C4h2orf81 (similar to human chromosome 2 open reading frame 81) - Rat Genome Database

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Gene: C4h2orf81 (similar to human chromosome 2 open reading frame 81) Rattus norvegicus
Analyze
Symbol: C4h2orf81
Name: similar to human chromosome 2 open reading frame 81
RGD ID: 1566019
Description: Predicted to be located in cytoplasm and microtubule. Predicted to be part of dynein complex. Orthologous to human C2orf81 (chromosome 2 open reading frame 81); INTERACTS WITH bisphenol A; benzo[a]pyrene (ortholog); iron dichloride (ortholog).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: hypothetical gene supported by BC079424; hypothetical protein LOC500227; LOC500227; uncharacterized protein C2orf81 homolog
RGD Orthologs
Human
Mouse
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84117,219,357 - 117,225,633 (+)NCBIGRCr8
mRatBN7.24115,661,617 - 115,667,929 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4115,661,638 - 115,703,815 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx4121,138,401 - 121,144,660 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04116,913,584 - 116,919,841 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04115,527,857 - 115,534,088 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.04114,854,449 - 114,860,678 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4114,854,458 - 114,860,677 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04179,443,519 - 179,449,748 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44117,367,724 - 117,373,944 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera4104,655,846 - 104,662,066 (+)NCBICelera
Cytogenetic Map4q34NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.

Genomics

Comparative Map Data
C4h2orf81
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84117,219,357 - 117,225,633 (+)NCBIGRCr8
mRatBN7.24115,661,617 - 115,667,929 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4115,661,638 - 115,703,815 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx4121,138,401 - 121,144,660 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04116,913,584 - 116,919,841 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04115,527,857 - 115,534,088 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.04114,854,449 - 114,860,678 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4114,854,458 - 114,860,677 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04179,443,519 - 179,449,748 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44117,367,724 - 117,373,944 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera4104,655,846 - 104,662,066 (+)NCBICelera
Cytogenetic Map4q34NCBI
C2orf81
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38274,414,177 - 74,421,619 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl274,414,176 - 74,421,619 (-)EnsemblGRCh38hg38GRCh38
GRCh37274,641,304 - 74,648,746 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36274,488,432 - 74,498,442 (-)NCBINCBI36Build 36hg18NCBI36
Celera274,472,492 - 74,476,033 (-)NCBICelera
Cytogenetic Map2p13.1NCBI
HuRef274,377,616 - 74,381,157 (-)NCBIHuRef
CHM1_1274,570,728 - 74,574,269 (-)NCBICHM1_1
T2T-CHM13v2.0274,422,733 - 74,430,176 (-)NCBIT2T-CHM13v2.0
1700003E16Rik
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39683,133,386 - 83,139,957 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl683,133,386 - 83,139,927 (+)EnsemblGRCm39 Ensembl
GRCm38683,156,404 - 83,162,975 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl683,156,404 - 83,162,945 (+)EnsemblGRCm38mm10GRCm38
MGSCv37683,106,398 - 83,112,969 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36683,122,062 - 83,128,624 (+)NCBIMGSCv36mm8
Celera685,139,312 - 85,145,879 (+)NCBICelera
Cytogenetic Map6C3NCBI
cM Map635.94NCBI
C12H2orf81
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21251,967,531 - 51,975,074 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A51,970,282 - 51,977,826 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A74,480,820 - 74,488,353 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A75,986,826 - 75,994,278 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A75,985,181 - 75,990,074 (-)Ensemblpanpan1.1panPan2
C17H2orf81
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11748,704,515 - 48,717,648 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1748,346,155 - 48,359,287 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01749,563,883 - 49,577,012 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1749,568,478 - 49,575,973 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11748,580,923 - 48,594,051 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01748,647,365 - 48,660,521 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01749,205,460 - 49,218,589 (+)NCBIUU_Cfam_GSD_1.0
CUNH2orf81
