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Gene: Hmces (5-hydroxymethylcytosine binding, ES cell specific) Rattus norvegicus
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Symbol: Hmces
Name: 5-hydroxymethylcytosine binding, ES cell specific
RGD ID: 1559800
Description: Predicted to have single-stranded DNA binding activity. Predicted to be involved in double-strand break repair via alternative nonhomologous end joining; positive regulation of isotype switching; and protein-DNA covalent cross-linking. Predicted to localize to replication fork. Orthologous to human HMCES (5-hydroxymethylcytosine binding, ES cell specific); INTERACTS WITH 3-chloropropane-1,2-diol; acetamide; bisphenol A.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: 5-hydroxymethylcytosine (hmC) binding, ES cell-specific; abasic site processing protein HMCES; embryonic stem cell-specific 5-hydroxymethylcytosine-binding protein; ES cell-specific 5hmC-binding protein; hypothetical protein LOC500251; LOC500251; peptidase HMCES; putative endonuclease HMCES; putative peptidase SRAPD1; SRAP domain-containing protein 1; UPF0361 protein C3orf37 homolog
Orthologs:
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.04119,841,088 - 119,864,115 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4119,815,139 - 119,864,114 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04185,088,893 - 185,111,627 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44122,136,275 - 122,154,853 (+)NCBIRGSC3.4rn4RGSC3.4
Celera4109,352,960 - 109,375,056 (+)NCBICelera
Cytogenetic Map4q34NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)

Expression


Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome

Strain Variation

Strain Sequence Variants (Rnor 6.0)

Additional Information

External Database Links
Nomenclature History
 
More on Hmces
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

RGD Object Information
RGD ID: 1559800
Created: 2006-02-09
Species: Rattus norvegicus
Last Modified: 2020-09-29
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.