Anxrr54 QTL Report (Rattus norvegicus) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
QTL Registration

QTL: Anxrr54 (Anxiety related response QTL 54) Rattus norvegicus

Symbol: Anxrr54
Name: Anxiety related response QTL 54
RGD ID: 12798519
Trait: locomotor behavior trait   (VT:0001392)    
Measurement Type: distance moved per unit of time into, out of or within a discrete space in an experimental apparatus   (CMO:0001493)    
LOD Score: 2.54
P Value: 0.05
Variance: Not Available
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr84116,184,844 - 161,184,844RGD_MAPPER_PIPELINE
mRatBN7.24114,627,026 - 159,627,026RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.04112,807,675 - 157,807,675RGD_MAPPER_PIPELINERnor6.0
Rnor_5.04177,495,398 - 191,499,474RGD_MAPPER_PIPELINERnor5.0
RGSC_v3.44116,314,137 - 129,309,017RGD_MAPPER_PIPELINERGSC3.4
Cross Type: intercross
Strains Crossed: SHR/NCrlAnra LEW/HsdUnibAnra 
JBrowse: View Region in Genome Browser (JBrowse)
Model




Clinical Measurement
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Anxrr54Ratdistance moved per unit of time into, out of or within a discrete space in an experimental apparatus  IDA 11566049 RGD 

Experimental Condition
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Anxrr54Rataudible tone stimulus  IDA 11566049 RGD 
Anxrr54Ratvisible light stimulus  IDA 11566049 RGD 

Measurement Method
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Anxrr54Ratelevated plus maze apparatus method  IDA 11566049 RGD 

Rat Strain
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Anxrr54RatLEW/HsdUnibAnra  IEA 11566049 RGD 
Anxrr54RatSHR/NCrlAnra  IEA 11566049 RGD 

Vertebrate Trait
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Anxrr54Ratlocomotor behavior trait  IDA 11566049 RGD 


#
Reference Title
Reference Citation
1. Genetic evidence for chromosome 4 loci influencing learning and memory. Anselmi M, etal., Neurobiol Learn Mem. 2016 May;131:182-91. doi: 10.1016/j.nlm.2016.03.024. Epub 2016 Apr 1.


1 to 20 of 693 rows
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
1559797Eva1aeva-1 homolog A, regulator of programmed cell death4114593773114643011Rat
7520921Prdx6-ps2peroxiredoxin 6, pseudogene 24114684131114684952Rat
3811Tacr1tachykinin receptor 14114920844115089733Rat
41166952LOC120102316uncharacterized LOC1201023164115098139115106023Rat
1307793Pole4DNA polymerase epsilon 4, accessory subunit4115165285115171097Rat
7711844LOC102547728uncharacterized LOC1025477284115172801115177968Rat
41162732LOC120102317uncharacterized LOC1201023174115217376115228513Rat
2797Hk2hexokinase 24115234509115283530Rat
1592965Rps27a-ps18ribosomal protein S27a, pseudogene 184115353266115353807Rat
3658Sema4fsemaphorin 4F4115411411115437721Rat
1563842M1apmeiosis 1 associated protein4115445910115536745Rat
1596846Rps25-ps8ribosomal protein S25, pseudogene 84115473792115474236Rat
41270105LOC120102319uncharacterized LOC1201023194115515273115521277Rat
1309499Dok1docking protein 14115537453115540464Rat
1311011Loxl3lysyl oxidase-like 34115540640115556958Rat
1308906Htra2HtrA serine peptidase 24115556914115560202Rat
1591777Aup1AUP1, lipid droplet regulating VLDL assembly factor4115560274115563346Rat
1591766Dqx1DEAQ box RNA-dependent ATPase 14115563497115572598Rat
1595506Tlx2T-cell leukemia homeobox 24115573736115576097Rat
1549782Pcgf1polycomb group ring finger 14115576165115587019Rat

