Slc41a3 (solute carrier family 41, member 3) - Rat Genome Database

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Gene: Slc41a3 (solute carrier family 41, member 3) Rattus norvegicus
Analyze
Symbol: Slc41a3
Name: solute carrier family 41, member 3
RGD ID: 1589573
Description: Predicted to enable magnesium:sodium antiporter activity. Predicted to be involved in mitochondrial magnesium ion transmembrane transport. Predicted to be located in mitochondrial inner membrane. Predicted to be active in plasma membrane. Orthologous to human SLC41A3 (solute carrier family 41 member 3); INTERACTS WITH 1-naphthyl isothiocyanate; 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: solute carrier family 41 member 3
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84124,666,789 - 124,711,968 (+)NCBIGRCr8
GRCr8 Ensembl4124,666,808 - 124,711,967 (+)EnsemblGRCr8 Ensembl
mRatBN7.24123,109,555 - 123,154,766 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4123,112,748 - 123,154,766 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx4128,595,397 - 128,622,433 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04124,369,815 - 124,396,849 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04122,994,391 - 123,021,427 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.04123,467,552 - 123,513,447 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4123,467,549 - 123,510,217 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04187,034,230 - 187,078,591 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera4112,051,998 - 112,078,495 (+)NCBICelera
Cytogenetic Map4q34NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. GOA pipeline RGD automated data pipeline
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932  


Genomics

Comparative Map Data
Slc41a3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84124,666,789 - 124,711,968 (+)NCBIGRCr8
GRCr8 Ensembl4124,666,808 - 124,711,967 (+)EnsemblGRCr8 Ensembl
mRatBN7.24123,109,555 - 123,154,766 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4123,112,748 - 123,154,766 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx4128,595,397 - 128,622,433 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04124,369,815 - 124,396,849 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04122,994,391 - 123,021,427 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.04123,467,552 - 123,513,447 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4123,467,549 - 123,510,217 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04187,034,230 - 187,078,591 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera4112,051,998 - 112,078,495 (+)NCBICelera
Cytogenetic Map4q34NCBI
SLC41A3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383126,006,357 - 126,101,520 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3126,006,357 - 126,101,561 (-)EnsemblGRCh38hg38GRCh38
GRCh373125,725,200 - 125,820,363 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 363127,207,890 - 127,285,824 (-)NCBINCBI36Build 36hg18NCBI36
Build 343127,207,897 - 127,285,832NCBI
Celera3124,148,794 - 124,244,070 (-)NCBICelera
Cytogenetic Map3q21.2-q21.3NCBI
HuRef3123,105,704 - 123,200,963 (-)NCBIHuRef
CHM1_13125,687,978 - 125,783,164 (-)NCBICHM1_1
T2T-CHM13v2.03128,738,761 - 128,834,029 (-)NCBIT2T-CHM13v2.0
Slc41a3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39690,579,043 - 90,623,394 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl690,581,707 - 90,623,394 (+)EnsemblGRCm39 Ensembl
GRCm38690,604,730 - 90,646,412 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl690,604,725 - 90,646,412 (+)EnsemblGRCm38mm10GRCm38
MGSCv37690,554,874 - 90,596,406 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36690,570,384 - 90,611,916 (+)NCBIMGSCv36mm8
Celera692,488,674 - 92,530,325 (+)NCBICelera
Cytogenetic Map6D1NCBI
cM Map640.16NCBI
Slc41a3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542121,349,484 - 21,407,171 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542121,349,484 - 21,407,171 (-)NCBIChiLan1.0ChiLan1.0
SLC41A3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22123,950,308 - 124,028,032 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan13123,955,089 - 124,032,732 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v03123,069,790 - 123,147,408 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13130,388,082 - 130,465,689 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3130,388,082 - 130,465,689 (-)Ensemblpanpan1.1panPan2
