Zfp467 (zinc finger protein 467) - Rat Genome Database

Name: Zfp467
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

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Gene: Zfp467 (zinc finger protein 467) Rattus norvegicus

Analyze

Symbol:

Zfp467

Name:

zinc finger protein 467

RGD ID:

1561603

Description:

Predicted to have DNA-binding transcription activator activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in positive regulation of transcription by RNA polymerase II. Predicted to localize to nucleus. Orthologous to human ZNF467 (zinc finger protein 467); INTERACTS WITH (+)-schisandrin B; 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Also known as:

LOC500110; similar to zinc finger protein EZI; Znf467

RGD Orthologs

Human

Mouse

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	ZNF467 (zinc finger protein 467)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Zfp467 (zinc finger protein 467)	HGNC	Treefam, EggNOG, NCBI, OMA, HomoloGene, Inparanoid, Panther, PhylomeDB, OrthoDB, Ensembl
Chinchilla lanigera (long-tailed chinchilla):	Znf467 (zinc finger protein 467)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	ZNF467 (zinc finger protein 467)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	ZNF467 (zinc finger protein 467)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Znf467 (zinc finger protein 467)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	ZNF467 (zinc finger protein 467)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (African green monkey):	ZNF467 (zinc finger protein 467)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Znf467 (zinc finger protein 467)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	ZNF467 (zinc finger protein 467)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PhylomeDB\|TreeFam)
Mus musculus (house mouse):	Zfp467 (zinc finger protein 467)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|TreeFam)

Latest Assembly:

Rnor_6.0 - RGSC Genome Assembly v6.0

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	4	77,385,752 - 77,394,709 (-)	NCBI
Rnor_6.0 Ensembl	4	78,067,689 - 78,075,398 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_6.0	4	78,068,822 - 78,077,962 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	4	142,732,559 - 142,741,652 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	4	76,522,000 - 76,528,470 (-)	NCBI	RGSC3.4		rn4	RGSC3.4
Celera	4	72,323,491 - 72,329,961 (-)	NCBI		Celera
Cytogenetic Map	4	q24	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(+)-schisandrin B (EXP)

1,2-dimethylhydrazine (ISO)

17beta-estradiol (ISO)

2,2',4,4',5,5'-hexachlorobiphenyl (ISO)

2,2',5,5'-tetrachlorobiphenyl (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP)

2,3,7,8-Tetrachlorodibenzofuran (EXP)

2-amino-2-deoxy-D-glucopyranose (ISO)

3,3',5,5'-tetrabromobisphenol A (EXP)

3,4-methylenedioxymethamphetamine (ISO)

3-methylcholanthrene (ISO)

5-aza-2'-deoxycytidine (ISO)

acrylamide (EXP)

afimoxifene (ISO)

aldehydo-D-glucosamine (ISO)

all-trans-retinoic acid (EXP)

arsane (ISO)

arsenic atom (ISO)

atrazine (ISO)

benzo[a]pyrene (ISO)

Benzo[k]fluoranthene (ISO)

beta-D-glucosamine (ISO)

cadmium atom (ISO)

carbon nanotube (ISO)

cisplatin (ISO)

clothianidin (ISO)

coumestrol (ISO)

crocidolite asbestos (ISO)

cyclosporin A (ISO)

cytarabine (ISO)

dibutyl phthalate (ISO)

dioxygen (ISO)

dorsomorphin (ISO)

endosulfan (EXP)

Enterolactone (ISO)

entinostat (ISO)

folic acid (ISO)

furan (EXP,ISO)

geraniol (ISO)

glafenine (EXP)

methylmercury chloride (ISO)

N-methylformamide (ISO)

paracetamol (ISO)

PCB138 (ISO)

phenobarbital (ISO)

pirinixic acid (ISO)

pregnenolone 16alpha-carbonitrile (ISO)

propiconazole (ISO)

protein kinase inhibitor (ISO)

resveratrol (ISO)

SB 431542 (ISO)

silicon dioxide (ISO)

silver atom (ISO)

silver(0) (ISO)

sodium arsenate (ISO)

Soman (EXP)

tamoxifen (ISO)

tetrachloromethane (EXP,ISO)

thapsigargin (ISO)

triphenyl phosphate (EXP)

tunicamycin (ISO)

valproic acid (ISO)

vorinostat (ISO)

zoledronic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

positive regulation of transcription by RNA polymerase II (ISO)

regulation of transcription by RNA polymerase II (IBA)

regulation of transcription, DNA-templated (ISO)

Cellular Component

nucleus (IBA,ISO)

Molecular Function

DNA binding (ISO)

DNA-binding transcription activator activity, RNA polymerase II-specific (IBA,ISO)

metal ion binding (IEA)

protein binding (ISO)

RNA polymerase II cis-regulatory region sequence-specific DNA binding (IBA,ISO)

References

References - curated


1.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	RGD automated data pipeline
3.	RGD automated import pipeline for gene-chemical interactions
4.	Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.

Additional References at PubMed

PMID:12426389	PMID:15489334

Genomics

Comparative Map Data

Zfp467
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	4	77,385,752 - 77,394,709 (-)	NCBI
Rnor_6.0 Ensembl	4	78,067,689 - 78,075,398 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_6.0	4	78,068,822 - 78,077,962 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	4	142,732,559 - 142,741,652 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	4	76,522,000 - 76,528,470 (-)	NCBI	RGSC3.4		rn4	RGSC3.4
Celera	4	72,323,491 - 72,329,961 (-)	NCBI		Celera
Cytogenetic Map	4	q24	NCBI

ZNF467
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38.p13 Ensembl	7	149,764,182 - 149,773,588 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh38	7	149,764,182 - 149,776,323 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh37	7	149,461,271 - 149,470,677 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
GRCh37	7	149,461,452 - 149,470,295 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	7	149,092,385 - 149,101,228 (-)	NCBI	NCBI36		hg18	NCBI36
Build 34	7	148,899,099 - 148,907,943	NCBI
Celera	7	144,130,665 - 144,139,508 (-)	NCBI
Cytogenetic Map	7	q36.1	NCBI
HuRef	7	143,537,596 - 143,546,157 (-)	NCBI		HuRef
CHM1_1	7	149,470,029 - 149,478,877 (-)	NCBI		CHM1_1
CRA_TCAGchr7v2	7	148,799,466 - 148,808,309 (-)	NCBI

Zfp467
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	6	48,404,626 - 48,422,926 (-)	NCBI	GRCm39		mm39
GRCm38	6	48,427,692 - 48,445,992 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	6	48,427,697 - 48,445,825 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	6	48,377,691 - 48,395,824 (-)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	6	48,367,172 - 48,375,193 (-)	NCBI			mm8
Celera	6	48,931,752 - 48,949,878 (-)	NCBI		Celera
Cytogenetic Map	6	B2.3	NCBI

Znf467
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955491	4,830,708 - 4,838,316 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955491	4,830,708 - 4,838,316 (-)	NCBI	ChiLan1.0	ChiLan1.0

ZNF467
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	7	153,941,109 - 153,948,017 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	7	153,941,302 - 153,948,017 (-)	Ensembl	panpan1.1		panPan2
Mhudiblu_PPA_v0	7	141,467,591 - 141,477,027 (-)	NCBI	Mhudiblu_PPA_v0		panPan3

ZNF467
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1 Ensembl	16	14,536,854 - 14,544,694 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
CanFam3.1	16	14,526,314 - 14,544,694 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1

Znf467
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
SpeTri2.0	NW_004936527	5,813,384 - 5,819,581 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ZNF467
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	18	55,775,264 - 55,783,421 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	18	55,774,875 - 55,783,562 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	18	61,101,603 - 61,110,759 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

ZNF467
(Chlorocebus sabaeus - African green monkey)

Vervet Assembly	Chr	Position (strand)	Source	Genome Browsers
Vervet Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	21	118,330,429 - 118,339,588 (-)	NCBI
ChlSab1.1 Ensembl	21	118,330,789 - 118,337,079 (-)	Ensembl

Znf467
(Heterocephalus glaber - naked mole-rat)

Molerat Assembly	Chr	Position (strand)	Source	Genome Browsers
Molerat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624800	6,245,569 - 6,253,054 (+)	NCBI

Position Markers

RH132078

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Rnor_6.0	4	78,069,059 - 78,069,238	NCBI	Rnor6.0
Rnor_5.0	4	142,732,612 - 142,732,791	UniSTS	Rnor5.0
RGSC_v3.4	4	76,522,048 - 76,522,227	UniSTS	RGSC3.4
Celera	4	72,323,539 - 72,323,718	UniSTS
RH 3.4 Map	4	512.03	UniSTS
Cytogenetic Map	4	q24	UniSTS

