Eae25 QTL Report (Rattus norvegicus) - Rat Genome Database
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QTL: Eae25 (Experimental allergic encephalomyelitis QTL 25) Rattus norvegicus

Symbol: Eae25
Name: Experimental allergic encephalomyelitis QTL 25
RGD ID: 2317586
Trait: nervous system integrity trait   (VT:0010566)    
Measurement Type: experimental autoimmune encephalomyelitis severity score   (CMO:0001419)    
LOD Score: 9.300000190734863
P Value: Not Available
Variance: Not Available
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.0479,559,380 - 84,053,053RGD_MAPPER_PIPELINERnor6.0
Rnor_5.04144,235,277 - 148,715,224RGDRnor5.0
RGSC_v3.4478,039,509 - 82,266,081RGDRGSC3.4
Cross Type: Not Available
Strains Crossed: DA/ZtmKini PVG.1AV1/Kini 
JBrowse: View Region in Genome Browser (JBrowse)
Model



Disease Annotations     Click to see Annotation Detail View

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype

References


Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
2814Hoxa4homeo box A448215823482160317Rat
3197Npyneuropeptide Y47955785679565059Rat
2451Cycscytochrome c, somatic48033122680333326Rat
620159Skap2src kinase associated phosphoprotein 248181677881968832Rat
708579Tax1bp1Tax1 binding protein 148277672082832586Rat
708399Hibadh3-hydroxyisobutyrate dehydrogenase48260436982702429Rat
61815Npvfneuropeptide VF precursor48039178580395476Rat
1307730Nfe2l3nuclear factor, erythroid 2-like 348120521481233068Rat
727871Gsdmegasdermin E47993407579999678Rat
1310403Hnrnpa2b1heterogeneous nuclear ribonucleoprotein A2/B148123749681241281Rat
1310827TrilTLR4 interactor with leucine-rich repeats48396769583972540Rat
1305782Snx10sorting nexin 1048131149081375248Rat
1563788LOC500124similar to RIKEN cDNA 4921507P0748034270580367606Rat
1564605Hoxa11homeobox A1148229688882301419Rat
1566107Creb5cAMP responsive element binding protein 548339078283840356Rat
1549705Cbx3chromobox 348124380981257898Rat
1311833Mpp6membrane palmitoylated protein 647984650679928977Rat
1587253Hoxa7homeobox A748218429982187890Rat
1563609Cpvlcarboxypeptidase, vitellogenic-like48402685184137172Rat
1561431Hoxa3homeobox A348213780282181836Rat
1565415RGD1565415similar to ribosomal protein L27a48031292980313426Rat
1561341RGD1561341similar to Translocase of outer mitochondrial membrane 20 homolog48130193881302447Rat
1564287Osbpl3oxysterol binding protein-like 348002545380202532Rat
1593850LOC685406LRRGT0006248263741182643922Rat
1589007Jazf1JAZF zinc finger 148283418183141430Rat
1590236Hoxa6homeobox A648217347882183597Rat
1592878LOC681658similar to CCAAT displacement protein isoform b48095168480953341Rat
1593814LOC685443similar to Serine/threonine-protein kinase 6 (Aurora-A) (ratAurA)48049110880492552Rat
1595057LOC685391LRRGT0006348264810382654785Rat
2314882Mir196bmicroRNA 196b48219905682199140Rat
2319193LOC100365386hypothetical LOC10036538648053953380558800Rat
2319409LOC100365265hypothetical LOC10036526548025699180257310Rat
6487865LOC100912228pro-neuropeptide Y-like47957399979581212Rat
6485971LOC100912608homeobox protein Hox-A10-like48220014582210368Rat
6502601LOC100909604homeobox protein Hox-A6-like48225927382270004Rat
6503227LOC100909487uncharacterized LOC10090948748221596382218363Rat
7508808LOC102546824uncharacterized LOC10254682448067375780702315Rat
7539472LOC102546951uncharacterized LOC10254695148075441980763344Rat
7652095LOC102546741uncharacterized LOC10254674148058626480587320Rat
7624339LOC102546410uncharacterized LOC10254641048033345080354224Rat
7657543LOC102549423uncharacterized LOC10254942348111011081118349Rat
