D4Rat45 Marker Search Result - Rat Genome Database

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Marker: D4Rat45

Symbol: D4Rat45
Previously known as: oxsts7081; R007-A09; R0007-A09; 
RGD ID: 35310
Expected Size: 164 (bp)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.24119,925,288 - 119,925,452 (+)MAPPERmRatBN7.2
Rnor_6.04119,278,131 - 119,278,294NCBIRnor6.0
Rnor_5.04183,841,375 - 183,841,538UniSTSRnor5.0
RGSC_v3.44121,649,374 - 121,649,538RGDRGSC3.4
RGSC_v3.44121,649,375 - 121,649,538UniSTSRGSC3.4
RGSC_v3.14121,893,856 - 121,894,019RGD
Celera4108,893,775 - 108,893,938UniSTS
RH 3.4 Map4706.8UniSTS
RH 3.4 Map4706.8RGD
RH 2.0 Map4736.0RGD
Cytogenetic Map4q34UniSTS
Is Marker For: Strains:   AVN/Orl   BBDP/Rhw   BBDR/Rhw   BC/CpbU   BDIX/Han   BDVII/Cub   BN/SsNHsd   BP/Cub   BUF/Pit   DA/PitN   DON/Melb   F344/Pit   FHH/Eur   IS/Kyo   LE/Mol   LEW/Pit   LH/Mav   MHS/Gib   MNRA/N   WN/N   WTC/Kyo   LOU/CHan   MNR/N   MR/Pit   ODU/N   WF/Pit   WIST/Nhg   SR/Jr   NP9   OKA/Wsl   OM/Ztm   P5C   PVG/Pit   SD/Rij   SHR/OlaHsd   SHRSP/Riv   WAG/RijKyo   GK/KyoSwe   BN-Lx/Cub   GH/Omr   NEDH/K   COP/OlaHsd  
Genes:   Arhgap25  


Annotation


#
Reference Title
Reference Citation
1. Data downloaded from Wellcome Trust, University of Oxford Data downloaded from Wellcome Trust, University of Oxford
2. High-density rat radiation hybrid maps containing over 24,000 SSLPs, genes, and ESTs provide a direct link to the rat genome sequence. Kwitek AE, etal., Genome Res. 2004 Apr;14(4):750-7
3. UniSTS Pipeline RGD automated pipelines
4. RH Map Project RH Map Project, Laboratory of Genetic Research Website, 1-JUL-99, Laboratory of Genetic Research, Medical College of Wisconsin, http://www.lgr.mcw.edu/LGR/
5. A high density integrated genetic linkage and radiation hybrid map of the laboratory rat Steen RG, Kwitek-Black AE, etal., Genome Research, 1999, 6:1-8


 
Forward Primer GCCACTCACCATGGTAAACC
Reverse Primer CATCAGCCTCCTCGTAGACC
 
Strain, Expected Size(s)

AVN/Orl 166 BBDP/Rhw 166 BBDR/Rhw 166
BC/CpbU 166 BDIX/Han 166 BDVII/Cub 166
BN-Lx/Cub 166 BN/SsNHsd 166 BP/Cub 166
BUF/Pit 166 COP/OlaHsd 166 DA/PitN 166
DON/Melb 164 F344/Pit 164 FHH/Eur 148
GH/Omr 166 GK/KyoSwe 164 IS/Kyo 168
LE/Mol 166 LEW/Pit 166 LH/Mav 164
LOU/CHan 166 MHS/Gib 166 MNR/N 166
MNRA/N 166 MR/Pit 166 NEDH/K 166
NP9 164 ODU/N 164 OKA/Wsl 164
OM/Ztm 164 P5C 164 PVG/Pit 166
SD/Rij 164 SHR/OlaHsd 164 SHRSP/Riv 164
SR/Jr 164 WAG/RijKyo 166 WF/Pit 164
WIST/Nhg 164 WN/N 166 WTC/Kyo 164


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
1562105Arhgap25Rho GTPase activating protein 254119896844119974982Rat
GenBank Nucleotide CH473957 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000234 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


1 to 10 of 49 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1582232Gluco25Glucose level QTL 253.60.0023blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)485253748148090731Rat
631689Scl4Serum cholesterol level QTL 41.90.008blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)495174120140174120Rat
1358352Srcrt3Stress Responsive Cort QTL 32.29blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)438465774146803430Rat
1578655Bmd11Bone mineral density QTL 1111femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)490850165135850165Rat
1300116Hrtrt5Heart rate QTL 53.76heart pumping trait (VT:2000009)heart rate (CMO:0000002)4116179486151161268Rat
10755501Bp390Blood pressure QTL 3902.5arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)426775591168368347Rat
61330Eau1Experimental allergic uveoretinitis QTL 10.0003uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)470362013132642728Rat
731165Uae21Urinary albumin excretion QTL 212.40.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)4106649412151649412Rat
737821Hcar9Hepatocarcinoma resistance QTL 93.7liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)4109866907167139601Rat
1549832Bss3Bone structure and strength QTL 311femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)4109827074154827074Rat

1 to 10 of 49 rows


Database
Acc Id
Source(s)
NCBI Gene 500246 UniSTS