St3gal5 (ST3 beta-galactoside alpha-2,3-sialyltransferase 5) - Rat Genome Database

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Gene: St3gal5 (ST3 beta-galactoside alpha-2,3-sialyltransferase 5) Rattus norvegicus
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Symbol: St3gal5
Name: ST3 beta-galactoside alpha-2,3-sialyltransferase 5
RGD ID: 620875
Description: Predicted to enable lactosylceramide alpha-2,3-sialyltransferase activity. Predicted to be involved in protein glycosylation. Predicted to be located in Golgi membrane. Predicted to be integral component of membrane. Human ortholog(s) of this gene implicated in salt and pepper syndrome. Orthologous to human ST3GAL5 (ST3 beta-galactoside alpha-2,3-sialyltransferase 5); PARTICIPATES IN ganglioside metabolic pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran; 2-acetamidofluorene.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: CMP-NeuAc:lactosylceramide alpha-2,3-sialyltransferase; ganglioside GM3 synthase; GM3 synthase; lactosylceramide alpha-2,3-sialyltransferase; sialyltransferase 9 (CMP-NeuAc:lactosylceramide alpha-2,3-sialyltransferase); sialyltransferase 9 (CMP-NeuAc:lactosylceramide alpha-2,3-sialyltransferase, GM3 synthase); Siat9; ST3Gal V; ST3GalV
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.24104,134,553 - 104,192,560 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl4104,134,613 - 104,192,558 (+)Ensembl
Rnor_6.0499,937,499 - 99,999,905 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl499,937,558 - 99,999,902 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04164,713,194 - 164,769,525 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44105,373,385 - 105,432,192 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.14105,618,018 - 105,676,673 (+)NCBI
Celera493,289,811 - 93,346,557 (+)NCBICelera
Cytogenetic Map4q31NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,1-dichloroethene  (ISO)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3,7,8-Tetrachlorodibenzofuran  (EXP)
2-acetamidofluorene  (EXP)
3,3',4,4'-tetrachlorobiphenyl  (ISO)
3,4-methylenedioxymethamphetamine  (ISO)
3-chloropropane-1,2-diol  (EXP)
3H-1,2-dithiole-3-thione  (ISO)
4,4'-diaminodiphenylmethane  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxyphenyl retinamide  (ISO)
acrolein  (ISO)
aflatoxin B1  (ISO)
aldrin  (ISO)
all-trans-retinoic acid  (ISO)
alpha-pinene  (ISO)
ammonium chloride  (EXP)
aristolochic acid  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (ISO)
benzene  (ISO)
benzo[a]pyrene  (ISO)
bisphenol A  (EXP,ISO)
bleomycin A2  (ISO)
calcitriol  (ISO)
carbon nanotube  (ISO)
chloroethene  (ISO)
ciguatoxin CTX1B  (ISO)
clofibrate  (ISO)
cobalt dichloride  (ISO)
copper(II) sulfate  (ISO)
cyclosporin A  (ISO)
cytarabine  (ISO)
dibenz[a,h]anthracene  (ISO)
doxorubicin  (ISO)
endosulfan  (EXP)
etoposide  (ISO)
gentamycin  (EXP)
GW 4064  (ISO)
lead(0)  (ISO)
lead(2+)  (ISO)
leflunomide  (EXP)
methotrexate  (ISO)
ochratoxin A  (ISO)
ozone  (ISO)
panobinostat  (ISO)
paracetamol  (ISO)
pentachlorophenol  (ISO)
perfluorohexanesulfonic acid  (ISO)
perfluorononanoic acid  (ISO)
perfluorooctanoic acid  (ISO)
phenobarbital  (ISO)
pirinixic acid  (ISO)
pregnenolone 16alpha-carbonitrile  (ISO)
progesterone  (ISO)
propanal  (ISO)
propiconazole  (ISO)
S-(1,2-dichlorovinyl)-L-cysteine  (ISO)
serpentine asbestos  (ISO)
sodium arsenite  (ISO)
Soman  (EXP)
streptozocin  (EXP)
sunitinib  (ISO)
tamoxifen  (ISO)
Tesaglitazar  (EXP)
tetrachloromethane  (ISO)
thapsigargin  (ISO)
thioacetamide  (EXP)
trichloroethene  (EXP)
trichostatin A  (ISO)
triptonide  (ISO)
troglitazone  (EXP)
tungsten  (ISO)
tunicamycin  (ISO)
valproic acid  (ISO)
vanadyl sulfate  (EXP)
vinclozolin  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

Additional References at PubMed
PMID:9822625  


Genomics

Comparative Map Data
St3gal5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.24104,134,553 - 104,192,560 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl4104,134,613 - 104,192,558 (+)Ensembl
Rnor_6.0499,937,499 - 99,999,905 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl499,937,558 - 99,999,902 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04164,713,194 - 164,769,525 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44105,373,385 - 105,432,192 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.14105,618,018 - 105,676,673 (+)NCBI
Celera493,289,811 - 93,346,557 (+)NCBICelera
Cytogenetic Map4q31NCBI