7570592LOC102550087uncharacterized LOC10255008748196893282012227Rat
7571074LOC102555694uncharacterized LOC10255569447971229079716393Rat
7582303LOC102547399uncharacterized LOC10254739948216044682162059Rat
7551122LOC102548643serine/arginine-rich splicing factor 7-like48309399883096997Rat
7725703LOC102554823uncharacterized LOC10255482348214467482147154Rat
7716070Hotairm1Hoxa transcript antisense RNA, myeloid-specific 148212735582130853Rat
9092358LOC103692128homeobox protein Hox-A948227759982284820Rat
9112350LOC103689925homeobox protein Hox-A948219180482199025Rat
9082325LOC103692132uncharacterized LOC10369213248307341583084904Rat
9281529LOC103692122uncharacterized LOC10369212248079091880850050Rat
9360896LOC103692142homeobox protein Hox-A1348231338382315550Rat
9335367LOC103692124uncharacterized LOC10369212448174588781763259Rat
9260675LOC103689922homeobox protein Hox-A548217038382174788Rat
9372179LOC103692123uncharacterized LOC10369212348171417781726445Rat
9471641NEWGENE_1587253homeobox A748227010482273685Rat
9394491LOC103692125uncharacterized LOC10369212548191240081913700Rat
9437646LOC103692130uncharacterized LOC10369213048230139982303887Rat
9410935Hoxa10homeobox A1048228594082295892Rat
9419544LOC103692127homeobox protein Hox-A548225617782260583Rat
9685082Mir148amicroRNA 148a48101326981013365Rat
10398773Hoxaas3Hoxa cluster antisense RNA 348216981382182528Rat
11434685Evx1even-skipped homeobox 148237082982374313Rat
11468112Hoxa2homeobox A248213044182134846Rat
11438202LOC108350712uncharacterized LOC10835071248289410782898497Rat
11428746LOC108350859uncharacterized LOC10835085948029902480300018Rat
11414885Hoxa1homeobox A148212435882127182Rat
11420575LOC10835086060S ribosomal protein L31 pseudogene48206044982060836Rat
11401676LOC108350707uncharacterized LOC10835070748047416980475203Rat
11520376LOC10835070860S ribosomal protein L31 pseudogene48223965082240037Rat
11478125LOC108350706uncharacterized LOC10835070648036698380368659Rat
11505394LOC108350710uncharacterized LOC10835071048252831582542934Rat
11489265LOC108350709uncharacterized LOC10835070948248164182486600Rat
11492396LOC108350711uncharacterized LOC10835071148310778683122845Rat

Markers in Region
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolExpected SizeChrStartStopSpeciesMatch
11009D4Wox2113847957553479575667Ratregion
11009D4Wox2113847955938079559514Ratregion
11010D4Hri147957553479575658Ratregion
11010D4Hri147955938079559505Ratregion
11011D4Mgh420747957097179571177Ratregion
11012D4Wox2216247957870379578854Ratregion
11012D4Wox2216247956255079562701Ratregion
11013D4Arb726447957858179578874Ratregion
11013D4Arb726447956242879562721Ratregion
11014D4Mit710347956245179562753Ratregion
11015D4Mit2412847957553279575658Ratregion
11015D4Mit2412847955937879559505Ratregion
35190D4Rat22714348041424480414389Ratregion
36870D4Rat3316048187407381874227Ratregion
37646D4Rat10812248388940283889539Ratregion
37906D4Rat12720148001907680019278Ratregion
38656D4Rat12812248066635380666496Ratregion
39180D4Rat13820048344161383441806Ratregion
39530D4Rat21523048361664083616871Ratregion
42172D4Arb3513047957553279575677Ratregion
42172D4Arb3513047955937879559524Ratregion
42705D4Rat26524248405283284053053Ratregion
42706D4Rat28923148405285884053056Ratregion
40932D4Rat16623648027471380274914Ratregion
43816D4Got6420648261080882611010Ratregion
43818D4Got6214448048147680481619Ratregion
43819D4Got6617748384904183849216Ratregion
60431D4Got15829648302117483021469Ratregion
60447D4Got6114748201025382010399Ratregion
66669D4Mco221848046798780468211Ratregion
