Cia3 QTL Report (Rattus norvegicus) - Rat Genome Database

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QTL Registration

QTL: Cia3 (Collagen induced arthritis QTL 3) Rattus norvegicus

Symbol: Cia3
Name: Collagen induced arthritis QTL 3
RGD ID: 61434
Previously known as: Type II Collagen induced arthritis QTL 3
Trait: joint integrity trait   (VT:0010548)    
Measurement Type: joint inflammation composite score   (CMO:0000919)    
LOD Score: 4.8
P Value: Not Available
Variance: Not Available
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr8463,224,393 - 108,224,393RGD_MAPPER_PIPELINE
mRatBN7.24103,194,656 - 148,194,656RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.0499,066,823 - 144,066,823RGD_MAPPER_PIPELINERnor6.0
Rnor_5.04163,843,971 - 208,843,971RGDRnor5.0
RGSC_v3.44104,415,843 - 149,415,843RGDRGSC3.4
RGSC_v3.14104,660,324 - 149,660,324RGD
Cross Type: F2
Strains Crossed: F344/NHsd DA/Bkl 
JBrowse: View Region in Genome Browser (JBrowse)
Model



Disease Annotations     Click to see Annotation Detail View

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

Experimental Condition

Measurement Method

Vertebrate Trait

Rat Strain
DA/Bkl  (IEA)
F344/NHsd  (IEA)

References

References - curated
# Reference Title Reference Citation
1. Mapping and functional characterization of rat chromosome 4 regions that regulate arthritis models and phenotypes in congenic strains. Backdahl L, etal., Arthritis Rheum 2003 Feb;48(2):551-9.
2. Quantitative trait loci disposing for both experimental arthritis and encephalomyelitis in the DA rat; impact on severity of myelin oligodendrocyte glycoprotein-induced experimental autoimmune encephalomyelitis and antibody isotype pattern. Dahlman I, etal., Eur J Immunol 1998 Jul;28(7):2188-96
3. Advanced intercross line mapping suggests that ncf1 (ean6) regulates severity in an animal model of guillain-barre syndrome. Huberle A, etal., J Immunol. 2009 Apr 1;182(7):4432-8.
4. Quest for arthritis-causative genetic factors in the rat. Joe B Physiol Genomics. 2006 Oct 3;27(1):1-11. Epub 2006 Jun 27.
5. Identification of rat susceptibility loci for adjuvant-oil-induced arthritis. Lorentzen JC, etal., Proc Natl Acad Sci U S A 1998 May 26;95(11):6383-7
6. A genome scan localizes five non-MHC loci controlling collagen-induced arthritis in rats. Remmers EF, etal., Nat Genet 1996 Sep;14(1):82-5
7. Identification of genomic regions controlling experimental autoimmune uveoretinitis in rats. Sun SH, etal., Int Immunol 1999 Apr;11(4):529-34
8. Genetic control of arthritis onset, severity and chronicity in a model for rheumatoid arthritis in rats. Vingsbo-Lundberg C, etal., Nat Genet 1998 Dec;20(4):401-4
9. Localization in rats of genetic loci regulating susceptibility to experimental erosive arthritis and related autoimmune diseases. Wilder RL, etal., Transplant Proc 1999 May;31(3):1585-8
10. The complexity in hunting for candidate genes within QTL that determine susceptibility to arthritis in rats. Xiong Q, etal., Crit Rev Immunol. 2008;28(2):127-57.
11. Genetic and molecular basis of quantitative trait loci of arthritis in rat: genes and polymorphisms. Xiong Q, etal., J Immunol. 2008 Jul 15;181(2):859-64.
Related QTLs

Related QTL Description Reference
Oia2 maps to same region RGD:61087
Eau1 maps to same region RGD:61073
Aia3 maps to same region RGD:629560
Ean2 maps to same region RGD:2306769
Pia5 maps to same region RGD:61089
Aia5 maps to same region RGD:629560
Scwia1 maps to same region RGD:61064


Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
621791Exoc4exocyst complex component 446277489663551541Rat
1594818LOC689234similar to catechol-O-methyltransferase domain containing 146358360563599343Rat
1308226Lrgukleucine-rich repeats and guanylate kinase domain containing46361443163737463Rat
1308985Slc35b4solute carrier family 35 member B446374418863766200Rat
1594775Ndufab1-ps2NADH:ubiquinone oxidoreductase subunit AB1, pseudogene 246384596963846549Rat
402395750LOC134486750uncharacterized LOC13448675046387959363903482Rat
2092Akr1b1aldo-keto reductase family 1 member B146389922263913315Rat
708475Akr1b8aldo-keto reductase family 1, member B846396442163976995Rat
402013993LOC134486751uncharacterized LOC13448675146398344564001146Rat
1308277Akr1b10aldo-keto reductase family 1 member B1046400563264027860Rat
6497379Myl6-ps4myosin light chain 6, pseudogene 446402888264041917Rat
620257Akr1b7aldo-keto reductase family 1, member B746404390164083751Rat
735018Bpgmbisphosphoglycerate mutase46410680964135749Rat
2256Cald1caldesmon 146423290664414085Rat
41095347LOC120102254uncharacterized LOC12010225446432810164331037Rat
1561995Agbl3AGBL carboxypeptidase 346441613964498987Rat
1549759Tmem140transmembrane protein 14046450362164514620Rat
1563238Cyrencell cycle regulator of NHEJ46451447764519896Rat
1306697Wdr91WD repeat domain 9146452150464558873Rat
1562852Stra8stimulated by retinoic acid 846456858064591914Rat
1565367Slc23a4solute carrier family 23 member 446459842964646168Rat
9074622LOC103692099uncharacterized LOC10369209946460210464622503Rat
1310318Cnot4CCR4-NOT transcription complex, subunit 446467990364781432Rat
7739309LOC102553126uncharacterized LOC10255312646478130464796393Rat
1309413Nup205nucleoporin 20546482205164887996Rat
402309422LOC134486752large ribosomal subunit protein eL38-like46488968564890146Rat
1591053Stmp1short transmembrane mitochondrial protein 146489466364904495Rat
1359715Slc13a4solute carrier family 13 member 446491050564955986Rat
402072118LOC134486753uncharacterized LOC13448675346493082064936118Rat
1308013Fam180afamily with sequence similarity 180, member A46495999964975176Rat
402203128LOC134486754uncharacterized LOC13448675446501251765015930Rat
2319013Supt4h1-ps2SPT4 homolog, DSIF elongation factor subunit, pseudogene 246506209465063141Rat
619806Mtpnmyotrophin46512639065153803Rat
41021819LOC120102764U2 spliceosomal RNA46552976565529904Rat
41309461LOC120102671small nucleolar RNA SNORA1746554782165547949Rat
1588434Rhebl1-ps1RHEB like 1, pseudogene 146578535165786088Rat
7733981LOC102554507uncharacterized LOC10255450746597376465982269Rat
41195642LOC120102763U2 spliceosomal RNA46597420765974305Rat
620023Chrm2cholinergic receptor, muscarinic 246598113666116128Rat
2325414Mir490microRNA 49046601458666014669Rat
3444Ptnpleiotrophin46626076466342614Rat
735049Dgkidiacylglycerol kinase, iota46637789766839790Rat
1306040Creb3l2cAMP responsive element binding protein 3-like 246687462366990962Rat
620752Akr1d1aldo-keto reductase family 1, member D146712128867154543Rat
402283321LOC134486755uncharacterized LOC13448675546741372867418178Rat
41237666Hmgb1-ps18high-mobility group box 1, pseudogene 1846745884168059076Rat
1560596Trim24tripartite motif-containing 2446753424067659014Rat
1566053SvoplSVOP like46766365267725691Rat
1305055Atp6v0a4ATPase H+ transporting V0 subunit a446772714567809092Rat
1588740Tmem213transmembrane protein 21346779201067798039Rat
1306271Kiaa1549KIAA1549 homolog46780763567935303Rat
402375822LOC134486756uncharacterized LOC13448675646781701467823617Rat
1309236Zc3hav1lZC3HAV1 like46795725067972540Rat
628694Zc3hav1zinc finger CCCH-type containing, antiviral 146797905568029353Rat
1561363Ift56intraflagellar transport 5646805753068115494Rat
11448653LOC108350693high mobility group protein B1 pseudogene46805828868061271Rat
1310722Ubn2ubinuclein 246813049768218471Rat
402389889LOC134486757large ribosomal subunit protein uL14-like46822552768226046Rat
402365774LOC134486759uncharacterized LOC13448675946823815268240098Rat
11451624Trnar-ccu2transfer RNA arginine (anticodon CCU) 246824035368240425Rat
1559476Fmc1formation of mitochondrial complex V assembly factor 146824100968249045Rat
1308651Luc7l2LUC7-like 2 pre-mRNA splicing factor46825143568314861Rat
9320161LOC103692107small nuclear ribonucleoprotein E pseudogene46829385268296346Rat
41372108LOC120102490insulin-induced gene 1 protein-like46829547868300681Rat
1587495Klrg2killer cell lectin like receptor G246831434768341759Rat
402105177LOC134486758small nuclear ribonucleoprotein Sm D1-like46832603268326359Rat
1565373Clec2lC-type lectin domain family 2, member L46835902168381431Rat
1309349Hipk2homeodomain interacting protein kinase 246839935868586404Rat
3826Tbxas1thromboxane A synthase 146863184168803959Rat
41142180LOC120102680small nucleolar RNA SNORA1746873417568734305Rat
1308628Parp12poly (ADP-ribose) polymerase family, member 1246879341168851214Rat
401996367LOC134486573uncharacterized LOC13448657346885100468876700Rat
1592650Kdm7alysine demethylase 7A46886626368992979Rat
41161250Rnu6-604RNA, U6 small nuclear 60446899899768999103Rat
1583604Chmp4bl1chromatin modifying protein 4B-like 146901656569017614Rat
1310346Slc37a3solute carrier family 37, member 346907612469120392Rat
1565263Rab19RAB19, member RAS oncogene family46912396269133691Rat
1303251Mkrn1makorin ring finger protein 146914271069170211Rat
40962184LOC120102609small nucleolar RNA SNORA7146916597869166101Rat
1306142Dennd2aDENN domain containing 2A46919981469299128Rat
7643066Srsf3-ps6serine and arginine rich splicing factor 3, pseudogene 646930913169311387Rat
1311058Adck2aarF domain containing kinase 246931563369328535Rat
619908BrafB-Raf proto-oncogene, serine/threonine kinase46932977269476931Rat
7626918Tmsb10-ps5thymosin, beta 10, pseudogene 546932985469330251Rat
1308130Ndufb2NADH:ubiquinone oxidoreductase subunit B246933430769341394Rat
41225554Rpl26-ps11ribosomal protein L26, pseudogene 1146935768169362162Rat
7666339Fth1-ps1ferritin heavy chain 1, pseudogene 146939857069403679Rat
402161474LOC134486574uncharacterized LOC13448657446947774969478886Rat
402351339LOC134486760uncharacterized LOC13448676046953254269540580Rat
1309217Mrps33mitochondrial ribosomal protein S3346956350169572317Rat
40994299LOC120102257uncharacterized LOC12010225746958150969589437Rat
9116769LOC103692103uncharacterized LOC10369210346960627269619130Rat
1585938Tmem178btransmembrane protein 178B46962618870002400Rat
7574135LOC102555151uncharacterized LOC10255515146989111369906246Rat
1562046Agkacylglycerol kinase47008155070160642Rat
1563986Dennd11DENN domain containing 1147016386970232731Rat
1587197Wee2WEE2 oocyte meiosis inhibiting kinase47020445970228813Rat
3760Ssbp1single stranded DNA binding protein 147023274070242824Rat
1560602Tas2r137taste receptor, type 2, member 13747024296470256215Rat
1561194Tas2r108taste receptor, type 2, member 10847025436770255281Rat
1311823Prss37serine protease 3747028967870301259Rat
1333433Or9a7-ps1olfactory receptor family 9 subfamily A member 7, pseudogene 147032742070328361Rat
1332737Or9a4olfactory receptor family 9 subfamily A member 447036830070369244Rat
1584755Clec5aC-type lectin domain containing 5A47037385570383560Rat
1560649Tas2r138taste receptor, type 2, member 13847039504270396037Rat
9369725Mgammaltase-glucoamylase47040826370568752Rat
1308368Mgam2maltase-glucoamylase 247059070670682462Rat
1564286Moxd2monooxygenase, DBH-like 247069137370699868Rat
1303054Prss58serine protease 5847071932670731158Rat
1302947Prss59protease, serine 5947073089070751798Rat
1563848Prss3bl1protease, serine, 3B like 147076434170770286Rat
7085851810009J06RiklRIKEN cDNA 1810009J06 gene like47078178370792997Rat
6496223Poldip2-ps1DNA polymerase delta interacting protein 2, pseudogene 147082297470824913Rat
708437Prss3bprotease, serine, 3B47083848470842192Rat
6493911Trbvl1T cell receptor beta variable like 147100359871004750Rat
1311446Prss3serine protease 347116974971173223Rat
41142645Cdc42-ps1cell division cycle 42, pseudogene 147117381871174534Rat
1560283Try5trypsin 547118042171183695Rat
1359400Try10trypsin 1047121097671214479Rat
3418Prss2protease, serine, 247124496471250043Rat
1598148Prss2-ps1protease, serine, 2, pseudogene 147128434871287410Rat
7618053LOC102554637anionic trypsin-2-like47129828271302429Rat
1597830Prss2l1protease, serine, 2 like 147131099871314666Rat
3417Prss1serine protease 147133124971334452Rat
402383173LOC102554731T-cell receptor beta-2 chain C region-like47138036371385891Rat
41021783LOC120102259uncharacterized LOC12010225947138813971392164Rat
41226242LOC120102568U6 spliceosomal RNA47141596871416074Rat
1306163Ephb6Eph receptor B647145863271473889Rat
69335Trpv6transient receptor potential cation channel, subfamily V, member 647147400671489667Rat
620636Trpv5transient receptor potential cation channel, subfamily V, member 547150308571531134Rat
1595510Llcfc1LLLL and CFNLAS motif containing 147153285471534229Rat
1565470KelKell metallo-endopeptidase (Kell blood group)47153488271552297Rat
2323329Ndufa2-ps2NADH:ubiquinone oxidoreductase subunit A2, pseudogene 247156731071567720Rat
1562066Or9a2olfactory receptor family 9 subfamily A member 247163808871639032Rat
2323279Dtl-ps1denticleless E3 ubiquitin protein ligase, pseudogene 147171915171720253Rat
70946Pipprolactin induced protein47175426571758559Rat
620869Sval2seminal vesicle antigen-like 247177600471779968Rat
620867Sval1seminal vesicle antigen-like 147181186371822827Rat
1595436Tas2r139taste receptor, type 2, member 13947195191271952871Rat
1562314Tas2r144taste receptor, type 2, member 14447205281572053774Rat
735188Gstk1glutathione S-transferase kappa 147208553272089934Rat
2321500Prdx1-ps1peroxiredoxin 1, pseudogene 147210750672112564Rat
1594187Tmem139transmembrane protein 13947211343772115786Rat
69274Casp2caspase 247211626572134023Rat
41054799LOC120102741small nucleolar RNA SNORD8847212715072127238Rat
2360Clcn1chloride voltage-gated channel 147213873972168113Rat
1560653Fam131bfamily with sequence similarity 131, member B47216766772176924Rat
41384154LOC120102260uncharacterized LOC12010226047217575572183478Rat
