Osbpl3 (oxysterol binding protein-like 3) - Rat Genome Database

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Gene: Osbpl3 (oxysterol binding protein-like 3) Rattus norvegicus
Analyze
Symbol: Osbpl3
Name: oxysterol binding protein-like 3
RGD ID: 1564287
Description: Predicted to enable cholesterol binding activity and sterol transporter activity. Predicted to be involved in sterol transport. Predicted to be located in nuclear membrane. Predicted to be active in cytosol; perinuclear endoplasmic reticulum; and plasma membrane. Orthologous to human OSBPL3 (oxysterol binding protein like 3); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; amphetamine; astemizole.
Type: protein-coding
RefSeq Status: MODEL
Previously known as: LOC362360; oxysterol-binding protein-related protein 3; RGD1564287; similar to mKIAA0704 protein
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2479,346,583 - 79,523,523 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl479,350,349 - 79,523,393 (-)Ensembl
Rnor_6.0480,025,453 - 80,202,532 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl480,025,440 - 80,107,884 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04144,696,471 - 144,871,563 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4478,521,743 - 78,600,559 (-)NCBIRGSC3.4rn4RGSC3.4
Celera474,255,304 - 74,429,859 (-)NCBICelera
Cytogenetic Map4q24NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-epigallocatechin 3-gallate  (ISO)
1,2-dichloroethane  (ISO)
1,2-dimethylhydrazine  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
3,4-methylenedioxymethamphetamine  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
acrolein  (ISO)
acrylamide  (ISO)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
alpha-pinene  (ISO)
amphetamine  (EXP)
aristolochic acid  (ISO)
astemizole  (EXP)
atrazine  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
benzo[b]fluoranthene  (ISO)
Benzo[k]fluoranthene  (ISO)
bisphenol A  (EXP,ISO)
calcium silicate  (ISO)
carbon nanotube  (ISO)
copper(II) sulfate  (ISO)
cyclosporin A  (ISO)
dexamethasone  (ISO)
dibenzo[a,l]pyrene  (ISO)
dicrotophos  (ISO)
Diisodecyl phthalate  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
ethanol  (ISO)
folic acid  (ISO)
formaldehyde  (ISO)
gentamycin  (EXP)
indometacin  (ISO)
ivermectin  (ISO)
lipopolysaccharide  (ISO)
mercury dibromide  (ISO)
methylmercury chloride  (ISO)
N-nitrosodiethylamine  (ISO)
nickel atom  (ISO)
ozone  (ISO)
paracetamol  (ISO)
phenformin  (EXP)
phenobarbital  (ISO)
phenylmercury acetate  (ISO)
pirinixic acid  (ISO)
potassium chromate  (ISO)
quercetin  (ISO)
raloxifene  (ISO)
resveratrol  (ISO)
rotenone  (EXP)
SB 431542  (ISO)
sunitinib  (ISO)
tamoxifen  (ISO)
Testosterone propionate  (ISO)
tetracycline  (ISO)
tetraphene  (ISO)
thioacetamide  (EXP)
titanium dioxide  (ISO)
tributylstannane  (EXP,ISO)
trichloroethene  (EXP,ISO)
triclosan  (ISO)
triphenyl phosphate  (EXP)
valproic acid  (ISO)
vorinostat  (ISO)
zinc atom  (ISO)
zinc(0)  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

Additional References at PubMed
PMID:14593528   PMID:17428193   PMID:19946888   PMID:31505169  


