Bw40 QTL Report (Rattus norvegicus) - Rat Genome Database

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QTL Registration

QTL: Bw40 (Body weight QTL 40) Rattus norvegicus

Symbol: Bw40
Name: Body weight QTL 40
RGD ID: 1357342
Trait: body mass   (VT:0001259)    
Measurement Type: body weight   (CMO:0000012)    
LOD Score: Not Available
P Value: 0.001
Variance: Not Available
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr8474,233,320 - 119,233,320RGD_MAPPER_PIPELINE
mRatBN7.2476,647,384 - 117,676,292RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.0477,307,388 - 116,916,073RGD_MAPPER_PIPELINERnor6.0
Rnor_5.04141,978,848 - 181,496,612RGDRnor5.0
RGSC_v3.4475,732,943 - 119,369,308RGDRGSC3.4
RGSC_v3.1474,613,765 - 119,613,765RGD
Cross Type: Not Available
Strains Crossed: BB/OK BB.SHR-(D4Mit6-Spr)/K 
JBrowse: View Region in Genome Browser (JBrowse)
Model



Npy is a candidate Gene for Bw40
Spr is a candidate Gene for Bw40


  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Bw40Ratobesity  IDA 69707 RGD 

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Bw40Ratincreased body weight  IAGP 69707 RGD 

Clinical Measurement
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Bw40Ratbody weight  IDA 69707 RGD 

Experimental Condition
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Bw40Ratcontrol condition  IDA 69707 RGD 

Measurement Method
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Bw40Ratbody weighing method  IDA 69707 RGD 

Rat Strain
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Bw40RatBB.SHR-(D4Mit6-Spr)/K  IEA 69707 RGD 
Bw40RatBB/OK  IEA 69707 RGD 

Vertebrate Trait
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Bw40Ratbody mass  IDA 69707 RGD 


#
Reference Title
Reference Citation
1. Mapping of quantitative trait loci for body weight on chromosomes 1 and 4 in the rat. Kovacs P and Kloting I, Biochem Mol Biol Int 1998 Feb;44(2):399-405.


1 to 20 of 573 rows
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
1595860Ezh2enhancer of zeste 2 polycomb repressive complex 2 subunit47662439976687362Rat
619835Pdia4protein disulfide isomerase family A, member 447680319876822245Rat
2293500Zfp786zinc finger protein 78647682238376840943Rat
1562129Zfp398zinc finger protein 39847684967276881075Rat
1306278Zfp282zinc finger protein 28247688499676910250Rat
1307836Zfp212Zinc finger protein 21247692363876936076Rat
1304879Zfp956zinc finger protein 95647694323976967238Rat
9367833LOC103692140ATP synthase subunit delta, mitochondrial pseudogene47694416876946742Rat
11410744Trnac-gca1transfer RNA cysteine (anticodon GCA) 147698021376980284Rat
1566056Zfp777zinc finger protein 77747701637777044008Rat
1306209Zfp746zinc finger protein 74647705500877078968Rat
11470191Trnac-gca2transfer RNA cysteine (anticodon GCA) 247712214477122215Rat
11469937Trnac-gca3transfer RNA cysteine (anticodon GCA) 347712755777127628Rat
11368266Trnac-gca4transfer RNA cysteine (anticodon GCA) 447712852177128592Rat
11383953Trnac-gca5transfer RNA cysteine (anticodon GCA) 547713610077136171Rat
11445921Trnac-gca6transfer RNA cysteine (anticodon GCA) 647713711577137186Rat
11466918Trnac-gca7transfer RNA cysteine (anticodon GCA) 747714011377140184Rat
11391872Trnac-gca9transfer RNA cysteine (anticodon GCA) 947716356377163634Rat
11491518Trnac-gca10transfer RNA cysteine (anticodon GCA) 1047717826077178331Rat
11515722Trnac-gca11transfer RNA cysteine (anticodon GCA) 1147718033477180405Rat

1 to 20 of 573 rows
1 to 20 of 626 rows
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Expected Size
Chr
Start
Stop
Species
Match
10525D4Mit311244108086268108086390Ratregion
10560D4Mit121794103194805103194984Ratregion
10561D4Wox201444103194798103194942Ratregion
10562D4Arb212804103194656103194936Ratregion
10782D4Mit81044102684777102684881Ratregion
11009D4Wox2113547888281778882954Ratregion
11010D4Hri112647888281778882945Ratregion
11011D4Mgh420747887850478878711Ratregion
11012D4Wox2214847888598978886137Ratregion
11013D4Arb729047888586778886157Ratregion
11014D4Mit729947888589078886189Ratregion
11015D4Mit2412847888281578882945Ratregion
11229D4Wox281374110891355110891492Ratregion
33905D4Mit1127449136052791360801Ratregion
33991D4Mit282204110275411110275633Ratregion
11381D4Mgh171374114921280114921417Ratregion
11383D4Mit231204114921294114921414Ratregion
33696D4Mit152314113634394113634625Ratregion
36109D4Rat431364115861544115861680Ratregion
36368D4Mit321514116200971116201124Ratregion
1 to 20 of 626 rows

Flank 1: (D4Mit6)
Rat AssemblyChrPosition (strand)Source
mRatBN7.2476,647,384 - 76,647,568 (+)MAPPER
Rnor_6.0477,307,388 - 77,307,571NCBI
Rnor_5.04141,978,848 - 141,979,031UniSTS
RGSC_v3.4475,732,943 - 75,733,127RGD
RGSC_v3.4475,732,944 - 75,733,127UniSTS
Celera471,452,122 - 71,452,305UniSTS
Cytogenetic Map4q24UniSTS
Flank 2: (Spr)
Rat AssemblyChrPosition (strand)Source
GRCr84119,229,447 - 119,233,320 (-)NCBI
mRatBN7.24117,671,948 - 117,676,292 (-)NCBI
mRatBN7.2 Ensembl4117,671,949 - 117,675,678 (-)Ensembl
UTH_Rnor_SHR_Utx4123,153,277 - 123,157,012 (-)NCBI
UTH_Rnor_SHRSP_BbbUtx_1.04118,928,408 - 118,932,143 (-)NCBI
UTH_Rnor_WKY_Bbb_1.04117,541,159 - 117,544,893 (-)NCBI
Rnor_6.04116,912,343 - 116,916,073 (-)NCBI
Rnor_6.0 Ensembl4116,912,351 - 116,916,236 (-)Ensembl
Rnor_5.04181,492,882 - 181,496,612 (-)NCBI
RGSC_v3.44119,365,578 - 119,369,308 (-)NCBI
RGSC_v3.14119,610,075 - 119,613,765 (-)NCBI
Celera4106,655,853 - 106,659,586 (-)NCBI
Cytogenetic Map4q34NCBI


1 to 10 of 94 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1582232Gluco25Glucose level QTL 253.60.0023blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)485253748148090731Rat
631689Scl4Serum cholesterol level QTL 41.90.008blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)495174120140174120Rat
1358352Srcrt3Stress Responsive Cort QTL 32.29blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)438465774146803430Rat
1549843Bw53Body weight QTL 530.0001body mass (VT:0001259)body weight gain (CMO:0000420)461697658103194791Rat
61445Strs3Sensitivity to stroke QTL 33cerebrum integrity trait (VT:0010549)post-insult time to onset of cerebrovascular lesion (CMO:0002343)44043338885433388Rat
6893678Bw108Body weight QTL 1082.60.006body mass (VT:0001259)body weight (CMO:0000012)44345797688457976Rat
1578655Bmd11Bone mineral density QTL 1111femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)490850165135850165Rat
1300116Hrtrt5Heart rate QTL 53.76heart pumping trait (VT:2000009)heart rate (CMO:0000002)4116179486151161268Rat
10755501Bp390Blood pressure QTL 3902.5arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)426775591168368347Rat
1357342Bw40Body weight QTL 400.001body mass (VT:0001259)body weight (CMO:0000012)476647384117676292Rat

1 to 10 of 94 rows


Database
Acc Id
Source(s)
NCBI Gene Bw40

Note Type Note Reference
qtl_general significance was higher in females (p=0.001) than males (p=0.009) 69707