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Gene: Slc41a3 (solute carrier family 41, member 3) Rattus norvegicus

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Symbol:

Slc41a3

Name:

solute carrier family 41, member 3

RGD ID:

1589573

Description:

Predicted to enable magnesium:sodium antiporter activity. Predicted to be involved in mitochondrial magnesium ion transmembrane transport. Predicted to be located in mitochondrial inner membrane. Predicted to be active in plasma membrane. Orthologous to human SLC41A3 (solute carrier family 41 member 3); INTERACTS WITH 1-naphthyl isothiocyanate; 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

solute carrier family 41 member 3

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	SLC41A3 (solute carrier family 41 member 3)	RGD	RGD
Mus musculus (house mouse):	Slc41a3 (solute carrier family 41, member 3)	RGD	RGD
Chinchilla lanigera (long-tailed chinchilla):	Slc41a3 (solute carrier family 41 member 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	SLC41A3 (solute carrier family 41 member 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	SLC41A3 (solute carrier family 41 member 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Slc41a3 (solute carrier family 41 member 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	SLC41A3 (solute carrier family 41 member 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	SLC41A3 (solute carrier family 41 member 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Slc41a3 (solute carrier family 41 member 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	SLC41A3 (solute carrier family 41 member 3)	Alliance	DIOPT (HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Slc41a3 (solute carrier family 41, member 3)	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	K07H8.2	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	K07H8.2	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG33181	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	slc41a3	Alliance	DIOPT (Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	4	124,666,789 - 124,711,968 (+)	NCBI		GRCr8
GRCr8 Ensembl	4	124,666,808 - 124,711,967 (+)	Ensembl		GRCr8 Ensembl
mRatBN7.2	4	123,109,555 - 123,154,766 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	4	123,112,748 - 123,154,766 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	4	128,595,397 - 128,622,433 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	4	124,369,815 - 124,396,849 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	4	122,994,391 - 123,021,427 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	4	123,467,552 - 123,513,447 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	4	123,467,549 - 123,510,217 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	4	187,034,230 - 187,078,591 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
Celera	4	112,051,998 - 112,078,495 (+)	NCBI		Celera
Cytogenetic Map	4	q34	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

alkaptonuria (ISO)

Primary Lymphedema with Myelodysplasia (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dichloroethane (ISO)

1-naphthyl isothiocyanate (EXP)

17beta-estradiol (EXP,ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP)

3-isobutyl-1-methyl-7H-xanthine (ISO)

4,4'-sulfonyldiphenol (ISO)

6-propyl-2-thiouracil (EXP)

acetamide (EXP)

acrylamide (EXP)

aflatoxin B1 (ISO)

all-trans-retinoic acid (ISO)

alpha-Zearalanol (EXP)

antirheumatic drug (ISO)

aristolochic acid A (ISO)

arsane (ISO)

arsenic atom (ISO)

arsenous acid (ISO)

atrazine (EXP)

benzo[a]pyrene (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP)

bisphenol F (ISO)

cadmium dichloride (ISO)

caffeine (ISO)

cantharidin (ISO)

carbon nanotube (ISO)

choline (ISO)

cyclosporin A (ISO)

cypermethrin (ISO)

dexamethasone (ISO)

diarsenic trioxide (ISO)

Dibutyl phosphate (ISO)

dibutyl phthalate (EXP)

diethylstilbestrol (EXP)

dimethylarsinic acid (ISO)

endosulfan (EXP)

folic acid (ISO)

FR900359 (ISO)

indometacin (ISO)

inulin (ISO)

L-methionine (ISO)

metformin (EXP)

methimazole (EXP)

methoxychlor (EXP)

methylarsonic acid (ISO)

N,N-diethyl-m-toluamide (EXP)

N-nitrosodiethylamine (ISO)

okadaic acid (ISO)

paracetamol (EXP,ISO)

perfluorooctane-1-sulfonic acid (ISO)

perfluorooctanoic acid (EXP)

permethrin (EXP)

pirinixic acid (ISO)

resveratrol (ISO)

sodium arsenate (ISO)

sodium arsenite (ISO)

Soman (EXP)

valproic acid (ISO)

zearalenone (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

magnesium ion transport (IEA)

metal ion transport (IEA)

mitochondrial magnesium ion transmembrane transport (ISO,ISS)

monoatomic cation transmembrane transport (IEA)

monoatomic cation transport (IEA)

monoatomic ion transport (IEA)

sodium ion transmembrane transport (IEA)

transmembrane transport (IEA)

Cellular Component

membrane (IEA)

mitochondrial inner membrane (IEA,ISO,ISS)

mitochondrion (IEA)

plasma membrane (IBA,ISO)

Molecular Function

inorganic cation transmembrane transporter activity (IEA)

magnesium:sodium antiporter activity (ISO,ISS)

monoatomic cation transmembrane transporter activity (IEA)

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	GOA pipeline	RGD automated data pipeline
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:12477932

Genomics

Comparative Map Data

Slc41a3
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	4	124,666,789 - 124,711,968 (+)	NCBI		GRCr8
GRCr8 Ensembl	4	124,666,808 - 124,711,967 (+)	Ensembl		GRCr8 Ensembl
mRatBN7.2	4	123,109,555 - 123,154,766 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	4	123,112,748 - 123,154,766 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	4	128,595,397 - 128,622,433 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	4	124,369,815 - 124,396,849 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	4	122,994,391 - 123,021,427 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	4	123,467,552 - 123,513,447 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	4	123,467,549 - 123,510,217 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	4	187,034,230 - 187,078,591 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
Celera	4	112,051,998 - 112,078,495 (+)	NCBI		Celera
Cytogenetic Map	4	q34	NCBI

SLC41A3
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	3	126,006,357 - 126,101,520 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	3	126,006,357 - 126,101,561 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	3	125,725,200 - 125,820,363 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	3	127,207,890 - 127,285,824 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	3	127,207,897 - 127,285,832	NCBI
Celera	3	124,148,794 - 124,244,070 (-)	NCBI		Celera
Cytogenetic Map	3	q21.2-q21.3	NCBI
HuRef	3	123,105,704 - 123,200,963 (-)	NCBI		HuRef
CHM1_1	3	125,687,978 - 125,783,164 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	3	128,738,761 - 128,834,029 (-)	NCBI		T2T-CHM13v2.0

Slc41a3
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	6	90,579,043 - 90,623,394 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	6	90,581,707 - 90,623,394 (+)	Ensembl		GRCm39 Ensembl
GRCm38	6	90,604,730 - 90,646,412 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	6	90,604,725 - 90,646,412 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	6	90,554,874 - 90,596,406 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	6	90,570,384 - 90,611,916 (+)	NCBI		MGSCv36	mm8
Celera	6	92,488,674 - 92,530,325 (+)	NCBI		Celera
Cytogenetic Map	6	D1	NCBI
cM Map	6	40.16	NCBI

Slc41a3
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955421	21,349,484 - 21,407,171 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955421	21,349,484 - 21,407,171 (-)	NCBI	ChiLan1.0	ChiLan1.0

SLC41A3
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	2	123,950,308 - 124,028,032 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	3	123,955,089 - 124,032,732 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	3	123,069,790 - 123,147,408 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	3	130,388,082 - 130,465,689 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	3	130,388,082 - 130,465,689 (-)	Ensembl	panpan1.1		panPan2

SLC41A3
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	20	120,589 - 211,554 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	20	115,011 - 211,075 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	20	206,778 - 297,424 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	20	179,929 - 270,742 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	20	179,933 - 276,163 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UNSW_CanFamBas_1.0	20	242,088 - 332,824 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	20	201,442 - 292,199 (-)	NCBI		UU_Cfam_GSD_1.0

Slc41a3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404942	19,236,253 - 19,257,034 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936898	433,932 - 454,752 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936898	433,977 - 454,746 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SLC41A3
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	7	53,672,130 - 53,748,727 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	7	53,672,131 - 53,741,033 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	7	58,703,341 - 58,726,780 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