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629210,091,638 - 10,096,810 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936556640,884 - 647,053 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936556641,090 - 646,268 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
C3H2orf81
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl368,618,504 - 68,623,410 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1368,618,472 - 68,623,425 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2371,799,668 - 71,804,620 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CUNH2orf81
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11432,856,065 - 32,870,044 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604579,303,969 - 79,314,420 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
CUNH2orf81
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462474929,079,003 - 29,086,003 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in C4h2orf81
29 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:57
Count of miRNA genes:52
Interacting mature miRNAs:54
Transcripts:ENSRNOT00000013312
Prediction methods:Microtar, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
631689Scl4Serum cholesterol level QTL 41.90.008blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)495174120140174120Rat
1582232Gluco25Glucose level QTL 253.60.0023blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)485253748148090731Rat
1358352Srcrt3Stress Responsive Cort QTL 32.29blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)438465774146803430Rat
1578655Bmd11Bone mineral density QTL 1111femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)490850165135850165Rat
1357342Bw40Body weight QTL 400.001body mass (VT:0001259)body weight (CMO:0000012)476647384117676292Rat
631556Bp135Blood pressure QTL 1350.017arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)478881294117676292Rat
61330Eau1Experimental allergic uveoretinitis QTL 10.0003uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)470362013132642728Rat
70167Bw22Body weight QTL 223.1body mass (VT:0001259)body weight (CMO:0000012)476647384117676292Rat
731165Uae21Urinary albumin excretion QTL 212.40.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)4106649412151649412Rat
737821Hcar9Hepatocarcinoma resistance QTL 93.7liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)4109866907167139601Rat
1549832Bss3Bone structure and strength QTL 311femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)4109827074154827074Rat
70177Xhs1X-ray hypersensitivity QTL 125.1intestine integrity trait (VT:0010554)post-insult time to onset of moribundity (CMO:0001896)482798864152731274Rat
724522Bp146Blood pressure QTL 1462.20.0021arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)473630210118630210Rat
61476Aia3Adjuvant induced arthritis QTL 33.9joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)486730991131730991Rat
1641919Alc22Alcohol consumption QTL 220.0005drinking behavior trait (VT:0001422)ethanol drink intake rate (CMO:0001407)481192555126192555Rat
1354660Salc1Saline consumption QTL 111.26drinking behavior trait (VT:0001422)saline drink intake rate (CMO:0001627)444463908148090542Rat
1298082Stresp4Stress response QTL 4blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)450119848146803430Rat
1578670Bss14Bone structure and strength QTL 1416.4femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)487327165132327165Rat
1300139Hrtrt6Heart rate QTL 62.85heart pumping trait (VT:2000009)heart rate (CMO:0000002)439524264116179656Rat
70200Alc18Alcohol consumption QTL 189.2drinking behavior trait (VT:0001422)ethanol intake volume to total fluid intake volume ratio (CMO:0001591)456647873149491524Rat
1331759Hrtrt13Heart rate QTL 133.54628heart pumping trait (VT:2000009)heart rate (CMO:0000002)4110275411168266883Rat
2316958Gluco58Glucose level QTL 5810blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)411320076180699135Rat
1578662Bss15Bone structure and strength QTL 1519.6femur width (VT:1000666)femoral neck width (CMO:0001695)487327165132327165Rat
2302051Pia28Pristane induced arthritis QTL 285.30.001blood autoantibody amount (VT:0003725)serum immunoglobulin G-type rheumatoid factor level relative to an arbitrary reference serum (CMO:0002112)473630210118630210Rat
2302049Pia32Pristane induced arthritis QTL 325.10.001blood autoantibody amount (VT:0003725)serum immunoglobulin G-type rheumatoid factor level relative to an arbitrary reference serum (CMO:0002112)4105789505150789505Rat
6478763Anxrr46Anxiety related response QTL 460.07428locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4110870972155870972Rat
6478760Anxrr45Anxiety related response QTL 450.06717locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4110870972155870972Rat