620698Zyxzyxin47220399172213181Rat
1304680Epha1Eph receptor A147221302272227543Rat
41267017LOC120102261uncharacterized LOC12010226147222749172251586Rat
1566290Tas2r143taste receptor, type 2, member 14347225448472255368Rat
1561078Tas2r135taste receptor, type 2, member 13547225953972260504Rat
727853Tas2r126taste receptor, type 2, member 12647230044872301374Rat
1334194Or2r11olfactory receptor family 2 subfamily R member 1147233311472334055Rat
1333188Or2r3olfactory receptor family 2 subfamily R member 347234449372345434Rat
1333811Or2r3bolfactory receptor family 2 subfamily R member 3B47235615072357088Rat
1333381Or10ac1olfactory receptor family 10 subfamily AC member 147241698572417938Rat
1359405Fam115efamily with sequence similarity 115, member E47247690472491208Rat
1591778Tcaf2cTRPM8 channel associated factor 2C47252032772543150Rat
402155632LOC134486765TRPM8 channel-associated factor 2-like47255444472567279Rat
1565474Tcaf1TRPM8 channel-associated factor 147258971072639304Rat
1334371Or2f5-ps1olfactory receptor family 2 subfamily F member 5, pseudogene 147266248572662926Rat
11498065LOC10835080840S ribosomal protein S23 pseudogene47267474272675258Rat
1332594Or2f1olfactory receptor family 2 subfamily F member 147268895972689912Rat
1333677Or2f1bolfactory receptor family 2 subfamily F member 1B47270734972708299Rat
1333950Or2f2olfactory receptor family 2 subfamily F member 247274021672741172Rat
41357395LOC120102713small nucleolar RNA SNORA1747275494972755082Rat
1333504Or13m2olfactory receptor family 13 subfamily M member 247275976972760704Rat
1333975Or2q1olfactory receptor family 2 subfamily Q member 147277539072776322Rat
41399876LOC120102605U6 spliceosomal RNA47279495072795051Rat
1333367Or6b1olfactory receptor family 6 subfamily B member 147280000472800939Rat
1334415Or2a5olfactory receptor family 2 subfamily A member 547285609472857026Rat
1332716Or2a25olfactory receptor family 2 subfamily A member 2547287858872879529Rat
1333772Or2a12-ps1olfactory receptor family 2 subfamily A member 12, pseudogene 147289872972899665Rat
1333327Olr815-psolfactory receptor pseudogene 81547290617972906519Rat
1333098Or2a14olfactory receptor family 2 subfamily A member 1447294235372943285Rat
1587195Or2a52olfactory receptor family 2 subfamily A member 5247296512872966057Rat
1334209Or2a7olfactory receptor family 2 subfamily A member 747297903672979968Rat
40956713LOC120102160uncharacterized LOC12010216047298597672989150Rat
1332872Or2a51olfactory receptor family 2 subfamily A member 5147301282973013770Rat
11419404LOC108350809glyceraldehyde-3-phosphate dehydrogenase pseudogene47301418273015181Rat
1333011Or2a20olfactory receptor family 2 subfamily A member 2047303191973032881Rat
1334159Or2a57olfactory receptor family 2 subfamily A member 5747304633973047301Rat
7517929LOC102548553uncharacterized LOC10254855347307375273088275Rat
620718Arhgef5Rho guanine nucleotide exchange factor 547308724073112311Rat
1563929NoboxNOBOX oogenesis homeobox47312892673134431Rat
1589408Tpk1thiamin pyrophosphokinase 147317012573557683Rat
11481974LOC108350700uncharacterized LOC10835070047324913773293050Rat
41181679LOC120102665small nucleolar RNA SNORA1747378132673781455Rat
402360505LOC134486575uncharacterized LOC13448657547467801174683751Rat
1587194St13-ps9ST13, Hsp70 interacting protein, pseudogene 947493642474937663Rat
41128409LOC120102161uncharacterized LOC12010216147506317375074446Rat
1307076Cntnap2contactin associated protein 247510935877366258Rat
41075400Trnav-aac34transfer RNA valine (anticodon AAC) 3447572869875728770Rat
7558071LOC102549191uncharacterized LOC10254919147601424576018252Rat
9287263LOC103692120uncharacterized LOC10369212047621201076218629Rat
40926761LOC120102681small nucleolar RNA SNORA1747657583176575959Rat
7580004LOC102549132uncharacterized LOC10254913247691028076915610Rat
402190596LOC134486576uncharacterized LOC13448657647720857177217133Rat
2322482Snrpb-ps2small nuclear ribonucleoprotein polypeptides B and B1, pseudogene 247749773077498423Rat
1308157Cul1cullin 147755178177634210Rat
1595860Ezh2enhancer of zeste 2 polycomb repressive complex 2 subunit47762422377698598Rat
619835Pdia4protein disulfide isomerase family A, member 447813414478153191Rat
2293500Zfp786zinc finger protein 78647815617378171888Rat
402074511LOC134486577uncharacterized LOC13448657747817161178173060Rat
1562129Zfp398zinc finger protein 39847818062078214367Rat
1306278Zfp282zinc finger protein 28247821594078241193Rat
1307836Zfp212Zinc finger protein 21247825458278267017Rat
1304879Zfp956zinc finger protein 95647827420678298178Rat
9367833LOC103692140ATP synthase subunit delta, mitochondrial pseudogene47827510978277683Rat
401990273Znf783zinc finger protein 78347827703878283563Rat
11410744Trnac-gca1transfer RNA cysteine (anticodon GCA) 147831115478311225Rat
1566056Zfp777zinc finger protein 77747834731578377720Rat
1306209Zfp746zinc finger protein 74647838594578410240Rat
11470191Trnac-gca2transfer RNA cysteine (anticodon GCA) 247845307778453148Rat
11469937Trnac-gca3transfer RNA cysteine (anticodon GCA) 347845849078458561Rat
11368266Trnac-gca4transfer RNA cysteine (anticodon GCA) 447845945478459525Rat
11383953Trnac-gca5transfer RNA cysteine (anticodon GCA) 547846703378467104Rat
11445921Trnac-gca6transfer RNA cysteine (anticodon GCA) 647846804878468119Rat
11466918Trnac-gca7transfer RNA cysteine (anticodon GCA) 747847104678471117Rat
11391872Trnac-gca9transfer RNA cysteine (anticodon GCA) 947849448978494560Rat
11491518Trnac-gca10transfer RNA cysteine (anticodon GCA) 1047850918078509251Rat
11515722Trnac-gca11transfer RNA cysteine (anticodon GCA) 1147851125478511325Rat
11490908Trnac-gca12transfer RNA cysteine (anticodon GCA) 1247851380578513876Rat
11462536Trnac-gca13transfer RNA cysteine (anticodon GCA) 1347852118478521255Rat
11424934LOC108350703uncharacterized LOC10835070347852681378569433Rat
11380450Trnac-gca39transfer RNA cysteine (anticodon GCA) 3947853297978533050Rat
11365902Trnac-gca14transfer RNA cysteine (anticodon GCA) 1447853455878534629Rat
11442637Trnac-gca15transfer RNA cysteine (anticodon GCA) 1547854075778540828Rat
11515107Trnac-gca16transfer RNA cysteine (anticodon GCA) 1647856345578563526Rat
11368396Trnac-gca17transfer RNA cysteine (anticodon GCA) 1747856633778566408Rat
11517337Trnac-gca18transfer RNA cysteine (anticodon GCA) 1847856732878567399Rat
1583518Mrpl17-ps2mitochondrial ribosomal protein L17, pseudogene 247858388778584639Rat
11448279Trnac-gca19transfer RNA cysteine (anticodon GCA) 1947859619578596266Rat
11497862Trnac-gca20transfer RNA cysteine (anticodon GCA) 2047859721078597281Rat
11415393Trnac-gca21transfer RNA cysteine (anticodon GCA) 2147860323378603304Rat
11400791Trnac-gca22transfer RNA cysteine (anticodon GCA) 2247860424578604316Rat
11453373Trnac-gca23transfer RNA cysteine (anticodon GCA) 2347860700778607078Rat
1564070Fgfr1-ps1fibroblast growth factor receptor 1, pseudogene 147861051778612935Rat
11397796Trnac-gca24transfer RNA cysteine (anticodon GCA) 2447861379878613869Rat
11420199Trnac-gca25transfer RNA cysteine (anticodon GCA) 2547861477978614850Rat
402237524LOC134486766uncharacterized LOC13448676647862486378649326Rat
11386332Trnac-gca26transfer RNA cysteine (anticodon GCA) 2647862580778625878Rat
11390635Trnac-gca27transfer RNA cysteine (anticodon GCA) 2747862678678626857Rat
11467847Trnac-gca28transfer RNA cysteine (anticodon GCA) 2847863857378638644Rat
1306967Krba1KRAB-A domain containing 147867238478693984Rat
1561603Zfp467zinc finger protein 46747871647378725829Rat
1549716SspoSCO-spondin47872582978781330Rat
41321371LOC120102263uncharacterized LOC12010226347877653478782054Rat
1598054Zfp862zinc finger protein 86247878383378812884Rat
1303238Atp6v0e2ATPase, H+ transporting V0 subunit e247881577178818919Rat
1561800Lrrc61leucine rich repeat containing 6147883478378854810Rat
1309874Rarres2retinoic acid receptor responder 247885345078856652Rat
2323359LOC100363281hypothetical LOC10036328147886909278879941Rat
1549707Repin1replication initiator 147887991078885143Rat
1304910Zfp775zinc finger protein 77547888794078906196Rat
1559747RGD1559747similar to Zinc finger and SCAN domain containing protein 2 (Zinc finger protein 29)47890699078916716Rat
1564570Gimap8GTPase, IMAP family member 847893100378942491Rat
1549762Gimap9GTPase, IMAP family member 947895745178960284Rat
628765Gimap4GTPase, IMAP family member 447896729778974211Rat
1305041Gimap6GTPase, IMAP family member 647898459778990006Rat
1565750Gimap7GTPase, IMAP family member 747900141679005586Rat
1306777Gimap1GTPase, IMAP family member 147901847379022360Rat
628871Gimap5GTPase, IMAP family member 547902515179031917Rat
708403Tmem176btransmembrane protein 176B47909780879105263Rat
1310725Tmem176atransmembrane protein 176A47910194679109499Rat
61296Aoc1amine oxidase, copper containing 147914312679162705Rat
1587193Dab2ip-ps1DAB2 interacting protein, pseudogene 147916919579175653Rat
11436055LOC108350705amiloride-sensitive amine oxidase [copper-containing]-like47919990379204270Rat
735023Doxl1diamine oxidase-like protein 147921029879213914Rat
40942986LOC120102699small nucleolar RNA SNORA1747921813379218255Rat
735130Doxl2diamine oxidase-like protein 247926559879269204Rat
2323010Aoc1-ps1amine oxidase, copper containing 147927887679279741Rat
708424Svs1seminal vesicle secretory protein 147928623679291261Rat
7661434LOC102546557uncharacterized LOC10254655747932091579325703Rat
71008Gpnmbglycoprotein nmb47934112879362366Rat
1306936Malsu1mitochondrial assembly of ribosomal large subunit 147938196379390786Rat
1306512Igf2bp3insulin-like growth factor 2 mRNA binding protein 347939136779525923Rat
1562563Tra2atransformer 2 alpha47955169979570621Rat
1583234Gemin7l1gem (nuclear organelle) associated protein 7-like 147960077279601543Rat
41214177Ptma-ps6prothymosin alpha, pseudogene 647962340779624816Rat
1561171Ccdc126coiled-coil domain containing 12647962848379649513Rat
6497475Tma7btranslation machinery associated 7B47966151979662021Rat
11412043LOC10835085860S ribosomal protein L17 pseudogene47966458179665197Rat