Genomics

Comparative Map Data
Osbpl3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2479,346,583 - 79,523,523 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl479,350,349 - 79,523,393 (-)Ensembl
Rnor_6.0480,025,453 - 80,202,532 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl480,025,440 - 80,107,884 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04144,696,471 - 144,871,563 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4478,521,743 - 78,600,559 (-)NCBIRGSC3.4rn4RGSC3.4
Celera474,255,304 - 74,429,859 (-)NCBICelera
Cytogenetic Map4q24NCBI
OSBPL3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38724,796,537 - 24,981,845 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl724,796,540 - 24,981,634 (-)EnsemblGRCh38hg38GRCh38
GRCh37724,836,156 - 25,019,797 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36724,802,684 - 24,986,285 (-)NCBINCBI36hg18NCBI36
Build 34724,609,400 - 24,793,000NCBI
Celera724,824,627 - 25,008,750 (-)NCBI
Cytogenetic Map7p15.3NCBI
HuRef724,720,703 - 24,906,416 (-)NCBIHuRef
CHM1_1724,837,721 - 25,021,266 (-)NCBICHM1_1
T2T-CHM13v2.0724,934,545 - 25,118,180 (-)NCBI
CRA_TCAGchr7v2724,887,733 - 25,071,319 (-)NCBI
Osbpl3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39650,270,307 - 50,433,334 (-)NCBIGRCm39mm39
GRCm39 Ensembl650,270,310 - 50,433,181 (-)Ensembl
GRCm38650,293,327 - 50,456,354 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl650,293,330 - 50,456,201 (-)EnsemblGRCm38mm10GRCm38
MGSCv37650,243,326 - 50,406,169 (-)NCBIGRCm37mm9NCBIm37
MGSCv36650,226,393 - 50,312,423 (-)NCBImm8
Celera650,810,067 - 50,973,049 (-)NCBICelera
Cytogenetic Map6B2.3NCBI
Osbpl3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541026,804,410 - 26,888,470 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541026,804,475 - 26,968,985 (-)NCBIChiLan1.0ChiLan1.0
OSBPL3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1725,077,818 - 25,260,792 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl725,077,818 - 25,173,534 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0725,471,477 - 25,654,883 (-)NCBIMhudiblu_PPA_v0panPan3
OSBPL3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11438,313,944 - 38,491,989 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1438,317,891 - 38,426,298 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1437,864,105 - 38,041,884 (-)NCBI
ROS_Cfam_1.01438,250,574 - 38,428,273 (-)NCBI
ROS_Cfam_1.0 Ensembl1438,250,598 - 38,346,739 (-)Ensembl
UMICH_Zoey_3.11438,363,372 - 38,541,472 (-)NCBI
UNSW_CanFamBas_1.01438,056,243 - 38,233,740 (-)NCBI
UU_Cfam_GSD_1.01438,398,860 - 38,576,400 (-)NCBI
Osbpl3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440511882,539,464 - 82,628,201 (-)NCBI
SpeTri2.0NW_0049364781,751,157 - 1,839,932 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
OSBPL3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1847,298,328 - 47,491,245 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11847,298,303 - 47,491,248 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21852,203,413 - 52,400,163 (+)NCBISscrofa10.2Sscrofa10.2susScr3
OSBPL3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12133,390,085 - 33,573,684 (+)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl2133,390,313 - 33,574,865 (+)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604271,077,973 - 71,263,014 (-)NCBIVero_WHO_p1.0
Osbpl3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247395,557,947 - 5,761,984 (+)EnsemblHetGla_female_1.0hetGla2
HetGla 1.0NW_0046247395,558,085 - 5,761,888 (+)NCBIHetGla_female_1.0hetGla2