QTLs in Region (Rnor_6.0)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
619616	Bp79	Blood pressure QTL 79		0.0292	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	4	3043231	79575658	Rat
2303168	Bp330	Blood pressure QTL 330	4.25	0.017	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	4	3043231	145254791	Rat
631261	Tcas3	Tongue tumor susceptibility QTL 3	6.88		tongue integrity trait (VT:0010553)	number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)	4	7342404	92484039	Rat
2316958	Gluco58	Glucose level QTL 58	10		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	4	7850904	182171018	Rat
10755501	Bp390	Blood pressure QTL 390	2.5		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	4	23850384	169318094	Rat
8655906	Rf60	Renal function QTL 60	3.8		blood creatinine amount (VT:0005328)	creatinine clearance (CMO:0000765)	4	26654749	81874227	Rat
12798520	Anxrr55	Anxiety related response QTL 55	4.45	0.01	locomotor behavior trait (VT:0001392)	number of rearing movements with lid-pushing in an experimental apparatus (CMO:0002715)	4	29549895	112807890	Rat
8552782	Vie1	Viral induced encephalitis QTL 1	26.4		brain integrity trait (VT:0010579)	encephalitis incidence/prevalence measurement (CMO:0002361)	4	31825560	83531021	Rat
8552801	Bw143	Body weight QTL 143	7.3		body mass (VT:0001259)	change in body weight to body weight ratio (CMO:0002216)	4	31825560	83531021	Rat
8552809	Vie5	Viral induced encephalitis QTL 5	25.3		brain integrity trait (VT:0010579)	encephalitis incidence/prevalence measurement (CMO:0002361)	4	31825560	83531021	Rat
8655961	Kidm43	Kidney mass QTL 43	18		kidney mass (VT:0002707)	both kidneys wet weight (CMO:0000085)	4	34277932	99067150	Rat
1358352	Srcrt3	Stress Responsive Cort QTL 3	2.29		blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	4	36615599	145611886	Rat
1300139	Hrtrt6	Heart rate QTL 6	2.85		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	4	37703272	115372927	Rat
61445	Strs3	Sensitivity to stroke QTL 3	3		cerebrum integrity trait (VT:0010549)	post-insult time to onset of cerebrovascular lesion (CMO:0002343)	4	39208222	84208222	Rat
8694439	Bw168	Body weight QTL 168	9.57	0.001	retroperitoneal fat pad mass (VT:0010430)	retroperitoneal fat pad weight to body weight ratio (CMO:0000635)	4	39208247	84208247	Rat
6893678	Bw108	Body weight QTL 108	2.6	0.006	body mass (VT:0001259)	body weight (CMO:0000012)	4	42415777	87415777	Rat
1576305	Emca6	Estrogen-induced mammary cancer QTL 6	5.8		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	4	43414605	155469929	Rat
1354660	Salc1	Saline consumption QTL 1	11.26		drinking behavior trait (VT:0001422)	saline drink intake rate (CMO:0001627)	4	43414792	146942075	Rat
1354612	Foco1	Food consumption QTL 1	8.87		eating behavior trait (VT:0001431)	food intake rate (CMO:0000427)	4	43414792	146942075	Rat
1298082	Stresp4	Stress response QTL 4			blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	4	46898276	145611886	Rat
2312567	Glom19	Glomerulus QTL 19	1.9	0.006	kidney glomerulus morphology trait (VT:0005325)	index of glomerular damage (CMO:0001135)	4	49906054	145611886	Rat
4889969	Bss96	Bone structure and strength QTL 96	4.9		tibia size trait (VT:0100001)	tibia cortical bone volume (CMO:0001725)	4	55324857	79575658	Rat
4889972	Bss97	Bone structure and strength QTL 97	5.6		tibia size trait (VT:0100001)	tibia total bone volume (CMO:0001724)	4	55324857	79575658	Rat
5685009	Bmd86	Bone mineral density QTL 86	3.7		tibia mineral mass (VT:1000283)	bone mineral density (CMO:0001226)	4	55324857	79575658	Rat
5685012	Bmd87	Bone mineral density QTL 87	5.1		tibia mineral mass (VT:1000283)	bone mineral content (CMO:0001554)	4	55324857	79575658	Rat
70200	Alc18	Alcohol consumption QTL 18	9.2		drinking behavior trait (VT:0001422)	ethanol intake volume to total fluid intake volume ratio (CMO:0001591)	4	55324953	148360954	Rat
1641833	Alc21	Alcohol consumption QTL 21	8.6	0.0001	drinking behavior trait (VT:0001422)	ethanol drink intake rate (CMO:0001407)	4	55375865	125671711	Rat
634311	Sach7	Saccharin preference QTL 7			taste sensitivity trait (VT:0001986)	saccharin intake volume to total fluid intake volume ratio (CMO:0001601)	4	55791564	82134846	Rat
631546	Bp86	Blood pressure QTL 86	3.2		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	4	55791564	92484312	Rat
61336	Bp21	Blood pressure QTL 21	4.6		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	4	55791834	79557856	Rat
1578657	Bss12	Bone structure and strength QTL 12	8.9		femur morphology trait (VT:0000559)	femoral neck cross-sectional area (CMO:0001697)	4	56092756	101092756	Rat
1578658	Bss13	Bone structure and strength QTL 13	8		femur strength trait (VT:0010010)	femoral neck polar moment of inertia (CMO:0001670)	4	56092756	101092756	Rat
1558651	Swd3	Spike wave discharge measurement QTL 3	4.62	0.000024	brain electrophysiology trait (VT:0010557)	brain spike-and-wave discharge frequency (CMO:0001742)	4	57101077	92990863	Rat
631671	Iddm11	Insulin dependent diabetes mellitus QTL 11	3.6	0.0012	blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	4	57307075	79578854	Rat
1358363	Sradr3	Stress Responsive Adrenal Weight QTL 3	6.19		adrenal gland mass (VT:0010420)	both adrenal glands wet weight (CMO:0000164)	4	58166424	103166424	Rat
738009	Sach4	Saccharine consumption QTL 4	4.9	0.000016	consumption behavior trait (VT:0002069)	saccharin intake volume to total fluid intake volume ratio (CMO:0001601)	4	58640017	154427984	Rat
738016	Alc16	Alcohol consumption QTL 16	3.6	0.00015	consumption behavior trait (VT:0002069)	ethanol drink intake rate to body weight ratio (CMO:0001616)	4	58640017	154427984	Rat
738031	Alc14	Alcohol consumption QTL 14	7.6	0.00003	consumption behavior trait (VT:0002069)	ethanol drink intake rate to body weight ratio (CMO:0001616)	4	58640017	154427984	Rat
1549843	Bw53	Body weight QTL 53		0.0001	body mass (VT:0001259)	body weight gain (CMO:0000420)	4	60439127	99066957	Rat
1549839	Bw52	Body weight QTL 52		0.0001	body mass (VT:0001259)	body weight gain (CMO:0000420)	4	60439127	113416139	Rat
61418	Pia5	Pristane induced arthritis QTL 5	4.5		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	4	61038901	127777403	Rat
7394826	Bw126	Body weight QTL 126		0.002	body mass (VT:0001259)	body weight gain (CMO:0000420)	4	61708103	88565113	Rat
8552807	Vie4	Viral induced encephalitis QTL 4	7.3		brain integrity trait (VT:0010579)	encephalitis incidence/prevalence measurement (CMO:0002361)	4	61708341	83531021	Rat
70192	BpQTLcluster5	Blood pressure QTL cluster 5	4.183		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	4	61708341	113100992	Rat
70192	BpQTLcluster5	Blood pressure QTL cluster 5	4.183		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	4	61708341	113100992	Rat
70192	BpQTLcluster5	Blood pressure QTL cluster 5	4.183		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	4	61708341	113100992	Rat
70192	BpQTLcluster5	Blood pressure QTL cluster 5	4.183		arterial blood pressure trait (VT:2000000)	percent change in mean arterial blood pressure (CMO:0002035)	4	61708341	113100992	Rat
70192	BpQTLcluster5	Blood pressure QTL cluster 5	4.183		arterial blood pressure trait (VT:2000000)	percent change in systolic blood pressure (CMO:0000747)	4	61708341	113100992	Rat
70192	BpQTLcluster5	Blood pressure QTL cluster 5	4.183		arterial blood pressure trait (VT:2000000)	absolute change in pulse pressure (CMO:0001882)	4	61708341	113100992	Rat
70192	BpQTLcluster5	Blood pressure QTL cluster 5	4.183		arterial blood pressure trait (VT:2000000)	absolute change in mean arterial blood pressure (CMO:0000533)	4	61708341	113100992	Rat
2300179	Bmd50	Bone mineral density QTL 50	5.9	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	4	61975371	106975371	Rat
1641919	Alc22	Alcohol consumption QTL 22		0.0005	drinking behavior trait (VT:0001422)	ethanol drink intake rate (CMO:0001407)	4	62947687	125671711	Rat
631674	Iddm14	Insulin dependent diabetes mellitus QTL 14			blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	4	63537179	157286626	Rat
6478684	Anxrr30	Anxiety related response QTL 30		0.00087	defecation behavior trait (VT:0010462)	defecation rate (CMO:0000998)	4	63812687	108812687	Rat
6478743	Anxrr40	Anxiety related response QTL 40		0.83076	defecation behavior trait (VT:0010462)	defecation rate (CMO:0000998)	4	63812687	108812687	Rat
6478772	Anxrr49	Anxiety related response QTL 49		0.15488	defecation behavior trait (VT:0010462)	defecation rate (CMO:0000998)	4	63812687	108812687	Rat
631651	Bp124	Blood pressure QTL 124	3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	4	63938412	108938412	Rat
2312569	Pur19	Proteinuria QTL 19	3.4	0.001	total urine protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	4	65989243	97759057	Rat
61330	Eau1	Experimental allergic uveoretinitis QTL 1		0.0003	uvea integrity trait (VT:0010551)	experimental autoimmune uveitis score (CMO:0001504)	4	70773471	132455556	Rat
634344	Hcar7	Hepatocarcinoma resistance QTL 7	7.8		liver integrity trait (VT:0010547)	liver tumorous lesion area to total liver area ratio (CMO:0001075)	4	71476518	116476518	Rat
634344	Hcar7	Hepatocarcinoma resistance QTL 7	7.8		liver integrity trait (VT:0010547)	liver tumorous lesion number (CMO:0001068)	4	71476518	116476518	Rat
631646	Stl4	Serum triglyceride level QTL 4	6.5	0.0001	blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	4	73786419	132455556	Rat
724522	Bp146	Blood pressure QTL 146	2.2	0.0021	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	4	75258970	120258970	Rat
2302051	Pia28	Pristane induced arthritis QTL 28	5.3	0.001	blood autoantibody amount (VT:0003725)	serum immunoglobulin G-type rheumatoid factor level relative to an arbitrary reference serum (CMO:0002112)	4	75258970	120258970	Rat
738015	Pia9	Pristane induced arthritis QTL 9	4.5	0.048	joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	4	76567036	121567036	Rat
70167	Bw22	Body weight QTL 22	3.1		body mass (VT:0001259)	body weight (CMO:0000012)	4	77307388	116916073	Rat
1357342	Bw40	Body weight QTL 40		0.001	body mass (VT:0001259)	body weight (CMO:0000012)	4	77307388	116916073	Rat
2306545	Iddm39	Insulin dependent diabetes mellitus QTL 39			blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	4	78039977	78371222	Rat