SLC41A3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.120120,589 - 211,554 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl20115,011 - 211,075 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha20206,778 - 297,424 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.020179,929 - 270,742 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl20179,933 - 276,163 (-)EnsemblROS_Cfam_1.0 Ensembl
UNSW_CanFamBas_1.020242,088 - 332,824 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.020201,442 - 292,199 (-)NCBIUU_Cfam_GSD_1.0
Slc41a3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494219,236,253 - 19,257,034 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936898433,932 - 454,752 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936898433,977 - 454,746 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC41A3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl753,672,130 - 53,748,727 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1753,672,131 - 53,741,033 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2758,703,341 - 58,726,780 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SLC41A3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12254,950,899 - 55,030,060 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2254,966,562 - 55,031,564 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666041111,281,875 - 111,359,480 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Slc41a3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624773480,471 - 534,378 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624773480,486 - 534,985 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Slc41a3
146 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:82
Count of miRNA genes:57
Interacting mature miRNAs:73
Transcripts:ENSRNOT00000073268
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1582232Gluco25Glucose level QTL 253.60.0023blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)486583980149763391Rat
631689Scl4Serum cholesterol level QTL 41.90.008blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)496731383141731383Rat
1578655Bmd11Bone mineral density QTL 1111femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)492406430137406430Rat
1300116Hrtrt5Heart rate QTL 53.76heart pumping trait (VT:2000009)heart rate (CMO:0000002)4117737142152833657Rat
10755501Bp390Blood pressure QTL 3902.5arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)427730518170099664Rat
61451Ciaa4CIA Autoantibody QTL 43.1blood autoantibody amount (VT:0003725)calculated serum anti-rat type 2 collagen autoantibody titer (CMO:0001281)4123870974168870974Rat
61330Eau1Experimental allergic uveoretinitis QTL 10.0003uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)426234499134199155Rat
737821Hcar9Hepatocarcinoma resistance QTL 93.7liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)4106848959168870974Rat
731165Uae21Urinary albumin excretion QTL 212.40.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)4108206096153206096Rat
1549832Bss3Bone structure and strength QTL 311femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)4111383604156383604Rat
70177Xhs1X-ray hypersensitivity QTL 125.1intestine integrity trait (VT:0010554)post-insult time to onset of moribundity (CMO:0001896)482944895154403548Rat
6909128Pancm4Pancreatic morphology QTL 411.35pancreas mass (VT:0010144)pancreas wet weight (CMO:0000626)427862204126119996Rat
61476Aia3Adjuvant induced arthritis QTL 33.9joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)475939858140508796Rat
1641919Alc22Alcohol consumption QTL 220.0005drinking behavior trait (VT:0001422)ethanol drink intake rate (CMO:0001407)465060960127749483Rat
1354660Salc1Saline consumption QTL 111.26drinking behavior trait (VT:0001422)saline drink intake rate (CMO:0001627)445429897149763204Rat
737978Pia23Pristane induced arthritis QTL 235.3joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4123870974168870974Rat
1578670Bss14Bone structure and strength QTL 1416.4femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)488883695133883695Rat
70201Gcr1Gastric cancer resistance QTL 12.7stomach morphology trait (VT:0000470)stomach tumor susceptibility score (CMO:0002043)4103834277148834277Rat
70200Alc18Alcohol consumption QTL 189.2drinking behavior trait (VT:0001422)ethanol intake volume to total fluid intake volume ratio (CMO:0001591)457613339151163960Rat
2316958Gluco58Glucose level QTL 5810blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)412212457182430611Rat
1578662Bss15Bone structure and strength QTL 1519.6femur width (VT:1000666)femoral neck width (CMO:0001695)488883695133883695Rat