Position Markers
RH137394  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2479,350,385 - 79,350,589 (+)MAPPERmRatBN7.2
Rnor_6.0480,029,254 - 80,029,457NCBIRnor6.0
Rnor_5.04144,700,272 - 144,700,475UniSTSRnor5.0
RGSC_v3.4478,521,791 - 78,521,994UniSTSRGSC3.4
Celera474,259,105 - 74,259,308UniSTS
RH 3.4 Map4500.0UniSTS
Cytogenetic Map4q24UniSTS
BI293443  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2479,382,338 - 79,382,507 (+)MAPPERmRatBN7.2
Rnor_6.0480,061,111 - 80,061,279NCBIRnor6.0
Rnor_5.04144,732,129 - 144,732,297UniSTSRnor5.0
RGSC_v3.4478,553,648 - 78,553,816UniSTSRGSC3.4
Celera474,290,914 - 74,291,082UniSTS
RH 3.4 Map4512.1UniSTS
Cytogenetic Map4q24UniSTS
BF397996  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2479,428,724 - 79,428,854 (+)MAPPERmRatBN7.2
Rnor_6.0480,107,713 - 80,107,842NCBIRnor6.0
Rnor_5.04144,778,575 - 144,778,704UniSTSRnor5.0
RGSC_v3.4478,600,528 - 78,600,657UniSTSRGSC3.4
Celera474,337,328 - 74,337,457UniSTS
RH 3.4 Map2395.8UniSTS
Cytogenetic Map4q24UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2303168Bp330Blood pressure QTL 3304.250.017arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)45214602146446691Rat
631261Tcas3Tongue tumor susceptibility QTL 36.88tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)41081417091360527Rat
2316958Gluco58Glucose level QTL 5810blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)411320076180699135Rat
8655906Rf60Renal function QTL 603.8blood creatinine amount (VT:0005328)creatinine clearance (CMO:0000765)42949419581006281Rat
12798520Anxrr55Anxiety related response QTL 554.450.01locomotor behavior trait (VT:0001392)number of rearing movements with lid-pushing in an experimental apparatus (CMO:0002715)432583980114627242Rat
8552782Vie1Viral induced encephalitis QTL 126.4brain integrity trait (VT:0010579)encephalitis incidence/prevalence measurement (CMO:0002361)43443048482490359Rat
8552801Bw143Body weight QTL 1437.3body mass (VT:0001259)change in body weight to body weight ratio (CMO:0002216)43443048482490359Rat
8552809Vie5Viral induced encephalitis QTL 525.3brain integrity trait (VT:0010579)encephalitis incidence/prevalence measurement (CMO:0002361)43443048482490359Rat
8655961Kidm43Kidney mass QTL 4318kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)436303261103194984Rat
1358352Srcrt3Stress Responsive Cort QTL 32.29blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)438465774146803430Rat
1300139Hrtrt6Heart rate QTL 62.85heart pumping trait (VT:2000009)heart rate (CMO:0000002)439524264116179656Rat
61445Strs3Sensitivity to stroke QTL 33cerebrum integrity trait (VT:0010549)post-insult time to onset of cerebrovascular lesion (CMO:0002343)44043338885433388Rat
8694439Bw168Body weight QTL 1689.570.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)44043341485433414Rat
6893678Bw108Body weight QTL 1082.60.006body mass (VT:0001259)body weight (CMO:0000012)44345797688457976Rat
1576305Emca6Estrogen-induced mammary cancer QTL 65.8mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)444463720155883716Rat
1354612Foco1Food consumption QTL 18.87eating behavior trait (VT:0001431)food intake rate (CMO:0000427)444463908148090542Rat
1354660Salc1Saline consumption QTL 111.26drinking behavior trait (VT:0001422)saline drink intake rate (CMO:0001627)444463908148090542Rat
2312567Glom19Glomerulus QTL 191.90.006kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)445456990146803430Rat
1298082Stresp4Stress response QTL 4blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)450119848146803430Rat
70200Alc18Alcohol consumption QTL 189.2drinking behavior trait (VT:0001422)ethanol intake volume to total fluid intake volume ratio (CMO:0001591)456647873149491524Rat
1641833Alc21Alcohol consumption QTL 218.60.0001drinking behavior trait (VT:0001422)ethanol drink intake rate (CMO:0001407)456698790126192555Rat
631546Bp86Blood pressure QTL 863.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)45711443291360801Rat
634311Sach7Saccharin preference QTL 7taste sensitivity trait (VT:0001986)saccharin intake volume to total fluid intake volume ratio (CMO:0001601)457114432102114432Rat
1358363Sradr3Stress Responsive Adrenal Weight QTL 36.19adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)457486946102486946Rat
1558651Swd3Spike wave discharge measurement QTL 34.620.000024brain electrophysiology trait (VT:0010557)brain spike-and-wave discharge frequency (CMO:0001742)45843213392991462Rat
738009Sach4Saccharine consumption QTL 44.90.000016consumption behavior trait (VT:0002069)saccharin intake volume to total fluid intake volume ratio (CMO:0001601)459948935154902892Rat
738016Alc16Alcohol consumption QTL 163.60.00015consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)459948935154902892Rat
738031Alc14Alcohol consumption QTL 147.60.00003consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)459948935154902892Rat
1578657Bss12Bone structure and strength QTL 128.9femur morphology trait (VT:0000559)femoral neck cross-sectional area (CMO:0001697)460220938105220938Rat
1578658Bss13Bone structure and strength QTL 138femur strength trait (VT:0010010)femoral neck polar moment of inertia (CMO:0001670)460220938105220938Rat