738009Sach4Saccharine consumption QTL 44.90.000016consumption behavior trait (VT:0002069)saccharin intake volume to total fluid intake volume ratio (CMO:0001601)459948935154902892Rat
738015Pia9Pristane induced arthritis QTL 94.50.048joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)480694870125694870Rat
2312567Glom19Glomerulus QTL 191.90.006kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)445456990146803430Rat
7207480Bss105Bone structure and strength QTL 1058.1femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)4109827074154827074Rat
634335Anxrr16Anxiety related response QTL 167.22locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)493308457167139447Rat
631646Stl4Serum triglyceride level QTL 46.50.0001blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)473169846132642728Rat
634334Xhs3X-ray hypersensitivity QTL 310intestine integrity trait (VT:0010554)post-insult time to onset of moribundity (CMO:0001896)484728680129854654Rat
61406Scwia1Streptococcal cell wall induced arthritis QTL 12.3joint integrity trait (VT:0010548)experimental arthritis severity measurement (CMO:0001459)4106805662151805662Rat
1354612Foco1Food consumption QTL 18.87eating behavior trait (VT:0001431)food intake rate (CMO:0000427)444463908148090542Rat
634344Hcar7Hepatocarcinoma resistance QTL 77.8liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)470808386115808386Rat
2303168Bp330Blood pressure QTL 3304.250.017arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)45214602146446691Rat
738031Alc14Alcohol consumption QTL 147.60.00003consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)459948935154902892Rat
1576316Ept5Estrogen-induced pituitary tumorigenesis QTL 53.8pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)483428419177635233Rat
631662Hcar2Hepatocarcinoma resistance QTL 23.10.0003liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)478878504123878504Rat
1576305Emca6Estrogen-induced mammary cancer QTL 65.8mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)444463720155883716Rat
61418Pia5Pristane induced arthritis QTL 54.5joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)462277855128289560Rat
738016Alc16Alcohol consumption QTL 163.60.00015consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)459948935154902892Rat
1358202Gluco11Glucose level QTL 112.40.02adipocyte glucose uptake trait (VT:0004185)absolute change in adipocyte glucose uptake (CMO:0000873)485379421167139601Rat
1641833Alc21Alcohol consumption QTL 218.60.0001drinking behavior trait (VT:0001422)ethanol drink intake rate (CMO:0001407)456698790126192555Rat
2306899Bp338Blood pressure QTL 3380.071arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)481006124120102625Rat
631674Iddm14Insulin dependent diabetes mellitus QTL 14blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)464528739157573521Rat
12798519Anxrr54Anxiety related response QTL 542.540.05locomotor behavior trait (VT:0001392)distance moved per unit of time into, out of or within a discrete space in an experimental apparatus (CMO:0001493)4114627026159627026Rat
12798523Anxrr56Anxiety related response QTL 562.830.05locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)485253748150276390Rat
61434Cia3Collagen induced arthritis QTL 34.8joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4103194656148194656Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 34 113 64 63 33 21 33 6 173 78 93 45 60 30

Sequence


Ensembl Acc Id: ENSRNOT00000013312   ⟹   ENSRNOP00000013311
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl4115,661,705 - 115,667,928 (+)Ensembl
Rnor_6.0 Ensembl4114,854,458 - 114,860,677 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000068102   ⟹   ENSRNOP00000059076
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl4115,684,021 - 115,703,815 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000078175   ⟹   ENSRNOP00000072880
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl4115,684,021 - 115,703,815 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000099116   ⟹   ENSRNOP00000080290
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl4115,671,043 - 115,703,813 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000099394   ⟹   ENSRNOP00000085656
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl4115,672,998 - 115,703,813 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000100284   ⟹   ENSRNOP00000095934
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl4115,686,230 - 115,703,815 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000107740   ⟹   ENSRNOP00000082429
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl4115,661,638 - 115,703,813 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000110975   ⟹   ENSRNOP00000080377
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl4115,689,749 - 115,703,815 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000119334   ⟹   ENSRNOP00000094269
