Tax1bp1 (Tax1 binding protein 1) - Rat Genome Database

Name: Tax1bp1
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

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Gene: Tax1bp1 (Tax1 binding protein 1) Rattus norvegicus

Analyze

Symbol:

Tax1bp1

Name:

Tax1 binding protein 1

RGD ID:

708579

Description:

Predicted to enable kinase binding activity. Involved in negative regulation of apoptotic process. Orthologous to human TAX1BP1 (Tax1 binding protein 1); PARTICIPATES IN tumor necrosis factor mediated signaling pathway; INTERACTS WITH 1,1,1-trichloro-2,2-bis(4-hydroxyphenyl)ethane; 2,3,7,8-tetrachlorodibenzodioxine; 2,5-hexanedione.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Also known as:

Aa1076; liver regeneration-related protein 2; liver regeneration-related protein LRRG004; LOC246244; MGC94031; Tax1 (human T-cell leukemia virus type I) binding protein 1; Tax1 binding protein 1 homolog; tax1-binding protein 1 homolog; TRAF6-binding protein homolog

RGD Orthologs

Human

Mouse

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	4	81,821,991 - 81,877,906 (+)	NCBI	mRatBN7.2
mRatBN7.2 Ensembl	4	81,821,989 - 81,879,100 (+)	Ensembl
Rnor_6.0	4	82,776,720 - 82,832,586 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	4	82,776,746 - 82,833,773 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	4	147,442,064 - 147,497,945 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	4	81,021,495 - 81,081,478 (+)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	4	81,306,116 - 81,366,099 (+)	NCBI
Celera	4	76,703,346 - 76,759,243 (+)	NCBI		Celera
Cytogenetic Map	4	q24	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

pleomorphic xanthoastrocytoma (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,1,1-trichloro-2,2-bis(4-hydroxyphenyl)ethane (EXP)

1,2-dimethylhydrazine (ISO)

1-nitropyrene (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,5-hexanedione (EXP)

2,6-dinitrotoluene (EXP)

2-butoxyethanol (ISO)

3',5'-cyclic AMP (EXP)

3,3',4,4',5-pentachlorobiphenyl (EXP)

4-hydroxyphenyl retinamide (ISO)

4-phenylbutyric acid (ISO)

acrylamide (EXP,ISO)

aflatoxin B1 (ISO)

ammonium chloride (EXP)

benzo[a]pyrene (ISO)

Benzo[k]fluoranthene (ISO)

bisphenol A (EXP,ISO)

carbon nanotube (ISO)

chloropicrin (ISO)

chromium(6+) (ISO)

cisplatin (ISO)

cobalt dichloride (ISO)

copper atom (ISO)

copper(0) (ISO)

copper(II) sulfate (ISO)

cyclosporin A (ISO)

DDT (EXP)

diazinon (EXP)

dicrotophos (ISO)

dioxygen (ISO)

doxorubicin (ISO)

ethanol (ISO)

flutamide (EXP)

folic acid (ISO)

gallic acid (ISO)

isoflavones (ISO)

isoprenaline (ISO)

miconazole (ISO)

nickel dichloride (EXP)

okadaic acid (ISO)

paracetamol (EXP,ISO)

pirinixic acid (ISO)

silver atom (ISO)

silver(0) (ISO)

sirolimus (ISO)

sunitinib (ISO)

testosterone (ISO)

tetrachloromethane (ISO)

thimerosal (ISO)

tremolite asbestos (ISO)

Tributyltin oxide (EXP)

trichloroethene (EXP)

triptonide (ISO)

tungsten (ISO)

tunicamycin (ISO)

valproic acid (ISO)

vinclozolin (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

apoptotic process (IEA)

negative regulation of apoptotic process (IBA,IMP)

negative regulation of NF-kappaB transcription factor activity (ISO)

Molecular Function

kinase binding (ISO)

metal ion binding (IEA)

protein binding (ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

tumor necrosis factor mediated signaling pathway (ISO)

References

References - curated


1.	Chen J and Chen ZJ, Curr Opin Immunol. 2013 Feb;25(1):4-12. doi: 10.1016/j.coi.2012.12.005. Epub 2013 Jan 8.
2.	De Valck D, etal., Oncogene 1999 Jul 22;18(29):4182-90.
3.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
4.	Harhaj EW and Dixit VM, Cell Res. 2011 Jan;21(1):22-39. doi: 10.1038/cr.2010.166. Epub 2010 Nov 30.
5.	RGD automated import pipeline for gene-chemical interactions
6.	Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.