2300179Bmd50Bone mineral density QTL 505.90.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)460928534105928534Rat
1549843Bw53Body weight QTL 530.0001body mass (VT:0001259)body weight gain (CMO:0000420)461697658103194791Rat
1549839Bw52Body weight QTL 520.0001body mass (VT:0001259)body weight gain (CMO:0000420)461697658115089733Rat
61418Pia5Pristane induced arthritis QTL 54.5joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)462277855128289560Rat
6478743Anxrr40Anxiety related response QTL 400.83076defecation behavior trait (VT:0010462)defecation rate (CMO:0000998)462753847107753847Rat
6478772Anxrr49Anxiety related response QTL 490.15488defecation behavior trait (VT:0010462)defecation rate (CMO:0000998)462753847107753847Rat
6478684Anxrr30Anxiety related response QTL 300.00087defecation behavior trait (VT:0010462)defecation rate (CMO:0000998)462753847107753847Rat
631651Bp124Blood pressure QTL 1243arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)462879517107879517Rat
7394826Bw126Body weight QTL 1260.002body mass (VT:0001259)body weight gain (CMO:0000420)46293326987483707Rat
8552807Vie4Viral induced encephalitis QTL 47.3brain integrity trait (VT:0010579)encephalitis incidence/prevalence measurement (CMO:0002361)46293350882490359Rat
70192BpQTLcluster5Blood pressure QTL cluster 54.183arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)462933508114921294Rat
70192BpQTLcluster5Blood pressure QTL cluster 54.183arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)462933508114921294Rat
70192BpQTLcluster5Blood pressure QTL cluster 54.183arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)462933508114921294Rat
70192BpQTLcluster5Blood pressure QTL cluster 54.183arterial blood pressure trait (VT:2000000)percent change in mean arterial blood pressure (CMO:0002035)462933508114921294Rat
70192BpQTLcluster5Blood pressure QTL cluster 54.183arterial blood pressure trait (VT:2000000)percent change in systolic blood pressure (CMO:0000747)462933508114921294Rat
70192BpQTLcluster5Blood pressure QTL cluster 54.183arterial blood pressure trait (VT:2000000)absolute change in pulse pressure (CMO:0001882)462933508114921294Rat
70192BpQTLcluster5Blood pressure QTL cluster 54.183arterial blood pressure trait (VT:2000000)absolute change in mean arterial blood pressure (CMO:0000533)462933508114921294Rat
631674Iddm14Insulin dependent diabetes mellitus QTL 14blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)464528739157573521Rat
2312569Pur19Proteinuria QTL 193.40.001total urine protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)46588210796130297Rat
61330Eau1Experimental allergic uveoretinitis QTL 10.0003uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)470362013132642728Rat
634344Hcar7Hepatocarcinoma resistance QTL 77.8liver integrity trait (VT:0010547)liver tumorous lesion area to total liver area ratio (CMO:0001075)470808386115808386Rat
634344Hcar7Hepatocarcinoma resistance QTL 77.8liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)470808386115808386Rat
631646Stl4Serum triglyceride level QTL 46.50.0001blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)473169846132642728Rat
724522Bp146Blood pressure QTL 1462.20.0021arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)473630210118630210Rat
2302051Pia28Pristane induced arthritis QTL 285.30.001blood autoantibody amount (VT:0003725)serum immunoglobulin G-type rheumatoid factor level relative to an arbitrary reference serum (CMO:0002112)473630210118630210Rat
70167Bw22Body weight QTL 223.1body mass (VT:0001259)body weight (CMO:0000012)476647384117676292Rat
1357342Bw40Body weight QTL 400.001body mass (VT:0001259)body weight (CMO:0000012)476647384117676292Rat
631662Hcar2Hepatocarcinoma resistance QTL 23.10.0003liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)478878504123878504Rat
631556Bp135Blood pressure QTL 1350.017arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)478881294117676292Rat
2317586Eae25Experimental allergic encephalomyelitis QTL 259.300000190734863nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis severity score (CMO:0001419)47888281783007655Rat
2317586Eae25Experimental allergic encephalomyelitis QTL 259.300000190734863nervous system integrity trait (VT:0010566)percentage of study population developing experimental autoimmune encephalomyelitis during a period of time (CMO:0001047)47888281783007655Rat
2317586Eae25Experimental allergic encephalomyelitis QTL 259.300000190734863nervous system integrity trait (VT:0010566)post-insult time to onset of experimental autoimmune encephalomyelitis (CMO:0001422)47888281783007655Rat
2317586Eae25Experimental allergic encephalomyelitis QTL 259.300000190734863nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis duration (CMO:0001424)47888281783007655Rat
61364Iddm2Insulin dependent diabetes mellitus QTL 2blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)478885890102684881Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:96
Count of miRNA genes:59
Interacting mature miRNAs:62
Transcripts:ENSRNOT00000013828, ENSRNOT00000039655
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 1 12 6 6 9 35 7 5
Low 2 31 51 41 13 41 8 10 65 34 6 8
Below cutoff 1