ST3GAL5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38285,837,120 - 85,889,034 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl285,837,120 - 85,905,199 (-)EnsemblGRCh38hg38GRCh38
GRCh37286,064,243 - 86,116,157 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36285,919,782 - 85,969,668 (-)NCBINCBI36hg18NCBI36
Build 34285,977,928 - 86,027,795NCBI
Celera285,894,364 - 85,944,312 (-)NCBI
Cytogenetic Map2p11.2NCBI
HuRef285,963,652 - 86,013,554 (-)NCBIHuRef
CHM1_1285,995,811 - 86,045,674 (-)NCBICHM1_1
St3gal5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39672,074,502 - 72,131,555 (+)NCBIGRCm39mm39
GRCm39 Ensembl672,074,576 - 72,131,555 (+)Ensembl
GRCm38672,097,552 - 72,154,571 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl672,097,592 - 72,154,571 (+)EnsemblGRCm38mm10GRCm38
MGSCv37672,047,607 - 72,104,564 (+)NCBIGRCm37mm9NCBIm37
MGSCv36672,027,122 - 72,084,079 (+)NCBImm8
Celera674,186,058 - 74,242,678 (+)NCBICelera
Cytogenetic Map6C1NCBI
St3gal5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554241,692,182 - 1,732,595 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554241,692,182 - 1,729,206 (+)NCBIChiLan1.0ChiLan1.0
ST3GAL5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.12A87,437,873 - 87,485,660 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A87,437,874 - 87,503,625 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v02A85,888,895 - 85,938,944 (-)NCBIMhudiblu_PPA_v0panPan3
ST3GAL5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11739,154,408 - 39,205,661 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1739,153,469 - 39,204,873 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1738,839,485 - 38,890,646 (+)NCBI
ROS_Cfam_1.01739,888,484 - 39,939,963 (+)NCBI
ROS_Cfam_1.0 Ensembl1739,888,415 - 39,939,989 (+)Ensembl
UMICH_Zoey_3.11739,055,842 - 39,107,115 (+)NCBI
UNSW_CanFamBas_1.01739,091,990 - 39,143,194 (+)NCBI
UU_Cfam_GSD_1.01739,478,527 - 39,530,011 (+)NCBI
St3gal5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629279,362,332 - 79,399,787 (-)NCBI
SpeTri2.0NW_0049367121,458,637 - 1,496,118 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ST3GAL5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl358,862,992 - 58,919,960 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1358,862,984 - 58,919,554 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2361,761,954 - 61,767,961 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ST3GAL5
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11421,235,682 - 21,314,541 (+)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl1421,287,241 - 21,313,558 (+)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604591,166,353 - 91,219,731 (-)NCBIVero_WHO_p1.0
St3gal5
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462474917,312,144 - 17,354,906 (+)NCBIHetGla_female_1.0hetGla2

Position Markers
RH131370  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.24104,192,190 - 104,192,412 (+)MAPPERmRatBN7.2
Rnor_6.0499,999,536 - 99,999,757NCBIRnor6.0
Rnor_5.04164,769,156 - 164,769,377UniSTSRnor5.0
RGSC_v3.44105,431,826 - 105,432,047UniSTSRGSC3.4
Celera493,346,191 - 93,346,412UniSTS
RH 3.4 Map4629.66UniSTS
Cytogenetic Map4q33UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2303168Bp330Blood pressure QTL 3304.250.017arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)45214602146446691Rat
2316958Gluco58Glucose level QTL 5810blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)411320076180699135Rat
12798520Anxrr55Anxiety related response QTL 554.450.01locomotor behavior trait (VT:0001392)number of rearing movements with lid-pushing in an experimental apparatus (CMO:0002715)432583980114627242Rat
1358352Srcrt3Stress Responsive Cort QTL 32.29blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)438465774146803430Rat
1300139Hrtrt6Heart rate QTL 62.85heart pumping trait (VT:2000009)heart rate (CMO:0000002)439524264116179656Rat
1576305Emca6Estrogen-induced mammary cancer QTL 65.8mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)444463720155883716Rat
1354612Foco1Food consumption QTL 18.87eating behavior trait (VT:0001431)food intake rate (CMO:0000427)444463908148090542Rat
1354660Salc1Saline consumption QTL 111.26drinking behavior trait (VT:0001422)saline drink intake rate (CMO:0001627)444463908148090542Rat
2312567Glom19Glomerulus QTL 191.90.006kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)445456990146803430Rat
1298082Stresp4Stress response QTL 4blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)450119848146803430Rat