Additional References at PubMed

PMID:15489334	PMID:16999686	PMID:18239685	PMID:18246070	PMID:18570454	PMID:22695963	PMID:33207181

Genomics

Comparative Map Data

Tax1bp1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	4	81,821,991 - 81,877,906 (+)	NCBI	mRatBN7.2
mRatBN7.2 Ensembl	4	81,821,989 - 81,879,100 (+)	Ensembl
Rnor_6.0	4	82,776,720 - 82,832,586 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	4	82,776,746 - 82,833,773 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	4	147,442,064 - 147,497,945 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	4	81,021,495 - 81,081,478 (+)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	4	81,306,116 - 81,366,099 (+)	NCBI
Celera	4	76,703,346 - 76,759,243 (+)	NCBI		Celera
Cytogenetic Map	4	q24	NCBI

TAX1BP1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38.p13 Ensembl	7	27,739,331 - 27,844,564 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh38	7	27,739,373 - 27,829,767 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh37	7	27,778,992 - 27,869,386 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	7	27,746,263 - 27,835,911 (+)	NCBI	NCBI36		hg18	NCBI36
Build 34	7	27,553,047 - 27,642,119	NCBI
Celera	7	27,768,341 - 27,859,338 (+)	NCBI
Cytogenetic Map	7	p15.2	NCBI
HuRef	7	27,659,766 - 27,751,429 (+)	NCBI		HuRef
CHM1_1	7	27,779,043 - 27,869,039 (+)	NCBI		CHM1_1
CRA_TCAGchr7v2	7	27,830,108 - 27,920,146 (+)	NCBI

Tax1bp1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	6	52,690,677 - 52,743,765 (+)	NCBI	GRCm39		mm39
GRCm39 Ensembl	6	52,690,714 - 52,743,765 (+)	Ensembl
GRCm38	6	52,713,692 - 52,766,780 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	6	52,713,729 - 52,766,780 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	6	52,663,723 - 52,716,774 (+)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	6	52,643,326 - 52,696,062 (+)	NCBI			mm8
Celera	6	53,238,010 - 53,291,146 (+)	NCBI		Celera
Cytogenetic Map	6	B3	NCBI
cM Map	6	25.7	NCBI

Tax1bp1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955410	29,365,844 - 29,444,302 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955410	29,366,295 - 29,445,205 (+)	NCBI	ChiLan1.0	ChiLan1.0

TAX1BP1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	7	27,975,026 - 28,071,519 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	7	27,975,026 - 28,074,513 (+)	Ensembl	panpan1.1		panPan2
Mhudiblu_PPA_v0	7	28,379,135 - 28,476,179 (+)	NCBI	Mhudiblu_PPA_v0		panPan3

TAX1BP1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	14	40,845,532 - 40,939,172 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	14	40,845,564 - 40,944,438 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	14	40,276,376 - 40,369,023 (+)	NCBI
ROS_Cfam_1.0	14	40,785,855 - 40,879,465 (+)	NCBI
ROS_Cfam_1.0 Ensembl	14	40,785,868 - 40,890,087 (+)	Ensembl
UMICH_Zoey_3.1	14	40,898,571 - 40,991,124 (+)	NCBI
UNSW_CanFamBas_1.0	14	40,583,401 - 40,676,877 (+)	NCBI
UU_Cfam_GSD_1.0	14	40,942,264 - 41,035,397 (+)	NCBI

Tax1bp1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405118	85,094,105 - 85,163,976 (+)	NCBI
SpeTri2.0	NW_004936478	4,305,859 - 4,375,785 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

TAX1BP1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	18	44,827,093 - 44,910,235 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	18	44,827,908 - 44,910,265 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	18	49,330,768 - 49,358,053 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