1563175Fam221afamily with sequence similarity 221, member A47966813079689768Rat
1563352Rps11l1ribosomal protein S11 like 147969844979698925Rat
1564384Stk31serine threonine kinase 3147970147079797085Rat
41158599LOC120102266uncharacterized LOC12010226647983810879844955Rat
41201656LOC120102267uncharacterized LOC12010226747984508279849862Rat
6485532Ywhaq-ps1tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta, pseudogene 147988593579887789Rat
1564712RGD1564712RGD156471247998311480010594Rat
402104314LOC134486578uncharacterized LOC13448657848004560480077033Rat
3197Npyneuropeptide Y48021211180219310Rat
7571074LOC102555694uncharacterized LOC10255569448036993680372327Rat
41298329LOC120102516basic proline-rich protein-like48050346980510582Rat
1311833Pals2protein associated with LIN7 2, MAGUK p55 family member48050429880584951Rat
727871Gsdmegasdermin E48059034480651943Rat
1564287Osbpl3oxysterol binding protein-like 348067738380854169Rat
41162112LOC120102268uncharacterized LOC12010226848085421480866544Rat
402081811LOC134486672uncharacterized LOC13448667248094924180951404Rat
41061164LOC120102676small nucleolar RNA SNORA1748095427680954406Rat
1565415Rpl27al5ribosomal protein L27A like 548096439180964996Rat
2451Cycscytochrome c, somatic48098266780984767Rat
7624339LOC102546410uncharacterized LOC10254641048098497280998292Rat
1563788Spmip4sperm microtubule inner protein 448099414681019062Rat
61815Npvfneuropeptide VF precursor48104312881047045Rat
11401676LOC108350707uncharacterized LOC10835070748112564381126724Rat
1593814Aurka-ps3aurora kinase A, pseudogene 348114219581143639Rat
2319193Rpl36a-ps13ribosomal protein L36A, pseudogene 1348119073181191094Rat
7508808LOC102546824uncharacterized LOC10254682448132610581385481Rat
41052635LOC120102269uncharacterized LOC12010226948144105681447354Rat
401988047LOC134486579uncharacterized LOC13448657948145915081512081Rat
41083837LOC120102163uncharacterized LOC12010216348151936481521991Rat
1592878Cux1-ps1cut-like homeobox 1, pseudogene 148160049881603346Rat
9685082Mir148amicroRNA 148a48166443181664527Rat
7657543LOC102549423uncharacterized LOC10254942348173639981767346Rat
41399556LOC120102270uncharacterized LOC12010227048180289181811495Rat
1307730Nfe2l3NFE2 like bZIP transcription factor 348183740481865258Rat
1310403Hnrnpa2b1heterogeneous nuclear ribonucleoprotein A2/B148186735481875886Rat
1549705Cbx3chromobox 348187615581889912Rat
402274999LOC134486767igE-binding protein-like48192503881930714Rat
1561341Tomm20l2translocase of outer mitochondrial membrane 20 like 248192780781934464Rat
1305782Snx10sorting nexin 1048194326282007667Rat
41025668LOC120102271MICOS complex subunit MIC13-like48195264581955703Rat
41106900LOC120102272uncharacterized LOC12010227248196145782011161Rat
41093189LOC120102273uncharacterized LOC12010227348215519682159389Rat
41305549LOC120102274uncharacterized LOC12010227448215898282162424Rat
401988215LOC134486768uncharacterized LOC13448676848218669282189737Rat
620159Skap2src kinase associated phosphoprotein 248228122182431664Rat
7570592LOC102550087uncharacterized LOC10255008748243164282474002Rat
11420575LOC10835086060S ribosomal protein L31 pseudogene48252250882522897Rat
41099928LOC120102275uncharacterized LOC12010227548252364282538746Rat
11414885Hoxa1homeobox A148258650582589209Rat
7716070Hotairm1Hoxa transcript antisense RNA, myeloid-specific 148258941582592913Rat
11468112Hoxa2homeobox A248259338982597589Rat
1561431Hoxa3homeobox A348259986082643831Rat
7620814Hoxa3l1homeobox A3 like 148260593082623670Rat
40941309LOC120102276uncharacterized LOC12010227648260944382611874Rat
2814Hoxa4homeo box A448262029482622302Rat
10398773Hoxaas3Hoxa cluster antisense RNA 348263187182644571Rat
620609Hoxa5homeo box A548263295882636851Rat
1590236Hoxa6homeobox A648263702482639463Rat
1587253Hoxa7homeobox A748264634282652449Rat
1310001Hoxa9homeobox A948265384782659958Rat
2314882Mir196bmicroRNA 196b48266110182661185Rat
9410935Hoxa10homeobox A1048266220482671490Rat
1564605Hoxa11homeobox A1148267313982676801Rat
1564419Hoxa11-asHOXA11 antisense RNA48267702882680802Rat
1562483Hoxa13homeo box A1348268956682691701Rat
11434685Evx1even-skipped homeobox 148274719282751569Rat
41113909Ndufb4-ps7NADH:ubiquinone oxidoreductase subunit B4, pseudogene 748280483382805403Rat
40974159LOC120102277uncharacterized LOC12010227748290882382911327Rat
41226461LOC120102278uncharacterized LOC12010227848294394782949446Rat
708399Hibadh3-hydroxyisobutyrate dehydrogenase48297975983077819Rat
41150076LOC120102279uncharacterized LOC12010227948300143583057750Rat
402050431LOC134486582uncharacterized LOC13448658248310896483111236Rat
402341968LOC134486581uncharacterized LOC13448658148314963383152463Rat
708579Tax1bp1Tax1 binding protein 148315254983208463Rat
1589007Jazf1JAZF zinc finger 148321005483513790Rat
7551122Srsf7-ps5serine and arginine rich splicing factor 7, pseudogene 548347062483472753Rat
11492396LOC108350711uncharacterized LOC10835071148348428483495865Rat
402379178LOC134486580uncharacterized LOC13448658048352242183553581Rat
40973112LOC120102280uncharacterized LOC12010228048358653883595516Rat
41294070Ckmt1-ps1creatine kinase, mitochondrial 1, pseudogene 148361518983650209Rat
41301986LOC120102651small nucleolar RNA SNORA4848362691583627055Rat
41028316LOC120102281uncharacterized LOC12010228148365603483677361Rat
1566107Creb5cAMP responsive element binding protein 548372358784124786Rat
402002416LOC134486769uncharacterized LOC13448676948414717284151929Rat
1310827TrilTLR4 interactor with leucine-rich repeats48425278184257626Rat
41074832LOC120102667small nucleolar RNA SNORA1748431047184310602Rat
1563609Cpvlcarboxypeptidase, vitellogenic-like48431185384422098Rat
620140Chn2chimerin 248447898984738068Rat
41059633LOC120102282uncharacterized LOC12010228248450849384513539Rat
7593775LOC102553678uncharacterized LOC10255367848470179884706903Rat
1311589Prr15proline rich 1548476235784765403Rat
41347976Eef1b2-ps1eukaryotic translation elongation factor 1 beta 2, pseudogene 148477922884779895Rat
708559Wipf3WAS/WASL interacting protein family, member 348488040384960250Rat
1560999Scrn1secernin 148496245085024577Rat
7685582LOC102553885uncharacterized LOC10255388548502351285045132Rat
1311705Fkbp14FKBP prolyl isomerase 1448503584085051917Rat
1563940Plekha8pleckstrin homology domain containing A848505376585104376Rat
7537419Tomm7-ps3translocase of outer mitochondrial membrane 7, pseudogene 348506909685073959Rat
402327560LOC134486771uncharacterized LOC13448677148509975585110334Rat
1549700Mturnmaturin, neural progenitor differentiation regulator homolog48513782585158790Rat
6500991LOC100909941uncharacterized LOC10090994148520084885205477Rat
402463896LOC134486770uncharacterized LOC13448677048525271985266760Rat
1306645Znrf2zinc and ring finger 248527462685358083Rat
1562269Nod1nucleotide-binding oligomerization domain containing 148539114285442281Rat
41396160LOC120102675small nucleolar RNA SNORA1748544447285444598Rat
1304876Ggctgamma-glutamyl cyclotransferase48545338785459597Rat
402070931LOC134486772uncharacterized LOC13448677248545963385470492Rat
2325113LOC10035961360S ribosomal protein L12-like48547843485482737Rat
1307856Gars1glycyl-tRNA synthetase 148548493985542876Rat
70547Crhr2corticotropin releasing hormone receptor 248555316385596203Rat
402020459LOC134486773uncharacterized LOC13448677348561197885618301Rat
7724284LOC102550746uncharacterized LOC10255074648561990085640848Rat
1597087Inmtindolethylamine N-methyltransferase48564845985652755Rat
1562590Mindy4MINDY lysine 48 deubiquitinase 448568904985797553Rat
2141Aqp1aquaporin 148581278485824964Rat
2688Ghrhrgrowth hormone releasing hormone receptor48583034585863127Rat
7509699LOC102551107uncharacterized LOC10255110748587339885886009Rat
2038Adcyap1r1ADCYAP receptor type I48592417185972973Rat
1562793Neurod6neuronal differentiation 648617690986180155Rat
1561131Itprid1ITPR interacting domain containing 148634546786505820Rat
628647Ppp1r17protein phosphatase 1, regulatory subunit 1748654402486560839Rat
402059593LOC134486774uncharacterized LOC13448677448660037986607072Rat
68332Pde1cphosphodiesterase 1C48662907487108147Rat
40966591Apoo-ps4apolipoprotein O, pseudogene 448664822486648794Rat
41079727Trnas-aga44transfer RNA serine (anticodon AGA) 4448681252186812595Rat
41168976Trnat-agu9transfer RNA threonine (anticodon AGU) 948685662386856697Rat
41243681LOC120102661small nucleolar RNA SNORA1748712194487122077Rat
41177763LOC120102688small nucleolar RNA SNORA1748714355087143675Rat
1565107Rpsa-ps19ribosomal protein SA, pseudogene 1948719771987198657Rat
402323353LOC134486583large ribosomal subunit protein eL8-like48721830087219123Rat
1308655Lsm5LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated48728126087284476Rat
1564615Avl9AVL9 cell migration associated48729106287338537Rat
1310317Kbtbd2kelch repeat and BTB domain containing 248735813387380399Rat
1549757Fkbp9FKBP prolyl isomerase 948743643987486909Rat
1312013Nt5c3a5'-nucleotidase, cytosolic IIIA48749182887534838Rat
1585226Hnrnpa1-ps32heterogeneous nuclear ribonucleoprotein A1, pseudogene 3248754604387548764Rat
1585214Vom1r65vomeronasal 1 receptor 6548756609287575885Rat
11356528LOC108350861glyceraldehyde-3-phosphate dehydrogenase pseudogene48758229787583312Rat
1549708Vom1r67vomeronasal 1 receptor 6748759789987598843Rat
1549744Vom1r66vomeronasal 1 receptor 6648761859387619504Rat
2316407Vom1r-ps69vomeronasal 1 receptor pseudogene 6948765975587660751Rat
1584130Vom1r-ps70vomeronasal 1 receptor pseudogene 7048767319187674101Rat
1549721Vom1r68vomeronasal 1 receptor 6848771074087711651Rat
1549722Vom1r69vomeronasal 1 receptor 6948772474487725652Rat
2323070Selenot-ps1selenoprotein T, pseudogene 148772881187729358Rat
1549710Vom1r70vomeronasal 1 receptor 7048777799587778894Rat
1549777Vom1r71vomeronasal 1 receptor 7148786702287867924Rat
1549709Vom1r72vomeronasal 1 receptor 7248795689587957794Rat
41345109Hsp90aa1-ps7heat shock protein 90 alpha family class A member 1, pseudogene 748796107087962152Rat
1549715Vom1r73vomeronasal 1 receptor 7348801494088015857Rat
1582950Vom1r-ps71vomeronasal 1 receptor pseudogene 7148804366688044563Rat