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	506
Count of miRNA genes:	262
Interacting mature miRNAs:	315
Transcripts:	ENSRNOT00000010377
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium		4	5	5	2	5			53	27	28	3
Low	3	39	52	36	17	36	8	11	21	8	10	8	8
Below cutoff											3

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001024327	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006236431	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006236432	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006236433	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006236434	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017592790	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC123494	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC086534	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474011	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JACYVU010000142	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSRNOT00000010377 ⟹ ENSRNOP00000010377

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	4	78,069,978 - 78,075,398 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000080654 ⟹ ENSRNOP00000073578

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	4	78,067,689 - 78,074,906 (-)	Ensembl

RefSeq Acc Id:

NM_001024327 ⟹ NP_001019498

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	4	77,385,757 - 77,392,229 (-)	NCBI
Rnor_6.0	4	78,069,011 - 78,075,481 (-)	NCBI
Rnor_5.0	4	142,732,559 - 142,741,652 (-)	NCBI
RGSC_v3.4	4	76,522,000 - 76,528,470 (-)	RGD
Celera	4	72,323,491 - 72,329,961 (-)	RGD

Sequence:

show sequence

GATAGCTGAGAGGAAGAATCTGAACAGGGCTATCTTTTTAGGGTCTGTGGCCTGATCACCTAGG
AGAGCCACTCCTGGTGGCCATGAGAGAGACCCTGGAGGCCCTGAACTCTTTGGGATTCTCAGTG
GGACAGCCAGAGATGGCACCCCAAAGTGAGCCCAGGGATGGGTTCAGTAATCCCCAGGAGAAGA
TGTCATCTAGAGATGAGAGCACACTGCACTCATGCTCAGGGCCTGAGACCCCTGGCCAGAAAGA
AGGTATCCACACAGAACAAGCTGAAGCTCCTTGTATGGGCAGCCAGGCCTGTATCCCACAGAAG
GCCGAGCCTGCAAGCTCTGTCCCAGGGGAGGAATGGATGATTCGGAAAGTGAAGGTAGAGGATG
AGGACCAGGAGGCAGAGGAGGAGGTGGAATGGCCCCAGCATCTCTCCTTCCTTCCCAGTCCTTT
TCCTACTCCTGACTTGGGTCAGTTGGCTGTTGCATACAAACTGGAGCCAGGGACTCCGGGGACA
CTAGGTGGAATCGCGCTGTCCGGGTGGGCGCCGATCCCTGAAAAGCCTTATGGCTGCGAGGAAT
GCGAGCGGCGATTCCGGGACCAGCTAACTCTGCGGCTGCATCAGAGGTTGCACCGGGGTGAGGG
TCCTTGTGCCTGCCCGGACTGTGGCCGCAGCTTCACGCAGCGTGCTCATATGCTTCTGCACCAA
CGCAGCCACCGCGGAGAGCGTCCCTTCCCGTGCTCAGAGTGCGATAAGCGTTTCAGCAAGAAAG
CCCACCTGACCCGTCACCTGCGCACTCACACTGGCGAGCGTCCCTACCCGTGCGCCGAATGCGG
CAAACGCTTCAGCCAGAAGATTCACCTAGGCTCGCACCAGAAGACCCACACTGGCGAGCGGCCC
TTCCCCTGCACGGAATGCGAGAAGCGTTTCCGCAAGAAGACGCACCTGATCCGCCACCAGCGTA
TCCACACAGGTGAGAGGCCCTACCAGTGCACCCAGTGTACACGCAGCTTCACCCACAAGCAACA
TCTGGTGAGGCACCAGAGGGTGCACGATGCTGCTAGCCGCACCCGGTCCTCTCCCGACATTCCT
GCTACTCCCCATCCCCCGACCGCGTCTCTTGCCCCATCCCCTACTGGGCCCAAGCCTTTCGCCT
GCTCCCATTGCGGGCAGAGCTTTGGCTGGAAAAAGAACCTCGCTACGCATCAGAGTCTGCACCT
CACCGAGGGTCGTCCTTTTGGGTGCGATGAATGTGCACTCGGCACCAACGTGGACCCCGCTGCC
GAGCCCTCCGCCTGCACTCCCCATGCGCCTGACTGTGGCCCGGGTTCGGGGCCCGTGGCACCCC
AGCGCACGACCTCTAGCGAGCGCTCCTTCTTCTGCCCCGACTGCGGGCGCGGCTTCGCCCACGG
GCAGCACCTGGCCCGGCACCGGCGCGTGCACACGGGTGAAAGGCCATTTGCCTGTGCTCAGTGT
GGCCGCCGCTTCGGCTCACGACCCAATCTAGTCGCCCACTCCCGGGCTCACAGCGGCGCCAGAC
CTTTTGCCTGTGCACAGTGTGGCCGCCGCTTCAGTCGGAAATCTCACCTGGGCCGCCACCAGGC
AGTGCACACTGGCAGCCGCCCCCACGCTTGCGCCGTCTGCGCCCGCTGCTTCAGCTCCAAAACC
AACCTGGTCCGCCACCAGGCGATCCATACGGGCTCCCGTCCCTTTTCCTGCCCTCAGTGCGCCA
AGAGCTTCAGCCGCAAGACCCACCTGGTGCGGCACCAACGCATCCATGGAGAAGCGGCCCTCCC
AGCCTCAGCCTCAAACCTCTCTGCTCCAGCCTGGTCCAATCCCTCCGAGGTGGTACCGCCTCCA
ATCTTCTTCTAAGCCGAATTCTGACCCGCACCCTGCCTTTCCCGACAGATTTGGGAGACTAAGT
GGGTTTTCAATATTCACACCTAGGTTGCTGCCAAAGCACCAGGACACTTGAGTCTTTGTCCTTT
CTTGAATGTTAGTTAAGAAGTCCGAAAAACATACTTAGCTCTTGACAGTTACGACAAAGAACAC
AGAGAGACTACCCTTGCAGATACCACACTGAGAACCAGACATTTCTGGGGATCAACCAGGTCAA
GGGGAGACTGACTGAGCAGGAAACCTCTAAATAGAAGGAAAGAATAGTTATTTATGTACTTGAA
GGTCATTAACGTTCAGATCTGAAGTCCTGGGGCTGTTCACTGAGCCAGGGGAGGAAAGCCTGAC
TCTTGTACTCACTGCCACCTCCAACCACAGGAAAAGACCTTTCCTGTCAGTTCAGGGAAGTAAA
CCTAGCTAGCTGGTTCTTCCCAACCAAAGTGTATTATTCACAGATGCCAAACAACTACCATGGT
TCCGTGCGCGCTCGTGTGTCTGTGTCACACAAGTTTGGCTTGGAGGGGGAGGTGAGGACCAAAG
GACCAAAGGCTGCTCCCAGGGGCCCAGCATTATTACTGTAGGTGCTGCAGCTCCATACCACCTG
TTTGCAGCCCTTTGAGAGGCTTCCCAGAAGCATCCTTACGTGCACCTGCCTAGGAGGTAAAGAG
GAGGCAGTGCTTGAACAGGCCATTAAAAGTTGTTTCTATGTTGCCTTTTCGACCAGTTGTCTCC
TTGTGAGGAGTGCTGGAGCCTGAAGACACTACAACTGTACACCCACCTGGGCTGACAGCAGCAG
AGGGGCTGCCTGACGAGAGGGAGCAGTGGGGGGATGGGGTCTGAGTTTAGAGAGAACTATTTTG
GATTCGACCTCTTAGAGAACTTGGAGGGAAGCCTTTACTCTCCTGGAACTTCAATTTCTCATTA
AAACGAGAGCTGGTGTTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006236431 ⟹ XP_006236493

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	4	77,385,752 - 77,393,593 (-)	NCBI
Rnor_6.0	4	78,068,822 - 78,076,916 (-)	NCBI
Rnor_5.0	4	142,732,559 - 142,741,652 (-)	NCBI

Sequence:

show sequence

CTAGAGCTGGGCAAGGGGCCGGGACCCGGAGTGACTCCGGAGCGCTAACAGGGGCGGGGATTGG
GGGGAATCTAGTCAGAAGGAAAACTCCGGAGAGGGCGTGAAGTCAGTGGGGAGCAGAAATGGGG
TCTGTGGCCTGATCACCTAGGAGAGCCACTCCTGGTGGCCATGAGAGAGACCCTGGAGGCCCTG
AACTCTTTGGGATTCTCAGTGGGACAGCCAGAGATGGCACCCCAAAGTGAGCCCAGGGATGGGT
TCAGTAATCCCCAGGAGAAGATGTCATCTAGAGATGAGAGCACACTGCACTCATGCTCAGGGCC
TGAGACCCCTGGCCAGAAAGAAGGTATCCACACAGAACAAGCTGAAGCTCCTTGTATGGGCAGC
CAGGCCTGTATCCCACAGAAGGCCGAGCCTGCAAGCTCTGTCCCAGGGGAGGAATGGATGATTC
GGAAAGTGAAGGTAGAGGATGAGGACCAGGAGGCAGAGGAGGAGGTGGAATGGCCCCAGCATCT
CTCCTTCCTTCCCAGTCCTTTTCCTACTCCTGACTTGGGTCAGTTGGCTGTTGCATACAAACTG
GAGCCAGGGACTCCGGGGACACTAGGTGGAATCGCGCTGTCCGGGTGGGCGCCGATCCCTGAAA
AGCCTTATGGCTGCGAGGAATGCGAGCGGCGATTCCGGGACCAGCTAACTCTGCGGCTGCATCA
GAGGTTGCACCGGGGTGAGGGTCCTTGTGCCTGCCCGGACTGTGGCCGCAGCTTCACGCAGCGT
GCTCATATGCTTCTGCACCAACGCAGCCACCGCGGAGAGCGTCCCTTCCCGTGCTCAGAGTGCG
ATAAGCGTTTCAGCAAGAAAGCCCACCTGACCCGTCACCTGCGCACTCACACTGGCGAGCGTCC
CTACCCGTGCGCCGAATGCGGCAAACGCTTCAGCCAGAAGATTCACCTAGGCTCGCACCAGAAG
ACCCACACTGGCGAGCGGCCCTTCCCCTGCACGGAATGCGAGAAGCGTTTCCGCAAGAAGACGC
ACCTGATCCGCCACCAGCGTATCCACACAGGTGAGAGGCCCTACCAGTGCACCCAGTGTACACG
CAGCTTCACCCACAAGCAACATCTGGTGAGGCACCAGAGGGTGCACGATGCTGCTAGCCGCACC
CGGTCCTCTCCCGACATTCCTGCTACTCCCCATCCCCCGACCGCGTCTCTTGCCCCATCCCCTA
CTGGGCCCAAGCCTTTCGCCTGCTCCCATTGCGGGCAGAGCTTTGGCTGGAAAAAGAACCTCGC
TACGCATCAGAGTCTGCACCTCACCGAGGGTCGTCCTTTTGGGTGCGATGAATGTGCACTCGGC
ACCAACGTGGACCCCGCTGCCGAGCCCTCCGCCTGCACTCCCCATGCGCCTGACTGTGGCCCGG
GTTCGGGGCCCGTGGCACCCCAGCGCACGACCTCTAGCGAGCGCTCCTTCTTCTGCCCCGACTG
CGGGCGCGGCTTCGCCCACGGGCAGCACCTGGCCCGGCACCGGCGCGTGCACACGGGTGAAAGG
CCATTTGCCTGTGCTCAGTGTGGCCGCCGCTTCGGCTCACGACCCAATCTAGTCGCCCACTCCC
GGGCTCACAGCGGCGCCAGACCTTTTGCCTGTGCACAGTGTGGCCGCCGCTTCAGTCGGAAATC
TCACCTGGGCCGCCACCAGGCAGTGCACACTGGCAGCCGCCCCCACGCTTGCGCCGTCTGCGCC
CGCTGCTTCAGCTCCAAAACCAACCTGGTCCGCCACCAGGCGATCCATACGGGCTCCCGTCCCT
TTTCCTGCCCTCAGTGCGCCAAGAGCTTCAGCCGCAAGACCCACCTGGTGCGGCACCAACGCAT
CCATGGAGAAGCGGCCCTCCCAGCCTCAGCCTCAAACCTCTCTGCTCCAGCCTGGTCCAATCCC
TCCGAGGTGGTACCGCCTCCAATCTTCTTCTAAGCCGAATTCTGACCCGCACCCTGCCTTTCCC
GACAGATTTGGGAGACTAAGTGGGTTTTCAATATTCACACCTAGGTTGCTGCCAAAGCACCAGG
ACACTTGAGTCTTTGTCCTTTCTTGAATGTTAGTTAAGAAGTCCGAAAAACATACTTAGCTCTT
GACAGTTACGACAAAGAACACAGAGAGACTACCCTTGCAGATACCACACTGAGAACCAGACATT
TCTGGGGATCAACCAGGTCAAGGGGAGACTGACTGAGCAGGAAACCTCTAAATAGAAGGAAAGA
ATAGTTATTTATGTACTTGAAGGTCATTAACGTTCAGATCTGAAGTCCTGGGGCTGTTCACTGA
GCCAGGGGAGGAAAGCCTGACTCTTGTACTCACTGCCACCTCCAACCACAGGAAAAGACCTTTC
CTGTCAGTTCAGGGAAGTAAACCTAGCTAGCTGGTTCTTCCCAACCAAAGTGTATTATTCACAG
ATGCCAAACAACTACCATGGTTCCGTGCGCGCTCGTGTGTCTGTGTCACACAAGTTTGGCTTGG
AGGGGGAGGTGAGGACCAAAGGACCAAAGGCTGCTCCCAGGGGCCCAGCATTATTACTGTAGGT
GCTGCAGCTCCATACCACCTGTTTGCAGCCCTTTGAGAGGCTTCCCAGAAGCATCCTTACGTGC
ACCTGCCTAGGAGGTAAAGAGGAGGCAGTGCTTGAACAGGCCATTAAAAGTTGTTTCTATGTTG
CCTTTTCGACCAGTTGTCTCCTTGTGAGGAGTGCTGGAGCCTGAAGACACTACAACTGTACACC
CACCTGGGCTGACAGCAGCAGAGGGGCTGCCTGACGAGAGGGAGCAGTGGGGGGATGGGGTCTG
AGTTTAGAGAGAACTATTTTGGATTCGACCTCTTAGAGAACTTGGAGGGAAGCCTTTACTCTCC
TGGAACTTCAATTTCTCATTAAAACGAGAGCTGGTGTTGATGAAAGCGGAGACTCCTTTCTATC
CTATTACTAGATTACTAACTACAAAAATACCCAAGGCAACCGTCTCCTGGGTGCTAAGCACTGG
GAAAGGTCAGGAGCCAGCTAGCAAGGATCCTTCCATCACAGCTTAAGTGGGTTTCCTGGTTTGT
GCTTACTGTTGCTGTGATTAAATGCTGACCTTGAGCA

hide sequence

RefSeq Acc Id:

XM_006236432 ⟹ XP_006236494

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	4	77,385,752 - 77,393,810 (-)	NCBI
Rnor_6.0	4	78,068,822 - 78,077,300 (-)	NCBI
Rnor_5.0	4	142,732,559 - 142,741,652 (-)	NCBI

Sequence:

show sequence

ACACCGAGGCTCCGGAGCAGGCATCTCCGCCCGCCACCCAAACGGAGCTTTACAAGCCCTGCCG
GCTCACGGCAGGTGACAACCCCGAGGGAAGGGGCGCGCAGACGCGAGTGTGGGGGAGGGGCGGG
GGTCAGAAGAGGGAGGGAAGGGAGTCAGGAGGGAGGGTCCAGGCGCAGAGGGGGAGACTAGGAA
ACTGGAGGGGATGGCAAGGACTAGAAGAGGCCCGGTGGGAGCAGGTGGGAAGAGGGCAGGAGGG
GCCTGCGGGGAGGATCCCAAGGAGCGGGAGTAGGGTTCCTCGGGATAGGGGAAGGGTCCAGCGC
GAAGGGGCAGGAAACGGGCTCAGGGATGGGACTGGTCGGGAGCGAAGGACGCTGACAGGGTCTG
TGGCCTGATCACCTAGGAGAGCCACTCCTGGTGGCCATGAGAGAGACCCTGGAGGCCCTGAACT
CTTTGGGATTCTCAGTGGGACAGCCAGAGATGGCACCCCAAAGTGAGCCCAGGGATGGGTTCAG
TAATCCCCAGGAGAAGATGTCATCTAGAGATGAGAGCACACTGCACTCATGCTCAGGGCCTGAG
ACCCCTGGCCAGAAAGAAGGTATCCACACAGAACAAGCTGAAGCTCCTTGTATGGGCAGCCAGG
CCTGTATCCCACAGAAGGCCGAGCCTGCAAGCTCTGTCCCAGGGGAGGAATGGATGATTCGGAA
AGTGAAGGTAGAGGATGAGGACCAGGAGGCAGAGGAGGAGGTGGAATGGCCCCAGCATCTCTCC
TTCCTTCCCAGTCCTTTTCCTACTCCTGACTTGGGTCAGTTGGCTGTTGCATACAAACTGGAGC
CAGGGACTCCGGGGACACTAGGTGGAATCGCGCTGTCCGGGTGGGCGCCGATCCCTGAAAAGCC
TTATGGCTGCGAGGAATGCGAGCGGCGATTCCGGGACCAGCTAACTCTGCGGCTGCATCAGAGG
TTGCACCGGGGTGAGGGTCCTTGTGCCTGCCCGGACTGTGGCCGCAGCTTCACGCAGCGTGCTC
ATATGCTTCTGCACCAACGCAGCCACCGCGGAGAGCGTCCCTTCCCGTGCTCAGAGTGCGATAA
GCGTTTCAGCAAGAAAGCCCACCTGACCCGTCACCTGCGCACTCACACTGGCGAGCGTCCCTAC
CCGTGCGCCGAATGCGGCAAACGCTTCAGCCAGAAGATTCACCTAGGCTCGCACCAGAAGACCC
ACACTGGCGAGCGGCCCTTCCCCTGCACGGAATGCGAGAAGCGTTTCCGCAAGAAGACGCACCT
GATCCGCCACCAGCGTATCCACACAGGTGAGAGGCCCTACCAGTGCACCCAGTGTACACGCAGC
TTCACCCACAAGCAACATCTGGTGAGGCACCAGAGGGTGCACGATGCTGCTAGCCGCACCCGGT
CCTCTCCCGACATTCCTGCTACTCCCCATCCCCCGACCGCGTCTCTTGCCCCATCCCCTACTGG
GCCCAAGCCTTTCGCCTGCTCCCATTGCGGGCAGAGCTTTGGCTGGAAAAAGAACCTCGCTACG
CATCAGAGTCTGCACCTCACCGAGGGTCGTCCTTTTGGGTGCGATGAATGTGCACTCGGCACCA
ACGTGGACCCCGCTGCCGAGCCCTCCGCCTGCACTCCCCATGCGCCTGACTGTGGCCCGGGTTC
GGGGCCCGTGGCACCCCAGCGCACGACCTCTAGCGAGCGCTCCTTCTTCTGCCCCGACTGCGGG
CGCGGCTTCGCCCACGGGCAGCACCTGGCCCGGCACCGGCGCGTGCACACGGGTGAAAGGCCAT
TTGCCTGTGCTCAGTGTGGCCGCCGCTTCGGCTCACGACCCAATCTAGTCGCCCACTCCCGGGC
TCACAGCGGCGCCAGACCTTTTGCCTGTGCACAGTGTGGCCGCCGCTTCAGTCGGAAATCTCAC
CTGGGCCGCCACCAGGCAGTGCACACTGGCAGCCGCCCCCACGCTTGCGCCGTCTGCGCCCGCT
GCTTCAGCTCCAAAACCAACCTGGTCCGCCACCAGGCGATCCATACGGGCTCCCGTCCCTTTTC
CTGCCCTCAGTGCGCCAAGAGCTTCAGCCGCAAGACCCACCTGGTGCGGCACCAACGCATCCAT
GGAGAAGCGGCCCTCCCAGCCTCAGCCTCAAACCTCTCTGCTCCAGCCTGGTCCAATCCCTCCG
AGGTGGTACCGCCTCCAATCTTCTTCTAAGCCGAATTCTGACCCGCACCCTGCCTTTCCCGACA
GATTTGGGAGACTAAGTGGGTTTTCAATATTCACACCTAGGTTGCTGCCAAAGCACCAGGACAC
TTGAGTCTTTGTCCTTTCTTGAATGTTAGTTAAGAAGTCCGAAAAACATACTTAGCTCTTGACA
GTTACGACAAAGAACACAGAGAGACTACCCTTGCAGATACCACACTGAGAACCAGACATTTCTG
GGGATCAACCAGGTCAAGGGGAGACTGACTGAGCAGGAAACCTCTAAATAGAAGGAAAGAATAG
TTATTTATGTACTTGAAGGTCATTAACGTTCAGATCTGAAGTCCTGGGGCTGTTCACTGAGCCA
GGGGAGGAAAGCCTGACTCTTGTACTCACTGCCACCTCCAACCACAGGAAAAGACCTTTCCTGT
CAGTTCAGGGAAGTAAACCTAGCTAGCTGGTTCTTCCCAACCAAAGTGTATTATTCACAGATGC
CAAACAACTACCATGGTTCCGTGCGCGCTCGTGTGTCTGTGTCACACAAGTTTGGCTTGGAGGG
GGAGGTGAGGACCAAAGGACCAAAGGCTGCTCCCAGGGGCCCAGCATTATTACTGTAGGTGCTG
CAGCTCCATACCACCTGTTTGCAGCCCTTTGAGAGGCTTCCCAGAAGCATCCTTACGTGCACCT
GCCTAGGAGGTAAAGAGGAGGCAGTGCTTGAACAGGCCATTAAAAGTTGTTTCTATGTTGCCTT
TTCGACCAGTTGTCTCCTTGTGAGGAGTGCTGGAGCCTGAAGACACTACAACTGTACACCCACC
TGGGCTGACAGCAGCAGAGGGGCTGCCTGACGAGAGGGAGCAGTGGGGGGATGGGGTCTGAGTT
TAGAGAGAACTATTTTGGATTCGACCTCTTAGAGAACTTGGAGGGAAGCCTTTACTCTCCTGGA
ACTTCAATTTCTCATTAAAACGAGAGCTGGTGTTGATGAAAGCGGAGACTCCTTTCTATCCTAT
TACTAGATTACTAACTACAAAAATACCCAAGGCAACCGTCTCCTGGGTGCTAAGCACTGGGAAA
GGTCAGGAGCCAGCTAGCAAGGATCCTTCCATCACAGCTTAAGTGGGTTTCCTGGTTTGTGCTT
ACTGTTGCTGTGATTAAATGCTGACCTTGAGCA