TAX1BP1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	21	30,539,867 - 30,629,372 (-)	NCBI	ChlSab1.1		chlSab2
ChlSab1.1 Ensembl	21	30,540,791 - 30,629,345 (-)	Ensembl	ChlSab1.1		chlSab2
Vero_WHO_p1.0	NW_023666042	74,112,415 - 74,202,111 (+)	NCBI	Vero_WHO_p1.0

Tax1bp1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624739	2,800,453 - 2,894,355 (-)	NCBI	HetGla_female_1.0		hetGla2

Position Markers

RH65631

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	4	81,839,249 - 81,839,388 (+)	MAPPER	mRatBN7.2
Rnor_6.0	4	82,793,930 - 82,794,068	NCBI	Rnor6.0
Rnor_5.0	4	147,459,289 - 147,459,427	UniSTS	Rnor5.0
RGSC_v3.4	4	81,040,517 - 81,040,655	UniSTS	RGSC3.4
Celera	4	76,720,533 - 76,720,671	UniSTS
Cytogenetic Map	4	q24	UniSTS

SGC31789

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	4	81,877,417 - 81,877,517 (+)	MAPPER	mRatBN7.2
Rnor_6.0	4	82,832,098 - 82,832,197	NCBI	Rnor6.0
Rnor_5.0	4	147,497,457 - 147,497,556	UniSTS	Rnor5.0
RGSC_v3.4	4	81,081,108 - 81,081,207	UniSTS	RGSC3.4
Celera	4	76,758,755 - 76,758,854	UniSTS
Cytogenetic Map	4	q24	UniSTS

BE108007

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	4	81,865,137 - 81,865,335 (+)	MAPPER	mRatBN7.2
Rnor_6.0	4	82,819,818 - 82,820,015	NCBI	Rnor6.0
Rnor_5.0	4	147,485,177 - 147,485,374	UniSTS	Rnor5.0
RGSC_v3.4	4	81,066,405 - 81,066,602	UniSTS	RGSC3.4
Celera	4	76,746,475 - 76,746,672	UniSTS
RH 3.4 Map	4	515.5	UniSTS
Cytogenetic Map	4	q24	UniSTS

RH134497

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	4	81,877,482 - 81,877,667 (+)	MAPPER	mRatBN7.2
Rnor_6.0	4	82,832,163 - 82,832,347	NCBI	Rnor6.0
Rnor_5.0	4	147,497,522 - 147,497,706	UniSTS	Rnor5.0
Celera	4	76,758,820 - 76,759,004	UniSTS
RH 3.4 Map	4	515.6	UniSTS
Cytogenetic Map	4	q24	UniSTS

BF390417

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	4	81,857,801 - 81,857,955 (+)	MAPPER	mRatBN7.2
Rnor_6.0	4	82,812,482 - 82,812,635	NCBI	Rnor6.0
Rnor_5.0	4	147,477,841 - 147,477,994	UniSTS	Rnor5.0
RGSC_v3.4	4	81,059,069 - 81,059,222	UniSTS	RGSC3.4
Celera	4	76,739,085 - 76,739,238	UniSTS
RH 3.4 Map	4	515.4	UniSTS
Cytogenetic Map	4	q24	UniSTS