6487873Tubg1-ps2tubulin, gamma 1, pseudogene 248804628788047612Rat
1549695Vom1r74vomeronasal 1 receptor 7448807395288074863Rat
11405111Vom1r75vomeronasal 1 receptor 7548808679388087725Rat
1549714Vom1r76vomeronasal 1 receptor 7648811198288112881Rat
1597453Hsp90aa1-ps1heat shock protein 90 alpha family class A member 1, pseudogene 148812123188126630Rat
1359218Vom1r77vomeronasal 1 receptor 7748813156388132480Rat
9351699LOC10369489440S ribosomal protein S6 pseudogene48815005288150849Rat
9290612LOC10369214440S ribosomal protein S6 pseudogene48817377288175283Rat
1549704Vom1r78vomeronasal 1 receptor 7848820221288203129Rat
1359257Vom1r79vomeronasal 1 receptor 7948824093188241842Rat
1549747Vom1r80vomeronasal 1 receptor 8048828509788285996Rat
1587250Tubg1-ps4tubulin, gamma 1, pseudogene 448828754588288983Rat
1549765Vom1r81vomeronasal 1 receptor 8148830733188308263Rat
1596167Vom1r-ps72vomeronasal 1 receptor pseudogene 7248834169188342598Rat
1549746Vom1r82vomeronasal 1 receptor 8248837890588379801Rat
1560845Vom1r-ps73vomeronasal 1 receptor pseudogene 7348839595988396493Rat
1549731Vom1r83vomeronasal 1 receptor 8348844409888445006Rat
1549753Vom1r84vomeronasal 1 receptor 8448846623688467144Rat
1549732Vom1r85vomeronasal 1 receptor 8548849112188492029Rat
1549696Vom1r86vomeronasal 1 receptor 8648852868588529593Rat
1587190Vom1r-ps74vomeronasal 1 receptor pseudogene 7448856166488562558Rat
1549756Vom1r87vomeronasal 1 receptor 8748858568588586593Rat
1596849Vom1r-ps111vomeronasal 1 receptor pseudogene 11148863716088638068Rat
1549699Vom1r88vomeronasal 1 receptor 8848867709488677987Rat
1306494Vopp1VOPP1 WW domain binding protein48869278488762903Rat
1310809Lancl2LanC like glutathione S-transferase 248877197488813920Rat
1565524PyurfPIGY upstream open reading frame48883200888835643Rat
1561739Herc6HECT and RLD domain containing E3 ubiquitin protein ligase family member 648885461288897043Rat
1563162Rps7-ps20ribosomal protein S7, pseudogene 2048892291888932181Rat
1308501Ppm1kprotein phosphatase, Mg2+/Mn2+ dependent, 1K48894222688969139Rat
402265510LOC134486584uncharacterized LOC13448658448897126889006347Rat
631345Abcg2ATP binding cassette subfamily G member 248900605689132915Rat
41258840U6l8U6 spliceosomal RNA like 848917620589176311Rat
402242749LOC134486585uncharacterized LOC13448658548918399589191292Rat
1587249Ppid-ps16peptidylprolyl isomerase D, pseudogene 1648918542789186999Rat
41250383LOC120102287uncharacterized LOC12010228748927208689282281Rat
1307803Herc3HECT and RLD domain containing E3 ubiquitin protein ligase 348928237489372656Rat
1584123Nap1l5nucleosome assembly protein 1-like 548935283489354704Rat
1309807Fam13afamily with sequence similarity 13, member A48938668589485940Rat
41392412LOC120102697small nucleolar RNA SNORA1748957079789570927Rat
1593482Acbd5-ps1acyl-CoA binding domain containing 5, pseudogene 148959779189744999Rat
1559612Tigd2tigger transposable element derived 248974451689747608Rat
402099541LOC134486586sentrin-specific protease 6-like48988192789884378Rat
2322105Senp6-ps1SUMO specific peptidase 6, pseudogene 148988192789885851Rat
1565690Gprin3GPRIN family member 348990219889987496Rat
402022896LOC134486587uncharacterized LOC13448658749009269490093568Rat
11451272LOC108350862uncharacterized LOC10835086249009283990110186Rat
41381715LOC120102288uncharacterized LOC12010228849077253790805718Rat
402095552LOC134486673uncharacterized LOC13448667349086926990872064Rat
402114732LOC134486775uncharacterized LOC13448677549089637690903154Rat
3729Sncasynuclein alpha49102647491127444Rat
1591097Eno1-ps7enolase 1, pseudogene 749120260591203901Rat
1587248Mmrn1multimerin 149120546291280862Rat
2321912Ppp6c-ps1protein phosphatase 6, catalytic subunit, pseudogene 149130052491327307Rat
41044388LOC120102751U2 spliceosomal RNA49148117791481368Rat
1565731Ccser1coiled-coil serine-rich protein 149148389692720439Rat
41195085LOC120102492uncharacterized LOC12010249249214591592261484Rat
11440908LOC108350839high mobility group protein B1-like49263667992646909Rat
402179802LOC134486691developmental pluripotency-associated protein 2-like49265051292651714Rat
40994091Paics-ps3phosphoribosylaminoimidazole carboxylase and phosphoribosylaminoimidazolesuccinocarboxamide synthase, pseudogene 349297709192978067Rat
41059287LOC120102620U7 small nuclear RNA49304694293047006Rat
402062011LOC134486588uncharacterized LOC13448658849323688693301024Rat
620960Hint1-ps1histidine triad nucleotide binding protein 1, pseudogene 149343094793431521Rat
9264819Tshr-ps1thyroid stimulating hormone receptor, pseudogene 149347260993473091Rat
68368Grid2glutamate ionotropic receptor delta type subunit 249374516595222354Rat
41193354LOC120102493uncharacterized LOC12010249349462172994629494Rat
40926323LOC120102600U6 spliceosomal RNA49495411694954222Rat
41104383LOC120102494uncharacterized LOC12010249449522234595241758Rat
1565171Atoh1atonal bHLH transcription factor 149524193395244028Rat
41221465LOC120102615U7 small nuclear RNA49539083495390896Rat
40929032LOC120102616U7 small nuclear RNA49539098295391043Rat
1588783Ptma-ps1prothymosin alpha, pseudogene 149539525995395591Rat
41255876LOC120102647small nucleolar RNA SNORA4849547474495474887Rat
1587189Nono-ps10non-POU domain containing, octamer-binding, pseudogene 1049548725195488605Rat
1309640Smarcad1SNF2 related chromatin remodeling ATPase with DExD box 149563972295709055Rat
69251Hpgdshematopoietic prostaglandin D synthase49569826595727733Rat
402305742LOC134486776oxidized purine nucleoside triphosphate hydrolase-like49571150795718227Rat
9386529Ywhaq-ps4tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta, pseudogene 449582088895821633Rat
1560028Qrfprlpyroglutamylated RFamide peptide receptor like49600813496086800Rat
402252747LOC134486777uncharacterized LOC13448677749611788496126042Rat
1588732Tnip3TNFAIP3 interacting protein 349619701996237357Rat
1311080Ndnfneuron-derived neurotrophic factor49627414796311624Rat
40991721LOC120102726small nucleolar RNA SNORA1749632287196322972Rat
41386173Trnal-aag20transfer RNA leucine (anticodon AAG) 2049636423996364320Rat
1588700Prdm5PR/SET domain 549640549296567647Rat
735071RSA-14-44RSA-14-44 protein49658141196582783Rat
41323200LOC120102581U6 spliceosomal RNA49661457696614682Rat
1307592Lin28clin-28 homolog C (C. elegans)49674731696750247Rat
1587188Eif4g1-ps3eukaryotic translation initiation factor 4 gamma 1, pseudogene 349692000896922336Rat
1587548Havcr1-ps1hepatitis A virus cellular receptor 1, pseudogene 149696270696963021Rat
1564699Hmgb1-ps19high-mobility group box 1, pseudogene 1949707252797167014Rat
41328136LOC120102650small nucleolar RNA SNORA4849715626497156403Rat
1310889Mad2l1mitotic arrest deficient 2 like 149723641997247603Rat
1359215Vom1r89vomeronasal 1 receptor 8949727164997273299Rat
621516Gng12G protein subunit gamma 1249734083097464422Rat
2654Gadd45agrowth arrest and DNA-damage-inducible, alpha49748449797486799Rat
6488311LOC100912188uncharacterized LOC10091218849748619197534165Rat
619907Serbp1Serpine1 mRNA binding protein 149773120097748438Rat
41196388LOC120102291uncharacterized LOC12010229149774596297747821Rat
620026Il12rb2interleukin 12 receptor subunit beta 249775608997844937Rat
1586368Il23rinterleukin 23 receptor49791023098003759Rat
1359498Tacstd2tumor-associated calcium signal transducer 249803762098039320Rat
41113583LOC120102728small nucleolar RNA SNORA1749814005798140177Rat
41316092LOC120102682small nucleolar RNA SNORA1749818158298181714Rat
41337280LOC120102727small nucleolar RNA SNORA1749821561098215730Rat
11362919Igkvl-ps13immunoglobulin kappa variable like, pseudogene 1349829823298299135Rat
41059548LOC120102691small nucleolar RNA SNORA1749831959998319729Rat
41107960LOC120102702small nucleolar RNA SNORA1749832997498330105Rat
41251011LOC120102700small nucleolar RNA SNORA1749842654698426678Rat
9438141Igkvl8immunoglobulin kappa variable like 849844539398448746Rat
41170451LOC120102696small nucleolar RNA SNORA1749846048298460619Rat
41215295LOC120102732small nucleolar RNA SNORA1749848451998484639Rat
41112623LOC120102736small nucleolar RNA SNORA1749850466598504758Rat
40942068LOC120102704small nucleolar RNA SNORA1749855929098559422Rat
9102747Igkvl-ps16immunoglobulin kappa variable like, pseudogene 1649867862798679395Rat
40977765LOC120102731small nucleolar RNA SNORA1749881011998810220Rat
11364654Igkvl-ps17immunoglobulin kappa variable like, pseudogene 1749882453198825017Rat
9439280Igkvl9immunoglobulin kappa variable like 949890250798903005Rat
40936449LOC120102716small nucleolar RNA SNORA1749890625798906388Rat
402108501LOC134486778homeobox protein 14-like49911369899122791Rat
2322825Igkv2-112l1immunoglobulin kappa variable 2-112 like 149913898499139968Rat
9330732Ndufb3l1NADH:ubiquinone oxidoreductase subunit B3 like 149915794999158718Rat
11052016Igkvl10immunoglobulin kappa variable like 1049924606399247077Rat
41045910LOC120102715small nucleolar RNA SNORA1749929942399299549Rat
6495277Igkvl12immunoglobulin kappa variable like 1249933078199331673Rat
41327009LOC120102729small nucleolar RNA SNORA1749933375899333884Rat
1561722Igkvl2immunoglobulin kappa variable like 249946030499461192Rat
41094682LOC120102721small nucleolar RNA SNORA1749946327699463403Rat
41353377LOC120102733small nucleolar RNA SNORA1749956833199568433Rat
41169229LOC120102722small nucleolar RNA SNORA1749959268999592816Rat
402069906LOC134486781uncharacterized LOC13448678149973400099742093Rat
41125163LOC120102717small nucleolar RNA SNORA1749982341499823540Rat
41253364LOC120102725small nucleolar RNA SNORA1749991347799913609Rat
11051993Igkvl-ps11immunoglobulin kappa variable like, pseudogene 1149991813199919062Rat
402320942LOC134486779immunoglobulin kappa variable 1-39-like4100014700100015225Rat
41365694Igkvl-ps7immunoglobulin kappa variable like, pseudogene 74100095095100095843Rat
402183266LOC134486780uncharacterized LOC1344867804100132009100134387Rat
41263518Igkvl-ps5immunoglobulin kappa variable like, pseudogene 54100284996100285627Rat
41075263Igkvl-ps6immunoglobulin kappa variable like, pseudogene 64100470578100471209Rat