SLC41A3
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	22	54,950,899 - 55,030,060 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	22	54,966,562 - 55,031,564 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666041	111,281,875 - 111,359,480 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Slc41a3
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624773	480,471 - 534,378 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624773	480,486 - 534,985 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Slc41a3
146 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	82
Count of miRNA genes:	57
Interacting mature miRNAs:	73
Transcripts:	ENSRNOT00000073268
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1582232	Gluco25	Glucose level QTL 25	3.6	0.0023	blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	4	86583980	149763391	Rat
631689	Scl4	Serum cholesterol level QTL 4	1.9	0.008	blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	4	96731383	141731383	Rat
1578655	Bmd11	Bone mineral density QTL 11	11		femur mineral mass (VT:0010011)	total volumetric bone mineral density (CMO:0001728)	4	92406430	137406430	Rat
1300116	Hrtrt5	Heart rate QTL 5	3.76		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	4	117737142	152833657	Rat
10755501	Bp390	Blood pressure QTL 390	2.5		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	4	27730518	170099664	Rat
61451	Ciaa4	CIA Autoantibody QTL 4	3.1		blood autoantibody amount (VT:0003725)	calculated serum anti-rat type 2 collagen autoantibody titer (CMO:0001281)	4	123870974	168870974	Rat
61330	Eau1	Experimental allergic uveoretinitis QTL 1		0.0003	uvea integrity trait (VT:0010551)	experimental autoimmune uveitis score (CMO:0001504)	4	26234499	134199155	Rat
737821	Hcar9	Hepatocarcinoma resistance QTL 9	3.7		liver integrity trait (VT:0010547)	volume of individual liver tumorous lesion (CMO:0001078)	4	106848959	168870974	Rat
731165	Uae21	Urinary albumin excretion QTL 21	2.4	0.0001	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	4	108206096	153206096	Rat
1549832	Bss3	Bone structure and strength QTL 3	11		femur morphology trait (VT:0000559)	femur midshaft cortical cross-sectional area (CMO:0001663)	4	111383604	156383604	Rat
70177	Xhs1	X-ray hypersensitivity QTL 1	25.1		intestine integrity trait (VT:0010554)	post-insult time to onset of moribundity (CMO:0001896)	4	82944895	154403548	Rat
6909128	Pancm4	Pancreatic morphology QTL 4	11.35		pancreas mass (VT:0010144)	pancreas wet weight (CMO:0000626)	4	27862204	126119996	Rat
61476	Aia3	Adjuvant induced arthritis QTL 3	3.9		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	4	75939858	140508796	Rat
1641919	Alc22	Alcohol consumption QTL 22		0.0005	drinking behavior trait (VT:0001422)	ethanol drink intake rate (CMO:0001407)	4	65060960	127749483	Rat
1354660	Salc1	Saline consumption QTL 1	11.26		drinking behavior trait (VT:0001422)	saline drink intake rate (CMO:0001627)	4	45429897	149763204	Rat
737978	Pia23	Pristane induced arthritis QTL 23	5.3		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	4	123870974	168870974	Rat
1578670	Bss14	Bone structure and strength QTL 14	16.4		femur morphology trait (VT:0000559)	bone trabecular cross-sectional area (CMO:0002311)	4	88883695	133883695	Rat
70201	Gcr1	Gastric cancer resistance QTL 1	2.7		stomach morphology trait (VT:0000470)	stomach tumor susceptibility score (CMO:0002043)	4	103834277	148834277	Rat
70200	Alc18	Alcohol consumption QTL 18	9.2		drinking behavior trait (VT:0001422)	ethanol intake volume to total fluid intake volume ratio (CMO:0001591)	4	57613339	151163960	Rat
2316958	Gluco58	Glucose level QTL 58	10		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	4	12212457	182430611	Rat
1578662	Bss15	Bone structure and strength QTL 15	19.6		femur width (VT:1000666)	femoral neck width (CMO:0001695)	4	88883695	133883695	Rat
2302049	Pia32	Pristane induced arthritis QTL 32	5.1	0.001	blood autoantibody amount (VT:0003725)	serum immunoglobulin G-type rheumatoid factor level relative to an arbitrary reference serum (CMO:0002112)	4	107346299	152346299	Rat
6478763	Anxrr46	Anxiety related response QTL 46		0.07428	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	112427331	157427331	Rat
6478760	Anxrr45	Anxiety related response QTL 45		0.06717	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	112427331	157427331	Rat
1331802	Srn5	Serum renin concentration QTL 5	3.045		renin activity (VT:0005581)	plasma renin activity level (CMO:0000116)	4	117559384	162559384	Rat
738009	Sach4	Saccharine consumption QTL 4	4.9	0.000016	consumption behavior trait (VT:0002069)	saccharin intake volume to total fluid intake volume ratio (CMO:0001601)	4	60916264	184426481	Rat
7207480	Bss105	Bone structure and strength QTL 105	8.1		femur strength trait (VT:0010010)	femur midshaft polar moment of inertia (CMO:0001669)	4	111383604	156383604	Rat
634335	Anxrr16	Anxiety related response QTL 16	7.22		locomotor behavior trait (VT:0001392)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	4	94638356	168870820	Rat
631646	Stl4	Serum triglyceride level QTL 4	6.5	0.0001	blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	4	74169813	134199155	Rat
634334	Xhs3	X-ray hypersensitivity QTL 3	10		intestine integrity trait (VT:0010554)	post-insult time to onset of moribundity (CMO:0001896)	4	86058928	131411333	Rat
61406	Scwia1	Streptococcal cell wall induced arthritis QTL 1	2.3		joint integrity trait (VT:0010548)	experimental arthritis severity measurement (CMO:0001459)	4	75939858	140508796	Rat
631511	Pia7	Pristane induced arthritis QTL 7	4.3		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	4	123870974	168870974	Rat
1354612	Foco1	Food consumption QTL 1	8.87		eating behavior trait (VT:0001431)	food intake rate (CMO:0000427)	4	45429897	149763204	Rat
634347	Hcar8	Hepatocarcinoma resistance QTL 8	5.8		liver integrity trait (VT:0010547)	liver tumorous lesion area to total liver area ratio (CMO:0001075)	4	124700988	169700988	Rat
2303168	Bp330	Blood pressure QTL 330	4.25	0.017	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	4	5889999	148002343	Rat
738031	Alc14	Alcohol consumption QTL 14	7.6	0.00003	consumption behavior trait (VT:0002069)	ethanol drink intake rate to body weight ratio (CMO:0001616)	4	60916264	174095838	Rat
1576316	Ept5	Estrogen-induced pituitary tumorigenesis QTL 5	3.8		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	4	100752691	179366077	Rat
631662	Hcar2	Hepatocarcinoma resistance QTL 2	3.1	0.0003	liver integrity trait (VT:0010547)	volume of individual liver tumorous lesion (CMO:0001078)	4	84349032	129349032	Rat
1576305	Emca6	Estrogen-induced mammary cancer QTL 6	5.8		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	4	45429709	157555683	Rat
61418	Pia5	Pristane induced arthritis QTL 5	4.5		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	4	63245026	129846354	Rat
738016	Alc16	Alcohol consumption QTL 16	3.6	0.00015	consumption behavior trait (VT:0002069)	ethanol drink intake rate to body weight ratio (CMO:0001616)	4	60916264	184426481	Rat
1358202	Gluco11	Glucose level QTL 11	2.4	0.02	adipocyte glucose uptake trait (VT:0004185)	absolute change in adipocyte glucose uptake (CMO:0000873)	4	86709649	168870974	Rat
1641833	Alc21	Alcohol consumption QTL 21	8.6	0.0001	drinking behavior trait (VT:0001422)	ethanol drink intake rate (CMO:0001407)	4	57664252	127749483	Rat
2306899	Bp338	Blood pressure QTL 338		0.071	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	4	82336765	127336765	Rat
631674	Iddm14	Insulin dependent diabetes mellitus QTL 14			blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	4	65495851	159259805	Rat
2293840	Kiddil9	Kidney dilation QTL 9	2.9		kidney pelvis morphology trait (VT:0004194)	hydronephrosis severity score (CMO:0001208)	4	113634167	149763391	Rat
12798519	Anxrr54	Anxiety related response QTL 54	2.54	0.05	locomotor behavior trait (VT:0001392)	distance moved per unit of time into, out of or within a discrete space in an experimental apparatus (CMO:0001493)	4	116184844	161184844	Rat
12798523	Anxrr56	Anxiety related response QTL 56	2.83	0.05	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	86583980	131583980	Rat
12798527	Anxrr58	Anxiety related response QTL 58	4.11	0.05	locomotor behavior trait (VT:0001392)	distance moved per unit of time into, out of or within a discrete space in an experimental apparatus (CMO:0001493)	4	121020385	148834277	Rat