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2303168	Bp330	Blood pressure QTL 330	4.25	0.017	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	4	5214602	146446691	Rat
631261	Tcas3	Tongue tumor susceptibility QTL 3	6.88		tongue integrity trait (VT:0010553)	number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)	4	10814170	91360527	Rat
2316958	Gluco58	Glucose level QTL 58	10		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	4	11320076	180699135	Rat
12798520	Anxrr55	Anxiety related response QTL 55	4.45	0.01	locomotor behavior trait (VT:0001392)	number of rearing movements with lid-pushing in an experimental apparatus (CMO:0002715)	4	32583980	114627242	Rat
8552782	Vie1	Viral induced encephalitis QTL 1	26.4		brain integrity trait (VT:0010579)	encephalitis incidence/prevalence measurement (CMO:0002361)	4	34430484	82490359	Rat
8552801	Bw143	Body weight QTL 143	7.3		body mass (VT:0001259)	change in body weight to body weight ratio (CMO:0002216)	4	34430484	82490359	Rat
8552809	Vie5	Viral induced encephalitis QTL 5	25.3		brain integrity trait (VT:0010579)	encephalitis incidence/prevalence measurement (CMO:0002361)	4	34430484	82490359	Rat
8655961	Kidm43	Kidney mass QTL 43	18		kidney mass (VT:0002707)	both kidneys wet weight (CMO:0000085)	4	36303261	103194984	Rat
1358352	Srcrt3	Stress Responsive Cort QTL 3	2.29		blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	4	38465774	146803430	Rat
1300139	Hrtrt6	Heart rate QTL 6	2.85		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	4	39524264	116179656	Rat
61445	Strs3	Sensitivity to stroke QTL 3	3		cerebrum integrity trait (VT:0010549)	post-insult time to onset of cerebrovascular lesion (CMO:0002343)	4	40433388	85433388	Rat
8694439	Bw168	Body weight QTL 168	9.57	0.001	retroperitoneal fat pad mass (VT:0010430)	retroperitoneal fat pad weight to body weight ratio (CMO:0000635)	4	40433414	85433414	Rat
6893678	Bw108	Body weight QTL 108	2.6	0.006	body mass (VT:0001259)	body weight (CMO:0000012)	4	43457976	88457976	Rat
1576305	Emca6	Estrogen-induced mammary cancer QTL 6	5.8		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	4	44463720	155883716	Rat
1354612	Foco1	Food consumption QTL 1	8.87		eating behavior trait (VT:0001431)	food intake rate (CMO:0000427)	4	44463908	148090542	Rat
1354660	Salc1	Saline consumption QTL 1	11.26		drinking behavior trait (VT:0001422)	saline drink intake rate (CMO:0001627)	4	44463908	148090542	Rat
2312567	Glom19	Glomerulus QTL 19	1.9	0.006	kidney glomerulus morphology trait (VT:0005325)	index of glomerular damage (CMO:0001135)	4	45456990	146803430	Rat
1298082	Stresp4	Stress response QTL 4			blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	4	50119848	146803430	Rat
70200	Alc18	Alcohol consumption QTL 18	9.2		drinking behavior trait (VT:0001422)	ethanol intake volume to total fluid intake volume ratio (CMO:0001591)	4	56647873	149491524	Rat
1641833	Alc21	Alcohol consumption QTL 21	8.6	0.0001	drinking behavior trait (VT:0001422)	ethanol drink intake rate (CMO:0001407)	4	56698790	126192555	Rat
631546	Bp86	Blood pressure QTL 86	3.2		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	4	57114432	91360801	Rat
634311	Sach7	Saccharin preference QTL 7			taste sensitivity trait (VT:0001986)	saccharin intake volume to total fluid intake volume ratio (CMO:0001601)	4	57114432	102114432	Rat
1358363	Sradr3	Stress Responsive Adrenal Weight QTL 3	6.19		adrenal gland mass (VT:0010420)	both adrenal glands wet weight (CMO:0000164)	4	57486946	102486946	Rat
