LOC120102554 (U4 spliceosomal RNA) - Rat Genome Database

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Gene: LOC120102554 (U4 spliceosomal RNA) Rattus norvegicus
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Symbol: LOC120102554
Name: U4 spliceosomal RNA
RGD ID: 41389009
Description:
Type: pseudo (Ensembl: snRNA)
RefSeq Status: MODEL
Previously known as: U4
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84106,806,266 - 106,806,423 (-)NCBIGRCr8
mRatBN7.24105,248,170 - 105,248,327 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4105,248,170 - 105,248,327 (-)NCBImRatBN7.2 Ensembl
mRatBN7.2 Ensembl4105,248,170 - 105,248,327 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0 Ensembl4101,119,458 - 101,119,596 (-)NCBIRnor6.0rn6Rnor6.0
Cytogenetic Map4q32NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model




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1 to 10 of 51 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1582232Gluco25Glucose level QTL 253.60.0023blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)485253748148090731Rat
631689Scl4Serum cholesterol level QTL 41.90.008blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)495174120140174120Rat
1358352Srcrt3Stress Responsive Cort QTL 32.29blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)438465774146803430Rat
1578655Bmd11Bone mineral density QTL 1111femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)490850165135850165Rat
10755501Bp390Blood pressure QTL 3902.5arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)426775591168368347Rat
1357342Bw40Body weight QTL 400.001body mass (VT:0001259)body weight (CMO:0000012)476647384117676292Rat
631556Bp135Blood pressure QTL 1350.017arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)478881294117676292Rat
61330Eau1Experimental allergic uveoretinitis QTL 10.0003uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)470362013132642728Rat
70167Bw22Body weight QTL 223.1body mass (VT:0001259)body weight (CMO:0000012)476647384117676292Rat
1549839Bw52Body weight QTL 520.0001body mass (VT:0001259)body weight gain (CMO:0000420)461697658115089733Rat

1 to 10 of 51 rows





GenBank Nucleotide JAXUCZ010000004 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000084876
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl4105,248,170 - 105,248,327 (-)Ensembl

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen



Database
Acc Id
Source(s)
BioCyc Gene G2FUF-44123 BioCyc
Ensembl Genes ENSRNOG00000052655 Ensembl
NCBI Gene LOC120102554 ENTREZGENE
PhenoGen LOC120102554 PhenoGen
RatGTEx ENSRNOG00000052655 RatGTEx
RNAcentral URS00006E4A3D RNACentral


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-02 LOC120102554  U4 spliceosomal RNA  U4  U4 spliceosomal RNA  Data merged from RGD:15007313 737654 PROVISIONAL
2021-01-27 LOC120102554  U4 spliceosomal RNA      Symbol and Name status set to provisional 70820 PROVISIONAL
2019-11-08 U4  U4 spliceosomal RNA      Symbol and Name status set to provisional 45752 PROVISIONAL