70200Alc18Alcohol consumption QTL 189.2drinking behavior trait (VT:0001422)ethanol intake volume to total fluid intake volume ratio (CMO:0001591)456647873149491524Rat
1641833Alc21Alcohol consumption QTL 218.60.0001drinking behavior trait (VT:0001422)ethanol drink intake rate (CMO:0001407)456698790126192555Rat
738009Sach4Saccharine consumption QTL 44.90.000016consumption behavior trait (VT:0002069)saccharin intake volume to total fluid intake volume ratio (CMO:0001601)459948935154902892Rat
738016Alc16Alcohol consumption QTL 163.60.00015consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)459948935154902892Rat
738031Alc14Alcohol consumption QTL 147.60.00003consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)459948935154902892Rat
1578657Bss12Bone structure and strength QTL 128.9femur morphology trait (VT:0000559)femoral neck cross-sectional area (CMO:0001697)460220938105220938Rat
1578658Bss13Bone structure and strength QTL 138femur strength trait (VT:0010010)femoral neck polar moment of inertia (CMO:0001670)460220938105220938Rat
2300179Bmd50Bone mineral density QTL 505.90.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)460928534105928534Rat
1549839Bw52Body weight QTL 520.0001body mass (VT:0001259)body weight gain (CMO:0000420)461697658115089733Rat
61418Pia5Pristane induced arthritis QTL 54.5joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)462277855128289560Rat
6478743Anxrr40Anxiety related response QTL 400.83076defecation behavior trait (VT:0010462)defecation rate (CMO:0000998)462753847107753847Rat
6478772Anxrr49Anxiety related response QTL 490.15488defecation behavior trait (VT:0010462)defecation rate (CMO:0000998)462753847107753847Rat
6478684Anxrr30Anxiety related response QTL 300.00087defecation behavior trait (VT:0010462)defecation rate (CMO:0000998)462753847107753847Rat
631651Bp124Blood pressure QTL 1243arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)462879517107879517Rat
70192BpQTLcluster5Blood pressure QTL cluster 54.183arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)462933508114921294Rat
70192BpQTLcluster5Blood pressure QTL cluster 54.183arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)462933508114921294Rat
70192BpQTLcluster5Blood pressure QTL cluster 54.183arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)462933508114921294Rat
70192BpQTLcluster5Blood pressure QTL cluster 54.183arterial blood pressure trait (VT:2000000)percent change in mean arterial blood pressure (CMO:0002035)462933508114921294Rat
70192BpQTLcluster5Blood pressure QTL cluster 54.183arterial blood pressure trait (VT:2000000)percent change in systolic blood pressure (CMO:0000747)462933508114921294Rat
70192BpQTLcluster5Blood pressure QTL cluster 54.183arterial blood pressure trait (VT:2000000)absolute change in pulse pressure (CMO:0001882)462933508114921294Rat
70192BpQTLcluster5Blood pressure QTL cluster 54.183arterial blood pressure trait (VT:2000000)absolute change in mean arterial blood pressure (CMO:0000533)462933508114921294Rat
631674Iddm14Insulin dependent diabetes mellitus QTL 14blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)464528739157573521Rat
61330Eau1Experimental allergic uveoretinitis QTL 10.0003uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)470362013132642728Rat
634344Hcar7Hepatocarcinoma resistance QTL 77.8liver integrity trait (VT:0010547)liver tumorous lesion area to total liver area ratio (CMO:0001075)470808386115808386Rat
634344Hcar7Hepatocarcinoma resistance QTL 77.8liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)470808386115808386Rat
631646Stl4Serum triglyceride level QTL 46.50.0001blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)473169846132642728Rat
724522Bp146Blood pressure QTL 1462.20.0021arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)473630210118630210Rat
2302051Pia28Pristane induced arthritis QTL 285.30.001blood autoantibody amount (VT:0003725)serum immunoglobulin G-type rheumatoid factor level relative to an arbitrary reference serum (CMO:0002112)473630210118630210Rat
70167Bw22Body weight QTL 223.1body mass (VT:0001259)body weight (CMO:0000012)476647384117676292Rat
1357342Bw40Body weight QTL 400.001body mass (VT:0001259)body weight (CMO:0000012)476647384117676292Rat
631662Hcar2Hepatocarcinoma resistance QTL 23.10.0003liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)478878504123878504Rat
631556Bp135Blood pressure QTL 1350.017arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)478881294117676292Rat