1558651	Swd3	Spike wave discharge measurement QTL 3	4.62	0.000024	brain electrophysiology trait (VT:0010557)	brain spike-and-wave discharge frequency (CMO:0001742)	4	58432133	92991462	Rat
738009	Sach4	Saccharine consumption QTL 4	4.9	0.000016	consumption behavior trait (VT:0002069)	saccharin intake volume to total fluid intake volume ratio (CMO:0001601)	4	59948935	154902892	Rat
738016	Alc16	Alcohol consumption QTL 16	3.6	0.00015	consumption behavior trait (VT:0002069)	ethanol drink intake rate to body weight ratio (CMO:0001616)	4	59948935	154902892	Rat
738031	Alc14	Alcohol consumption QTL 14	7.6	0.00003	consumption behavior trait (VT:0002069)	ethanol drink intake rate to body weight ratio (CMO:0001616)	4	59948935	154902892	Rat
1578657	Bss12	Bone structure and strength QTL 12	8.9		femur morphology trait (VT:0000559)	femoral neck cross-sectional area (CMO:0001697)	4	60220938	105220938	Rat
1578658	Bss13	Bone structure and strength QTL 13	8		femur strength trait (VT:0010010)	femoral neck polar moment of inertia (CMO:0001670)	4	60220938	105220938	Rat
2300179	Bmd50	Bone mineral density QTL 50	5.9	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	4	60928534	105928534	Rat
1549843	Bw53	Body weight QTL 53		0.0001	body mass (VT:0001259)	body weight gain (CMO:0000420)	4	61697658	103194791	Rat
1549839	Bw52	Body weight QTL 52		0.0001	body mass (VT:0001259)	body weight gain (CMO:0000420)	4	61697658	115089733	Rat
61418	Pia5	Pristane induced arthritis QTL 5	4.5		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	4	62277855	128289560	Rat
6478743	Anxrr40	Anxiety related response QTL 40		0.83076	defecation behavior trait (VT:0010462)	defecation rate (CMO:0000998)	4	62753847	107753847	Rat
6478772	Anxrr49	Anxiety related response QTL 49		0.15488	defecation behavior trait (VT:0010462)	defecation rate (CMO:0000998)	4	62753847	107753847	Rat
6478684	Anxrr30	Anxiety related response QTL 30		0.00087	defecation behavior trait (VT:0010462)	defecation rate (CMO:0000998)	4	62753847	107753847	Rat
631651	Bp124	Blood pressure QTL 124	3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	4	62879517	107879517	Rat
7394826	Bw126	Body weight QTL 126		0.002	body mass (VT:0001259)	body weight gain (CMO:0000420)	4	62933269	87483707	Rat
8552807	Vie4	Viral induced encephalitis QTL 4	7.3		brain integrity trait (VT:0010579)	encephalitis incidence/prevalence measurement (CMO:0002361)	4	62933508	82490359	Rat
70192	BpQTLcluster5	Blood pressure QTL cluster 5	4.183		arterial blood pressure trait (VT:2000000)	absolute change in mean arterial blood pressure (CMO:0000533)	4	62933508	114921294	Rat
70192	BpQTLcluster5	Blood pressure QTL cluster 5	4.183		arterial blood pressure trait (VT:2000000)	absolute change in pulse pressure (CMO:0001882)	4	62933508	114921294	Rat
70192	BpQTLcluster5	Blood pressure QTL cluster 5	4.183		arterial blood pressure trait (VT:2000000)	percent change in systolic blood pressure (CMO:0000747)	4	62933508	114921294	Rat
70192	BpQTLcluster5	Blood pressure QTL cluster 5	4.183		arterial blood pressure trait (VT:2000000)	percent change in mean arterial blood pressure (CMO:0002035)	4	62933508	114921294	Rat
70192	BpQTLcluster5	Blood pressure QTL cluster 5	4.183		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	4	62933508	114921294	Rat
70192	BpQTLcluster5	Blood pressure QTL cluster 5	4.183		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	4	62933508	114921294	Rat