Markers in Region

D4Rat48

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	4	124,700,988 - 124,701,200 (+)	Marker Load Pipeline
mRatBN7.2	4	123,143,783 - 123,143,996 (-)	MAPPER	mRatBN7.2
Rnor_6.0	4	123,478,354 - 123,478,566	NCBI	Rnor6.0
Rnor_5.0	4	187,067,577 - 187,067,789	UniSTS	Rnor5.0
Celera	4	112,067,513 - 112,067,725	UniSTS
RH 3.4 Map	4	733.62	RGD
RH 3.4 Map	4	733.62	UniSTS
RH 2.0 Map	4	792.2	RGD
SHRSP x BN Map	4	54.33	RGD

D4Got82

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	4	123,154,343 - 123,154,460 (-)	MAPPER	mRatBN7.2
Rnor_6.0	4	123,467,858 - 123,467,974	NCBI	Rnor6.0
Rnor_5.0	4	187,078,169 - 187,078,285	UniSTS	Rnor5.0
Celera	4	112,078,071 - 112,078,189	UniSTS
RH 3.4 Map	4	733.53	RGD
RH 3.4 Map	4	733.53	UniSTS
RH 2.0 Map	4	783.8	RGD

AU048745

Rat Assembly	Chr	Position (strand)	Source
Cytogenetic Map	5	q32	UniSTS
Cytogenetic Map	13	q24	UniSTS
Cytogenetic Map	6	q32	UniSTS
Cytogenetic Map	17	p12	UniSTS
Cytogenetic Map	16	p14	UniSTS
Cytogenetic Map	13	q26	UniSTS
Cytogenetic Map	10	q22	UniSTS
Cytogenetic Map	7	q11	UniSTS
Cytogenetic Map	8	q24	UniSTS
Cytogenetic Map	5	q21	UniSTS
Cytogenetic Map	4	q24	UniSTS
Cytogenetic Map	2	q11	UniSTS
Cytogenetic Map	1	q54	UniSTS
Cytogenetic Map	1	q36	UniSTS
Cytogenetic Map	18	p11	UniSTS
Cytogenetic Map	13	q13	UniSTS
Cytogenetic Map	10	q24	UniSTS
Cytogenetic Map	8	q31	UniSTS
Cytogenetic Map	3	q21	UniSTS
Cytogenetic Map	13	p13	UniSTS
Cytogenetic Map	1	q21	UniSTS
Cytogenetic Map	11	q23	UniSTS
Cytogenetic Map	10	q31	UniSTS
Cytogenetic Map	16	q12.2	UniSTS
Cytogenetic Map	3	q24	UniSTS
Cytogenetic Map	5	q36	UniSTS
Cytogenetic Map	3	p13	UniSTS

RH133572

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	4	123,154,544 - 123,154,732 (-)	MAPPER	mRatBN7.2
Rnor_6.0	4	123,467,586 - 123,467,773	NCBI	Rnor6.0
Rnor_5.0	4	187,078,370 - 187,078,557	UniSTS	Rnor5.0
Celera	4	112,078,274 - 112,078,461	UniSTS
RH 3.4 Map	4	734.01	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
9	11	49	113	91	90	59	25	59	6	218	97	11	93	45	60	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001037492	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006236871	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006236872	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006236873	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006236874	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006236875	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006236877	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006236878	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039108305	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039108306	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039108307	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063286655	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063286656	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC104698	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473957	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000004	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000073268 ⟹ ENSRNOP00000065688

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	4	124,684,210 - 124,711,966 (+)	Ensembl
mRatBN7.2 Ensembl	4	123,127,763 - 123,154,765 (+)	Ensembl
Rnor_6.0 Ensembl	4	123,467,553 - 123,494,742 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000080734 ⟹ ENSRNOP00000071826

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	4	124,666,808 - 124,711,967 (+)	Ensembl
mRatBN7.2 Ensembl	4	123,112,748 - 123,154,766 (+)	Ensembl
Rnor_6.0 Ensembl	4	123,467,549 - 123,510,217 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000120080 ⟹ ENSRNOP00000087291

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	4	124,668,810 - 124,711,967 (+)	Ensembl
mRatBN7.2 Ensembl	4	123,119,769 - 123,154,766 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000146243 ⟹ ENSRNOP00000108387

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	4	124,684,210 - 124,711,966 (+)	Ensembl

RefSeq Acc Id:

NM_001037492 ⟹ NP_001032569

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	124,684,967 - 124,711,968 (+)	NCBI
mRatBN7.2	4	123,127,763 - 123,154,766 (+)	NCBI
Rnor_6.0	4	123,467,552 - 123,494,742 (-)	NCBI
Rnor_5.0	4	187,034,230 - 187,078,591 (+)	NCBI
Celera	4	112,051,998 - 112,078,495 (+)	RGD

Sequence:

show sequence

CTGAGGAGAACCTGACCAGTGGAATGGACAGAGGACACCGGCAGCCTCCTGAATGAGGCTCTGA
GCAGGTCTGGCATTGTTTGCTCTGGCCCTCAGCCCAGGGACTCTCAGAGACCCACTGTGGCGCT
TCCTGGAAAGCTTCTGTCTGTGTGGACCTCTGCAGAAGAGAGCCTTGGAGGGCAGGGAGGAGAG
AGGACAGACTCGACCGGGGCCCAACCATGGTCGTCACTCAGCTCAGCCTTGAGTTCCGCTTTCA
GGGCAAGAAGCTTCGAGGCTTCAGCTGTGAGCTAACCCGCTCCCCTCATGGGGTCCTCCCTGAA
TCTGTCCTCAGCACCACCTGCCAGGTCGCCATACCTATACTGTTGTCCGGCCTGGGCATGATGA
CGGCTGGCTTGGTGATGAACACTGTCCAACACTGGCCAGTGTTCAGAGATGTTAAAGACCTGCT
GACGTTGGTGCCGCCCCTTGTTGGTCTGAAGGGAAACCTGGAAATGACGCTGGCATCTCGACTC
TCTACGTCTGCCAACACTGGGCAAATCGATGACCGCCAGGAGAGGTACAGAATCATCAGCAGCA
ACCTCGCTGTGGTTCAGGTGCAGGCCACTGTTGTGGGGCTCCTGGCTGCAGTGGCCTCACTGAT
GCTGGGCACAGTGTCCCACGAGGAGTTCGATTGGGCCAAGGTGGCCTTGCTGTGCACAAGCAGT
GTCATCACCGCCTTCCTCGCTGCCTTGGCCCTAGGAATTCTAATGATCTGCATAGTGATTGGTG
CTCGGAAGTTTGGGGTGAACCCTGATAACATCGCCACACCCATTGCAGCCAGCCTGGGAGACCT
CATCACGCTGTCTATCCTGGCCCTGATGAGCAGCTTCTTCTACAGCCACAGAGACACGTGGTAT
CTGACGCCTCTGGTCTGCATTGGCTTCTTGGCTCTCACCCCTCTGTGGATCTTCATTGCCAAGC
AGAACCCACCCATCATGAAGATCCTGAAGTATGGGTGGTTTCCCATTATCCTAGCCATGATCAT
CAGCAGTTTCGGAGGCCTCATCCTGAGCAAAACCATTTCGAAACATCAGTTTAAAGGCATGGCT
GTCCTGACTCCAGTTATATGTGGTGTCGGTGGCAACCTGGTGGCCATTCAGACCAGCCGCATCT
CCACCTTTCTGCATATGTGGAGCACACCTGGGGTCCTCCCTGTCCAGATGAAGAGATTCTGGCC
TAACCCTTGCTTCACTTTCTGCTCCTCAGAAATCAATTCTGTATCAGCACGAGTCCTGCTCTTT
CTGGTGGTCCCAGGACACCTGATTTTCTTCTACCTCATCTGCCTGGTGGAAGGCCAGTCAGTGA
CAAGCAGCAAGATCTTCGTGTTACTGTACCTGATGGCGGGCATGATGCAGGTGGTAATCCTGCT
GTACCTAGCGGAAGTGATGGTTCGACTGACCTGGCACCAAGCCCTGGATCCTGACAACCACTGT
ATCCCCTACCTCACGGGCCTAGGGGACCTGCTGGGCACTAGCCTGCTGGCACTGTGCTTCCTCC
TGGACTGGTTACTGAGGGGCAGAGCTAATCTTGCGGAGCTGGTCTCAGAGCTGGTTTCTGTGCC
TCCCTGACTGAGCCTACCACCCGCAGGTCTCCATGAAACTTTCCCTCACACCCACAGTGTCTGG
CAGGCCATTCCCCTGCTGGGGCCTCGAGCTGCTAAACATCTGCTTGCACGGTGGCCTTACCAGT
CTGCCAGGGAGACAAGCAGACACCTTGATTCTGAAGTTGGTAGCCAAGCCTCAGGTAGAGCCCT
GACATCAGGAGCTCTGCTTGCAAGTGTGTGAGTCTGTGTGTGCCTGGACAGTGTGTGTGTGTGT
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAGGGCAGGCTGTTCTAACCTGAAGATGC
TGAGGAAGGAGCCTGTTGGTGATCCATTGGGTGGATCAGGATGGACCTCCTCTGCGTTCCCAGG
GCTCAGGACTACCCATGCCCTGACTTTGCTGCCATCACTGGGCTCAACTCTCTGGGTTCATGTT
ACTAGTGCTCTGGGCCCAGTGACCATGCACCTTCACCCCAGGCAGGCCCTGTGTACCCCTCATC
TATACTCCAGCATTTAATCTCGTGGCTGCTTTCTTTTTATTTCCCACTTCCTCTGTTTCATAGC
AGAACCTTCTGTTTAGGTTCTGGTGATCAAGAAATATGTAATAAAACATAGCTGATATTGCAAA
AAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006236871 ⟹ XP_006236933