2302049Pia32Pristane induced arthritis QTL 325.10.001blood autoantibody amount (VT:0003725)serum immunoglobulin G-type rheumatoid factor level relative to an arbitrary reference serum (CMO:0002112)4107346299152346299Rat
6478763Anxrr46Anxiety related response QTL 460.07428locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4112427331157427331Rat
6478760Anxrr45Anxiety related response QTL 450.06717locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4112427331157427331Rat
1331802Srn5Serum renin concentration QTL 53.045renin activity (VT:0005581)plasma renin activity level (CMO:0000116)4117559384162559384Rat
738009Sach4Saccharine consumption QTL 44.90.000016consumption behavior trait (VT:0002069)saccharin intake volume to total fluid intake volume ratio (CMO:0001601)460916264184426481Rat
7207480Bss105Bone structure and strength QTL 1058.1femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)4111383604156383604Rat
634335Anxrr16Anxiety related response QTL 167.22locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)494638356168870820Rat
631646Stl4Serum triglyceride level QTL 46.50.0001blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)474169813134199155Rat
634334Xhs3X-ray hypersensitivity QTL 310intestine integrity trait (VT:0010554)post-insult time to onset of moribundity (CMO:0001896)486058928131411333Rat
61406Scwia1Streptococcal cell wall induced arthritis QTL 12.3joint integrity trait (VT:0010548)experimental arthritis severity measurement (CMO:0001459)475939858140508796Rat
631511Pia7Pristane induced arthritis QTL 74.3joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4123870974168870974Rat
1354612Foco1Food consumption QTL 18.87eating behavior trait (VT:0001431)food intake rate (CMO:0000427)445429897149763204Rat
634347Hcar8Hepatocarcinoma resistance QTL 85.8liver integrity trait (VT:0010547)liver tumorous lesion area to total liver area ratio (CMO:0001075)4124700988169700988Rat
2303168Bp330Blood pressure QTL 3304.250.017arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)45889999148002343Rat
738031Alc14Alcohol consumption QTL 147.60.00003consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)460916264174095838Rat
1576316Ept5Estrogen-induced pituitary tumorigenesis QTL 53.8pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)4100752691179366077Rat
631662Hcar2Hepatocarcinoma resistance QTL 23.10.0003liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)484349032129349032Rat
1576305Emca6Estrogen-induced mammary cancer QTL 65.8mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)445429709157555683Rat
61418Pia5Pristane induced arthritis QTL 54.5joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)463245026129846354Rat
738016Alc16Alcohol consumption QTL 163.60.00015consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)460916264184426481Rat
1358202Gluco11Glucose level QTL 112.40.02adipocyte glucose uptake trait (VT:0004185)absolute change in adipocyte glucose uptake (CMO:0000873)486709649168870974Rat
1641833Alc21Alcohol consumption QTL 218.60.0001drinking behavior trait (VT:0001422)ethanol drink intake rate (CMO:0001407)457664252127749483Rat
2306899Bp338Blood pressure QTL 3380.071arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)482336765127336765Rat
631674Iddm14Insulin dependent diabetes mellitus QTL 14blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)465495851159259805Rat
2293840Kiddil9Kidney dilation QTL 92.9kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)4113634167149763391Rat
12798519Anxrr54Anxiety related response QTL 542.540.05locomotor behavior trait (VT:0001392)distance moved per unit of time into, out of or within a discrete space in an experimental apparatus (CMO:0001493)4116184844161184844Rat
12798523Anxrr56Anxiety related response QTL 562.830.05locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)486583980131583980Rat
12798527Anxrr58Anxiety related response QTL 584.110.05locomotor behavior trait (VT:0001392)distance moved per unit of time into, out of or within a discrete space in an experimental apparatus (CMO:0001493)4121020385148834277Rat

Markers in Region
D4Rat48  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr84124,700,988 - 124,701,200 (+)Marker Load Pipeline
mRatBN7.24123,143,783 - 123,143,996 (-)MAPPERmRatBN7.2
Rnor_6.04123,478,354 - 123,478,566NCBIRnor6.0
Rnor_5.04187,067,577 - 187,067,789UniSTSRnor5.0
Celera4112,067,513 - 112,067,725UniSTS
RH 3.4 Map4733.62RGD
RH 3.4 Map4733.62UniSTS
RH 2.0 Map4792.2RGD
SHRSP x BN Map454.33RGD
D4Got82  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.24123,154,343 - 123,154,460 (-)MAPPERmRatBN7.2
Rnor_6.04123,467,858 - 123,467,974NCBIRnor6.0
Rnor_5.04187,078,169 - 187,078,285UniSTSRnor5.0
Celera4112,078,071 - 112,078,189UniSTS
RH 3.4 Map4733.53RGD
RH 3.4 Map4733.53UniSTS
RH 2.0 Map4783.8RGD
AU048745  
Rat AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map5q32UniSTS
Cytogenetic Map13q24UniSTS
Cytogenetic Map6q32UniSTS
Cytogenetic Map17p12UniSTS
Cytogenetic Map16p14UniSTS
Cytogenetic Map13q26UniSTS
Cytogenetic Map10q22UniSTS
Cytogenetic Map7q11UniSTS
Cytogenetic Map8q24UniSTS
Cytogenetic Map5q21UniSTS
Cytogenetic Map4q24UniSTS
Cytogenetic Map2q11UniSTS
Cytogenetic Map1q54UniSTS
Cytogenetic Map1q36UniSTS
Cytogenetic Map18p11UniSTS
Cytogenetic Map13q13UniSTS
Cytogenetic Map10q24UniSTS
Cytogenetic Map8q31UniSTS
Cytogenetic Map3q21UniSTS
Cytogenetic Map13p13UniSTS
Cytogenetic Map1q21UniSTS
Cytogenetic Map11q23UniSTS
Cytogenetic Map10q31UniSTS
Cytogenetic Map16q12.2UniSTS
Cytogenetic Map3q24UniSTS
Cytogenetic Map5q36UniSTS
Cytogenetic Map3p13UniSTS
RH133572  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.24123,154,544 - 123,154,732 (-)MAPPERmRatBN7.2
Rnor_6.04123,467,586 - 123,467,773NCBIRnor6.0
Rnor_5.04187,078,370 - 187,078,557UniSTSRnor5.0
Celera4112,078,274 - 112,078,461UniSTS
RH 3.4 Map4734.01UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
9 11 49 113 91 90 59 25 59 6 218 97 11 93 45 60 31 17 17

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001037492 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006236871 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006236872 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006236873 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006236874 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006236875 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006236877 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006236878 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039108305 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039108306 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039108307 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063286655 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063286656 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide BC104698 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473957 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000004 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000073268   ⟹   ENSRNOP00000065688
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl4124,684,210 - 124,711,966 (+)Ensembl
mRatBN7.2 Ensembl4123,127,763 - 123,154,765 (+)Ensembl
Rnor_6.0 Ensembl4123,467,553 - 123,494,742 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000080734   ⟹   ENSRNOP00000071826
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl4124,666,808 - 124,711,967 (+)Ensembl
mRatBN7.2 Ensembl4123,112,748 - 123,154,766 (+)Ensembl
Rnor_6.0 Ensembl4123,467,549 - 123,510,217 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000120080   ⟹   ENSRNOP00000087291
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl4124,668,810 - 124,711,967 (+)Ensembl
mRatBN7.2 Ensembl4123,119,769 - 123,154,766 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000146243   ⟹   ENSRNOP00000108387
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl4124,684,210 - 124,711,966 (+)Ensembl
RefSeq Acc Id: NM_001037492   ⟹   NP_001032569
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84124,684,967 - 124,711,968 (+)NCBI
mRatBN7.24123,127,763 - 123,154,766 (+)NCBI
Rnor_6.04123,467,552 - 123,494,742 (-)NCBI
Rnor_5.04187,034,230 - 187,078,591 (+)NCBI
Celera4112,051,998 - 112,078,495 (+)RGD
Sequence:
RefSeq Acc Id: XM_006236871   ⟹   XP_006236933
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84124,669,639 - 124,711,968 (+)NCBI
mRatBN7.24123,112,711 - 123,154,766 (+)NCBI
Rnor_6.04123,467,552 - 123,510,276 (-)NCBI
Rnor_5.04187,034,230 - 187,078,591 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006236872   ⟹   XP_006236934
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84124,666,792 - 124,711,968 (+)NCBI
mRatBN7.24123,109,555 - 123,154,766 (+)NCBI
Rnor_6.04123,467,552 - 123,513,447 (-)NCBI
Rnor_5.04187,034,230 - 187,078,591 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006236874   ⟹   XP_006236936
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84124,669,915 - 124,711,968 (+)NCBI
mRatBN7.24123,112,711 - 123,154,766 (+)NCBI
Rnor_6.04123,467,552 - 123,510,278 (-)NCBI
Rnor_5.04187,034,230 - 187,078,591 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006236877   ⟹   XP_006236939
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84124,684,260 - 124,711,968 (+)NCBI
mRatBN7.24123,127,054 - 123,154,766 (+)NCBI
Rnor_6.04123,467,552 - 123,495,443 (-)NCBI
Rnor_5.04187,034,230 - 187,078,591 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006236878   ⟹   XP_006236940
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84124,684,218 - 124,711,968 (+)NCBI
mRatBN7.24123,127,013 - 123,154,766 (+)NCBI
Rnor_6.04123,467,552 - 123,495,538 (-)NCBI
Rnor_5.04187,034,230 - 187,078,591 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039108305   ⟹   XP_038964233
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84124,684,256 - 124,711,968 (+)NCBI
mRatBN7.24123,127,051 - 123,154,766 (+)NCBI
RefSeq Acc Id: XM_039108306   ⟹   XP_038964234
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84124,684,259 - 124,711,968 (+)NCBI
mRatBN7.24123,127,053 - 123,154,766 (+)NCBI
RefSeq Acc Id: XM_039108307   ⟹   XP_038964235
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84124,690,155 - 124,711,968 (+)NCBI
mRatBN7.24123,132,949 - 123,154,766 (+)NCBI
RefSeq Acc Id: XM_063286655   ⟹   XP_063142725
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84124,676,345 - 124,711,968 (+)NCBI
RefSeq Acc Id: XM_063286656   ⟹   XP_063142726
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84124,666,789 - 124,711,968 (+)NCBI
RefSeq Acc Id: NP_001032569   ⟸   NM_001037492
- UniProtKB: Q3SWT5 (UniProtKB/Swiss-Prot),   A0A8I6A7H0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006236934   ⟸   XM_006236872
- Peptide Label: isoform X1
- UniProtKB: A0A0G2K1G1 (UniProtKB/TrEMBL),   A6IB88 (UniProtKB/TrEMBL),   A0A8I6A7H0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006236936   ⟸   XM_006236874
- Peptide Label: isoform X2
- UniProtKB: A0A8I6A7H0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006236933   ⟸   XM_006236871
- Peptide Label: isoform X1
- UniProtKB: A0A0G2K1G1 (UniProtKB/TrEMBL),   A6IB88 (UniProtKB/TrEMBL),   A0A8I6A7H0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006236940   ⟸   XM_006236878
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_006236939   ⟸   XM_006236877
- Peptide Label: isoform X4
- Sequence:
Ensembl Acc Id: ENSRNOP00000071826   ⟸   ENSRNOT00000080734
Ensembl Acc Id: ENSRNOP00000065688   ⟸   ENSRNOT00000073268
RefSeq Acc Id: XP_038964233   ⟸   XM_039108305
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038964234   ⟸   XM_039108306
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038964235   ⟸   XM_039108307
- Peptide Label: isoform X6
Ensembl Acc Id: ENSRNOP00000087291   ⟸   ENSRNOT00000120080
RefSeq Acc Id: XP_063142726   ⟸   XM_063286656
- Peptide Label: isoform X2
- UniProtKB: A0A8I6A7H0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063142725   ⟸   XM_063286655
- Peptide Label: isoform X1
- UniProtKB: A0A0G2K1G1 (UniProtKB/TrEMBL),   A6IB88 (UniProtKB/TrEMBL),   A0A8I6A7H0 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000108387   ⟸   ENSRNOT00000146243
Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q3SWT5-F1-model_v2 AlphaFold Q3SWT5 1-462 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13693257
Promoter ID:EPDNEW_R3778
Type:initiation region
Name:Slc41a3_1
Description:solute carrier family 41, member 3
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.04123,510,216 - 123,510,276EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1589573 AgrOrtholog
BioCyc Gene G2FUF-43730 BioCyc
Ensembl Genes ENSRNOG00000045821 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000073268 ENTREZGENE
  ENSRNOT00000073268.2 UniProtKB/Swiss-Prot
  ENSRNOT00000080734 ENTREZGENE
  ENSRNOT00000120080 ENTREZGENE
  ENSRNOT00000146243 ENTREZGENE
Gene3D-CATH 1.10.357.20 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:7134770 IMAGE-MGC_LOAD
InterPro SLC41_membr_dom UniProtKB/Swiss-Prot
  SLC41_membr_dom_sf UniProtKB/Swiss-Prot
  SLC41A1-3 UniProtKB/Swiss-Prot
KEGG Report rno:641603 UniProtKB/Swiss-Prot
MGC_CLONE MGC:124984 IMAGE-MGC_LOAD
NCBI Gene 641603 ENTREZGENE
PANTHER PTHR16228 UniProtKB/Swiss-Prot
  SOLUTE CARRIER FAMILY 41 MEMBER 3 UniProtKB/Swiss-Prot
Pfam MgtE UniProtKB/Swiss-Prot
PhenoGen Slc41a3 PhenoGen
RatGTEx ENSRNOG00000045821 RatGTEx
Superfamily-SCOP SSF161093 UniProtKB/Swiss-Prot
UniProt A0A0G2K1G1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6A7H0 ENTREZGENE, UniProtKB/TrEMBL
  A6IB88 ENTREZGENE, UniProtKB/TrEMBL
  Q3SWT5 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2006-11-19 Slc41a3  solute carrier family 41, member 3      Symbol and Name status set to provisional 70820 PROVISIONAL