41277236LOC120102585U6 spliceosomal RNA4100601828100601932Rat
402349859LOC134486782uncharacterized LOC1344867824100603983100614051Rat
41180823LOC120102592U6 spliceosomal RNA4100625833100625937Rat
41205249Rnu6-936RNA, U6 small nuclear 9364100656443100656547Rat
41120707LOC120102598U6 spliceosomal RNA4100675372100675475Rat
40974521LOC120102579U6 spliceosomal RNA4100709716100709820Rat
41114178LOC120102583U6 spliceosomal RNA4100724768100724872Rat
41107864LOC120102589U6 spliceosomal RNA4100746119100746223Rat
41033320LOC120102595U6 spliceosomal RNA4100765487100765591Rat
41049106Igkvl-ps15immunoglobulin kappa variable like, pseudogene 154100778854100779353Rat
40946187Igkvl-ps3immunoglobulin kappa variable like, pseudogene 34100796510100797012Rat
40961802LOC120102590U6 spliceosomal RNA4100802274100802378Rat
41270403Igkvl-ps4immunoglobulin kappa variable like, pseudogene 44100819395100819856Rat
2320855Mak16-ps1MAK16 homolog, pseudogene 14100820516100825636Rat
2323358Igkvl3immunoglobulin kappa variable like 34100845789100846334Rat
40952956Arpc5l-ps4actin related protein 2/3 complex, subunit 5-like, pseudogene 44100879264100880401Rat
41362761Igkvl-ps8immunoglobulin kappa variable like, pseudogene 84100987762100988271Rat
11051991Igkvl-ps10immunoglobulin kappa variable like, pseudogene 104101220179101221286Rat
2321092Igkvl1immunoglobulin kappa variable like 14101398022101398678Rat
2320327Igkvl-ps21immunoglobulin kappa variable like, pseudogene 214101665010101665645Rat
7521956Znf431l-ps5zinc finger protein 431 like, pseudogene 54101666125101675786Rat
2319569Igkvl14immunoglobulin kappa variable like 144101943829101944555Rat
1561547Igkvl16immunoglobulin kappa variable like 164101967681101968350Rat
402198614LOC134486784Ig kappa chain V-V region L7-like4102186387102193360Rat
11383082Igkvl-ps19immunoglobulin kappa variable like, pseudogene 194102286037102286593Rat
41136119LOC120102301uncharacterized LOC1201023014102294453102337997Rat
11458713Igkvl-ps2immunoglobulin kappa variable like, pseudogene 24102325094102325592Rat
11051990Igkvl-ps1immunoglobulin kappa variable like, pseudogene 14102450761102451362Rat
402391924LOC134486785uncharacterized LOC1344867854102502430102507658Rat
11051998Igkvl-ps18immunoglobulin kappa variable like, pseudogene 184102553426102554428Rat
2324539Igkcl1immunoglobulin kappa constant like 14102615848102616432Rat
1587247Fbl-ps5fibrillarin, pseudogene 54102688835102689607Rat
11051987Igkvl-ps20immunoglobulin kappa variable like, pseudogene 204102745735102746692Rat
1588449C17h6orf62-ps1similar to human chromosome 6 open reading frame 62, pseudogene 14102808588102809193Rat
41305950LOC120102564U6 spliceosomal RNA4102836240102836346Rat
402053242LOC134486789immunoglobulin kappa variable 1-39-like4102847351102848089Rat
620468Igkv28immunoglobulin kappa chain variable 284102852907102853451Rat
1592227Eif5-ps10eukaryotic translation initiation factor 5, pseudogene 104102913588102915087Rat
41091703Fbl-ps4fibrillarin, pseudogene 44102966552102967559Rat
2318882Igkvl13immunoglobulin kappa variable like 134102982819102983403Rat
41381944LOC120102305uncharacterized LOC1201023054102987204102995844Rat
2319042Igkv5-45l1immunoglobulin kappa chain variable 5-45 like 14103028717103029378Rat
1586004Fbl-ps6fibrillarin, pseudogene 64103060662103061952Rat
11497379Igkvl4immunoglobulin kappa variable like 44103195320103195700Rat
9252629Igkvl-ps12immunoglobulin kappa variable like, pseudogene 124103276301103281301Rat
1586003Igkvl5immunoglobulin kappa variable like 54103355853103356655Rat
11052049Igkv8-30l1immunoglobulin kappa chain variable 8-30 like 14103388274103389121Rat
1563231Igkv2-112l2immunoglobulin kappa variable 2-112 like 24103444658103445307Rat
402067271LOC134486676ARL14 effector protein-like4103463801103464061Rat
402401202LOC134486798immunoglobulin kappa chain variable 6-17-like4103538575103539525Rat
402424645LOC134486677ARL14 effector protein-like4103558636103558896Rat
402354537LOC134486887ARL14 effector protein-like4103853859103854338Rat
1564696Igkvl6immunoglobulin kappa variable like 64103863018103863782Rat
2321310Igkvl11immunoglobulin kappa variable like 114103902453103903100Rat
1597311Gtdc1-ps1glycosyltransferase-like domain containing 1, pseudogene 14104002532104003843Rat
2320908Igkvl7immunoglobulin kappa variable like 74104005619104006288Rat
41008980LOC120102656small nucleolar RNA SNORA484104130385104130528Rat
7706369Hdac2-ps1histone deacetylase 2, pseudogene 14104182485104183834Rat
41213638LOC120102652small nucleolar RNA SNORA484104233617104233760Rat
1311377Rpiaribose 5-phosphate isomerase A4104282081104307732Rat
41120297LOC120102574U6 spliceosomal RNA4104293987104294091Rat
7583063LOC102549525uncharacterized LOC1025495254104361149104363799Rat
70884Eif2ak3eukaryotic translation initiation factor 2 alpha kinase 34104363838104425271Rat
402284252LOC134486589signal peptidase complex subunit 2-like4104427314104433412Rat
1562720Spmip9sperm microtubule inner protein 94104444049104451286Rat
1561816Foxi3forkhead box I34104491834104496008Rat
41364677LOC120102648small nucleolar RNA SNORA484104536480104536623Rat
41236250LOC120102679U1 spliceosomal RNA4104569589104569745Rat
1309144Thnsl2threonine synthase-like 24104671305104691084Rat
2590Fabp1fatty acid binding protein 14104744302104753119Rat
1305105Smyd1SET and MYND domain containing 14104757281104811307Rat
7727476LOC102549052low molecular weight phosphotyrosine protein phosphatase-like4104806336104809700Rat
40934091Trnaa-agctransfer RNA alanine (anticodon AGC)4104816704104816785Rat
1306495Krcc1lysine-rich coiled-coil 14104819958104832987Rat
7647571Zmat1l1zinc finger, matrin-type 1 like 14104846130104855948Rat
402363660LOC134486799uncharacterized LOC1344867994104868960104872516Rat
2317Cd8bCD8 subunit beta4104870911104886838Rat
1587245Tuba1b-ps8tubulin, alpha 1B, pseudogene 84104898706104899960Rat
2316Cd8aCD8 subunit alpha4104924116104928353Rat
1309766Rmnd5arequired for meiotic nuclear division 5 homolog A4104934160104991088Rat
40952747Trnas-aga32transfer RNA serine (anticodon AGA) 324104954737104954810Rat
620586Rnf103ring finger protein 1034105084762105100839Rat
708556Chmp3charged multivesicular body protein 34105134860105180862Rat
708351Kdm3alysine demethylase 3A4105189208105233526Rat
1305230Reep1receptor accessory protein 14105303974105420611Rat
402037677LOC134486590uncharacterized LOC1344865904105310374105321514Rat
1307065Mrpl35mitochondrial ribosomal protein L354105424076105431844Rat
1310684Immtinner membrane mitochondrial protein4105438657105477370Rat
1565582Ptcd3Pentatricopeptide repeat domain 34105480699105508007Rat
41156854Snord94small nucleolar RNA, C/D box 944105482586105482722Rat
620824Polr1aRNA polymerase I subunit A4105508305105572272Rat
2319759Tmem94-ps1transmembrane protein 94, pseudogene 14105601892105604245Rat
41152181LOC120102169uncharacterized LOC1201021694105656546105666004Rat
7553872LOC102556495uncharacterized LOC1025564954105690034105692725Rat
620875St3gal5ST3 beta-galactoside alpha-2,3-sialyltransferase 54105692840105750774Rat
41176189LOC120102561U6 spliceosomal RNA4105715125105715231Rat
7524413LOC102546367uncharacterized LOC1025463674105725021105727545Rat
1561512Atoh8atonal bHLH transcription factor 84105818203105850379Rat
41062867LOC120102308uncharacterized LOC1201023084105842170105879695Rat
621700Sftpbsurfactant protein B4105917495105926631Rat
1308103Usp39ubiquitin specific peptidase 394105932140105964551Rat
1587471C4h2orf68similar to human chromosome 2 open reading frame 684105960543105966509Rat
619998Tmem150atransmembrane protein 150A4105968526105972822Rat
1359698Rnf181ring finger protein 1814105972778105979624Rat
620419Vamp5vesicle-associated membrane protein 54105982004105993247Rat
620421Vamp8vesicle-associated membrane protein 84106000570106011081Rat
402348482LOC134486592uncharacterized LOC1344865924106005537106013719Rat
68383Ggcxgamma-glutamyl carboxylase4106027918106043653Rat
402097792LOC134486591uncharacterized LOC1344865914106031130106038571Rat
619985Mat2amethionine adenosyltransferase 2A4106048043106053612Rat
11355186LOC108350864ATP synthase subunit g, mitochondrial pseudogene4106113312106113703Rat
1587427Sh2d6SH2 domain containing 64106124378106132337Rat
1311724Capgcapping actin protein, gelsolin like4106152912106170010Rat
41109258Trnap-agg74transfer RNA proline (anticodon AGG) 744106157122106157202Rat
1306408Elmod3ELMO domain containing 34106172819106211286Rat
628802Retsatretinol saturase4106211459106220222Rat
620445Tgoln2trans-golgi network protein 24106221503106229360Rat
1311671Tcf7l1transcription factor 7 like 14106238892106404012Rat
7699711LOC102549526uncharacterized LOC1025495264106244380106245811Rat
7562795LOC102549458uncharacterized LOC1025494584106325447106327864Rat
1591490Kcmf1potassium channel modulatory factor 14106447974106508359Rat
41358316LOC120102632small nucleolar RNA SNORA36 family4106453768106453890Rat
41116383LOC120102170thymosin beta-10-like4106520947106521414Rat
41083750LOC120102310uncharacterized LOC1201023104106542179106556398Rat
62022Tmsb10thymosin, beta 104106568080106569210Rat
41323307LOC120102777U4 spliceosomal RNA4106596171106596238Rat
621797Dnah6dynein, axonemal, heavy chain 64106622235106842461Rat
7639290Phb1-ps4prohibitin 1, pseudogene 44106640506106642978Rat
41389009LOC120102554U4 spliceosomal RNA4106806266106806423Rat
41141586LOC120102311uncharacterized LOC1201023114106842471106852282Rat
619821Suclg1succinate-CoA ligase GDP/ADP-forming subunit alpha4106866329106895686Rat
1334150Or6c235-ps1olfactory receptor family 6 subfamily C member 235, pseudogene 14107037348107038214Rat
1562515JkamplJNK1/MAPK8 associated membrane protein like4107078531107079631Rat
1586033Ptbp1-ps3polypyrimidine tract binding protein 1, pseudogene 34107254776107256809Rat
11472949LOC108350866uncharacterized LOC1083508664107515427107539924Rat
1586032Shc1-ps1SHC adaptor protein 1, pseudogene 14107547446107549983Rat
41373605LOC120102663small nucleolar RNA SNORA174108052623108052754Rat
41121066Fam50a-ps1family with sequence similarity 50, member A, pseudogene 14108166459108167658Rat