1631514D4Got21118848113669681136881Ratregion
1626708D4Kini115648353102183531176Ratregion
1626710D4Kini217748283993482840110Ratregion
1628038D4Cebr511048139908281399191Ratregion
1641131D4Got21219448245850482458699Ratregion
7193115Hoxa1320148222903682229236Ratregion
7193118Hoxa13118348222820482229386Ratregion
7192163Hoxa518248225627982256460Ratregion
7192163Hoxa518248217048582170666Ratregion
7192164Hoxa729948227153282271830Ratregion
7192164Hoxa729948218573782186035Ratregion
7192162Hoxa514848225627482256421Ratregion
7192162Hoxa514848217048082170627Ratregion
7206304Hoxa18148212693082127010Ratregion
7206308Hoxa117448230035382300426Ratregion
7206308Hoxa117448221482982214902Ratregion
7206310Hoxa27548213332282133396Ratregion
7206312Hoxa1381948231372282314540Ratregion
7206312Hoxa1381948222819882229016Ratregion
7206314Hoxa38948214123582141323Ratregion
7206316Hoxa47248215898982159060Ratregion
7206318Hoxa58548225860182258685Ratregion
7206318Hoxa58548217280682172890Ratregion
7206320Hoxa66848226304382263110Ratregion
7206320Hoxa66848217724882177315Ratregion
7206322Hoxa77748227179582271871Ratregion
7206322Hoxa77748218600082186076Ratregion
7206338Hoxa96748228052082280586Ratregion
7206338Hoxa96748219472582194791Ratregion
5035807PMC195978P134348033343880333780Ratregion
7206658Hoxa1384048231371982314558Ratregion
7206658Hoxa1384048222819582229034Ratregion
5036344Hoxa1320348231364982313851Ratregion
5036344Hoxa1320348222812582228327Ratregion
5036346Hoxa722348227017782270399Ratregion
5036346Hoxa722348218438282184604Ratregion
5036947AU04971417948247797882478156Ratregion
5028697D7S277434148228684282287182Ratregion
5028697D7S277434148220104782201387Ratregion
5031458AU04825624047958736179587600Ratregion
5030187BF38954620148380061883800818Ratregion
5027693RH6563113948279393082794068Ratregion
5033047RH13739420448002925480029457Ratregion
5025338RH12793419748214689982147095Ratregion
5028067U2037119348229787982298071Ratregion
5028067U2037119348221235582212547Ratregion
5028171D14Mit29047957860479578906Ratregion
5028171D14Mit29047956245179562753Ratregion
5033553RH13924512248124349881243619Ratregion
5028273D6Mit240.111348082296880823080Ratregion
5028312RH12216129848387423583874532Ratregion
5028338SGC3178910048283209882832197Ratregion
5030899BE10800719848281981882820015Ratregion
5030921BE10814414048037510080375239Ratregion
5052037RH9480425547957888479579138Ratregion
5052037RH9480425547956273179562985Ratregion
5055027RH14356314648396828583968430Ratregion
5051200RH13449718548283216382832347Ratregion
5051759RH946429948212541882125516Ratregion
5059448AW53087516048070213680702295Ratregion
5057614BI2832829948099547480995572Ratregion
5058746BF38701915348298755182987703Ratregion
5056607RH14447617348036845280368624Ratregion
5057003Hoxa515148225701782257167Ratregion
5057003Hoxa515148217122382171373Ratregion
5055437RH14380015548383576583835919Ratregion
5059726BF39426522448382218683822409Ratregion
5059768BI29194115248231100882311159Ratregion
5059768BI29194115248222548482225635Ratregion
5055651RH14392426448346695083467213Ratregion
5055651RH14392426448339173883392001Ratregion
5052385D14Mit29.111047957854779578656Ratregion
5052385D14Mit29.111047956239479562503Ratregion
5050378RH13402218248396774983967930Ratregion
5051234RH13451619848181871981818916Ratregion
5041798RH12906518048283424282834421Ratregion
5045022RH13093820048346722383467422Ratregion
5045022RH13093820048339201183392210Ratregion
5048944RH13319618548383893883839122Ratregion
5047868RH13257520248213152182131722Ratregion
5049254RH13337420248215841582158616Ratregion