738015Pia9Pristane induced arthritis QTL 94.50.048joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)480694870125694870Rat
2306899Bp338Blood pressure QTL 3380.071arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)481006124120102625Rat
1641919Alc22Alcohol consumption QTL 220.0005drinking behavior trait (VT:0001422)ethanol drink intake rate (CMO:0001407)481192555126192555Rat
70177Xhs1X-ray hypersensitivity QTL 125.1intestine integrity trait (VT:0010554)post-insult time to onset of moribundity (CMO:0001896)482798864152731274Rat
1576316Ept5Estrogen-induced pituitary tumorigenesis QTL 53.8pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)483428419177635233Rat
634334Xhs3X-ray hypersensitivity QTL 310intestine integrity trait (VT:0010554)post-insult time to onset of moribundity (CMO:0001896)484728680129854654Rat
1582232Gluco25Glucose level QTL 253.60.0023blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)485253748148090731Rat
12798523Anxrr56Anxiety related response QTL 562.830.05locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)485253748150276390Rat
1358202Gluco11Glucose level QTL 112.40.02adipocyte glucose uptake trait (VT:0004185)absolute change in adipocyte glucose uptake (CMO:0000873)485379421167139601Rat
61476Aia3Adjuvant induced arthritis QTL 33.9joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)486730991131730991Rat
1578662Bss15Bone structure and strength QTL 1519.6femur width (VT:1000666)femoral neck width (CMO:0001695)487327165132327165Rat
1578670Bss14Bone structure and strength QTL 1416.4femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)487327165132327165Rat
1578655Bmd11Bone mineral density QTL 1111femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)490850165135850165Rat
634335Anxrr16Anxiety related response QTL 167.22locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)493308457167139447Rat
631689Scl4Serum cholesterol level QTL 41.90.008blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)495174120140174120Rat
61434Cia3Collagen induced arthritis QTL 34.8joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4103194656148194656Rat
2317588Eae27Experimental allergic encephalomyelitis QTL 27nervous system integrity trait (VT:0010566)percentage of study population developing experimental autoimmune encephalomyelitis during a period of time (CMO:0001047)4103194805112478794Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:531
Count of miRNA genes:252
Interacting mature miRNAs:311
Transcripts:ENSRNOT00000050249
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 2 43 36 26 13 26 2 74 35 39 11
Low 1 21 15 6 15 8 9 2 8
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001398712 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001398713 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001398714 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_031337 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_174121 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006236676 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006236677 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006236679 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006236680 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006236682 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006236684 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008762996 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017592913 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039108436 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039108437 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039108438 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039108439 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039108441 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039108442 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB018049 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC133017 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC078798 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473957 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JACYVU010000148 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000050249   ⟹   ENSRNOP00000042426
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl4104,134,613 - 104,192,557 (+)Ensembl
Rnor_6.0 Ensembl499,937,558 - 99,999,902 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000078793   ⟹   ENSRNOP00000072818
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl4104,134,658 - 104,192,558 (+)Ensembl