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl4115,665,569 - 115,667,928 (+)Ensembl
RefSeq Acc Id: NM_001024330   ⟹   NP_001019501
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84117,219,413 - 117,225,633 (+)NCBI
mRatBN7.24115,661,705 - 115,667,929 (+)NCBI
Rnor_6.04114,854,458 - 114,860,678 (+)NCBI
Rnor_5.04179,443,519 - 179,449,748 (+)NCBI
RGSC_v3.44117,367,724 - 117,373,944 (+)RGD
Celera4104,655,846 - 104,662,066 (+)RGD
Sequence:
RefSeq Acc Id: XM_006236784   ⟹   XP_006236846
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84117,219,357 - 117,225,629 (+)NCBI
mRatBN7.24115,661,617 - 115,667,929 (+)NCBI
Rnor_6.04114,854,449 - 114,860,675 (+)NCBI
Rnor_5.04179,443,519 - 179,449,748 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039108155   ⟹   XP_038964083
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84117,219,491 - 117,225,629 (+)NCBI
mRatBN7.24115,661,946 - 115,667,929 (+)NCBI
RefSeq Acc Id: XM_039108156   ⟹   XP_038964084
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84117,219,653 - 117,225,629 (+)NCBI
mRatBN7.24115,661,944 - 115,667,929 (+)NCBI
RefSeq Acc Id: NP_001019501   ⟸   NM_001024330
- UniProtKB: Q6AXP4 (UniProtKB/Swiss-Prot),   A0A8I6AQ46 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006236846   ⟸   XM_006236784
- Peptide Label: isoform X3
- UniProtKB: A0A8I6AQ46 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000013311   ⟸   ENSRNOT00000013312
RefSeq Acc Id: XP_038964084   ⟸   XM_039108156
- Peptide Label: isoform X2
- UniProtKB: A0A8I6AQ46 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038964083   ⟸   XM_039108155
- Peptide Label: isoform X1
- UniProtKB: A0A8I6AQ46 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000080377   ⟸   ENSRNOT00000110975
Ensembl Acc Id: ENSRNOP00000085656   ⟸   ENSRNOT00000099394
Ensembl Acc Id: ENSRNOP00000072880   ⟸   ENSRNOT00000078175
Ensembl Acc Id: ENSRNOP00000082429   ⟸   ENSRNOT00000107740
Ensembl Acc Id: ENSRNOP00000059076   ⟸   ENSRNOT00000068102
Ensembl Acc Id: ENSRNOP00000095934   ⟸   ENSRNOT00000100284
Ensembl Acc Id: ENSRNOP00000080290   ⟸   ENSRNOT00000099116
Ensembl Acc Id: ENSRNOP00000094269   ⟸   ENSRNOT00000119334
Protein Domains
CAP-Gly   Dynein associated protein

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q6AXP4-F1-model_v2 AlphaFold Q6AXP4 1-597 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13693173
Promoter ID:EPDNEW_R3698
Type:initiation region
Name:LOC500227_1
Description:hypothetical gene supported by BC079424
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.04114,854,438 - 114,854,498EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1566019 AgrOrtholog
BioCyc Gene G2FUF-44017 BioCyc
Ensembl Genes ENSRNOG00000009917 Ensembl
  ENSRNOG00000010048 Ensembl, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSRNOG00055012274 UniProtKB/Swiss-Prot
  ENSRNOG00060002369 UniProtKB/Swiss-Prot
  ENSRNOG00065015826 UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000013312.5 UniProtKB/Swiss-Prot
  ENSRNOT00000107740.1 UniProtKB/TrEMBL
  ENSRNOT00000110975.1 UniProtKB/TrEMBL
  ENSRNOT00000119334.1 UniProtKB/TrEMBL
  ENSRNOT00055020885 UniProtKB/Swiss-Prot
  ENSRNOT00060003747 UniProtKB/Swiss-Prot
  ENSRNOT00065026303 UniProtKB/Swiss-Prot
Gene3D-CATH 2.30.30.190 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7114113 IMAGE-MGC_LOAD
InterPro CAP-Gly_dom_sf UniProtKB/TrEMBL
  CAP-Gly_domain UniProtKB/TrEMBL
  DUF4639 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Dynactin UniProtKB/TrEMBL
KEGG Report rno:500227 UniProtKB/Swiss-Prot
MGC_CLONE MGC:94965 IMAGE-MGC_LOAD
NCBI Gene 500227 ENTREZGENE
PANTHER CHROMOSOME A3 C2ORF81 HOMOLOG UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  DYNACTIN 1-RELATED MICROTUBULE-BINDING UniProtKB/TrEMBL
  DYNACTIN SUBUNIT 1 UniProtKB/TrEMBL
  PTHR34438 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam CAP_GLY UniProtKB/TrEMBL
  DUF4639 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Dynactin UniProtKB/TrEMBL
PhenoGen C4h2orf81 PhenoGen
PROSITE CAP_GLY_1 UniProtKB/TrEMBL
  CAP_GLY_2 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000009917 RatGTEx
  ENSRNOG00000010048 RatGTEx
  ENSRNOG00055012274 RatGTEx
  ENSRNOG00060002369 RatGTEx
  ENSRNOG00065015826 RatGTEx
SMART CAP_GLY UniProtKB/TrEMBL
Superfamily-SCOP SSF74924 UniProtKB/TrEMBL
UniProt A0A8I5ZQJ2_RAT UniProtKB/TrEMBL
  A0A8I5ZUH0_RAT UniProtKB/TrEMBL
  A0A8I6AQ46 ENTREZGENE, UniProtKB/TrEMBL
  CB081_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-23 C4h2orf81  similar to human chromosome 2 open reading frame 81  LOC500227  hypothetical gene supported by BC079424  Name and Symbol changed 629549 APPROVED
2006-02-09 LOC500227  hypothetical gene supported by BC079424      Symbol and Name status set to provisional 70820 PROVISIONAL