5049632RH13359221547984762179847835Ratregion
5039374RH12766921947992984179930059Ratregion
7192215Hoxa9140048227879482280193Ratregion
7192215Hoxa9140048219299982194398Ratregion
5042960RH12974721148181691081817119Ratregion
5074010RH13776713948384005483840192Ratregion
5075144RH13842413747992601779926153Ratregion
5071112RH13489319948396886483969062Ratregion
5073324RH13737015148254278182542931Ratregion
5071690RH13522818648227017782270362Ratregion
5071690RH13522818648218438282184567Ratregion
5071708RH13523820748229447682294682Ratregion
5071708RH13523820748220895282209158Ratregion
5066678AU04821517348334167483341846Ratregion
5070277RH9457410047958107979581177Ratregion
5070277RH9457410047956492679565024Ratregion
5069150AU04669128148187404281874322Ratregion
5069240AU04662813848283996282840100Ratregion
5065340AA96372018748123527781235463Ratregion
5062496BF39799613048010771380107842Ratregion
5063798AW53521017548226505682265230Ratregion
5063798AW53521017548217926182179435Ratregion
5062822AW52837318448124506981245253Ratregion
5061218BI29344316948006111180061279Ratregion
5064638BF39949016748035828180358447Ratregion
5064662BF39953525047993138979931638Ratregion
5087769D11Bir939648083160080831995Ratregion
5087930Hoxa215148213193182132081Ratregion
5087932UniSTS:14336617048213055782130726Ratregion
5087928UniSTS:14336021648212673082126945Ratregion
5084688AI17063010548216126382161367Ratregion
5082101BF40953915848384224183842398Ratregion
5084596AI17043313948181432581814463Ratregion
5082921BF39041715048281248282812635Ratregion
5086311BM38703420348267727982677481Ratregion
5083885AA89314120748228705482287260Ratregion
5083885AA89314120748220125982201465Ratregion
5507489ECD0549673748230007282300808Ratregion
5507489ECD0549673748221454882215284Ratregion
5507674Hoxa10153748228735782288893Ratregion
5507674Hoxa10153748220156282203098Ratregion
5503746Hoxa956548227822882278792Ratregion
5503746Hoxa956548219243382192997Ratregion
5506113UniSTS:4983868548229784982297933Ratregion
5506113UniSTS:4983868548221232582212409Ratregion
5506322UniSTS:47475131148229722682297536Ratregion
5506322UniSTS:47475131148221170282212012Ratregion
5506642ECD0064489648213218882133083Ratregion
5506632ECD0030890848228637982287286Ratregion
5506632ECD0030890848220058482201491Ratregion
5507377REN10070423148229981482300044Ratregion
5507377REN10070423148221429082214520Ratregion
5499519stSG609304109348212305982124151Ratregion
5499521stSG609316103248213460882135639Ratregion
5499567AI3247018448213219782132280Ratregion
5499601MARC_1211-1212:991931105:121648123716181237536Ratregion
5499523stSG60934921948225636982256587Ratregion
5499523stSG60934921948217057582170793Ratregion
5499525stSG609369125648227876282280017Ratregion
5499525stSG609369125648219296782194222Ratregion
5499639MARC_6217-6218:992007117:123548225640382256637Ratregion
5499639MARC_6217-6218:992007117:123548217060982170843Ratregion
5500747UniSTS:5764934548225654982256893Ratregion
5500747UniSTS:5764934548217075582171099Ratregion
5503704UniSTS:46753645948214086682141324Ratregion
5503708UniSTS:46753733548226277282263106Ratregion
5503708UniSTS:46753733548217697782177311Ratregion
5501307ECD1314550748237070882371214Ratregion
5501311ECD1433250348214591882146420Ratregion
5501323ECD1607740348215935882159760Ratregion
5501796MARC_12745-12746:1030738152:139848213197982132376Ratregion
5506638ECD0041690248228734782288248Ratregion
5506638ECD0041690248220155282202453Ratregion
5507333REN9980723248223036382230594Ratregion
5507333REN9980723248205125982051490Ratregion