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	124,669,639 - 124,711,968 (+)	NCBI
mRatBN7.2	4	123,112,711 - 123,154,766 (+)	NCBI
Rnor_6.0	4	123,467,552 - 123,510,276 (-)	NCBI
Rnor_5.0	4	187,034,230 - 187,078,591 (+)	NCBI

Sequence:

show sequence

CGGACGCCAAGGCAGGGCGGGGTTGGCCAGCCTGTAGCCCTTCCCGCTTCCTCCCGCCGCAGGC
CTCCACAGTGTCCAGCGCGCGCCTGGCCGCCTCGCTTTCGCCGCGGGCCAAGAGAGGACCGGTC
AGGGCTGCTGGGCTCAGCCGTGTGCTGATGGAAGGGACAGAGGCCCGACAGCGGAGACTGGAAG
GCTGTGGCAGGCCAAAGGAGCTGGGGCCACCACCCAGCCACAATGCAGGAAGACTCCCAGAGGC
TTCCGAAGATGGACATCCGGGGATCTCCGAGAGCCAATGCGTGGATGCTAAATCACTGGAGGTC
CAGTCCAGCAGGGAGACTGCCATGATCATTGGTTTTCAAGTGGTAATACCCTTCCTGCTTGCAG
GCCTGGGGCTGTCCTGGGCTGGCTTGCTTCTCAACTATTTCCAGCACTGGCCAGTGTTCAGAGA
TGTTAAAGACCTGCTGACGTTGGTGCCGCCCCTTGTTGGTCTGAAGGGAAACCTGGAAATGACG
CTGGCATCTCGACTCTCTACGTCTGCCAACACTGGGCAAATCGATGACCGCCAGGAGAGGTACA
GAATCATCAGCAGCAACCTCGCTGTGGTTCAGGTGCAGGCCACTGTTGTGGGGCTCCTGGCTGC
AGTGGCCTCACTGATGCTGGGCACAGTGTCCCACGAGGAGTTCGATTGGGCCAAGGTGGCCTTG
CTGTGCACAAGCAGTGTCATCACCGCCTTCCTCGCTGCCTTGGCCCTAGGAATTCTAATGATCT
GCATAGTGATTGGTGCTCGGAAGTTTGGGGTGAACCCTGATAACATCGCCACACCCATTGCAGC
CAGCCTGGGAGACCTCATCACGCTGTCTATCCTGGCCCTGATGAGCAGCTTCTTCTACAGCCAC
AGAGACACGTGGTATCTGACGCCTCTGGTCTGCATTGGCTTCTTGGCTCTCACCCCTCTGTGGA
TCTTCATTGCCAAGCAGAACCCACCCATCATGAAGATCCTGAAGTATGGGTGGTTTCCCATTAT
CCTAGCCATGATCATCAGCAGTTTCGGAGGCCTCATCCTGAGCAAAACCATTTCGAAACATCAG
TTTAAAGGCATGGCTGTCCTGACTCCAGTTATATGTGGTGTCGGTGGCAACCTGGTGGCCATTC
AGACCAGCCGCATCTCCACCTTTCTGCATATGTGGAGCACACCTGGGGTCCTCCCTGTCCAGAT
GAAGAGATTCTGGCCTAACCCTTGCTTCACTTTCTGCTCCTCAGAAATCAATTCTGTATCAGCA
CGAGTCCTGCTCTTTCTGGTGGTCCCAGGACACCTGATTTTCTTCTACCTCATCTGCCTGGTGG
AAGGCCAGTCAGTGACAAGCAGCAAGATCTTCGTGTTACTGTACCTGATGGCGGGCATGATGCA
GGTGGTAATCCTGCTGTACCTAGCGGAAGTGATGGTTCGACTGACCTGGCACCAAGCCCTGGAT
CCTGACAACCACTGTATCCCCTACCTCACGGGCCTAGGGGACCTGCTGGGCACTAGCCTGCTGG
CACTGTGCTTCCTCCTGGACTGGTTACTGAGGGGCAGAGCTAATCTTGCGGAGCTGGTCTCAGA
GCTGGTTTCTGTGCCTCCCTGACTGAGCCTACCACCCGCAGGTCTCCATGAAACTTTCCCTCAC
ACCCACAGTGTCTGGCAGGCCATTCCCCTGCTGGGGCCTCGAGCTGCTAAACATCTGCTTGCAC
GGTGGCCTTACCAGTCTGCCAGGGAGACAAGCAGACACCTTGATTCTGAAGTTGGTAGCCAAGC
CTCAGGTAGAGCCCTGACATCAGGAGCTCTGCTTGCAAGTGTGTGAGTCTGTGTGTGCCTGGAC
AGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAGGGCAGGCTGTT
CTAACCTGAAGATGCTGAGGAAGGAGCCTGTTGGTGATCCATTGGGTGGATCAGGATGGACCTC
CTCTGCGTTCCCAGGGCTCAGGACTACCCATGCCCTGACTTTGCTGCCATCACTGGGCTCAACT
CTCTGGGTTCATGTTACTAGTGCTCTGGGCCCAGTGACCATGCACCTTCACCCCAGGCAGGCCC
TGTGTACCCCTCATCTATACTCCAGCATTTAATCTCGTGGCTGCTTTCTTTTTATTTCCCACTT
CCTCTGTTTCATAGCAGAACCTTCTGTTTAGGTTCTGGTGATCAAGAAATATGTAATAAAACAT
AGCTGATATTGCA

hide sequence

RefSeq Acc Id:

XM_006236872 ⟹ XP_006236934

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	124,666,792 - 124,711,968 (+)	NCBI
mRatBN7.2	4	123,109,555 - 123,154,766 (+)	NCBI
Rnor_6.0	4	123,467,552 - 123,513,447 (-)	NCBI
Rnor_5.0	4	187,034,230 - 187,078,591 (+)	NCBI