Markers in Region
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolExpected SizeChrStartStopSpeciesMatch
10144D4Mgh1623946390045863900697Ratregion
10145D4Arb1039446390040663900800Ratregion
10782D4Mit81044104243144104243248Ratregion
11009D4Wox2113548021363480213769Ratregion
11010D4Hri112648021363480213760Ratregion
11012D4Wox2214848021680480216952Ratregion
11013D4Arb729048021668280216972Ratregion
11014D4Mit729948021670580217004Ratregion
11172D4Wox2418547132870171328886Ratregion
11174D4Mgh3240447124545371245857Ratregion
11176D4Wox2316947124911671249285Ratregion
33905D4Mit1127449269051992690793Ratregion
34230D4Mgh2413047572605875726188Ratregion
33711D4Mit512147416981374169934Ratregion
37438D4Rat11923346506096065061193Ratregion
35260D4Rat2216546324502663245191Ratregion
35286D4Rat3714249463821494638356Ratregion
35409D4Rat3419148670964986709840Ratregion
36852D4Rat1816146719676767196928Ratregion
36870D4Rat3315548233676582336920Ratregion
36938D4Rat2915647701337477013530Ratregion
36978D4Rat3814149718292097183061Ratregion
37012D4Rat2511746796011267960229Ratregion
37026D4Rat2711747350049073500607Ratregion
37646D4Rat10813848417451084174648Ratregion
37650D4Rat11022749232054992320776Ratregion
37906D4Rat12720348067100880671211Ratregion
36462D4Rat3622949560677995607008Ratregion
36741D4Rat3117247641093976411111Ratregion
34791D4Rat7515447842229478422448Ratregion
34845D4Rat1913147271134872711479Ratregion
35092D4Rat2112046350726663507386Ratregion
35673D4Rat391594104539502104539661Ratregion
35675D4Rat2812547699103876991163Ratregion
35721D4Rat7619848658398086584178Ratregion
35817D4Rat401474106848959106849106Ratregion
39790D4Rat21316747582561775825784Ratregion
38104D4Rat11824846668438166684629Ratregion
38310D4Rat13516246668774566687907Ratregion
40586D4Rat23122248998680889987030Ratregion
40620D4Rat22615546380492263805077Ratregion
40640D4Rat17125048954711589547365Ratregion
40698D4Rat16324747470369674703943Ratregion
38656D4Rat12814448131760081317744Ratregion
38728D4Rat12225346692489866925151Ratregion
40006D4Rat21417047891110678911276Ratregion
40020D4Rat17316249381944993819611Ratregion
39104D4Rat969846757634967576447Ratregion
39266D4Rat10225646835356768353823Ratregion
39520D4Rat17024348556664585566888Ratregion
42164D4Arb2925346549585165496104Ratregion
42168D4Arb3013847593985875939996Ratregion
42170D4Arb3417447022701170227185Ratregion
42172D4Arb3514748021363280213779Ratregion
42174D4Arb3617047124911571249285Ratregion
42176D4Arb3710346391369063913793Ratregion
42178D4Arb3817847132870871328886Ratregion
42306D4Rat26614948605892886059077Ratregion
42307D4Rat28419448983204789832241Ratregion
41182D4Rat16813847933541479335552Ratregion
41200D4Rat16918848294489582945083Ratregion
41336D4Rat16417947499808674998265Ratregion
42692D4Rat25924546598291765983162Ratregion
42696D4Rat25722546383612063836345Ratregion
42697D4Rat25621846440241164402629Ratregion
42700D4Rat22924047842908678429326Ratregion
42703D4Rat26319847704745477047652Ratregion
42705D4Rat26522248433783384338055Ratregion
42707D4Rat23024248886229688862538Ratregion
42709D4Rat2672314107088750107088981Ratregion
42485D1Rat41528847940246479402752Ratregion
40932D4Rat16620248092630080926502Ratregion
41124D4Rat16221347066256470662777Ratregion
41126D4Rat16715147880379578803946Ratregion
43807D4Got4822646776724267767468Ratregion
43814D4Got5916147868763078687791Ratregion
43816D4Got6420348298619782986400Ratregion
43818D4Got6214648113254381132689Ratregion
43819D4Got6617648413348284133658Ratregion
60806D4Wox713147375268073752811Ratregion
60444D4Got5319147711235377112544Ratregion
60450D4Got6823049145907291459302Ratregion
60453D4Got7110549145906791459172Ratregion
60454D4Got7227149211307192113342Ratregion
60459D4Got7810549787030997870414Ratregion
69532D4Uwm313446530019365300327Ratregion
61302D4Arb241314108224262108224393Ratregion
62480D4Uia218247033107270331254Ratregion
62509D4Uia732248961217489612496Ratregion
738060D4Rhw310547899947378999578Ratregion
738062D4Rhw737247927380979274181Ratregion
66669D4Mco222748111945881119685Ratregion
66675D4Mco51004106141149106141249Ratregion
1631514D4Got21118648177604381776229Ratregion
1627601D4Got20820646918071469180920Ratregion
1628130D4Got27913547542951575429650Ratregion
1641131D4Got21219648283470782834903Ratregion
1641721D4Got31213049751338197513511Ratregion
1639783D4Got30921749995831299958529Ratregion
1635287D4Got2472884102645890102646178Ratregion
1635866D4Got20718647306522773065413Ratregion
1638049D4Got2161134103031562103031675Ratregion
5031376PMC153617P199149102703991028030Ratregion
5026388RH13201420547902226779022472Ratregion
5029563BE09550915346826873468268887Ratregion
5034896AI17837535447826648178266835Ratregion
5028171D14Mit2929948021670580217004Ratregion
5051200RH13449718648320803983208225Ratregion
5057302AI55658118049570482895705008Ratregion
5055187RH14365611148912614989126260Ratregion
5058728BI28451563547929057979291214Ratregion
5059890AI07201628947885351478853803Ratregion
5045346RH13112567447901851279019186Ratregion
5041506RH12889621246831421368314425Ratregion
5045772RH1313702224105750406105750628Ratregion
5048714RH13306356749564206495642631Ratregion
5045160RH13101860446880330268803906Ratregion
5047662RH13245620346802956668029769Ratregion
5049772RH13367349247175794771758439Ratregion
5042960RH12974721048227960082279810Ratregion
5074280RH13792518748877202088772207Ratregion
5077336RH13969874548520481385205558Ratregion
5079006RH1406799064105982285105983191Ratregion
5078320RH14027260747932124379321850Ratregion
5074020RH13777313046929725669297386Ratregion
5066796AU04814631546424579364246108Ratregion
5066844AU04811725449542136595421619Ratregion
5070277RH945749948021917680219275Ratregion
5070360AV27746613547216794772168082Ratregion
5069342AU0465601524105193597105193749Ratregion
5062496BF39799612948075950980759638Ratregion
5060250BI27998369947929051579291214Ratregion
5062822AW52837318548187724981877434Ratregion
5082187BI28045063147929058379291214Ratregion
5082471BF41606225846893308268933340Ratregion
5089745AU04933815347715904277159195Ratregion
5087897Grid212949518553095185659Ratregion
5084168AI40852836247886837378868735Ratregion
5084730AI17794412147076370170763822Ratregion
5084344AI23371918447056839470568578Ratregion
5088759AU0487601884104588464104588652Ratregion
5090215AU0496192704105193552105193822Ratregion
5089003AU04889715946407679164076950Ratregion
5082595BE11981315249150653691506688Ratregion
5084510AI40975519848937206689372264Ratregion
5082921BF39041715448318835883188512Ratregion
5086735AA81915414946626111666261265Ratregion
5086843AA81923221248735832687358538Ratregion
5085988AW53595220046913647769136677Ratregion
5503105CRHR253948555551385556052Ratregion
5504296D7S2119E10647000211270002218Ratregion
5504408PMC196178P12474104255686104255933Ratregion
5499601MARC_1211-1212:991931105:137648186934681869722Ratregion
5500747UniSTS:5764934448263281282633156Ratregion
5501691CHRM259446611106666111660Ratregion
5502766RPIA7484104290079104290827Ratregion
5507355REN10051225748263281482633071Ratregion
5507371REN10064223248266195182662183Ratregion
5507379REN10077122648269095082691176Ratregion
Position Markers