5507335REN10030227248212556682125837Ratregion
5507337REN10033825548213314082133394Ratregion
5507339REN10033924048213337382133612Ratregion
5507341REN10036325148213870582138955Ratregion
5507343REN10037526748214135782141623Ratregion
5507345REN10043624948215404582154293Ratregion
5507347REN10044427748215605282156328Ratregion
5507349REN10046423448216019682160429Ratregion
5507351REN10050725248225544882255699Ratregion
5507351REN10050725248216965482169905Ratregion
5507353REN10051127548225629182256565Ratregion
5507353REN10051127548217049782170771Ratregion
5507355REN10051225848225655182256808Ratregion
5507355REN10051225848217075782171014Ratregion
5507357REN10052224748225867382258919Ratregion
5507357REN10052224748217287882173124Ratregion
5507359REN10056323548226777182268005Ratregion
5507359REN10056323548218197682182210Ratregion
5507361REN10058022548227179182272015Ratregion
5507361REN10058022548218599682186220Ratregion
5507363REN10053326148226102682261286Ratregion
5507363REN10053326148217523182175491Ratregion
5507365REN10061924748228031882280564Ratregion
5507365REN10061924748219452382194769Ratregion
5507367REN10062025648228054582280800Ratregion
5507367REN10062025648219475082195005Ratregion
5507369REN10065822748228955682289782Ratregion
5507369REN10065822748220403282204258Ratregion
5507371REN10064223348228570182285933Ratregion
5507371REN10064223348219990682200138Ratregion
5507373REN10065925448228976482290017Ratregion
5507373REN10065925448220424082204493Ratregion
5507375REN10070322648229961182299836Ratregion
5507375REN10070322648221408782214312Ratregion
5507379REN10077122748222917382229399Ratregion
5507381REN10070626048230025082300509Ratregion
5507381REN10070626048221472682214985Ratregion
5507383REN10098922548237886682379090Ratregion
5507385REN10142623548249059082490824Ratregion
Position Markers

Flank 1: (D4Wox21)
Rat AssemblyChrPosition (strand)Source
Rnor_6.0479,559,380 - 79,559,514NCBI
Rnor_6.0479,575,534 - 79,575,667NCBI
Rnor_5.04144,235,277 - 144,235,411UniSTS
Rnor_5.04144,249,326 - 144,249,459UniSTS
RGSC_v3.4478,039,509 - 78,039,646RGD
RGSC_v3.4478,039,510 - 78,039,646UniSTS
RGSC_v3.1478,315,639 - 78,315,776RGD
Celera473,796,672 - 73,796,816UniSTS
Cytogenetic Map4q24UniSTS
RH 3.4 Map4504.2RGD
RH 3.4 Map4504.2UniSTS
RH 2.0 Map4547.5RGD
Peak: (D4Got64)
Rat AssemblyChrPosition (strand)Source
Rnor_6.0482,610,808 - 82,611,010NCBI
Rnor_5.04147,277,172 - 147,277,374UniSTS
RGSC_v3.4480,856,738 - 80,856,941RGD
RGSC_v3.4480,856,739 - 80,856,941UniSTS
RGSC_v3.1481,141,361 - 81,141,563RGD
Celera476,538,213 - 76,538,415UniSTS
Cytogenetic Map4q24UniSTS
RH 3.4 Map4516.1RGD
RH 3.4 Map4516.1UniSTS
RH 2.0 Map4555.7RGD
Flank 2: (D4Rat265)
Rat AssemblyChrPosition (strand)Source
Rnor_6.0484,052,832 - 84,053,053NCBI
Rnor_5.04148,715,003 - 148,715,224UniSTS
RGSC_v3.4482,265,859 - 82,266,081RGD
RGSC_v3.4482,265,860 - 82,266,081UniSTS
RGSC_v3.1482,550,481 - 82,550,703RGD
Celera477,885,488 - 77,885,709UniSTS
Cytogenetic Map4q24UniSTS
SHRSP x BN Map441.93UniSTS
SHRSP x BN Map441.93RGD


QTLs in Region (Rnor_6.0)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
619616Bp79Blood pressure QTL 790.0292arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)4304323179575658Rat
2303168Bp330Blood pressure QTL 3304.250.017arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)43043231145254791Rat
631261Tcas3Tongue tumor susceptibility QTL 36.88tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)4734240492484039Rat
2316958Gluco58Glucose level QTL 5810blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)47850904182171018Rat