Sequence:

show sequence

CCTGGGTGCTGTCCCTGAGGACTGCAGCAAGTCAGGTCTCCAGACAGCAACAGTACTTACTGCT
GTCCCCACTGTGGCCCCACGAGCTGATCATCTGATCGCGACTCCCACCTTCCTCCTCCAGACAC
AGCAACAGTGCTGAGGCCACCGCAGAGTCCACACTGAGAAGTGCTGTCAGGGCTGCTGGGCTCA
GCCGTGTGCTGATGGAAGGGACAGAGGCCCGACAGCGGAGACTGGAAGGCTGTGGCAGGCCAAA
GGAGCTGGGGCCACCACCCAGCCACAATGCAGGAAGACTCCCAGAGGCTTCCGAAGATGGACAT
CCGGGGATCTCCGAGAGCCAATGCGTGGATGCTAAATCACTGGAGGTCCAGTCCAGCAGGGAGA
CTGCCATGATCATTGGTTTTCAAGTGGTAATACCCTTCCTGCTTGCAGGCCTGGGGCTGTCCTG
GGCTGGCTTGCTTCTCAACTATTTCCAGCACTGGCCAGTGTTCAGAGATGTTAAAGACCTGCTG
ACGTTGGTGCCGCCCCTTGTTGGTCTGAAGGGAAACCTGGAAATGACGCTGGCATCTCGACTCT
CTACGTCTGCCAACACTGGGCAAATCGATGACCGCCAGGAGAGGTACAGAATCATCAGCAGCAA
CCTCGCTGTGGTTCAGGTGCAGGCCACTGTTGTGGGGCTCCTGGCTGCAGTGGCCTCACTGATG
CTGGGCACAGTGTCCCACGAGGAGTTCGATTGGGCCAAGGTGGCCTTGCTGTGCACAAGCAGTG
TCATCACCGCCTTCCTCGCTGCCTTGGCCCTAGGAATTCTAATGATCTGCATAGTGATTGGTGC
TCGGAAGTTTGGGGTGAACCCTGATAACATCGCCACACCCATTGCAGCCAGCCTGGGAGACCTC
ATCACGCTGTCTATCCTGGCCCTGATGAGCAGCTTCTTCTACAGCCACAGAGACACGTGGTATC
TGACGCCTCTGGTCTGCATTGGCTTCTTGGCTCTCACCCCTCTGTGGATCTTCATTGCCAAGCA
GAACCCACCCATCATGAAGATCCTGAAGTATGGGTGGTTTCCCATTATCCTAGCCATGATCATC
AGCAGTTTCGGAGGCCTCATCCTGAGCAAAACCATTTCGAAACATCAGTTTAAAGGCATGGCTG
TCCTGACTCCAGTTATATGTGGTGTCGGTGGCAACCTGGTGGCCATTCAGACCAGCCGCATCTC
CACCTTTCTGCATATGTGGAGCACACCTGGGGTCCTCCCTGTCCAGATGAAGAGATTCTGGCCT
AACCCTTGCTTCACTTTCTGCTCCTCAGAAATCAATTCTGTATCAGCACGAGTCCTGCTCTTTC
TGGTGGTCCCAGGACACCTGATTTTCTTCTACCTCATCTGCCTGGTGGAAGGCCAGTCAGTGAC
AAGCAGCAAGATCTTCGTGTTACTGTACCTGATGGCGGGCATGATGCAGGTGGTAATCCTGCTG
TACCTAGCGGAAGTGATGGTTCGACTGACCTGGCACCAAGCCCTGGATCCTGACAACCACTGTA
TCCCCTACCTCACGGGCCTAGGGGACCTGCTGGGCACTAGCCTGCTGGCACTGTGCTTCCTCCT
GGACTGGTTACTGAGGGGCAGAGCTAATCTTGCGGAGCTGGTCTCAGAGCTGGTTTCTGTGCCT
CCCTGACTGAGCCTACCACCCGCAGGTCTCCATGAAACTTTCCCTCACACCCACAGTGTCTGGC
AGGCCATTCCCCTGCTGGGGCCTCGAGCTGCTAAACATCTGCTTGCACGGTGGCCTTACCAGTC
TGCCAGGGAGACAAGCAGACACCTTGATTCTGAAGTTGGTAGCCAAGCCTCAGGTAGAGCCCTG
ACATCAGGAGCTCTGCTTGCAAGTGTGTGAGTCTGTGTGTGCCTGGACAGTGTGTGTGTGTGTG
TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAGGGCAGGCTGTTCTAACCTGAAGATGCT
GAGGAAGGAGCCTGTTGGTGATCCATTGGGTGGATCAGGATGGACCTCCTCTGCGTTCCCAGGG
CTCAGGACTACCCATGCCCTGACTTTGCTGCCATCACTGGGCTCAACTCTCTGGGTTCATGTTA
CTAGTGCTCTGGGCCCAGTGACCATGCACCTTCACCCCAGGCAGGCCCTGTGTACCCCTCATCT
ATACTCCAGCATTTAATCTCGTGGCTGCTTTCTTTTTATTTCCCACTTCCTCTGTTTCATAGCA
GAACCTTCTGTTTAGGTTCTGGTGATCAAGAAATATGTAATAAAACATAGCTGATATTGCA

hide sequence

RefSeq Acc Id:

XM_006236874 ⟹ XP_006236936

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	124,669,915 - 124,711,968 (+)	NCBI
mRatBN7.2	4	123,112,711 - 123,154,766 (+)	NCBI
Rnor_6.0	4	123,467,552 - 123,510,278 (-)	NCBI
Rnor_5.0	4	187,034,230 - 187,078,591 (+)	NCBI

Sequence:

show sequence

TCCGGACGCCAAGGCAGGGCGGGGTTGGCCAGCCTGTAGCCCTTCCCGCTTCCTCCCGCCGCAG
GCCTCCACAGTGTCCAGCGCGCGCCTGGCCGCCTCGCTTTCGCCGCGGGCCAAGAGAGGACCGG
TCAGGGCTGCTGGGCTCAGCCGTGTGCTGATGGAAGGGACAGAGGCCCGACAGCGGAGACTGGA
AGGCTGTGGCAGGCCAAAGGAGCTGGGGCCACCACCCAGCCACAATGCAGGAAGACTCCCAGAG
GCTTCCGAAGATGGACATCCGGGGATCTCCGAGAGCCAATGCGTGGATGCTAAATCACTGGAGG
TCCAGTCCAGCAGGGAGACTGCCATGATCATTGGTTTTCAAGTGGTAATACCCTTCCTGCTTGC
AGGCCTGGGGCTGTCCTGGGCTGGCTTGCTTCTCAACTATTTCCAGCACTGGCCAGTGTTCAGA
GATGTTAAAGACCTGCTGACGTTGGTGCCGCCCCTTGTTGGTCTGAAGGGAAACCTGGAAATGA
CGCTGGCATCTCGACTCTCTACGTCTGTGCAGGCCACTGTTGTGGGGCTCCTGGCTGCAGTGGC
CTCACTGATGCTGGGCACAGTGTCCCACGAGGAGTTCGATTGGGCCAAGGTGGCCTTGCTGTGC
ACAAGCAGTGTCATCACCGCCTTCCTCGCTGCCTTGGCCCTAGGAATTCTAATGATCTGCATAG
TGATTGGTGCTCGGAAGTTTGGGGTGAACCCTGATAACATCGCCACACCCATTGCAGCCAGCCT
GGGAGACCTCATCACGCTGTCTATCCTGGCCCTGATGAGCAGCTTCTTCTACAGCCACAGAGAC
ACGTGGTATCTGACGCCTCTGGTCTGCATTGGCTTCTTGGCTCTCACCCCTCTGTGGATCTTCA
TTGCCAAGCAGAACCCACCCATCATGAAGATCCTGAAGTATGGGTGGTTTCCCATTATCCTAGC
CATGATCATCAGCAGTTTCGGAGGCCTCATCCTGAGCAAAACCATTTCGAAACATCAGTTTAAA
GGCATGGCTGTCCTGACTCCAGTTATATGTGGTGTCGGTGGCAACCTGGTGGCCATTCAGACCA
GCCGCATCTCCACCTTTCTGCATATGTGGAGCACACCTGGGGTCCTCCCTGTCCAGATGAAGAG
ATTCTGGCCTAACCCTTGCTTCACTTTCTGCTCCTCAGAAATCAATTCTGTATCAGCACGAGTC
CTGCTCTTTCTGGTGGTCCCAGGACACCTGATTTTCTTCTACCTCATCTGCCTGGTGGAAGGCC
AGTCAGTGACAAGCAGCAAGATCTTCGTGTTACTGTACCTGATGGCGGGCATGATGCAGGTGGT
AATCCTGCTGTACCTAGCGGAAGTGATGGTTCGACTGACCTGGCACCAAGCCCTGGATCCTGAC
AACCACTGTATCCCCTACCTCACGGGCCTAGGGGACCTGCTGGGCACTAGCCTGCTGGCACTGT
GCTTCCTCCTGGACTGGTTACTGAGGGGCAGAGCTAATCTTGCGGAGCTGGTCTCAGAGCTGGT
TTCTGTGCCTCCCTGACTGAGCCTACCACCCGCAGGTCTCCATGAAACTTTCCCTCACACCCAC
AGTGTCTGGCAGGCCATTCCCCTGCTGGGGCCTCGAGCTGCTAAACATCTGCTTGCACGGTGGC
CTTACCAGTCTGCCAGGGAGACAAGCAGACACCTTGATTCTGAAGTTGGTAGCCAAGCCTCAGG
TAGAGCCCTGACATCAGGAGCTCTGCTTGCAAGTGTGTGAGTCTGTGTGTGCCTGGACAGTGTG
TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAGGGCAGGCTGTTCTAACC
TGAAGATGCTGAGGAAGGAGCCTGTTGGTGATCCATTGGGTGGATCAGGATGGACCTCCTCTGC
GTTCCCAGGGCTCAGGACTACCCATGCCCTGACTTTGCTGCCATCACTGGGCTCAACTCTCTGG
GTTCATGTTACTAGTGCTCTGGGCCCAGTGACCATGCACCTTCACCCCAGGCAGGCCCTGTGTA
CCCCTCATCTATACTCCAGCATTTAATCTCGTGGCTGCTTTCTTTTTATTTCCCACTTCCTCTG
TTTCATAGCAGAACCTTCTGTTTAGGTTCTGGTGATCAAGAAATATGTAATAAAACATAGCTGA
TATTGCA