70192	BpQTLcluster5	Blood pressure QTL cluster 5	4.183		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	4	62933508	114921294	Rat
631674	Iddm14	Insulin dependent diabetes mellitus QTL 14			blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	4	64528739	157573521	Rat
2312569	Pur19	Proteinuria QTL 19	3.4	0.001	total urine protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	4	65882107	96130297	Rat
61330	Eau1	Experimental allergic uveoretinitis QTL 1		0.0003	uvea integrity trait (VT:0010551)	experimental autoimmune uveitis score (CMO:0001504)	4	70362013	132642728	Rat
634344	Hcar7	Hepatocarcinoma resistance QTL 7	7.8		liver integrity trait (VT:0010547)	liver tumorous lesion number (CMO:0001068)	4	70808386	115808386	Rat
634344	Hcar7	Hepatocarcinoma resistance QTL 7	7.8		liver integrity trait (VT:0010547)	liver tumorous lesion area to total liver area ratio (CMO:0001075)	4	70808386	115808386	Rat
631646	Stl4	Serum triglyceride level QTL 4	6.5	0.0001	blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	4	73169846	132642728	Rat
724522	Bp146	Blood pressure QTL 146	2.2	0.0021	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	4	73630210	118630210	Rat
2302051	Pia28	Pristane induced arthritis QTL 28	5.3	0.001	blood autoantibody amount (VT:0003725)	serum immunoglobulin G-type rheumatoid factor level relative to an arbitrary reference serum (CMO:0002112)	4	73630210	118630210	Rat
70167	Bw22	Body weight QTL 22	3.1		body mass (VT:0001259)	body weight (CMO:0000012)	4	76647384	117676292	Rat
1357342	Bw40	Body weight QTL 40		0.001	body mass (VT:0001259)	body weight (CMO:0000012)	4	76647384	117676292	Rat
631662	Hcar2	Hepatocarcinoma resistance QTL 2	3.1	0.0003	liver integrity trait (VT:0010547)	volume of individual liver tumorous lesion (CMO:0001078)	4	78878504	123878504	Rat
631556	Bp135	Blood pressure QTL 135		0.017	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	4	78881294	117676292	Rat
2317586	Eae25	Experimental allergic encephalomyelitis QTL 25	9.300000190734863		nervous system integrity trait (VT:0010566)	experimental autoimmune encephalomyelitis duration (CMO:0001424)	4	78882817	83007655	Rat
2317586	Eae25	Experimental allergic encephalomyelitis QTL 25	9.300000190734863		nervous system integrity trait (VT:0010566)	post-insult time to onset of experimental autoimmune encephalomyelitis (CMO:0001422)	4	78882817	83007655	Rat
2317586	Eae25	Experimental allergic encephalomyelitis QTL 25	9.300000190734863		nervous system integrity trait (VT:0010566)	percentage of study population developing experimental autoimmune encephalomyelitis during a period of time (CMO:0001047)	4	78882817	83007655	Rat
2317586	Eae25	Experimental allergic encephalomyelitis QTL 25	9.300000190734863		nervous system integrity trait (VT:0010566)	experimental autoimmune encephalomyelitis severity score (CMO:0001419)	4	78882817	83007655	Rat
61364	Iddm2	Insulin dependent diabetes mellitus QTL 2			blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	4	78885890	102684881	Rat
738015	Pia9	Pristane induced arthritis QTL 9	4.5	0.048	joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	4	80694870	125694870	Rat
2306899	Bp338	Blood pressure QTL 338		0.071	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	4	81006124	120102625	Rat
1641919	Alc22	Alcohol consumption QTL 22		0.0005	drinking behavior trait (VT:0001422)	ethanol drink intake rate (CMO:0001407)	4	81192555	126192555	Rat