10755501Bp390Blood pressure QTL 3902.5arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)423850384169318094Rat
8655906Rf60Renal function QTL 603.8blood creatinine amount (VT:0005328)creatinine clearance (CMO:0000765)42665474981874227Rat
12798520Anxrr55Anxiety related response QTL 554.450.01locomotor behavior trait (VT:0001392)number of rearing movements with lid-pushing in an experimental apparatus (CMO:0002715)429549895112807890Rat
8552782Vie1Viral induced encephalitis QTL 126.4brain integrity trait (VT:0010579)encephalitis incidence/prevalence measurement (CMO:0002361)43182556083531021Rat
8552801Bw143Body weight QTL 1437.3body mass (VT:0001259)change in body weight to body weight ratio (CMO:0002216)43182556083531021Rat
8552809Vie5Viral induced encephalitis QTL 525.3brain integrity trait (VT:0010579)encephalitis incidence/prevalence measurement (CMO:0002361)43182556083531021Rat
8655961Kidm43Kidney mass QTL 4318kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)43427793299067150Rat
1358352Srcrt3Stress Responsive Cort QTL 32.29blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)436615599145611886Rat
1300139Hrtrt6Heart rate QTL 62.85heart pumping trait (VT:2000009)heart rate (CMO:0000002)437703272115372927Rat
61445Strs3Sensitivity to stroke QTL 33cerebrum integrity trait (VT:0010549)post-insult time to onset of cerebrovascular lesion (CMO:0002343)43920822284208222Rat
8694439Bw168Body weight QTL 1689.570.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)43920824784208247Rat
6893678Bw108Body weight QTL 1082.60.006body mass (VT:0001259)body weight (CMO:0000012)44241577787415777Rat
1576305Emca6Estrogen-induced mammary cancer QTL 65.8mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)443414605155469929Rat
1354660Salc1Saline consumption QTL 111.26drinking behavior trait (VT:0001422)saline drink intake rate (CMO:0001627)443414792146942075Rat
1354612Foco1Food consumption QTL 18.87eating behavior trait (VT:0001431)food intake rate (CMO:0000427)443414792146942075Rat
1298082Stresp4Stress response QTL 4blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)446898276145611886Rat
2312567Glom19Glomerulus QTL 191.90.006kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)449906054145611886Rat
4889969Bss96Bone structure and strength QTL 964.9tibia size trait (VT:0100001)tibia cortical bone volume (CMO:0001725)45532485779575658Rat
4889972Bss97Bone structure and strength QTL 975.6tibia size trait (VT:0100001)tibia total bone volume (CMO:0001724)45532485779575658Rat
5685009Bmd86Bone mineral density QTL 863.7tibia mineral mass (VT:1000283)bone mineral density (CMO:0001226)45532485779575658Rat
5685012Bmd87Bone mineral density QTL 875.1tibia mineral mass (VT:1000283)bone mineral content (CMO:0001554)45532485779575658Rat
70200Alc18Alcohol consumption QTL 189.2drinking behavior trait (VT:0001422)ethanol intake volume to total fluid intake volume ratio (CMO:0001591)455324953148360954Rat
1641833Alc21Alcohol consumption QTL 218.60.0001drinking behavior trait (VT:0001422)ethanol drink intake rate (CMO:0001407)455375865125671711Rat
634311Sach7Saccharin preference QTL 7taste sensitivity trait (VT:0001986)saccharin intake volume to total fluid intake volume ratio (CMO:0001601)45579156482134846Rat
631546Bp86Blood pressure QTL 863.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)45579156492484312Rat
1578657Bss12Bone structure and strength QTL 128.9femur morphology trait (VT:0000559)femoral neck cross-sectional area (CMO:0001697)456092756101092756Rat
1578658Bss13Bone structure and strength QTL 138femur strength trait (VT:0010010)femoral neck polar moment of inertia (CMO:0001670)456092756101092756Rat
1558651Swd3Spike wave discharge measurement QTL 34.620.000024brain electrophysiology trait (VT:0010557)brain spike-and-wave discharge frequency (CMO:0001742)45710107792990863Rat
631671Iddm11Insulin dependent diabetes mellitus QTL 113.60.0012blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)45730707579578854Rat
1358363Sradr3Stress Responsive Adrenal Weight QTL 36.19adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)458166424103166424Rat
738009Sach4Saccharine consumption QTL 44.90.000016consumption behavior trait (VT:0002069)saccharin intake volume to total fluid intake volume ratio (CMO:0001601)458640017154427984Rat
738016Alc16Alcohol consumption QTL 163.60.00015consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)458640017154427984Rat
738031Alc14Alcohol consumption QTL 147.60.00003consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)458640017154427984Rat
1549843Bw53Body weight QTL 530.0001body mass (VT:0001259)body weight gain (CMO:0000420)46043912799066957Rat
1549839Bw52Body weight QTL 520.0001body mass (VT:0001259)body weight gain (CMO:0000420)460439127113416139Rat
61418Pia5Pristane induced arthritis QTL 54.5joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)461038901127777403Rat
7394826Bw126Body weight QTL 1260.002body mass (VT:0001259)body weight gain (CMO:0000420)46170810388565113Rat
8552807Vie4Viral induced encephalitis QTL 47.3brain integrity trait (VT:0010579)encephalitis incidence/prevalence measurement (CMO:0002361)46170834183531021Rat
70192BpQTLcluster5Blood pressure QTL cluster 54.183arterial blood pressure trait (VT:2000000)absolute change in mean arterial blood pressure (CMO:0000533)461708341113100992Rat
70192BpQTLcluster5Blood pressure QTL cluster 54.183arterial blood pressure trait (VT:2000000)absolute change in pulse pressure (CMO:0001882)461708341113100992Rat
70192BpQTLcluster5Blood pressure QTL cluster 54.183arterial blood pressure trait (VT:2000000)percent change in systolic blood pressure (CMO:0000747)461708341113100992Rat
70192BpQTLcluster5Blood pressure QTL cluster 54.183arterial blood pressure trait (VT:2000000)percent change in mean arterial blood pressure (CMO:0002035)461708341113100992Rat
70192BpQTLcluster5Blood pressure QTL cluster 54.183arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)461708341113100992Rat
70192BpQTLcluster5Blood pressure QTL cluster 54.183arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)461708341113100992Rat
70192BpQTLcluster5Blood pressure QTL cluster 54.183arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)461708341113100992Rat
2300179Bmd50Bone mineral density QTL 505.90.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)461975371106975371Rat
1641919Alc22Alcohol consumption QTL 220.0005drinking behavior trait (VT:0001422)ethanol drink intake rate (CMO:0001407)462947687125671711Rat
631674Iddm14Insulin dependent diabetes mellitus QTL 14blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)463537179157286626Rat
6478684Anxrr30Anxiety related response QTL 300.00087defecation behavior trait (VT:0010462)defecation rate (CMO:0000998)463812687108812687Rat
6478743Anxrr40Anxiety related response QTL 400.83076defecation behavior trait (VT:0010462)defecation rate (CMO:0000998)463812687108812687Rat
6478772Anxrr49Anxiety related response QTL 490.15488defecation behavior trait (VT:0010462)defecation rate (CMO:0000998)463812687108812687Rat
631651Bp124Blood pressure QTL 1243arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)463938412108938412Rat
2312569Pur19Proteinuria QTL 193.40.001total urine protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)46598924397759057Rat
61330Eau1Experimental allergic uveoretinitis QTL 10.0003uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)470773471132455556Rat
634344Hcar7Hepatocarcinoma resistance QTL 77.8liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)471476518116476518Rat
634344Hcar7Hepatocarcinoma resistance QTL 77.8liver integrity trait (VT:0010547)liver tumorous lesion area to total liver area ratio (CMO:0001075)471476518116476518Rat
631646Stl4Serum triglyceride level QTL 46.50.0001blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)473786419132455556Rat
724522Bp146Blood pressure QTL 1462.20.0021arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)475258970120258970Rat
2302051Pia28Pristane induced arthritis QTL 285.30.001blood autoantibody amount (VT:0003725)serum immunoglobulin G-type rheumatoid factor level relative to an arbitrary reference serum (CMO:0002112)475258970120258970Rat
738015Pia9Pristane induced arthritis QTL 94.50.048joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)476567036121567036Rat
70167Bw22Body weight QTL 223.1body mass (VT:0001259)body weight (CMO:0000012)477307388116916073Rat
1357342Bw40Body weight QTL 400.001body mass (VT:0001259)body weight (CMO:0000012)477307388116916073Rat
631662Hcar2Hepatocarcinoma resistance QTL 23.10.0003liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)479555067124555067Rat
631556Bp135Blood pressure QTL 1350.017arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)479557856116916073Rat
2317586Eae25Experimental allergic encephalomyelitis QTL 259.300000190734863nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis duration (CMO:0001424)47955938084053053Rat
2317586Eae25Experimental allergic encephalomyelitis QTL 259.300000190734863nervous system integrity trait (VT:0010566)post-insult time to onset of experimental autoimmune encephalomyelitis (CMO:0001422)47955938084053053Rat
2317586Eae25Experimental allergic encephalomyelitis QTL 259.300000190734863nervous system integrity trait (VT:0010566)percentage of study population developing experimental autoimmune encephalomyelitis during a period of time (CMO:0001047)47955938084053053Rat
2317586Eae25Experimental allergic encephalomyelitis QTL 259.300000190734863nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis severity score (CMO:0001419)47955938084053053Rat
61364Iddm2Insulin dependent diabetes mellitus QTL 2blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)47956245198542106Rat
2306899Bp338Blood pressure QTL 3380.071arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)481874073119546974Rat
70177Xhs1X-ray hypersensitivity QTL 125.1intestine integrity trait (VT:0010554)post-insult time to onset of moribundity (CMO:0001896)481959983152055009Rat


Additional Information

RGD Curation Notes
Note Type Note Reference
qtl_general number of animals used: 794 G10 generation rats from the advanced intercross line 2317591
qtl_general software used: R/QTL 2317591
qtl_general inducing agent: myelin oligodendrocyte glycoprotein aa1-125 2317591
qtl_general this region is responsible for the severity and susceptibility of the disease and extends 80.9 Mb; also associated to weight loss 2317591
qtl_general measurement method: animals were killed 28-40 days after immunization and Eae scored on the scale of 0-4; when the disease was severe the rats were killed 2317591