hide sequence

RefSeq Acc Id:

XM_006236433 ⟹ XP_006236495

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	4	77,385,752 - 77,394,709 (-)	NCBI
Rnor_6.0	4	78,069,006 - 78,077,962 (-)	NCBI
Rnor_5.0	4	142,732,559 - 142,741,652 (-)	NCBI

Sequence:

show sequence

TGCTGGTCAGACAGTCTCCCGCGGGACCGCGGCGCTACCACATACTCGGCTGCCACTGGCGATT
TTAAAGACAGCCATGTACACACTGCTCTCCTCCCCAAACACGCCCCCTCCTTTCCCTGCTCCCC
CCAACTCTTCACTACTACCACCACCACCCCGTTCCGCGCTCCACCTTTCCCCAGCTCCTCCCTC
CTAGGCTGTGAGCACCCTCCCTTCTAGCCCGAGTGCCCTTCCTCCCTAGCCTCTTCTCCTTCCT
CTCCCCTCTGCCCTTCCTCGGTCCTAAGCTCCCACTTTCCATCTCCACACTCCGGGCATCTTGC
CTGCAGACCGTCACCTGCACTGAAACCCATTAGTGCACCCTCCCGCGACGGGTCTCTCGAAGAC
CCTCCGCCTCAGCCTGGTGCCCCGAAGCACTGTTCCCGCTTTCCGGGTTCCTCCCCCATCACCC
GCAACGCTACCCCGCACCCTCTCCCTCCACATCTTTCCTTCCCCTCCCCGCGAAGTTTCAGGGC
TGTCAGTCCGGGAGTCTTTCGGGCAGCCCGCACCCAAGCTGCAGGCAGCCGGCGCCATTGTGCA
AACGGCCGCCCGGGACCGGAGGCCCGAGCGCCTGGGTCCCCCAAAGCGGGCCGCGGCACGTAGC
CGCAGGAGCCCGCCAGGGTCTGTGGCCTGATCACCTAGGAGAGCCACTCCTGGTGGCCATGAGA
GAGACCCTGGAGGCCCTGAACTCTTTGGGATTCTCAGTGGGACAGCCAGAGATGGCACCCCAAA
GTGAGCCCAGGGATGGGTTCAGTAATCCCCAGGAGAAGATGTCATCTAGAGATGAGAGCACACT
GCACTCATGCTCAGGGCCTGAGACCCCTGGCCAGAAAGAAGGTATCCACACAGAACAAGCTGAA
GCTCCTTGTATGGGCAGCCAGGCCTGTATCCCACAGAAGGCCGAGCCTGCAAGCTCTGTCCCAG
GGGAGGAATGGATGATTCGGAAAGTGAAGGTAGAGGATGAGGACCAGGAGGCAGAGGAGGAGGT
GGAATGGCCCCAGCATCTCTCCTTCCTTCCCAGTCCTTTTCCTACTCCTGACTTGGGTCAGTTG
GCTGTTGCATACAAACTGGAGCCAGGGACTCCGGGGACACTAGGTGGAATCGCGCTGTCCGGGT
GGGCGCCGATCCCTGAAAAGCCTTATGGCTGCGAGGAATGCGAGCGGCGATTCCGGGACCAGCT
AACTCTGCGGCTGCATCAGAGGTTGCACCGGGGTGAGGGTCCTTGTGCCTGCCCGGACTGTGGC
CGCAGCTTCACGCAGCGTGCTCATATGCTTCTGCACCAACGCAGCCACCGCGGAGAGCGTCCCT
TCCCGTGCTCAGAGTGCGATAAGCGTTTCAGCAAGAAAGCCCACCTGACCCGTCACCTGCGCAC
TCACACTGGCGAGCGTCCCTACCCGTGCGCCGAATGCGGCAAACGCTTCAGCCAGAAGATTCAC
CTAGGCTCGCACCAGAAGACCCACACTGGCGAGCGGCCCTTCCCCTGCACGGAATGCGAGAAGC
GTTTCCGCAAGAAGACGCACCTGATCCGCCACCAGCGTATCCACACAGGTGAGAGGCCCTACCA
GTGCACCCAGTGTACACGCAGCTTCACCCACAAGCAACATCTGGTGAGGCACCAGAGGGTGCAC
GATGCTGCTAGCCGCACCCGGTCCTCTCCCGACATTCCTGCTACTCCCCATCCCCCGACCGCGT
CTCTTGCCCCATCCCCTACTGGGCCCAAGCCTTTCGCCTGCTCCCATTGCGGGCAGAGCTTTGG
CTGGAAAAAGAACCTCGCTACGCATCAGAGTCTGCACCTCACCGAGGGTCGTCCTTTTGGGTGC
GATGAATGTGCACTCGGCACCAACGTGGACCCCGCTGCCGAGCCCTCCGCCTGCACTCCCCATG
CGCCTGACTGTGGCCCGGGTTCGGGGCCCGTGGCACCCCAGCGCACGACCTCTAGCGAGCGCTC
CTTCTTCTGCCCCGACTGCGGGCGCGGCTTCGCCCACGGGCAGCACCTGGCCCGGCACCGGCGC
GTGCACACGGGTGAAAGGCCATTTGCCTGTGCTCAGTGTGGCCGCCGCTTCGGCTCACGACCCA
ATCTAGTCGCCCACTCCCGGGCTCACAGCGGCGCCAGACCTTTTGCCTGTGCACAGTGTGGCCG
CCGCTTCAGTCGGAAATCTCACCTGGGCCGCCACCAGGCAGTGCACACTGGCAGCCGCCCCCAC
GCTTGCGCCGTCTGCGCCCGCTGCTTCAGCTCCAAAACCAACCTGGTCCGCCACCAGGCGATCC
ATACGGGCTCCCGTCCCTTTTCCTGCCCTCAGTGCGCCAAGAGCTTCAGCCGCAAGACCCACCT
GGTGCGGCACCAACGCATCCATGGAGAAGCGGCCCTCCCAGCCTCAGCCTCAAACCTCTCTGCT
CCAGCCTGGTCCAATCCCTCCGAGGTGGTACCGCCTCCAATCTTCTTCTAAGCCGAATTCTGAC
CCGCACCCTGCCTTTCCCGACAGATTTGGGAGACTAAGTGGGTTTTCAATATTCACACCTAGGT
TGCTGCCAAAGCACCAGGACACTTGAGTCTTTGTCCTTTCTTGAATGTTAGTTAAGAAGTCCGA
AAAACATACTTAGCTCTTGACAGTTACGACAAAGAACACAGAGAGACTACCCTTGCAGATACCA
CACTGAGAACCAGACATTTCTGGGGATCAACCAGGTCAAGGGGAGACTGACTGAGCAGGAAACC
TCTAAATAGAAGGAAAGAATAGTTATTTATGTACTTGAAGGTCATTAACGTTCAGATCTGAAGT
CCTGGGGCTGTTCACTGAGCCAGGGGAGGAAAGCCTGACTCTTGTACTCACTGCCACCTCCAAC
CACAGGAAAAGACCTTTCCTGTCAGTTCAGGGAAGTAAACCTAGCTAGCTGGTTCTTCCCAACC
AAAGTGTATTATTCACAGATGCCAAACAACTACCATGGTTCCGTGCGCGCTCGTGTGTCTGTGT
CACACAAGTTTGGCTTGGAGGGGGAGGTGAGGACCAAAGGACCAAAGGCTGCTCCCAGGGGCCC
AGCATTATTACTGTAGGTGCTGCAGCTCCATACCACCTGTTTGCAGCCCTTTGAGAGGCTTCCC
AGAAGCATCCTTACGTGCACCTGCCTAGGAGGTAAAGAGGAGGCAGTGCTTGAACAGGCCATTA
AAAGTTGTTTCTATGTTGCCTTTTCGACCAGTTGTCTCCTTGTGAGGAGTGCTGGAGCCTGAAG
ACACTACAACTGTACACCCACCTGGGCTGACAGCAGCAGAGGGGCTGCCTGACGAGAGGGAGCA
GTGGGGGGATGGGGTCTGAGTTTAGAGAGAACTATTTTGGATTCGACCTCTTAGAGAACTTGGA
GGGAAGCCTTTACTCTCCTGGAACTTCAATTTCTCATTAAAACGAGAGCTGGTGTTGATGAAA

hide sequence

RefSeq Acc Id:

XM_006236434 ⟹ XP_006236496

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	4	77,385,752 - 77,393,873 (-)	NCBI
Rnor_6.0	4	78,068,822 - 78,077,300 (-)	NCBI
Rnor_5.0	4	142,732,559 - 142,741,652 (-)	NCBI

Sequence:

show sequence

ACACCGAGGCTCCGGAGCAGGCATCTCCGCCCGCCACCCAAACGGAGCTTTACAAGCCCTGCCG
GCTCACGGCAGGTGACAACCCCGAGGGAAGGGGCGCGCAGACGCGAGTGTGGGGGAGGGGCGGG
GGTCAGAAGAGGGAGGGAAGGGAGTCAGGAGGGAGGGTCCAGGCGCAGAGGGGGAGACTAGGAA
ACTGGAGGGGATGGCAAGGACTAGAAGAGGCCCGGTGGGAGCAGGGTCTGTGGCCTGATCACCT
AGGAGAGCCACTCCTGGTGGCCATGAGAGAGACCCTGGAGGCCCTGAACTCTTTGGGATTCTCA
GTGGGACAGCCAGAGATGGCACCCCAAAGTGAGCCCAGGGATGGGTTCAGTAATCCCCAGGAGA
AGATGTCATCTAGAGATGAGAGCACACTGCACTCATGCTCAGGGCCTGAGACCCCTGGCCAGAA
AGAAGGTATCCACACAGAACAAGCTGAAGCTCCTTGTATGGGCAGCCAGGCCTGTATCCCACAG
AAGGCCGAGCCTGCAAGCTCTGTCCCAGGGGAGGAATGGATGATTCGGAAAGTGAAGGTAGAGG
ATGAGGACCAGGAGGCAGAGGAGGAGGTGGAATGGCCCCAGCATCTCTCCTTCCTTCCCAGTCC
TTTTCCTACTCCTGACTTGGGTCAGTTGGCTGTTGCATACAAACTGGAGCCAGGGACTCCGGGG
ACACTAGGTGGAATCGCGCTGTCCGGGTGGGCGCCGATCCCTGAAAAGCCTTATGGCTGCGAGG
AATGCGAGCGGCGATTCCGGGACCAGCTAACTCTGCGGCTGCATCAGAGGTTGCACCGGGGTGA
GGGTCCTTGTGCCTGCCCGGACTGTGGCCGCAGCTTCACGCAGCGTGCTCATATGCTTCTGCAC
CAACGCAGCCACCGCGGAGAGCGTCCCTTCCCGTGCTCAGAGTGCGATAAGCGTTTCAGCAAGA
AAGCCCACCTGACCCGTCACCTGCGCACTCACACTGGCGAGCGTCCCTACCCGTGCGCCGAATG
CGGCAAACGCTTCAGCCAGAAGATTCACCTAGGCTCGCACCAGAAGACCCACACTGGCGAGCGG
CCCTTCCCCTGCACGGAATGCGAGAAGCGTTTCCGCAAGAAGACGCACCTGATCCGCCACCAGC
GTATCCACACAGGTGAGAGGCCCTACCAGTGCACCCAGTGTACACGCAGCTTCACCCACAAGCA
ACATCTGGTGAGGCACCAGAGGGTGCACGATGCTGCTAGCCGCACCCGGTCCTCTCCCGACATT
CCTGCTACTCCCCATCCCCCGACCGCGTCTCTTGCCCCATCCCCTACTGGGCCCAAGCCTTTCG
CCTGCTCCCATTGCGGGCAGAGCTTTGGCTGGAAAAAGAACCTCGCTACGCATCAGAGTCTGCA
CCTCACCGAGGGTCGTCCTTTTGGGTGCGATGAATGTGCACTCGGCACCAACGTGGACCCCGCT
GCCGAGCCCTCCGCCTGCACTCCCCATGCGCCTGACTGTGGCCCGGGTTCGGGGCCCGTGGCAC
CCCAGCGCACGACCTCTAGCGAGCGCTCCTTCTTCTGCCCCGACTGCGGGCGCGGCTTCGCCCA
CGGGCAGCACCTGGCCCGGCACCGGCGCGTGCACACGGGTGAAAGGCCATTTGCCTGTGCTCAG
TGTGGCCGCCGCTTCGGCTCACGACCCAATCTAGTCGCCCACTCCCGGGCTCACAGCGGCGCCA
GACCTTTTGCCTGTGCACAGTGTGGCCGCCGCTTCAGTCGGAAATCTCACCTGGGCCGCCACCA
GGCAGTGCACACTGGCAGCCGCCCCCACGCTTGCGCCGTCTGCGCCCGCTGCTTCAGCTCCAAA
ACCAACCTGGTCCGCCACCAGGCGATCCATACGGGCTCCCGTCCCTTTTCCTGCCCTCAGTGCG
CCAAGAGCTTCAGCCGCAAGACCCACCTGGTGCGGCACCAACGCATCCATGGAGAAGCGGCCCT
CCCAGCCTCAGCCTCAAACCTCTCTGCTCCAGCCTGGTCCAATCCCTCCGAGGTGGTACCGCCT
CCAATCTTCTTCTAAGCCGAATTCTGACCCGCACCCTGCCTTTCCCGACAGATTTGGGAGACTA
AGTGGGTTTTCAATATTCACACCTAGGTTGCTGCCAAAGCACCAGGACACTTGAGTCTTTGTCC
TTTCTTGAATGTTAGTTAAGAAGTCCGAAAAACATACTTAGCTCTTGACAGTTACGACAAAGAA
CACAGAGAGACTACCCTTGCAGATACCACACTGAGAACCAGACATTTCTGGGGATCAACCAGGT
CAAGGGGAGACTGACTGAGCAGGAAACCTCTAAATAGAAGGAAAGAATAGTTATTTATGTACTT
GAAGGTCATTAACGTTCAGATCTGAAGTCCTGGGGCTGTTCACTGAGCCAGGGGAGGAAAGCCT
GACTCTTGTACTCACTGCCACCTCCAACCACAGGAAAAGACCTTTCCTGTCAGTTCAGGGAAGT
AAACCTAGCTAGCTGGTTCTTCCCAACCAAAGTGTATTATTCACAGATGCCAAACAACTACCAT
GGTTCCGTGCGCGCTCGTGTGTCTGTGTCACACAAGTTTGGCTTGGAGGGGGAGGTGAGGACCA
AAGGACCAAAGGCTGCTCCCAGGGGCCCAGCATTATTACTGTAGGTGCTGCAGCTCCATACCAC
CTGTTTGCAGCCCTTTGAGAGGCTTCCCAGAAGCATCCTTACGTGCACCTGCCTAGGAGGTAAA
GAGGAGGCAGTGCTTGAACAGGCCATTAAAAGTTGTTTCTATGTTGCCTTTTCGACCAGTTGTC
TCCTTGTGAGGAGTGCTGGAGCCTGAAGACACTACAACTGTACACCCACCTGGGCTGACAGCAG
CAGAGGGGCTGCCTGACGAGAGGGAGCAGTGGGGGGATGGGGTCTGAGTTTAGAGAGAACTATT
TTGGATTCGACCTCTTAGAGAACTTGGAGGGAAGCCTTTACTCTCCTGGAACTTCAATTTCTCA
TTAAAACGAGAGCTGGTGTTGATGAAAGCGGAGACTCCTTTCTATCCTATTACTAGATTACTAA
CTACAAAAATACCCAAGGCAACCGTCTCCTGGGTGCTAAGCACTGGGAAAGGTCAGGAGCCAGC
TAGCAAGGATCCTTCCATCACAGCTTAAGTGGGTTTCCTGGTTTGTGCTTACTGTTGCTGTGAT
TAAATGCTGACCTTGAGCA

hide sequence

RefSeq Acc Id:

XM_017592790 ⟹ XP_017448279

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	4	77,385,752 - 77,394,709 (-)	NCBI
Rnor_6.0	4	78,069,006 - 78,077,962 (-)	NCBI

Sequence:

show sequence

TGCTGGTCAGACAGTCTCCCGCGGGACCGCGGCGCTACCACATACTCGGCTGCCACTGGCGATT
TTAAAGACAGCCATGTACACACTGCTCTCCTCCCCAAACACGCCCCCTCCTTTCCCTGCTCCCC
CCAACTCTTCACTACTACCACCACCACCCCGTTCCGCGCTCCACCTTTCCCCAGCTCCTCCCTC
CTAGGCTGTGAGCACCCTCCCTTCTAGCCCGAGTGCCCTTCCTCCCTAGCCTCTTCTCCTTCCT
CTCCCCTCTGCCCTTCCTCGGTCCTAAGCTCCCACTTTCCATCTCCACACTCCGGGCATCTTGC
CTGCAGACCGTCACCTGCACTGAAACCCATTAGTGCACCCTCCCGCGACGGGTCTCTCGAAGAC
CCTCCGCCTCAGCCTGGTGCCCCGAAGCACTGTTCCCGCTTTCCGGGTTCCTCCCCCATCACCC
GCAACGCTACCCCGCACCCTCTCCCTCCACATCTTTCCTTCCCCTCCCCGCGAAGTTTCAGGGC
TGTCAGTCCGGGAGTCTTTCGGGCAGCCCGCACCCAAGCTGCAGGCAGCCGGCGCCATTGTGCA
AACGGCCGCCCGGGACCGGAGGCCCGAGCGCCTGGGTCCCCCAAAGCGGGCCGCGGCACGTAGC
CGCAGGAGCCCGCCAGGATTCTCAGTGGGACAGCCAGAGATGGCACCCCAAAGTGAGCCCAGGG
ATGGGTTCAGTAATCCCCAGGAGAAGATGTCATCTAGAGATGAGAGCACACTGCACTCATGCTC
AGGGCCTGAGACCCCTGGCCAGAAAGAAGGTATCCACACAGAACAAGCTGAAGCTCCTTGTATG
GGCAGCCAGGCCTGTATCCCACAGAAGGCCGAGCCTGCAAGCTCTGTCCCAGGGGAGGAATGGA
TGATTCGGAAAGTGAAGGTAGAGGATGAGGACCAGGAGGCAGAGGAGGAGGTGGAATGGCCCCA
GCATCTCTCCTTCCTTCCCAGTCCTTTTCCTACTCCTGACTTGGGTCAGTTGGCTGTTGCATAC
AAACTGGAGCCAGGGACTCCGGGGACACTAGGTGGAATCGCGCTGTCCGGGTGGGCGCCGATCC
CTGAAAAGCCTTATGGCTGCGAGGAATGCGAGCGGCGATTCCGGGACCAGCTAACTCTGCGGCT
GCATCAGAGGTTGCACCGGGGTGAGGGTCCTTGTGCCTGCCCGGACTGTGGCCGCAGCTTCACG
CAGCGTGCTCATATGCTTCTGCACCAACGCAGCCACCGCGGAGAGCGTCCCTTCCCGTGCTCAG
AGTGCGATAAGCGTTTCAGCAAGAAAGCCCACCTGACCCGTCACCTGCGCACTCACACTGGCGA
GCGTCCCTACCCGTGCGCCGAATGCGGCAAACGCTTCAGCCAGAAGATTCACCTAGGCTCGCAC
CAGAAGACCCACACTGGCGAGCGGCCCTTCCCCTGCACGGAATGCGAGAAGCGTTTCCGCAAGA
AGACGCACCTGATCCGCCACCAGCGTATCCACACAGGTGAGAGGCCCTACCAGTGCACCCAGTG
TACACGCAGCTTCACCCACAAGCAACATCTGGTGAGGCACCAGAGGGTGCACGATGCTGCTAGC
CGCACCCGGTCCTCTCCCGACATTCCTGCTACTCCCCATCCCCCGACCGCGTCTCTTGCCCCAT
CCCCTACTGGGCCCAAGCCTTTCGCCTGCTCCCATTGCGGGCAGAGCTTTGGCTGGAAAAAGAA
CCTCGCTACGCATCAGAGTCTGCACCTCACCGAGGGTCGTCCTTTTGGGTGCGATGAATGTGCA
CTCGGCACCAACGTGGACCCCGCTGCCGAGCCCTCCGCCTGCACTCCCCATGCGCCTGACTGTG
GCCCGGGTTCGGGGCCCGTGGCACCCCAGCGCACGACCTCTAGCGAGCGCTCCTTCTTCTGCCC
CGACTGCGGGCGCGGCTTCGCCCACGGGCAGCACCTGGCCCGGCACCGGCGCGTGCACACGGGT
GAAAGGCCATTTGCCTGTGCTCAGTGTGGCCGCCGCTTCGGCTCACGACCCAATCTAGTCGCCC
ACTCCCGGGCTCACAGCGGCGCCAGACCTTTTGCCTGTGCACAGTGTGGCCGCCGCTTCAGTCG
GAAATCTCACCTGGGCCGCCACCAGGCAGTGCACACTGGCAGCCGCCCCCACGCTTGCGCCGTC
TGCGCCCGCTGCTTCAGCTCCAAAACCAACCTGGTCCGCCACCAGGCGATCCATACGGGCTCCC
GTCCCTTTTCCTGCCCTCAGTGCGCCAAGAGCTTCAGCCGCAAGACCCACCTGGTGCGGCACCA
ACGCATCCATGGAGAAGCGGCCCTCCCAGCCTCAGCCTCAAACCTCTCTGCTCCAGCCTGGTCC
AATCCCTCCGAGGTGGTACCGCCTCCAATCTTCTTCTAAGCCGAATTCTGACCCGCACCCTGCC
TTTCCCGACAGATTTGGGAGACTAAGTGGGTTTTCAATATTCACACCTAGGTTGCTGCCAAAGC
ACCAGGACACTTGAGTCTTTGTCCTTTCTTGAATGTTAGTTAAGAAGTCCGAAAAACATACTTA
GCTCTTGACAGTTACGACAAAGAACACAGAGAGACTACCCTTGCAGATACCACACTGAGAACCA
GACATTTCTGGGGATCAACCAGGTCAAGGGGAGACTGACTGAGCAGGAAACCTCTAAATAGAAG
GAAAGAATAGTTATTTATGTACTTGAAGGTCATTAACGTTCAGATCTGAAGTCCTGGGGCTGTT
CACTGAGCCAGGGGAGGAAAGCCTGACTCTTGTACTCACTGCCACCTCCAACCACAGGAAAAGA
CCTTTCCTGTCAGTTCAGGGAAGTAAACCTAGCTAGCTGGTTCTTCCCAACCAAAGTGTATTAT
TCACAGATGCCAAACAACTACCATGGTTCCGTGCGCGCTCGTGTGTCTGTGTCACACAAGTTTG
GCTTGGAGGGGGAGGTGAGGACCAAAGGACCAAAGGCTGCTCCCAGGGGCCCAGCATTATTACT
GTAGGTGCTGCAGCTCCATACCACCTGTTTGCAGCCCTTTGAGAGGCTTCCCAGAAGCATCCTT
ACGTGCACCTGCCTAGGAGGTAAAGAGGAGGCAGTGCTTGAACAGGCCATTAAAAGTTGTTTCT
ATGTTGCCTTTTCGACCAGTTGTCTCCTTGTGAGGAGTGCTGGAGCCTGAAGACACTACAACTG
TACACCCACCTGGGCTGACAGCAGCAGAGGGGCTGCCTGACGAGAGGGAGCAGTGGGGGGATGG
GGTCTGAGTTTAGAGAGAACTATTTTGGATTCGACCTCTTAGAGAACTTGGAGGGAAGCCTTTA
CTCTCCTGGAACTTCAATTTCTCATTAAAACGAGAGCTGGTGTTGATGAAA

hide sequence

Protein Sequences


Protein RefSeqs	NP_001019498	(Get FASTA)	NCBI Sequence Viewer
	XP_006236493	(Get FASTA)	NCBI Sequence Viewer
	XP_006236494	(Get FASTA)	NCBI Sequence Viewer
	XP_006236495	(Get FASTA)	NCBI Sequence Viewer
	XP_006236496	(Get FASTA)	NCBI Sequence Viewer
	XP_017448279	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH86534	(Get FASTA)	NCBI Sequence Viewer
	EDL88269	(Get FASTA)	NCBI Sequence Viewer
	EDL88270	(Get FASTA)	NCBI Sequence Viewer
	EDL88271	(Get FASTA)	NCBI Sequence Viewer
	EDL88272	(Get FASTA)	NCBI Sequence Viewer
	EDL88273	(Get FASTA)	NCBI Sequence Viewer
	EDL88274	(Get FASTA)	NCBI Sequence Viewer
	Q5RJR4	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:

NP_001019498 ⟸ NM_001024327

- UniProtKB:

Q5RJR4 (UniProtKB/Swiss-Prot)

- Sequence:

show sequence

MRETLEALNSLGFSVGQPEMAPQSEPRDGFSNPQEKMSSRDESTLHSCSGPETPGQKEGIHTEQ
AEAPCMGSQACIPQKAEPASSVPGEEWMIRKVKVEDEDQEAEEEVEWPQHLSFLPSPFPTPDLG
QLAVAYKLEPGTPGTLGGIALSGWAPIPEKPYGCEECERRFRDQLTLRLHQRLHRGEGPCACPD
CGRSFTQRAHMLLHQRSHRGERPFPCSECDKRFSKKAHLTRHLRTHTGERPYPCAECGKRFSQK
IHLGSHQKTHTGERPFPCTECEKRFRKKTHLIRHQRIHTGERPYQCTQCTRSFTHKQHLVRHQR
VHDAASRTRSSPDIPATPHPPTASLAPSPTGPKPFACSHCGQSFGWKKNLATHQSLHLTEGRPF
GCDECALGTNVDPAAEPSACTPHAPDCGPGSGPVAPQRTTSSERSFFCPDCGRGFAHGQHLARH
RRVHTGERPFACAQCGRRFGSRPNLVAHSRAHSGARPFACAQCGRRFSRKSHLGRHQAVHTGSR
PHACAVCARCFSSKTNLVRHQAIHTGSRPFSCPQCAKSFSRKTHLVRHQRIHGEAALPASASNL
SAPAWSNPSEVVPPPIFF

hide sequence

RefSeq Acc Id:	XP_006236495 ⟸ XM_006236433
- Peptide Label:	isoform X1
- UniProtKB:	Q5RJR4 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MRETLEALNSLGFSVGQPEMAPQSEPRDGFSNPQEKMSSRDESTLHSCSGPETPGQKEGIHTEQ AEAPCMGSQACIPQKAEPASSVPGEEWMIRKVKVEDEDQEAEEEVEWPQHLSFLPSPFPTPDLG QLAVAYKLEPGTPGTLGGIALSGWAPIPEKPYGCEECERRFRDQLTLRLHQRLHRGEGPCACPD CGRSFTQRAHMLLHQRSHRGERPFPCSECDKRFSKKAHLTRHLRTHTGERPYPCAECGKRFSQK IHLGSHQKTHTGERPFPCTECEKRFRKKTHLIRHQRIHTGERPYQCTQCTRSFTHKQHLVRHQR VHDAASRTRSSPDIPATPHPPTASLAPSPTGPKPFACSHCGQSFGWKKNLATHQSLHLTEGRPF GCDECALGTNVDPAAEPSACTPHAPDCGPGSGPVAPQRTTSSERSFFCPDCGRGFAHGQHLARH RRVHTGERPFACAQCGRRFGSRPNLVAHSRAHSGARPFACAQCGRRFSRKSHLGRHQAVHTGSR PHACAVCARCFSSKTNLVRHQAIHTGSRPFSCPQCAKSFSRKTHLVRHQRIHGEAALPASASNL SAPAWSNPSEVVPPPIFF hide sequence

RefSeq Acc Id:	XP_006236496 ⟸ XM_006236434
- Peptide Label:	isoform X1
- UniProtKB:	Q5RJR4 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MRETLEALNSLGFSVGQPEMAPQSEPRDGFSNPQEKMSSRDESTLHSCSGPETPGQKEGIHTEQ AEAPCMGSQACIPQKAEPASSVPGEEWMIRKVKVEDEDQEAEEEVEWPQHLSFLPSPFPTPDLG QLAVAYKLEPGTPGTLGGIALSGWAPIPEKPYGCEECERRFRDQLTLRLHQRLHRGEGPCACPD CGRSFTQRAHMLLHQRSHRGERPFPCSECDKRFSKKAHLTRHLRTHTGERPYPCAECGKRFSQK IHLGSHQKTHTGERPFPCTECEKRFRKKTHLIRHQRIHTGERPYQCTQCTRSFTHKQHLVRHQR VHDAASRTRSSPDIPATPHPPTASLAPSPTGPKPFACSHCGQSFGWKKNLATHQSLHLTEGRPF GCDECALGTNVDPAAEPSACTPHAPDCGPGSGPVAPQRTTSSERSFFCPDCGRGFAHGQHLARH RRVHTGERPFACAQCGRRFGSRPNLVAHSRAHSGARPFACAQCGRRFSRKSHLGRHQAVHTGSR PHACAVCARCFSSKTNLVRHQAIHTGSRPFSCPQCAKSFSRKTHLVRHQRIHGEAALPASASNL SAPAWSNPSEVVPPPIFF hide sequence

RefSeq Acc Id:	XP_006236494 ⟸ XM_006236432
- Peptide Label:	isoform X1
- UniProtKB:	Q5RJR4 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MRETLEALNSLGFSVGQPEMAPQSEPRDGFSNPQEKMSSRDESTLHSCSGPETPGQKEGIHTEQ AEAPCMGSQACIPQKAEPASSVPGEEWMIRKVKVEDEDQEAEEEVEWPQHLSFLPSPFPTPDLG QLAVAYKLEPGTPGTLGGIALSGWAPIPEKPYGCEECERRFRDQLTLRLHQRLHRGEGPCACPD CGRSFTQRAHMLLHQRSHRGERPFPCSECDKRFSKKAHLTRHLRTHTGERPYPCAECGKRFSQK IHLGSHQKTHTGERPFPCTECEKRFRKKTHLIRHQRIHTGERPYQCTQCTRSFTHKQHLVRHQR VHDAASRTRSSPDIPATPHPPTASLAPSPTGPKPFACSHCGQSFGWKKNLATHQSLHLTEGRPF GCDECALGTNVDPAAEPSACTPHAPDCGPGSGPVAPQRTTSSERSFFCPDCGRGFAHGQHLARH RRVHTGERPFACAQCGRRFGSRPNLVAHSRAHSGARPFACAQCGRRFSRKSHLGRHQAVHTGSR PHACAVCARCFSSKTNLVRHQAIHTGSRPFSCPQCAKSFSRKTHLVRHQRIHGEAALPASASNL SAPAWSNPSEVVPPPIFF hide sequence

RefSeq Acc Id:	XP_006236493 ⟸ XM_006236431
- Peptide Label:	isoform X1
- UniProtKB:	Q5RJR4 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MRETLEALNSLGFSVGQPEMAPQSEPRDGFSNPQEKMSSRDESTLHSCSGPETPGQKEGIHTEQ AEAPCMGSQACIPQKAEPASSVPGEEWMIRKVKVEDEDQEAEEEVEWPQHLSFLPSPFPTPDLG QLAVAYKLEPGTPGTLGGIALSGWAPIPEKPYGCEECERRFRDQLTLRLHQRLHRGEGPCACPD CGRSFTQRAHMLLHQRSHRGERPFPCSECDKRFSKKAHLTRHLRTHTGERPYPCAECGKRFSQK IHLGSHQKTHTGERPFPCTECEKRFRKKTHLIRHQRIHTGERPYQCTQCTRSFTHKQHLVRHQR VHDAASRTRSSPDIPATPHPPTASLAPSPTGPKPFACSHCGQSFGWKKNLATHQSLHLTEGRPF GCDECALGTNVDPAAEPSACTPHAPDCGPGSGPVAPQRTTSSERSFFCPDCGRGFAHGQHLARH RRVHTGERPFACAQCGRRFGSRPNLVAHSRAHSGARPFACAQCGRRFSRKSHLGRHQAVHTGSR PHACAVCARCFSSKTNLVRHQAIHTGSRPFSCPQCAKSFSRKTHLVRHQRIHGEAALPASASNL SAPAWSNPSEVVPPPIFF hide sequence

RefSeq Acc Id:	XP_017448279 ⟸ XM_017592790
- Peptide Label:	isoform X2
- UniProtKB:	A0A0G2K5V9 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAPQSEPRDGFSNPQEKMSSRDESTLHSCSGPETPGQKEGIHTEQAEAPCMGSQACIPQKAEPA SSVPGEEWMIRKVKVEDEDQEAEEEVEWPQHLSFLPSPFPTPDLGQLAVAYKLEPGTPGTLGGI ALSGWAPIPEKPYGCEECERRFRDQLTLRLHQRLHRGEGPCACPDCGRSFTQRAHMLLHQRSHR GERPFPCSECDKRFSKKAHLTRHLRTHTGERPYPCAECGKRFSQKIHLGSHQKTHTGERPFPCT ECEKRFRKKTHLIRHQRIHTGERPYQCTQCTRSFTHKQHLVRHQRVHDAASRTRSSPDIPATPH PPTASLAPSPTGPKPFACSHCGQSFGWKKNLATHQSLHLTEGRPFGCDECALGTNVDPAAEPSA CTPHAPDCGPGSGPVAPQRTTSSERSFFCPDCGRGFAHGQHLARHRRVHTGERPFACAQCGRRF GSRPNLVAHSRAHSGARPFACAQCGRRFSRKSHLGRHQAVHTGSRPHACAVCARCFSSKTNLVR HQAIHTGSRPFSCPQCAKSFSRKTHLVRHQRIHGEAALPASASNLSAPAWSNPSEVVPPPIFF hide sequence

RefSeq Acc Id:

ENSRNOP00000073578 ⟸ ENSRNOT00000080654

RefSeq Acc Id:

ENSRNOP00000010377 ⟸ ENSRNOT00000010377

Protein Domains

C2H2-type

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Strain Variation

Strain Sequence Variants (Rnor 6.0)

ACI/EurMcwi (MCW)

Visual

CSV

TAB

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

ACI/EurMcwi (RGD)

Visual

CSV

TAB

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

ACI/N (MCW)

Visual

CSV

TAB

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

BBDP/Wor (RGD)

Visual

CSV

TAB

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

BN/SsN (MCW)

Visual

CSV

TAB

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Buf/N (MCW)

Visual

CSV

TAB

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

COP/CrCrl (MCW & UW)

Visual

CSV

TAB

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob) University of Wisconsin (Dr. James Shull)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Charles River Laboratories
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)

F344/NCrl (RGD)

Visual

CSV

TAB

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

F344/NRrrc (MCW)

Visual

CSV

TAB

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

FHH/EurMcwi (MCW)

Visual

CSV

TAB

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

FHH/EurMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

FHL/EurMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

FHL/EurMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

GH/OmrMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

GK/Ox (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LE/Stm (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LEW/Crl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LEW/NCrlBR (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LH/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LL/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LN/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

M520/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

MHS/Gib (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

MNS/Gib (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

MR/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

SBH/Ygl (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	SBH/Ygl sequenced by MCW

SBH/Ygl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SBN/Ygl (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	SBN/Ygl sequenced by MCW

SBN/Ygl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SHR/NHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SHRSP/Gcrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SR/JrHsd (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Harlan Laboratories
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

SR/JrHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SS/Jr (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SS/JrHsdMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

SS/JrHsdMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WAG/Rij (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/Gcrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

WKY/NCrl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/NHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WN/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1561603	AgrOrtholog
Ensembl Genes	ENSRNOG00000007707	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein	ENSRNOP00000010377	ENTREZGENE, UniProtKB/Swiss-Prot
	ENSRNOP00000073578	ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000010377	ENTREZGENE, UniProtKB/Swiss-Prot
	ENSRNOT00000080654	UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7097755	IMAGE-MGC_LOAD
InterPro	Znf_C2H2_sf	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Znf_C2H2_type	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	rno:500110	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:105814	IMAGE-MGC_LOAD
NCBI Gene	500110	ENTREZGENE
Pfam	zf-C2H2	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Zfp467	PhenoGen
PROSITE	ZINC_FINGER_C2H2_1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	ZINC_FINGER_C2H2_2	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART	ZnF_C2H2	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP	SSF57667	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt	A0A0G2K5V9	ENTREZGENE, UniProtKB/TrEMBL
	Q5RJR4	ENTREZGENE, UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2011-07-19	Zfp467	zinc finger protein 467	Znf467	zinc finger protein 467	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-09-25	Znf467	zinc finger protein 467	Zfp467	zinc finger protein 467	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-03-05	Zfp467	zinc finger protein 467	LOC500110	similar to zinc finger protein EZI	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-02-09	LOC500110	similar to zinc finger protein EZI			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)