1 to 20 of 693 rows
1 to 20 of 979 rows
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Expected Size
Chr
Start
Stop
Species
Match
10048D4Mit202394154902669154902892Ratregion
10049D4Wox161434154896195154896338Ratregion
10156D4Mit181934131730729131730924Ratregion
10157D4Wox171574131730755131730914Ratregion
10158D4Arb162514131730738131730991Ratregion
10266D4Arb41604151805502151805662Ratregion
10267D4Mgh301334151805495151805620Ratregion
10513D4Arb63064118050728118051034Ratregion
10522D4Wox141204157578205157578332Ratregion
10522D4Wox141204157578205157578332Ratregion
10523D4Wox151704157578615157578785Ratregion
10523D4Wox151704157578615157578785Ratregion
10524D4Mit31214157573398157573521Ratregion
10524D4Mit31214157573398157573521Ratregion
10526D4Got1341474157573397157573546Ratregion
10526D4Got1341474157573397157573546Ratregion
11146D1Mgh301184157578663157578781Ratregion
11146D1Mgh301184157578663157578781Ratregion
33933D4Mit161104128289450128289560Ratregion
33995D4Mit191294146565735146565864Ratregion
1 to 20 of 979 rows

Flank 1: (D4Rat176)
Rat AssemblyChrPosition (strand)Source
GRCr84116,184,844 - 116,185,060 (+)Marker Load Pipeline
mRatBN7.24114,627,026 - 114,627,242 (+)MAPPER
Rnor_6.04112,807,675 - 112,807,890NCBI
Rnor_5.04177,495,398 - 177,495,613UniSTS
RGSC_v3.44116,314,137 - 116,314,353RGD
RGSC_v3.44116,314,138 - 116,314,353UniSTS
RGSC_v3.14116,558,618 - 116,558,834RGD
Celera4103,625,246 - 103,625,461UniSTS
SHRSP x BN Map449.87UniSTS
SHRSP x BN Map449.87RGD
Cytogenetic Map4q34UniSTS
Flank 2: (D4Mgh27)
Rat AssemblyChrPosition (strand)Source
Rnor_5.04191,499,221 - 191,499,474NCBI
RGSC_v3.44129,308,765 - 129,309,017RGD
RGSC_v3.14129,553,606 - 129,553,858RGD
RH 3.4 Map4770.5UniSTS
RH 3.4 Map4770.5RGD
RH 2.0 Map4858.9RGD
Cytogenetic Map4 RGD


1 to 10 of 92 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1582232Gluco25Glucose level QTL 253.60.0023blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)485253748148090731Rat
631689Scl4Serum cholesterol level QTL 41.90.008blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)495174120140174120Rat
1358352Srcrt3Stress Responsive Cort QTL 32.29blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)438465774146803430Rat
1582237Kidm34Kidney mass QTL 3440.0001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)4148090542168069246Rat
61446Coreg2Compensatory renal growth QTL 23.5kidney mass (VT:0002707)compensatory renal growth score (CMO:0001894)4148423102157580971Rat
1578655Bmd11Bone mineral density QTL 1111femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)490850165135850165Rat
1300116Hrtrt5Heart rate QTL 53.76heart pumping trait (VT:2000009)heart rate (CMO:0000002)4116179486151161268Rat
6478693Anxrr32Anxiety related response QTL 320.00092locomotor behavior trait (VT:0001392)measurement of voluntary locomotion into, out of or within a discrete space in an experimental apparatus (CMO:0000957)4144639524182687754Rat
10755501Bp390Blood pressure QTL 3902.5arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)426775591168368347Rat
1357342Bw40Body weight QTL 400.001body mass (VT:0001259)body weight (CMO:0000012)476647384117676292Rat

1 to 10 of 92 rows


Note Type Note Reference
qtl_cross_type intercross 11566049
qtl_general number of animals used: 96 male F2 rats 11566049
qtl_general software used:animal tracking software - Anymaze, Stoelting, USA; statistics - Statistica 7.0 11566049
qtl_general LEW alleles increased distance traveled 11566049
qtl_trait_method measurement method:in the plus-maze discriminative avoidance task training session, the rat was placed in the center of the apparatus having an aversive arm with a 100 W light and an 80 dB tone speaker activated only by the presence of the rat. Total distance traveled over a 10 minute period was measured. 11566049