Submit Data |  Help |  Video Tutorials |  News |  Publications |  FTP Download |  REST API |  Citing RGD |  Contact   
Gene: Noto (notochord homeobox) Rattus norvegicus
Analyze
Symbol: Noto
Name: notochord homeobox
RGD ID: 1562910
Description: Predicted to have DNA-binding transcription repressor activity, RNA polymerase II-specific; RNA polymerase II cis-regulatory region sequence-specific DNA binding activity; and RNA polymerase II intronic transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in several processes, including embryonic organ development; motile cilium assembly; and nervous system development. Predicted to localize to nucleus. Orthologous to human NOTO (notochord homeobox); INTERACTS WITH bisphenol A; 2,3',4,4',5-Pentachlorobiphenyl (ortholog); 2,3,7,8-tetrachlorodibenzodioxine (ortholog).
Type: protein-coding
RefSeq Status: INFERRED
Also known as: homeobox protein notochord; LOC502857; notochord homolog; notochord homolog (Xenopus laevis); RGD1562910; similar to Not homeodomain protein
Orthologs:
Homo sapiens (human) : NOTO (notochord homeobox)  HGNC  Alliance
Mus musculus (house mouse) : Noto (notochord homeobox)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Noto (notochord homeobox)
Pan paniscus (bonobo/pygmy chimpanzee) : NOTO (notochord homeobox)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Noto (notochord homeobox)
Sus scrofa (pig) : NOTO (notochord homeobox)
Chlorocebus sabaeus (African green monkey) : NOTO (notochord homeobox)
Heterocephalus glaber (naked mole-rat) : Noto (notochord homeobox)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.04117,206,355 - 117,210,856 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4117,206,355 - 117,210,856 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04181,783,984 - 181,788,485 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44119,677,428 - 119,681,667 (+)NCBIRGSC3.4rn4RGSC3.4
Celera4106,943,268 - 106,947,507 (+)NCBICelera
Cytogenetic Map4q34NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References - curated
References - uncurated

Genomics

Comparative Map Data
QTLs in Region (Rnor_6.0)
miRNA Target Status

Expression

RNA-SEQ Expression

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome

Strain Variation

Strain Sequence Variants (Rnor 6.0)

Additional Information

External Database Links
Nomenclature History
 
More on Noto
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

RGD Object Information
RGD ID: 1562910
Created: 2006-02-09
Species: Rattus norvegicus
Last Modified: 2020-08-20
Status: ACTIVE



NHLBI Logo

RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.