hide sequence

RefSeq Acc Id:

XM_006236877 ⟹ XP_006236939

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	124,684,260 - 124,711,968 (+)	NCBI
mRatBN7.2	4	123,127,054 - 123,154,766 (+)	NCBI
Rnor_6.0	4	123,467,552 - 123,495,443 (-)	NCBI
Rnor_5.0	4	187,034,230 - 187,078,591 (+)	NCBI

Sequence:

show sequence

ATGGGACGGGGAGGCCAGGACTCCAAGGTGGACTCTGGGTTAGTAGAAGCCAGTCTGCCCTTCA
GCTTGGGACCTCTGCTGGCTGGGACCTCAGTTTGTATTCTGTTGGCTCTTAGGCCTGGAAGTGC
TGCTCCTGGCCTGTGGCATGCACAAAGGGGTGCTCTCAGCATCCCTAGGCTCCAGTGCAGCTTC
CCAGTTGGGCCCCTTCCCTCTGGTGGGATCAGCAGGGCCTGTTCTGATCTTTCTGAGCAGAAGC
AAGCTGGATAAAGTCTCCTGGGCCTTTTAGAGAAAGCAGGGCCCCAGTTCTTCTGTGAGCACAG
CTTTATATCGTGGCTGTGAGCCCCCGCACACCGGCATAGAGCTGGCGACAGGTGTAACTTCCCT
CCTGCAGTCCCTCAGAGTCCTTGACCTTGCAGGACAGAACCCCATACATGGGCCTGGGTGGGTG
ACCCTGGCGCTGTGGTCTCCGGGCCCTTCTCTGCCAGAGCAAAGCAGCTCATGGCACGTGTGCA
GAGGACACAGAGGGTGGTGCTAACTTCTGCGTGGGTACTTACCAGGACCAGGCCCATGTGGGTT
GTGTCTCTGCCCAGCCTGGCTAGCGTGGGCTGGACTACTGGACACTGTCAAGGTCGCTGCTGAG
GGACAGCAAGCCTCTCTGGCAGGCTGGAAGAGGGAGGTCCCGGCAGATCCACAGCTGCACTCTG
AGGAGAACCTGACCAGTGGAATGGACAGAGGACACCGGCAGCCTCCTGAATGAGGCTCTGAGCA
GCACTGGCCAGTGTTCAGAGATGTTAAAGACCTGCTGACGTTGGTGCCGCCCCTTGTTGGTCTG
AAGGGAAACCTGGAAATGACGCTGGCATCTCGACTCTCTACGTCTGCCAACACTGGGCAAATCG
ATGACCGCCAGGAGAGGTACAGAATCATCAGCAGCAACCTCGCTGTGGTTCAGGTGCAGGCCAC
TGTTGTGGGGCTCCTGGCTGCAGTGGCCTCACTGATGCTGGGCACAGTGTCCCACGAGGAGTTC
GATTGGGCCAAGGTGGCCTTGCTGTGCACAAGCAGTGTCATCACCGCCTTCCTCGCTGCCTTGG
CCCTAGGAATTCTAATGATCTGCATAGTGATTGGTGCTCGGAAGTTTGGGGTGAACCCTGATAA
CATCGCCACACCCATTGCAGCCAGCCTGGGAGACCTCATCACGCTGTCTATCCTGGCCCTGATG
AGCAGCTTCTTCTACAGCCACAGAGACACGTGGTATCTGACGCCTCTGGTCTGCATTGGCTTCT
TGGCTCTCACCCCTCTGTGGATCTTCATTGCCAAGCAGAACCCACCCATCATGAAGATCCTGAA
GTATGGGTGGTTTCCCATTATCCTAGCCATGATCATCAGCAGTTTCGGAGGCCTCATCCTGAGC
AAAACCATTTCGAAACATCAGTTTAAAGGCATGGCTGTCCTGACTCCAGTTATATGTGGTGTCG
GTGGCAACCTGGTGGCCATTCAGACCAGCCGCATCTCCACCTTTCTGCATATGTGGAGCACACC
TGGGGTCCTCCCTGTCCAGATGAAGAGATTCTGGCCTAACCCTTGCTTCACTTTCTGCTCCTCA
GAAATCAATTCTGTATCAGCACGAGTCCTGCTCTTTCTGGTGGTCCCAGGACACCTGATTTTCT
TCTACCTCATCTGCCTGGTGGAAGGCCAGTCAGTGACAAGCAGCAAGATCTTCGTGTTACTGTA
CCTGATGGCGGGCATGATGCAGGTGGTAATCCTGCTGTACCTAGCGGAAGTGATGGTTCGACTG
ACCTGGCACCAAGCCCTGGATCCTGACAACCACTGTATCCCCTACCTCACGGGCCTAGGGGACC
TGCTGGGCACTAGCCTGCTGGCACTGTGCTTCCTCCTGGACTGGTTACTGAGGGGCAGAGCTAA
TCTTGCGGAGCTGGTCTCAGAGCTGGTTTCTGTGCCTCCCTGACTGAGCCTACCACCCGCAGGT
CTCCATGAAACTTTCCCTCACACCCACAGTGTCTGGCAGGCCATTCCCCTGCTGGGGCCTCGAG
CTGCTAAACATCTGCTTGCACGGTGGCCTTACCAGTCTGCCAGGGAGACAAGCAGACACCTTGA
TTCTGAAGTTGGTAGCCAAGCCTCAGGTAGAGCCCTGACATCAGGAGCTCTGCTTGCAAGTGTG
TGAGTCTGTGTGTGCCTGGACAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT
GTGTGTGTAGGGCAGGCTGTTCTAACCTGAAGATGCTGAGGAAGGAGCCTGTTGGTGATCCATT
GGGTGGATCAGGATGGACCTCCTCTGCGTTCCCAGGGCTCAGGACTACCCATGCCCTGACTTTG
CTGCCATCACTGGGCTCAACTCTCTGGGTTCATGTTACTAGTGCTCTGGGCCCAGTGACCATGC
ACCTTCACCCCAGGCAGGCCCTGTGTACCCCTCATCTATACTCCAGCATTTAATCTCGTGGCTG
CTTTCTTTTTATTTCCCACTTCCTCTGTTTCATAGCAGAACCTTCTGTTTAGGTTCTGGTGATC
AAGAAATATGTAATAAAACATAGCTGATATTGCA

hide sequence

RefSeq Acc Id:

XM_006236878 ⟹ XP_006236940

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	124,684,218 - 124,711,968 (+)	NCBI
mRatBN7.2	4	123,127,013 - 123,154,766 (+)	NCBI
Rnor_6.0	4	123,467,552 - 123,495,538 (-)	NCBI
Rnor_5.0	4	187,034,230 - 187,078,591 (+)	NCBI