Rnor_6.0 Ensembl499,937,711 - 99,999,902 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000115948   ⟹   ENSRNOP00000082302
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl4104,172,045 - 104,192,558 (+)Ensembl
RefSeq Acc Id: NM_031337   ⟹   NP_112627
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.24104,134,613 - 104,192,557 (+)NCBI
Rnor_6.0499,937,558 - 99,999,902 (+)NCBI
Rnor_5.04164,713,194 - 164,769,525 (+)NCBI
RGSC_v3.44105,373,385 - 105,432,192 (+)RGD
Celera493,289,811 - 93,346,557 (+)RGD
Sequence:
RefSeq Acc Id: XM_006236676   ⟹   XP_006236738
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.24104,134,553 - 104,192,560 (+)NCBI
Rnor_6.0499,937,499 - 99,999,905 (+)NCBI
Rnor_5.04164,713,194 - 164,769,525 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006236677   ⟹   XP_006236739
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.24104,134,593 - 104,192,545 (+)NCBI
Rnor_6.0499,937,538 - 99,999,905 (+)NCBI
Rnor_5.04164,713,194 - 164,769,525 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006236679   ⟹   XP_006236741
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.24104,134,769 - 104,192,551 (+)NCBI
Rnor_6.0499,937,714 - 99,999,905 (+)NCBI
Rnor_5.04164,713,194 - 164,769,525 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006236680   ⟹   XP_006236742
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.24104,134,553 - 104,192,560 (+)NCBI
Rnor_6.0499,937,499 - 99,999,905 (+)NCBI
Rnor_5.04164,713,194 - 164,769,525 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006236682   ⟹   XP_006236744
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.24104,134,605 - 104,192,545 (+)NCBI
Rnor_6.0499,937,560 - 99,999,905 (+)NCBI
Rnor_5.04164,713,194 - 164,769,525 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006236684   ⟹   XP_006236746
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.24104,134,755 - 104,192,545 (+)NCBI
Rnor_6.0499,937,700 - 99,999,905 (+)NCBI
Rnor_5.04164,713,194 - 164,769,525 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017592913   ⟹   XP_017448402
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.24104,134,593 - 104,192,545 (+)NCBI
Rnor_6.0499,937,538 - 99,999,905 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039108436   ⟹   XP_038964364
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.24104,134,791 - 104,192,545 (+)NCBI
RefSeq Acc Id: XM_039108437   ⟹   XP_038964365
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.24104,147,582 - 104,192,545 (+)NCBI
RefSeq Acc Id: XM_039108438   ⟹   XP_038964366
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.24104,134,593 - 104,192,545 (+)NCBI
RefSeq Acc Id: XM_039108439   ⟹   XP_038964367
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.24104,147,690 - 104,192,545 (+)NCBI
RefSeq Acc Id: XM_039108441   ⟹   XP_038964369
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.24104,134,593 - 104,192,545 (+)NCBI
RefSeq Acc Id: XM_039108442   ⟹   XP_038964370
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.24104,134,762 - 104,192,560 (+)NCBI
Reference Sequences
RefSeq Acc Id: NP_112627   ⟸   NM_031337
- UniProtKB: Q68G12 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006236742   ⟸   XM_006236680
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_006236738   ⟸   XM_006236676
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006236739   ⟸   XM_006236677
- Peptide Label: isoform X3
- UniProtKB: Q68G12 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006236744   ⟸   XM_006236682
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_006236746   ⟸   XM_006236684
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_006236741   ⟸   XM_006236679
- Peptide Label: isoform X3
- UniProtKB: Q68G12 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_017448402   ⟸   XM_017592913
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: ENSRNOP00000042426   ⟸   ENSRNOT00000050249
RefSeq Acc Id: ENSRNOP00000072818   ⟸   ENSRNOT00000078793
RefSeq Acc Id: XP_038964366   ⟸   XM_039108438
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038964369   ⟸   XM_039108441
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038964370   ⟸   XM_039108442
- Peptide Label: isoform X6
RefSeq Acc Id: XP_038964364   ⟸   XM_039108436
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038964365   ⟸   XM_039108437
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038964367   ⟸   XM_039108439
- Peptide Label: isoform X3
RefSeq Acc Id: ENSRNOP00000082302   ⟸   ENSRNOT00000115948

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q68G12-F1-model_v2 AlphaFold Q68G12 1-387 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13693121
Promoter ID:EPDNEW_R3646
Type:initiation region
Name:St3gal5_1
Description:ST3 beta-galactoside alpha-2,3-sialyltransferase 5
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0499,937,527 - 99,937,587EPDNEW

Strain Variation

Strain Sequence Variants (MRatBN7.2)
ACI/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN-Lx/CubMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BUF/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH2/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH3/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
DA/OlaHsd (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/DuCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE16/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE18/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GK/FarMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB10/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB2/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB20/IpcvMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB31/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB4/IpcvMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEW/Crl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF10A/StmMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF11/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1A/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1C/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF2B/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF3/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF4/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LH/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LL/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LN/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/NRrrcMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MR/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MWF/Hsd (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
PVG/Seac (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHR/OlalpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/A3NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SR/JrHsd (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SS/JrHsdMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WAG/RijCrl (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WN/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:620875 AgrOrtholog
BioCyc Gene G2FUF-44166 BioCyc
BioCyc Pathway PWY-7836 [ganglio-series glycosphingolipids biosynthesis] BioCyc
  PWY-7839 [lacto-series glycosphingolipids biosynthesis] BioCyc
  PWY-7840 [gala-series glycosphingolipids biosynthesis] BioCyc
Ensembl Genes ENSRNOG00000010284 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000042426 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSRNOP00000072818 ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOP00000082302 ENTREZGENE
Ensembl Transcript ENSRNOT00000050249 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSRNOT00000078793 ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOT00000115948 ENTREZGENE
Gene3D-CATH 3.90.1480.20 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7106217 IMAGE-MGC_LOAD
InterPro Glyco_trans_29 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GT29-like_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Sialyl_trans UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:83505 UniProtKB/Swiss-Prot
MGC_CLONE MGC:93367 IMAGE-MGC_LOAD
NCBI Gene 83505 ENTREZGENE
Pfam Glyco_transf_29 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen St3gal5 PhenoGen
PIRSF Sialyl_trans UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0G2K3X7_RAT UniProtKB/TrEMBL
  Q68G12 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary O88830 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2006-03-30 St3gal5  ST3 beta-galactoside alpha-2,3-sialyltransferase 5  Siat9  sialyltransferase 9 (CMP-NeuAc:lactosylceramide alpha-2,3-sialyltransferase)  Symbol and Name updated 1299863 APPROVED
2005-01-20 Siat9  sialyltransferase 9 (CMP-NeuAc:lactosylceramide alpha-2,3-sialyltransferase)    sialyltransferase 9 (CMP-NeuAc:lactosylceramide alpha-2,3-sialyltransferase; GM3 synthase)  Name updated 1299863 APPROVED
2002-08-07 Siat9  sialyltransferase 9 (CMP-NeuAc:lactosylceramide alpha-2,3-sialyltransferase; GM3 synthase)      Symbol and Name status set to provisional 70820 PROVISIONAL