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_001055606 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006224919 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006224920 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006224921 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006224922 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006224923 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006236515 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006236516 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006236517 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006236518 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006236519 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008762934 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008762935 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008775732 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008775733 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017592994 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017602795 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039108672 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039108674 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_342683 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide CH474011 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JACYVU010000142 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000013828   ⟹   ENSRNOP00000013828
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl479,350,349 - 79,523,393 (-)Ensembl
Rnor_6.0 Ensembl480,025,440 - 80,107,884 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000106709   ⟹   ENSRNOP00000091685
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl479,350,349 - 79,411,954 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000117089   ⟹   ENSRNOP00000080185
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl479,350,349 - 79,523,393 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000119357   ⟹   ENSRNOP00000097750
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl479,350,349 - 79,523,393 (-)Ensembl
RefSeq Acc Id: XM_006236515   ⟹   XP_006236577
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2479,346,583 - 79,523,522 (-)NCBI
Rnor_6.0480,025,453 - 80,202,531 (-)NCBI
Rnor_5.04144,696,471 - 144,871,563 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006236516   ⟹   XP_006236578
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2479,346,583 - 79,523,522 (-)NCBI
Rnor_6.0480,025,453 - 80,202,531 (-)NCBI
Rnor_5.04144,696,471 - 144,871,563 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006236518   ⟹   XP_006236580
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2479,346,583 - 79,446,484 (-)NCBI
Rnor_6.0480,025,453 - 80,123,912 (-)NCBI
Rnor_5.04144,696,471 - 144,871,563 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006236519   ⟹   XP_006236581
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2479,346,583 - 79,523,521 (-)NCBI
Rnor_6.0480,025,453 - 80,202,531 (-)NCBI
Rnor_5.04144,696,471 - 144,871,563 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008762934   ⟹   XP_008761156
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2479,346,583 - 79,523,523 (-)NCBI
Rnor_6.0480,025,453 - 80,202,532 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008762935   ⟹   XP_008761157
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2479,346,583 - 79,523,522 (-)NCBI
Rnor_6.0480,025,453 - 80,202,532 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017592994   ⟹   XP_017448483
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2479,346,583 - 79,523,523 (-)NCBI
Rnor_6.0480,025,453 - 80,202,531 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039108672   ⟹   XP_038964600
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2479,346,583 - 79,491,604 (-)NCBI
RefSeq Acc Id: XM_039108674   ⟹   XP_038964602
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2479,346,583 - 79,478,125 (-)NCBI
RefSeq Acc Id: XM_342683   ⟹   XP_342684
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2479,346,583 - 79,441,989 (-)NCBI
Rnor_6.0480,025,453 - 80,121,613 (-)NCBI
Rnor_5.04144,696,471 - 144,871,563 (-)NCBI
RGSC_v3.4478,521,743 - 78,600,559 (-)RGD
Sequence:
Reference Sequences
RefSeq Acc Id: XP_342684   ⟸   XM_342683
- Peptide Label: isoform X1
- UniProtKB: D3ZHZ3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006236581   ⟸   XM_006236519
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_006236577   ⟸   XM_006236515
- Peptide Label: isoform X1
- UniProtKB: D3ZHZ3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006236578   ⟸   XM_006236516
- Peptide Label: isoform X1
- UniProtKB: D3ZHZ3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006236580   ⟸   XM_006236518
- Peptide Label: isoform X1
- UniProtKB: D3ZHZ3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008761157   ⟸   XM_008762935
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_008761156   ⟸   XM_008762934
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_017448483   ⟸   XM_017592994
- Peptide Label: isoform X1
- UniProtKB: D3ZHZ3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000013828   ⟸   ENSRNOT00000013828
RefSeq Acc Id: XP_038964600   ⟸   XM_039108672
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038964602   ⟸   XM_039108674
- Peptide Label: isoform X1
RefSeq Acc Id: ENSRNOP00000091685   ⟸   ENSRNOT00000106709
RefSeq Acc Id: ENSRNOP00000080185   ⟸   ENSRNOT00000117089
RefSeq Acc Id: ENSRNOP00000097750   ⟸   ENSRNOT00000119357
Protein Domains
PH