Sequence:

show sequence

CCTGAGGAGATAAAGGAGTTTGGACTTGAGCATGAGACGGACGGACGATCTGTGAGAGGAGGAG
GCAAGCACTGGCCAGTGTTCAGAGATGTTAAAGACCTGCTGACGTTGGTGCCGCCCCTTGTTGG
TCTGAAGGGAAACCTGGAAATGACGCTGGCATCTCGACTCTCTACGTCTGCCAACACTGGGCAA
ATCGATGACCGCCAGGAGAGGTACAGAATCATCAGCAGCAACCTCGCTGTGGTTCAGGTGCAGG
CCACTGTTGTGGGGCTCCTGGCTGCAGTGGCCTCACTGATGCTGGGCACAGTGTCCCACGAGGA
GTTCGATTGGGCCAAGGTGGCCTTGCTGTGCACAAGCAGTGTCATCACCGCCTTCCTCGCTGCC
TTGGCCCTAGGAATTCTAATGATCTGCATAGTGATTGGTGCTCGGAAGTTTGGGGTGAACCCTG
ATAACATCGCCACACCCATTGCAGCCAGCCTGGGAGACCTCATCACGCTGTCTATCCTGGCCCT
GATGAGCAGCTTCTTCTACAGCCACAGAGACACGTGGTATCTGACGCCTCTGGTCTGCATTGGC
TTCTTGGCTCTCACCCCTCTGTGGATCTTCATTGCCAAGCAGAACCCACCCATCATGAAGATCC
TGAAGTATGGGTGGTTTCCCATTATCCTAGCCATGATCATCAGCAGTTTCGGAGGCCTCATCCT
GAGCAAAACCATTTCGAAACATCAGTTTAAAGGCATGGCTGTCCTGACTCCAGTTATATGTGGT
GTCGGTGGCAACCTGGTGGCCATTCAGACCAGCCGCATCTCCACCTTTCTGCATATGTGGAGCA
CACCTGGGGTCCTCCCTGTCCAGATGAAGAGATTCTGGCCTAACCCTTGCTTCACTTTCTGCTC
CTCAGAAATCAATTCTGTATCAGCACGAGTCCTGCTCTTTCTGGTGGTCCCAGGACACCTGATT
TTCTTCTACCTCATCTGCCTGGTGGAAGGCCAGTCAGTGACAAGCAGCAAGATCTTCGTGTTAC
TGTACCTGATGGCGGGCATGATGCAGGTGGTAATCCTGCTGTACCTAGCGGAAGTGATGGTTCG
ACTGACCTGGCACCAAGCCCTGGATCCTGACAACCACTGTATCCCCTACCTCACGGGCCTAGGG
GACCTGCTGGGCACTAGCCTGCTGGCACTGTGCTTCCTCCTGGACTGGTTACTGAGGGGCAGAG
CTAATCTTGCGGAGCTGGTCTCAGAGCTGGTTTCTGTGCCTCCCTGACTGAGCCTACCACCCGC
AGGTCTCCATGAAACTTTCCCTCACACCCACAGTGTCTGGCAGGCCATTCCCCTGCTGGGGCCT
CGAGCTGCTAAACATCTGCTTGCACGGTGGCCTTACCAGTCTGCCAGGGAGACAAGCAGACACC
TTGATTCTGAAGTTGGTAGCCAAGCCTCAGGTAGAGCCCTGACATCAGGAGCTCTGCTTGCAAG
TGTGTGAGTCTGTGTGTGCCTGGACAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT
GTGTGTGTGTGTAGGGCAGGCTGTTCTAACCTGAAGATGCTGAGGAAGGAGCCTGTTGGTGATC
CATTGGGTGGATCAGGATGGACCTCCTCTGCGTTCCCAGGGCTCAGGACTACCCATGCCCTGAC
TTTGCTGCCATCACTGGGCTCAACTCTCTGGGTTCATGTTACTAGTGCTCTGGGCCCAGTGACC
ATGCACCTTCACCCCAGGCAGGCCCTGTGTACCCCTCATCTATACTCCAGCATTTAATCTCGTG
GCTGCTTTCTTTTTATTTCCCACTTCCTCTGTTTCATAGCAGAACCTTCTGTTTAGGTTCTGGT
GATCAAGAAATATGTAATAAAACATAGCTGATATTGCA

hide sequence

RefSeq Acc Id:

XM_039108305 ⟹ XP_038964233

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	124,684,256 - 124,711,968 (+)	NCBI
mRatBN7.2	4	123,127,051 - 123,154,766 (+)	NCBI

RefSeq Acc Id:

XM_039108306 ⟹ XP_038964234

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	124,684,259 - 124,711,968 (+)	NCBI
mRatBN7.2	4	123,127,053 - 123,154,766 (+)	NCBI

RefSeq Acc Id:

XM_039108307 ⟹ XP_038964235

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	124,690,155 - 124,711,968 (+)	NCBI
mRatBN7.2	4	123,132,949 - 123,154,766 (+)	NCBI

RefSeq Acc Id:

XM_063286655 ⟹ XP_063142725

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	124,676,345 - 124,711,968 (+)	NCBI

RefSeq Acc Id:

XM_063286656 ⟹ XP_063142726

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	124,666,789 - 124,711,968 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001032569	(Get FASTA)	NCBI Sequence Viewer
	XP_006236933	(Get FASTA)	NCBI Sequence Viewer
	XP_006236934	(Get FASTA)	NCBI Sequence Viewer
	XP_006236936	(Get FASTA)	NCBI Sequence Viewer
	XP_006236939	(Get FASTA)	NCBI Sequence Viewer
	XP_006236940	(Get FASTA)	NCBI Sequence Viewer
	XP_038964233	(Get FASTA)	NCBI Sequence Viewer
	XP_038964234	(Get FASTA)	NCBI Sequence Viewer
	XP_038964235	(Get FASTA)	NCBI Sequence Viewer
	XP_063142725	(Get FASTA)	NCBI Sequence Viewer
	XP_063142726	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAI04699	(Get FASTA)	NCBI Sequence Viewer
	EDL91356	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000065688
	ENSRNOP00000065688.1
	ENSRNOP00000071826
	ENSRNOP00000087291
	ENSRNOP00000108387
GenBank Protein	Q3SWT5	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_001032569 ⟸ NM_001037492

- UniProtKB:

Q3SWT5 (UniProtKB/Swiss-Prot), A0A8I6A7H0 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MVVTQLSLEFRFQGKKLRGFSCELTRSPHGVLPESVLSTTCQVAIPILLSGLGMMTAGLVMNTV
QHWPVFRDVKDLLTLVPPLVGLKGNLEMTLASRLSTSANTGQIDDRQERYRIISSNLAVVQVQA
TVVGLLAAVASLMLGTVSHEEFDWAKVALLCTSSVITAFLAALALGILMICIVIGARKFGVNPD
NIATPIAASLGDLITLSILALMSSFFYSHRDTWYLTPLVCIGFLALTPLWIFIAKQNPPIMKIL
KYGWFPIILAMIISSFGGLILSKTISKHQFKGMAVLTPVICGVGGNLVAIQTSRISTFLHMWST
PGVLPVQMKRFWPNPCFTFCSSEINSVSARVLLFLVVPGHLIFFYLICLVEGQSVTSSKIFVLL
YLMAGMMQVVILLYLAEVMVRLTWHQALDPDNHCIPYLTGLGDLLGTSLLALCFLLDWLLRGRA
NLAELVSELVSVPP

hide sequence

RefSeq Acc Id:	XP_006236934 ⟸ XM_006236872
- Peptide Label:	isoform X1
- UniProtKB:	A0A0G2K1G1 (UniProtKB/TrEMBL), A6IB88 (UniProtKB/TrEMBL), A0A8I6A7H0 (UniProtKB/TrEMBL)
- Sequence:	show sequence MEGTEARQRRLEGCGRPKELGPPPSHNAGRLPEASEDGHPGISESQCVDAKSLEVQSSRETAMI IGFQVVIPFLLAGLGLSWAGLLLNYFQHWPVFRDVKDLLTLVPPLVGLKGNLEMTLASRLSTSA NTGQIDDRQERYRIISSNLAVVQVQATVVGLLAAVASLMLGTVSHEEFDWAKVALLCTSSVITA FLAALALGILMICIVIGARKFGVNPDNIATPIAASLGDLITLSILALMSSFFYSHRDTWYLTPL VCIGFLALTPLWIFIAKQNPPIMKILKYGWFPIILAMIISSFGGLILSKTISKHQFKGMAVLTP VICGVGGNLVAIQTSRISTFLHMWSTPGVLPVQMKRFWPNPCFTFCSSEINSVSARVLLFLVVP GHLIFFYLICLVEGQSVTSSKIFVLLYLMAGMMQVVILLYLAEVMVRLTWHQALDPDNHCIPYL TGLGDLLGTSLLALCFLLDWLLRGRANLAELVSELVSVPP hide sequence

