924 - 116,690,705 (+)NCBI
Rnor_6.04115,700,951 - 115,901,869 (+)NCBI
Rnor_5.04180,288,855 - 180,487,010 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006236766   ⟹   XP_006236828
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.24116,502,584 - 116,690,705 (+)NCBI
Rnor_6.04115,712,303 - 115,901,869 (+)NCBI
Rnor_5.04180,288,855 - 180,487,010 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006236767   ⟹   XP_006236829
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.24116,490,924 - 116,690,705 (+)NCBI
Rnor_6.04115,700,951 - 115,901,869 (+)NCBI
Rnor_5.04180,288,855 - 180,487,010 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006236768   ⟹   XP_006236830
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.24116,502,584 - 116,690,705 (+)NCBI
Rnor_6.04115,712,303 - 115,901,869 (+)NCBI
Rnor_5.04180,288,855 - 180,487,010 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006236769   ⟹   XP_006236831
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.24116,490,924 - 116,690,705 (+)NCBI
Rnor_6.04115,700,952 - 115,901,869 (+)NCBI
Rnor_5.04180,288,855 - 180,487,010 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006236770   ⟹   XP_006236832
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.24116,502,584 - 116,690,705 (+)NCBI
Rnor_6.04115,712,303 - 115,901,869 (+)NCBI
Rnor_5.04180,288,855 - 180,487,010 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006236771   ⟹   XP_006236833
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.24116,490,924 - 116,690,705 (+)NCBI
Rnor_6.04115,700,952 - 115,901,869 (+)NCBI
Rnor_5.04180,288,855 - 180,487,010 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006236772   ⟹   XP_006236834
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.24116,502,584 - 116,690,689 (+)NCBI
Rnor_6.04115,712,303 - 115,901,869 (+)NCBI
Rnor_5.04180,288,855 - 180,487,010 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006236773   ⟹   XP_006236835
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.24116,490,924 - 116,690,689 (+)NCBI
Rnor_6.04115,700,952 - 115,901,869 (+)NCBI
Rnor_5.04180,288,855 - 180,487,010 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006236774   ⟹   XP_006236836
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.24116,502,584 - 116,690,705 (+)NCBI
Rnor_6.04115,712,303 - 115,901,869 (+)NCBI
Rnor_5.04180,288,855 - 180,487,010 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006236775   ⟹   XP_006236837
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.24116,490,924 - 116,690,705 (+)NCBI
Rnor_6.04115,700,954 - 115,901,869 (+)NCBI
Rnor_5.04180,288,855 - 180,487,010 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017592629   ⟹   XP_017448118
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.24116,502,421 - 116,690,705 (+)NCBI
Rnor_6.04115,712,302 - 115,901,869 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017592630   ⟹   XP_017448119
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.24116,490,877 - 116,690,705 (+)NCBI
Rnor_6.04115,700,942 - 115,901,869 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017592631   ⟹   XP_017448120
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.24116,502,421 - 116,690,705 (+)NCBI
Rnor_6.04115,712,302 - 115,901,869 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017592632   ⟹   XP_017448121
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.24116,502,421 - 116,690,705 (+)NCBI
Rnor_6.04115,712,302 - 115,901,869 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017592633   ⟹   XP_017448122
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.24116,502,421 - 116,690,705 (+)NCBI
Rnor_6.04115,712,302 - 115,901,869 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017592634   ⟹   XP_017448123
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.24116,490,924 - 116,690,705 (+)NCBI
Rnor_6.04115,700,946 - 115,901,869 (+)NCBI
Sequence:
RefSeq Acc Id: XR_005503215
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.24116,502,419 - 116,685,555 (+)NCBI
Reference Sequences
RefSeq Acc Id: NP_001101339   ⟸   NM_001107869
- UniProtKB: D4A6X1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006236827   ⟸   XM_006236765
- Peptide Label: isoform X11
- Sequence:
RefSeq Acc Id: XP_006236823   ⟸   XM_006236761
- Peptide Label: isoform X7
- Sequence:
RefSeq Acc Id: XP_006236831   ⟸   XM_006236769
- Peptide Label: isoform X15
- Sequence:
RefSeq Acc Id: XP_006236829   ⟸   XM_006236767
- Peptide Label: isoform X13
- Sequence:
RefSeq Acc Id: XP_006236835   ⟸   XM_006236773
- Peptide Label: isoform X19
- Sequence:
RefSeq Acc Id: XP_006236833   ⟸   XM_006236771
- Peptide Label: isoform X17
- Sequence:
RefSeq Acc Id: XP_006236837   ⟸   XM_006236775
- Peptide Label: isoform X21
- Sequence:
RefSeq Acc Id: XP_006236820   ⟸   XM_006236758
- Peptide Label: isoform X4
- UniProtKB: A0A0G2K7B6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006236826   ⟸   XM_006236764
- Peptide Label: isoform X10
- Sequence:
RefSeq Acc Id: XP_006236822   ⟸   XM_006236760
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: XP_006236830   ⟸   XM_006236768
- Peptide Label: isoform X14
- Sequence:
RefSeq Acc Id: XP_006236828   ⟸   XM_006236766
- Peptide Label: isoform X12
- Sequence:
RefSeq Acc Id: XP_006236834   ⟸   XM_006236772
- Peptide Label: isoform X18
- Sequence:
RefSeq Acc Id: XP_006236832   ⟸   XM_006236770
- Peptide Label: isoform X16
- Sequence:
RefSeq Acc Id: XP_006236836   ⟸   XM_006236774
- Peptide Label: isoform X20
- Sequence:
RefSeq Acc Id: XP_017448119   ⟸   XM_017592630
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_017448123   ⟸   XM_017592634
- Peptide Label: isoform X9
- Sequence:
RefSeq Acc Id: XP_017448118   ⟸   XM_017592629
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_017448121   ⟸   XM_017592632
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_017448120   ⟸   XM_017592631
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_017448122   ⟸   XM_017592633
- Peptide Label: isoform X8
- Sequence:
RefSeq Acc Id: ENSRNOP00000074138   ⟸   ENSRNOT00000085765
RefSeq Acc Id: ENSRNOP00000061606   ⟸   ENSRNOT00000064536
RefSeq Acc Id: ENSRNOP00000077445   ⟸   ENSRNOT00000113535
RefSeq Acc Id: ENSRNOP00000078253   ⟸   ENSRNOT00000120244
RefSeq Acc Id: ENSRNOP00000097863   ⟸   ENSRNOT00000106282
RefSeq Acc Id: ENSRNOP00000082754   ⟸   ENSRNOT00000115270
RefSeq Acc Id: ENSRNOP00000078213   ⟸   ENSRNOT00000108867
RefSeq Acc Id: ENSRNOP00000087285   ⟸   ENSRNOT00000117268
Protein Domains
C2

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13693196
Promoter ID:EPDNEW_R3715
Type:multiple initiation site
Name:Dysf_1
Description:dysferlin
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.04115,712,862 - 115,712,922EPDNEW

Strain Variation

Strain Sequence Variants (Rnor 6.0)
ACI/EurMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/EurMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
ACI/EurMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
ACI/N (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
BBDP/Wor (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
BN-Lx/CubMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
BUF/N (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH2/CubMcwi (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH3/CubMcwi (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
Buf/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
COP/CrCrl (MCW & UW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
University of Wisconsin (Dr. James Shull)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Charles River Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)
DA/OlaHsd (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/DuCrl (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/N (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
F344/NRrrc (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
F344/Stm (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHH/EurMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
FHL/EurMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHL/EurMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
FXLE16/Stm (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE18/Stm (2020)
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Sequenced By: MCW