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZHZ3-F1-model_v2 AlphaFold D3ZHZ3 1-886 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Strain Variation

Strain Sequence Variants (MRatBN7.2)
ACI/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN-Lx/CubMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BUF/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH2/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH3/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
DA/OlaHsd (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/DuCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE16/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE18/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GK/FarMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB10/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB2/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB20/IpcvMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB31/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB4/IpcvMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEW/Crl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF10A/StmMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF11/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1A/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1C/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF2B/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF3/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF4/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LH/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LL/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LN/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/NRrrcMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MR/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MWF/Hsd (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
PVG/Seac (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHR/OlalpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/A3NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SR/JrHsd (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SS/JrHsdMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WAG/RijCrl (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WN/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
Damaging Variants


Assembly: Rnor_6.0

Chromosome Start Pos End Pos Reference Nucleotide Variant Nucleotide Variant Type Strain
4 80081325 80081326 C T snv SBN/Ygl (MCW), MR/N (MCW), BBDP/Wor (RGD), LEW/Crl (RGD), LEW/NCrlBR (RGD), WAG/RijCrl (2020), SBN/Ygl (RGD), WAG/Rij (RGD), LEW/Crl (2019), MR/N (2020), MNS/Gib (RGD)


Assembly: Rnor_5.0

Chromosome Start Pos End Pos Reference Nucleotide Variant Nucleotide Variant Type Strain
4 144752343 144752344 C T snv SBN/Ygl (MCW), MR/N (KNAW), WAG/Rij (KNAW), SBN/Ygl (KNAW), LEW/Crl (KNAW), LEW/NCrl (KNAW), MNS/Gib (KNAW), BBDP/WorN (KNAW)


Assembly: mRatBN7.2

Chromosome Start Pos End Pos Reference Nucleotide Variant Nucleotide Variant Type Strain
4 79402556 79402557 C T snv LEW/Crl (2019), WAG/RijCrl (2020), MR/N (2020)


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1564287 AgrOrtholog
BioCyc Gene G2FUF-44897 BioCyc
Ensembl Genes ENSRNOG00000010011 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000013828 ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOP00000080185 ENTREZGENE
  ENSRNOP00000091685 ENTREZGENE
  ENSRNOP00000097750 ENTREZGENE
Ensembl Transcript ENSRNOT00000013828 ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOT00000106709 ENTREZGENE
  ENSRNOT00000117089 ENTREZGENE
  ENSRNOT00000119357 ENTREZGENE
Gene3D-CATH 2.30.29.30 UniProtKB/TrEMBL
InterPro OSBP_sf UniProtKB/TrEMBL
  Oxysterol-bd UniProtKB/TrEMBL
  Oxysterol-bd_CS UniProtKB/TrEMBL
  PH_8 UniProtKB/TrEMBL
  PH_type UniProtKB/TrEMBL
  Pleckstrin_homology UniProtKB/TrEMBL
KEGG Report rno:362360 UniProtKB/TrEMBL
NCBI Gene 362360 ENTREZGENE
PANTHER Oxysterol_bd UniProtKB/TrEMBL
Pfam Oxysterol_BP UniProtKB/TrEMBL
  PH_8 UniProtKB/TrEMBL
PhenoGen Osbpl3 PhenoGen
PROSITE OSBP UniProtKB/TrEMBL
  PH_DOMAIN UniProtKB/TrEMBL
SMART SM00233 UniProtKB/TrEMBL
Superfamily-SCOP SSF144000 UniProtKB/TrEMBL
UniProt D3ZHZ3 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-03-07 Osbpl3  oxysterol binding protein-like 3  RGD1564287_predicted  similar to mKIAA0704 protein (predicted)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-03-07 RGD1564287_predicted  similar to mKIAA0704 protein (predicted)  LOC362360  similar to mKIAA0704 protein  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC362360  similar to mKIAA0704 protein      Symbol and Name status set to provisional 70820 PROVISIONAL