RefSeq Acc Id:	XP_006236936 ⟸ XM_006236874
- Peptide Label:	isoform X2
- UniProtKB:	A0A8I6A7H0 (UniProtKB/TrEMBL)
- Sequence:	show sequence MEGTEARQRRLEGCGRPKELGPPPSHNAGRLPEASEDGHPGISESQCVDAKSLEVQSSRETAMI IGFQVVIPFLLAGLGLSWAGLLLNYFQHWPVFRDVKDLLTLVPPLVGLKGNLEMTLASRLSTSV QATVVGLLAAVASLMLGTVSHEEFDWAKVALLCTSSVITAFLAALALGILMICIVIGARKFGVN PDNIATPIAASLGDLITLSILALMSSFFYSHRDTWYLTPLVCIGFLALTPLWIFIAKQNPPIMK ILKYGWFPIILAMIISSFGGLILSKTISKHQFKGMAVLTPVICGVGGNLVAIQTSRISTFLHMW STPGVLPVQMKRFWPNPCFTFCSSEINSVSARVLLFLVVPGHLIFFYLICLVEGQSVTSSKIFV LLYLMAGMMQVVILLYLAEVMVRLTWHQALDPDNHCIPYLTGLGDLLGTSLLALCFLLDWLLRG RANLAELVSELVSVPP hide sequence

RefSeq Acc Id:	XP_006236933 ⟸ XM_006236871
- Peptide Label:	isoform X1
- UniProtKB:	A0A0G2K1G1 (UniProtKB/TrEMBL), A6IB88 (UniProtKB/TrEMBL), A0A8I6A7H0 (UniProtKB/TrEMBL)
- Sequence:	show sequence MEGTEARQRRLEGCGRPKELGPPPSHNAGRLPEASEDGHPGISESQCVDAKSLEVQSSRETAMI IGFQVVIPFLLAGLGLSWAGLLLNYFQHWPVFRDVKDLLTLVPPLVGLKGNLEMTLASRLSTSA NTGQIDDRQERYRIISSNLAVVQVQATVVGLLAAVASLMLGTVSHEEFDWAKVALLCTSSVITA FLAALALGILMICIVIGARKFGVNPDNIATPIAASLGDLITLSILALMSSFFYSHRDTWYLTPL VCIGFLALTPLWIFIAKQNPPIMKILKYGWFPIILAMIISSFGGLILSKTISKHQFKGMAVLTP VICGVGGNLVAIQTSRISTFLHMWSTPGVLPVQMKRFWPNPCFTFCSSEINSVSARVLLFLVVP GHLIFFYLICLVEGQSVTSSKIFVLLYLMAGMMQVVILLYLAEVMVRLTWHQALDPDNHCIPYL TGLGDLLGTSLLALCFLLDWLLRGRANLAELVSELVSVPP hide sequence

RefSeq Acc Id:

XP_006236940 ⟸ XM_006236878

- Peptide Label:

isoform X4

- Sequence:

show sequence

MTLASRLSTSANTGQIDDRQERYRIISSNLAVVQVQATVVGLLAAVASLMLGTVSHEEFDWAKV
ALLCTSSVITAFLAALALGILMICIVIGARKFGVNPDNIATPIAASLGDLITLSILALMSSFFY
SHRDTWYLTPLVCIGFLALTPLWIFIAKQNPPIMKILKYGWFPIILAMIISSFGGLILSKTISK
HQFKGMAVLTPVICGVGGNLVAIQTSRISTFLHMWSTPGVLPVQMKRFWPNPCFTFCSSEINSV
SARVLLFLVVPGHLIFFYLICLVEGQSVTSSKIFVLLYLMAGMMQVVILLYLAEVMVRLTWHQA
LDPDNHCIPYLTGLGDLLGTSLLALCFLLDWLLRGRANLAELVSELVSVPP

hide sequence

RefSeq Acc Id:

XP_006236939 ⟸ XM_006236877

- Peptide Label:

isoform X4

- Sequence:

show sequence

MTLASRLSTSANTGQIDDRQERYRIISSNLAVVQVQATVVGLLAAVASLMLGTVSHEEFDWAKV
ALLCTSSVITAFLAALALGILMICIVIGARKFGVNPDNIATPIAASLGDLITLSILALMSSFFY
SHRDTWYLTPLVCIGFLALTPLWIFIAKQNPPIMKILKYGWFPIILAMIISSFGGLILSKTISK
HQFKGMAVLTPVICGVGGNLVAIQTSRISTFLHMWSTPGVLPVQMKRFWPNPCFTFCSSEINSV
SARVLLFLVVPGHLIFFYLICLVEGQSVTSSKIFVLLYLMAGMMQVVILLYLAEVMVRLTWHQA
LDPDNHCIPYLTGLGDLLGTSLLALCFLLDWLLRGRANLAELVSELVSVPP

hide sequence

Ensembl Acc Id:

ENSRNOP00000071826 ⟸ ENSRNOT00000080734

Ensembl Acc Id:

ENSRNOP00000065688 ⟸ ENSRNOT00000073268

RefSeq Acc Id:	XP_038964233 ⟸ XM_039108305
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_038964234 ⟸ XM_039108306
- Peptide Label:	isoform X5

RefSeq Acc Id:	XP_038964235 ⟸ XM_039108307
- Peptide Label:	isoform X6

Ensembl Acc Id:

ENSRNOP00000087291 ⟸ ENSRNOT00000120080

RefSeq Acc Id:	XP_063142726 ⟸ XM_063286656
- Peptide Label:	isoform X2
- UniProtKB:	A0A8I6A7H0 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063142725 ⟸ XM_063286655
- Peptide Label:	isoform X1
- UniProtKB:	A0A0G2K1G1 (UniProtKB/TrEMBL), A6IB88 (UniProtKB/TrEMBL), A0A8I6A7H0 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000108387 ⟸ ENSRNOT00000146243

Protein Domains

SLC41A/MgtE integral membrane

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q3SWT5-F1-model_v2	AlphaFold	Q3SWT5	1-462	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13693257

Promoter ID:

EPDNEW_R3778

Type:

initiation region

Name:

Slc41a3_1

Description:

solute carrier family 41, member 3

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	4	123,510,216 - 123,510,276	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1589573	AgrOrtholog
BioCyc Gene	G2FUF-43730	BioCyc
Ensembl Genes	ENSRNOG00000045821	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000073268	ENTREZGENE
	ENSRNOT00000073268.2	UniProtKB/Swiss-Prot
	ENSRNOT00000080734	ENTREZGENE
	ENSRNOT00000120080	ENTREZGENE
	ENSRNOT00000146243	ENTREZGENE
Gene3D-CATH	1.10.357.20	UniProtKB/Swiss-Prot
IMAGE_CLONE	IMAGE:7134770	IMAGE-MGC_LOAD
InterPro	SLC41_membr_dom	UniProtKB/Swiss-Prot
	SLC41_membr_dom_sf	UniProtKB/Swiss-Prot
	SLC41A1-3	UniProtKB/Swiss-Prot
KEGG Report	rno:641603	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:124984	IMAGE-MGC_LOAD
NCBI Gene	641603	ENTREZGENE
PANTHER	PTHR16228	UniProtKB/Swiss-Prot
	SOLUTE CARRIER FAMILY 41 MEMBER 3	UniProtKB/Swiss-Prot
Pfam	MgtE	UniProtKB/Swiss-Prot
PhenoGen	Slc41a3	PhenoGen
RatGTEx	ENSRNOG00000045821	RatGTEx
Superfamily-SCOP	SSF161093	UniProtKB/Swiss-Prot
UniProt	A0A0G2K1G1	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6A7H0	ENTREZGENE, UniProtKB/TrEMBL
	A6IB88	ENTREZGENE, UniProtKB/TrEMBL
	Q3SWT5	ENTREZGENE, UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2006-11-19	Slc41a3	solute carrier family 41, member 3			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar