Cd207 (CD207 molecule) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Cd207 (CD207 molecule) Rattus norvegicus
Analyze
Symbol: Cd207
Name: CD207 molecule
RGD ID: 1565913
Description: Predicted to enable carbohydrate binding activity. Predicted to be involved in defense response to virus. Predicted to be active in external side of plasma membrane. Orthologous to human CD207 (CD207 molecule); INTERACTS WITH 1-naphthyl isothiocyanate; bisphenol A; indole-3-methanol.
Type: protein-coding
RefSeq Status: MODEL
Previously known as: C-type lectin domain family 4 member K; CD 207 antigen; CD207 molecule, langerin; LOC502852; RGD1565913; similar to C type lectin
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.24116,155,229 - 116,161,587 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4116,155,212 - 116,161,518 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.04115,333,124 - 115,355,034 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4115,348,491 - 115,354,795 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04179,937,840 - 179,944,063 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44117,866,542 - 117,872,334 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera4105,132,186 - 105,154,079 (-)NCBICelera
Cytogenetic Map4q34NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:11978773   PMID:17334373   PMID:20026605  


Genomics

Comparative Map Data
Cd207
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.24116,155,229 - 116,161,587 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4116,155,212 - 116,161,518 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.04115,333,124 - 115,355,034 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4115,348,491 - 115,354,795 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04179,937,840 - 179,944,063 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44117,866,542 - 117,872,334 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera4105,132,186 - 105,154,079 (-)NCBICelera
Cytogenetic Map4q34NCBI
CD207
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38270,824,130 - 70,835,816 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl270,830,211 - 70,835,816 (-)EnsemblGRCh38hg38GRCh38
GRCh37271,057,342 - 71,062,946 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36270,910,855 - 70,916,461 (-)NCBINCBI36Build 36hg18NCBI36
Build 34270,969,002 - 70,974,608NCBI
Celera270,908,034 - 70,913,641 (-)NCBICelera
Cytogenetic Map2p13.3NCBI
HuRef270,793,731 - 70,799,342 (-)NCBIHuRef
CHM1_1270,986,667 - 70,992,278 (-)NCBICHM1_1
T2T-CHM13v2.0270,841,299 - 70,846,904 (-)NCBIT2T-CHM13v2.0
Cd207
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39683,648,189 - 83,654,839 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl683,648,197 - 83,654,839 (-)EnsemblGRCm39 Ensembl
GRCm38683,671,207 - 83,677,857 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl683,671,215 - 83,677,857 (-)EnsemblGRCm38mm10GRCm38
MGSCv37683,621,201 - 83,627,851 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36683,636,873 - 83,643,515 (-)NCBIMGSCv36mm8
Celera685,653,930 - 85,660,605 (-)NCBICelera
Cytogenetic Map6C3NCBI
Cd207
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542414,355,739 - 14,361,318 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542414,355,739 - 14,361,326 (+)NCBIChiLan1.0ChiLan1.0
CD207
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.12A72,006,822 - 72,012,421 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A72,006,822 - 72,012,421 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v02A70,893,068 - 70,898,668 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
CD207
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11069,186,698 - 69,190,289 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1069,074,316 - 69,077,682 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01070,209,265 - 70,212,632 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.11069,927,765 - 69,931,117 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01070,189,158 - 70,192,510 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01070,488,678 - 70,492,044 (-)NCBIUU_Cfam_GSD_1.0
Cd207
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629213,537,234 - 13,542,765 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493649115,029,216 - 15,034,075 (-)EnsemblSpeTri2.0
SpeTri2.0NW_00493649115,029,086 - 15,079,067 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CD207
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl371,668,223 - 71,675,358 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1371,668,233 - 71,674,871 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
CD207
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11436,250,858 - 36,284,468 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1436,278,722 - 36,283,445 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604575,737,723 - 75,743,628 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cd207
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247622,558,222 - 2,561,845 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247622,528,394 - 2,561,720 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Cd207
31 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:40
Count of miRNA genes:36
Interacting mature miRNAs:39
Transcripts:ENSRNOT00000017691
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2303168Bp330Blood pressure QTL 3304.250.017arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)45214602146446691Rat
2316958Gluco58Glucose level QTL 5810blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)411320076180699135Rat
1358352Srcrt3Stress Responsive Cort QTL 32.29blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)438465774146803430Rat
1300139Hrtrt6Heart rate QTL 62.85heart pumping trait (VT:2000009)heart rate (CMO:0000002)439524264116179656Rat
1576305Emca6Estrogen-induced mammary cancer QTL 65.8mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)444463720155883716Rat
1354612Foco1Food consumption QTL 18.87eating behavior trait (VT:0001431)food intake rate (CMO:0000427)444463908148090542Rat
1354660Salc1Saline consumption QTL 111.26drinking behavior trait (VT:0001422)saline drink intake rate (CMO:0001627)444463908148090542Rat
2312567Glom19Glomerulus QTL 191.90.006kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)445456990146803430Rat
1298082Stresp4Stress response QTL 4blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)450119848146803430Rat
70200Alc18Alcohol consumption QTL 189.2drinking behavior trait (VT:0001422)ethanol intake volume to total fluid intake volume ratio (CMO:0001591)456647873149491524Rat
1641833Alc21Alcohol consumption QTL 218.60.0001drinking behavior trait (VT:0001422)ethanol drink intake rate (CMO:0001407)456698790126192555Rat
738009Sach4Saccharine consumption QTL 44.90.000016consumption behavior trait (VT:0002069)saccharin intake volume to total fluid intake volume ratio (CMO:0001601)459948935154902892Rat
738016Alc16Alcohol consumption QTL 163.60.00015consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)459948935154902892Rat
738031Alc14Alcohol consumption QTL 147.60.00003consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)459948935154902892Rat
61418Pia5Pristane induced arthritis QTL 54.5joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)462277855128289560Rat
631674Iddm14Insulin dependent diabetes mellitus QTL 14blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)464528739157573521Rat
61330Eau1Experimental allergic uveoretinitis QTL 10.0003uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)470362013132642728Rat
631646Stl4Serum triglyceride level QTL 46.50.0001blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)473169846132642728Rat
724522Bp146Blood pressure QTL 1462.20.0021arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)473630210118630210Rat
2302051Pia28Pristane induced arthritis QTL 285.30.001blood autoantibody amount (VT:0003725)serum immunoglobulin G-type rheumatoid factor level relative to an arbitrary reference serum (CMO:0002112)473630210118630210Rat
70167Bw22Body weight QTL 223.1body mass (VT:0001259)body weight (CMO:0000012)476647384117676292Rat
1357342Bw40Body weight QTL 400.001body mass (VT:0001259)body weight (CMO:0000012)476647384117676292Rat
631662Hcar2Hepatocarcinoma resistance QTL 23.10.0003liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)478878504123878504Rat
631556Bp135Blood pressure QTL 1350.017arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)478881294117676292Rat
738015Pia9Pristane induced arthritis QTL 94.50.048joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)480694870125694870Rat
2306899Bp338Blood pressure QTL 3380.071arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)481006124120102625Rat
1641919Alc22Alcohol consumption QTL 220.0005drinking behavior trait (VT:0001422)ethanol drink intake rate (CMO:0001407)481192555126192555Rat
70177Xhs1X-ray hypersensitivity QTL 125.1intestine integrity trait (VT:0010554)post-insult time to onset of moribundity (CMO:0001896)482798864152731274Rat
1576316Ept5Estrogen-induced pituitary tumorigenesis QTL 53.8pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)483428419177635233Rat
634334Xhs3X-ray hypersensitivity QTL 310intestine integrity trait (VT:0010554)post-insult time to onset of moribundity (CMO:0001896)484728680129854654Rat
1582232Gluco25Glucose level QTL 253.60.0023blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)485253748148090731Rat
12798523Anxrr56Anxiety related response QTL 562.830.05locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)485253748150276390Rat
1358202Gluco11Glucose level QTL 112.40.02adipocyte glucose uptake trait (VT:0004185)absolute change in adipocyte glucose uptake (CMO:0000873)485379421167139601Rat
61476Aia3Adjuvant induced arthritis QTL 33.9joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)486730991131730991Rat
1578662Bss15Bone structure and strength QTL 1519.6femur width (VT:1000666)femoral neck width (CMO:0001695)487327165132327165Rat
1578670Bss14Bone structure and strength QTL 1416.4femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)487327165132327165Rat
1578655Bmd11Bone mineral density QTL 1111femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)490850165135850165Rat
634335Anxrr16Anxiety related response QTL 167.22locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)493308457167139447Rat
631689Scl4Serum cholesterol level QTL 41.90.008blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)495174120140174120Rat
61434Cia3Collagen induced arthritis QTL 34.8joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4103194656148194656Rat
2302049Pia32Pristane induced arthritis QTL 325.10.001blood autoantibody amount (VT:0003725)serum immunoglobulin G-type rheumatoid factor level relative to an arbitrary reference serum (CMO:0002112)4105789505150789505Rat
731165Uae21Urinary albumin excretion QTL 212.40.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)4106649412151649412Rat
61406Scwia1Streptococcal cell wall induced arthritis QTL 12.3joint integrity trait (VT:0010548)experimental arthritis severity measurement (CMO:0001459)4106805662151805662Rat
7207480Bss105Bone structure and strength QTL 1058.1femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)4109827074154827074Rat
1549832Bss3Bone structure and strength QTL 311femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)4109827074154827074Rat
737821Hcar9Hepatocarcinoma resistance QTL 93.7liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)4109866907167139601Rat
1331759Hrtrt13Heart rate QTL 133.54628heart pumping trait (VT:2000009)heart rate (CMO:0000002)4110275411168266883Rat
6478760Anxrr45Anxiety related response QTL 450.06717locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4110870972155870972Rat
6478763Anxrr46Anxiety related response QTL 460.07428locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4110870972155870972Rat
12798519Anxrr54Anxiety related response QTL 542.540.05locomotor behavior trait (VT:0001392)distance moved per unit of time into, out of or within a discrete space in an experimental apparatus (CMO:0001493)4114627026159627026Rat


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system renal system reproductive system respiratory system appendage
High
Medium 6 6
Low 1 2 2 3
Below cutoff 2 7 14 12 2 12 4 5 2 10 7 4

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000017691   ⟹   ENSRNOP00000017691
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl4116,155,212 - 116,161,518 (-)Ensembl
Rnor_6.0 Ensembl4115,348,491 - 115,354,795 (-)Ensembl
RefSeq Acc Id: XM_578352   ⟹   XP_578352
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.24116,155,229 - 116,161,587 (-)NCBI
Rnor_6.04115,348,476 - 115,355,030 (-)NCBI
Rnor_5.04179,937,840 - 179,944,063 (-)NCBI
RGSC_v3.44117,866,542 - 117,872,334 (-)RGD
Sequence:
Protein Sequences
Protein RefSeqs XP_578352 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDL91156 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_578352   ⟸   XM_578352
- UniProtKB: D3ZBX0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000017691   ⟸   ENSRNOT00000017691
Protein Domains
C-type lectin

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZBX0-F1-model_v2 AlphaFold D3ZBX0 1-332 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13693186
Promoter ID:EPDNEW_R3708
Type:single initiation site
Name:Cd207_1
Description:CD207 molecule
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.04115,354,805 - 115,354,865EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1565913 AgrOrtholog
BioCyc Gene G2FUF-43998 BioCyc
Ensembl Genes ENSRNOG00000013222 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000017691 ENTREZGENE
  ENSRNOP00000017691.5 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000017691 ENTREZGENE
  ENSRNOT00000017691.7 UniProtKB/TrEMBL
Gene3D-CATH 3.10.100.10 UniProtKB/TrEMBL
InterPro C-type_lectin UniProtKB/TrEMBL
  C-type_lectin-like UniProtKB/TrEMBL
  C-type_lectin_CS UniProtKB/TrEMBL
  C-type_lectin_fold UniProtKB/TrEMBL
  CD209-like_CTLD UniProtKB/TrEMBL
KEGG Report rno:502852 UniProtKB/TrEMBL
NCBI Gene 502852 ENTREZGENE
Pfam Lectin_C UniProtKB/TrEMBL
PhenoGen Cd207 PhenoGen
PROSITE C_TYPE_LECTIN_1 UniProtKB/TrEMBL
  C_TYPE_LECTIN_2 UniProtKB/TrEMBL
SMART CLECT UniProtKB/TrEMBL
Superfamily-SCOP C-type_lectin_fold UniProtKB/TrEMBL
UniProt D3ZBX0 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-01-13 Cd207  CD207 molecule  Cd207  CD207 molecule, langerin  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-06-27 Cd207  CD207 molecule, langerin  Cd207  CD 207 antigen  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-03-07 Cd207  CD 207 antigen  RGD1565913_predicted  similar to C type lectin (predicted)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-01-09 RGD1565913_predicted  similar to C type lectin (predicted)  LOC686223  similar to CD207 antigen, langerin  Data Merged 1643240 APPROVED
2006-11-19 LOC686223  similar to CD207 antigen, langerin      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-03-07 RGD1565913_predicted  similar to C type lectin (predicted)  LOC502852  similar to C type lectin  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC502852  similar to C type lectin      Symbol and Name status set to provisional 70820 PROVISIONAL