Flank 1: (D4Arb21)
Rat AssemblyChrPosition (strand)Source
mRatBN7.24103,194,656 - 103,194,936 (+)MAPPER
Rnor_6.0499,066,823 - 99,067,102NCBI
Rnor_5.04163,843,971 - 163,844,250UniSTS
RGSC_v3.44104,415,843 - 104,416,123RGD
RGSC_v3.44104,415,844 - 104,416,123UniSTS
RGSC_v3.14104,660,324 - 104,660,604RGD
Celera492,370,590 - 92,370,869UniSTS
Cytogenetic Map4q32UniSTS
Flank 2: (D4Arb24)
Rat AssemblyChrPosition (strand)Source
GRCr84108,224,262 - 108,224,393 (+)Marker Load Pipeline
Cytogenetic Map4 RGD


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1582232Gluco25Glucose level QTL 253.60.0023blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)486583980149763391Rat
631689Scl4Serum cholesterol level QTL 41.90.008blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)496731383141731383Rat
1358352Srcrt3Stress Responsive Cort QTL 32.29blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)439431983123203361Rat
1549843Bw53Body weight QTL 530.0001body mass (VT:0001259)body weight gain (CMO:0000420)459753119104753119Rat
61445Strs3Sensitivity to stroke QTL 33cerebrum integrity trait (VT:0010549)post-insult time to onset of cerebrovascular lesion (CMO:0002343)44140057786400577Rat
6893678Bw108Body weight QTL 1082.60.006body mass (VT:0001259)body weight (CMO:0000012)44442502489425024Rat
1578655Bmd11Bone mineral density QTL 1111femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)492406430137406430Rat
1357342Bw40Body weight QTL 400.001body mass (VT:0001259)body weight (CMO:0000012)474233320119233320Rat
631556Bp135Blood pressure QTL 1350.017arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)480212111119233320Rat
1358363Sradr3Stress Responsive Adrenal Weight QTL 36.19adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)458817672103817672Rat
61330Eau1Experimental allergic uveoretinitis QTL 10.0003uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)426234499134199155Rat
70167Bw22Body weight QTL 223.1body mass (VT:0001259)body weight (CMO:0000012)474233320119233320Rat
737821Hcar9Hepatocarcinoma resistance QTL 93.7liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)4106848959168870974Rat
731165Uae21Urinary albumin excretion QTL 212.40.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)4108206096153206096Rat
61336Bp21Blood pressure QTL 214.6arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)45808014680212111Rat
1549839Bw52Body weight QTL 520.0001body mass (VT:0001259)body weight gain (CMO:0000420)471647492116647492Rat
2313401Anxrr27Anxiety related response QTL 27aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)41890069763900697Rat
70177Xhs1X-ray hypersensitivity QTL 125.1intestine integrity trait (VT:0010554)post-insult time to onset of moribundity (CMO:0001896)482944895154403548Rat
6909128Pancm4Pancreatic morphology QTL 411.35pancreas mass (VT:0010144)pancreas wet weight (CMO:0000626)427862204126119996Rat
61475Aia2Adjuvant induced arthritis QTL 25.8joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)44047145375939996Rat
8694439Bw168Body weight QTL 1689.570.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)44140060386400603Rat
61476Aia3Adjuvant induced arthritis QTL 33.9joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)475939858140508796Rat
8655906Rf60Renal function QTL 603.8blood creatinine amount (VT:0005328)creatinine clearance (CMO:0000765)43044896182336920Rat
1641919Alc22Alcohol consumption QTL 220.0005drinking behavior trait (VT:0001422)ethanol drink intake rate (CMO:0001407)465060960127749483Rat
2317577Eae24Experimental allergic encephalomyelitis QTL 24nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis severity score (CMO:0001419)46796011273752811Rat
1354660Salc1Saline consumption QTL 111.26drinking behavior trait (VT:0001422)saline drink intake rate (CMO:0001627)445429897149763204Rat
2317587Eae26Experimental allergic encephalomyelitis QTL 26nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis severity score (CMO:0001419)489986808101226978Rat
70192BpQTLcluster5Blood pressure QTL cluster 54.183arterial blood pressure trait (VT:2000000)absolute change in mean arterial blood pressure (CMO:0000533)4163900697Rat
1298082Stresp4Stress response QTL 4blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)451085655113588029Rat
2317586Eae25Experimental allergic encephalomyelitis QTL 259.300000190734863nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis duration (CMO:0001424)48021363484338055Rat
61364Iddm2Insulin dependent diabetes mellitus QTL 2blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)480216705104243248Rat
1578670Bss14Bone structure and strength QTL 1416.4femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)488883695133883695Rat
2317588Eae27Experimental allergic encephalomyelitis QTL 27nervous system integrity trait (VT:0010566)percentage of study population developing experimental autoimmune encephalomyelitis during a period of time (CMO:0001047)469036742114036742Rat
1300139Hrtrt6Heart rate QTL 62.85heart pumping trait (VT:2000009)heart rate (CMO:0000002)440490442117737312Rat
70201Gcr1Gastric cancer resistance QTL 12.7stomach morphology trait (VT:0000470)stomach tumor susceptibility score (CMO:0002043)4103834277148834277Rat
70200Alc18Alcohol consumption QTL 189.2drinking behavior trait (VT:0001422)ethanol intake volume to total fluid intake volume ratio (CMO:0001591)457613339151163960Rat
4889969Bss96Bone structure and strength QTL 964.9tibia size trait (VT:0100001)tibia cortical bone volume (CMO:0001725)457613242102613242Rat
2316958Gluco58Glucose level QTL 5810blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)412212457182430611Rat
4889972Bss97Bone structure and strength QTL 975.6tibia size trait (VT:0100001)tibia total bone volume (CMO:0001724)457613242102613242Rat
6478684Anxrr30Anxiety related response QTL 300.00087defecation behavior trait (VT:0010462)defecation rate (CMO:0000998)464084079109084079Rat
1578662Bss15Bone structure and strength QTL 1519.6femur width (VT:1000666)femoral neck width (CMO:0001695)488883695133883695Rat
5685012Bmd87Bone mineral density QTL 875.1tibia mineral mass (VT:1000283)bone mineral content (CMO:0001554)43511329080113290Rat
2302049Pia32Pristane induced arthritis QTL 325.10.001blood autoantibody amount (VT:0003725)serum immunoglobulin G-type rheumatoid factor level relative to an arbitrary reference serum (CMO:0002112)4107346299152346299Rat
5685009Bmd86Bone mineral density QTL 863.7tibia mineral mass (VT:1000283)bone mineral density (CMO:0001226)457613242102613242Rat
2306794Ean2Experimental allergic neuritis QTL 26.4nervous system integrity trait (VT:0010566)IFNG-secreting splenocyte count (CMO:0002122)48279077797183061Rat
1331807Rf31Renal function QTL 312.988urine potassium amount (VT:0010539)urine potassium level (CMO:0000128)44049044275726188Rat
634311Sach7Saccharin preference QTL 7taste sensitivity trait (VT:0001986)saccharin intake volume to total fluid intake volume ratio (CMO:0001601)45807987582597589Rat
2306547Iddm38Insulin dependent diabetes mellitus QTL 38blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)468353567113353567Rat
738009Sach4Saccharine consumption QTL 44.90.000016consumption behavior trait (VT:0002069)saccharin intake volume to total fluid intake volume ratio (CMO:0001601)460916264184426481Rat
2306545Iddm39Insulin dependent diabetes mellitus QTL 39blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)478687630123687630Rat
631261Tcas3Tongue tumor susceptibility QTL 36.88tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)41170660492690519Rat
6478772Anxrr49Anxiety related response QTL 490.15488defecation behavior trait (VT:0010462)defecation rate (CMO:0000998)464084079109084079Rat
634335Anxrr16Anxiety related response QTL 167.22locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)494638356168870820Rat
631646Stl4Serum triglyceride level QTL 46.50.0001blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)474169813134199155Rat
634334Xhs3X-ray hypersensitivity QTL 310intestine integrity trait (VT:0010554)post-insult time to onset of moribundity (CMO:0001896)486058928131411333Rat
2312569Pur19Proteinuria QTL 193.40.001urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)459836842104836842Rat
8655961Kidm43Kidney mass QTL 4318kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)43726957782269577Rat
61406Scwia1Streptococcal cell wall induced arthritis QTL 12.3joint integrity trait (VT:0010548)experimental arthritis severity measurement (CMO:0001459)475939858140508796Rat
1354612Foco1Food consumption QTL 18.87eating behavior trait (VT:0001431)food intake rate (CMO:0000427)445429897149763204Rat
634344Hcar7Hepatocarcinoma resistance QTL 77.8liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)46104105794638356Rat
2303168Bp330Blood pressure QTL 3304.250.017arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)45889999148002343Rat
61412Pia2Pristane induced arthritis QTL 23.9joint integrity trait (VT:0010548)post-insult time to onset of experimental arthritis (CMO:0001450)42228845363245191Rat
738031Alc14Alcohol consumption QTL 147.60.00003consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)460916264174095838Rat
1576316Ept5Estrogen-induced pituitary tumorigenesis QTL 53.8pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)4100752691179366077Rat
8552807Vie4Viral induced encephalitis QTL 47.3brain integrity trait (VT:0010579)encephalitis incidence/prevalence measurement (CMO:0002361)41890069763900697Rat
631662Hcar2Hepatocarcinoma resistance QTL 23.10.0003liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)484349032129349032Rat
1576305Emca6Estrogen-induced mammary cancer QTL 65.8mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)445429709157555683Rat
61418Pia5Pristane induced arthritis QTL 54.5joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)463245026129846354Rat
631651Bp124Blood pressure QTL 1243arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)464209744109209744Rat
738016Alc16Alcohol consumption QTL 163.60.00015consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)460916264184426481Rat
1558651Swd3Spike wave discharge measurement QTL 34.620.000024brain electrophysiology trait (VT:0010557)brain spike-and-wave discharge frequency (CMO:0001742)44140057786400577Rat
1358202Gluco11Glucose level QTL 112.40.02adipocyte glucose uptake trait (VT:0004185)absolute change in adipocyte glucose uptake (CMO:0000873)486709649168870974Rat
1358203Stl19Serum triglyceride level QTL 192.80.002blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)42192515166925151Rat
1641833Alc21Alcohol consumption QTL 218.60.0001drinking behavior trait (VT:0001422)ethanol drink intake rate (CMO:0001407)457664252127749483Rat
2306899Bp338Blood pressure QTL 3380.071arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)482336765127336765Rat
631546Bp86Blood pressure QTL 863.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)45807987592690793Rat
631674Iddm14Insulin dependent diabetes mellitus QTL 14blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)465495851159259805Rat
6478743Anxrr40Anxiety related response QTL 400.83076defecation behavior trait (VT:0010462)defecation rate (CMO:0000998)464084079109084079Rat
12798523Anxrr56Anxiety related response QTL 562.830.05locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)486583980131583980Rat
61434Cia3Collagen induced arthritis QTL 34.8joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)463224393108224393Rat
7394826Bw126Body weight QTL 1260.002body mass (VT:0001259)body weight gain (CMO:0000420)46390045888813920Rat
12798520Anxrr55Anxiety related response QTL 554.450.01locomotor behavior trait (VT:0001392)number of rearing movements with lid-pushing in an experimental apparatus (CMO:0002715)433538597116185060Rat
631671Iddm11Insulin dependent diabetes mellitus QTL 113.60.0012blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)45960331980216952Rat


Additional Information

Database Acc Id Source(s)
NCBI Gene Cia3


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2006-04-14 Cia3  Collagen induced arthritis QTL 3    Type II Collagen induced arthritis QTL 3  Name updated 1299863 APPROVED

RGD Curation Notes
Note Type Note Reference
qtl_gene whole genome analysis using PGMapper revealed Cxcl12, Aqp1, Il17re, Il17rc as RA associated genes 2300074
qtl_gene 672 known and 251 novel genes were found in an analysis based on PubMed and OMIM data 2307198
qtl_map along with Aia3 and Pia5 is contained within chromosome 4 R2 subcongenic strain DA.PVG.1AV1-(D4Mgh17-D4Rat56) 629560