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	64
Count of miRNA genes:	55
Interacting mature miRNAs:	63
Transcripts:	ENSRNOT00000011371, ENSRNOT00000041988
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium	3	43	57	41	19	41	8	10	74	35	41	11	8
Low								1
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001004199	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006236480	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006236481	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006236482	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006236483	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017592466	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017592467	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017592468	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039107045	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039107046	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039107047	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039107048	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005503148	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AF509819	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AY318959	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC081949	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474011	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ225500	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ230892	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ232704	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ233873	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ234714	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JACYVU010000142	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSRNOT00000011371 ⟹ ENSRNOP00000011371

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	4	81,821,989 - 81,878,180 (+)	Ensembl
Rnor_6.0 Ensembl	4	82,776,746 - 82,832,582 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000041988 ⟹ ENSRNOP00000046052

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	4	81,822,747 - 81,879,100 (+)	Ensembl
Rnor_6.0 Ensembl	4	82,783,686 - 82,833,773 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000104919 ⟹ ENSRNOP00000089029

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	4	81,837,968 - 81,878,180 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000115606 ⟹ ENSRNOP00000087305

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	4	81,822,747 - 81,877,709 (+)	Ensembl

RefSeq Acc Id:

NM_001004199 ⟹ NP_001004199

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	4	81,822,066 - 81,877,906 (+)	NCBI
Rnor_6.0	4	82,776,746 - 82,832,586 (+)	NCBI
Rnor_5.0	4	147,442,064 - 147,497,945 (+)	NCBI
RGSC_v3.4	4	81,021,495 - 81,081,478 (+)	RGD
Celera	4	76,703,346 - 76,759,243 (+)	RGD

Sequence:

show sequence

GGTCTCGGCTGAGAGGCTGTGGCGGTGGCTGCTGAACTCCGGAGCCGGCGTAGCGTGCCGGGCG
GAGACCCTGACGGATTCACAATGACATCCTTTCAAGAAGTCCCATTGCAGACTTCCAACTTTGC
CCATGTCATCTTTCAAAATGTGGCTAAAAGTTACCTTCCTAATGCACACTTGGAGTGTCATTAC
ACCTTAACTCCGTATATTCATCCTCATTCCAAAGATTGGGTTGGTATATTCAAGGTTGGATGGA
GTACTGCTCGTGACTATTACACATTTTTATGGTCTCCTATGCCTGAACAGTATGTGGAAGGATC
AACAGTCAACTGTGTACTAGCATTTCAAGGATATTACCTTCCAAATGATGATGGAGAATTTTAT
CAGTTCTGTTACGTCACCCATAAGGGTGAAATTCGTGGAGCCAGTACTCCTTTCCAGTTTCGAG
CTGCTTCTCCAGTTGAAGAGCTGCTCACTATGGAAGATGAAGGAAATTCTGATATGTTGGTGGT
GACCACAAAAGCTGGCCTTCTTGAGCTGAAAATTGAAAAGACCCTGAAAGAAAAAGAAGAATTG
TTAAAGTTGGTTTCTGTTCTTGAAAAAGAAACAGCACAGCTGAGAGAACAAGTTGGAAGAATGG
AGAGAGAACTCAGCCATGAGAAAAGCCGGTGTGAGCAATTGCAGGCAGAGCAGAAGGGCCTTCT
TGAAGTATCCCAGAGTTTGAGAGTGGAAAATGAAGAGTTTATGAAGAGATACAGTGACGCTACA
TCTAAAGCTCATCAGCTTGAAGAAGACATTGTATCAGTGACACATAAAGCAGTTGAGAAAGAAA
CTGAGCTAGACAGTTTGAAGGATAAACTCAGGAAAGCACAGCAAGAAAAAGAACAACTTGAATG
TCAGCTGAAGACAGAAAAGGATGAGAAGGAGCTTTATAAGGTACATTTGAAGAACACAGAAATA
GAAAATACCAAGCTTGTGTCAGAGATACAGACTTTAAAGAATGTAGATGGAAACAAAGAAAGCA
TGATTACTCATTTCAAAGAAGAGATTGGCAAACTGCAGTCTTGCTTGGCTGACAAGGAAAATTT
GCACAGAGCTCTCCTGCTTACAACCTCAAATAAAGAAGATACATTACTTCTAAAGGAACAACTT
CGCAAAGCGGAGGAACAAGTCCAGGCAACACGGCAAGAACTTATCTTTCTGGCTAAAGAGCTCA
GTGATGCAGTGAATGTGCGAGATAAAACAATGGCAGATCTACATACCGCACGCTTGGAAAATGA
GAGAGTGAAGAAGCAGCTGGCCGACACGCTGGCAGAGCTCCAGTTACATGCTGTAAAGACAGAT
CAGGAAAAGACTGATACACTGGAACATGAACTGAGAAGAGAAGTTGAAGATCTGAAACTCCGGC
TTCAGATGGCTGCAGATCATTACAAAGAAAAGTTTAAGGAATGCCAGAGGCTCCAAAAACAAAT
AAACAAACTTTCAGACCAGTCAGCCAGTTCTAACGGTGTCTTCACAAAGAGAATGGGGAGTCAG
CAGAAAGTGAATGATGCTTCAATAAACACAGACCCAGCTGCTTCTGCTTCTGCCGTGGATGTAA
AGCCAGCAGCATCTTGTGCAGCAGAGACAGATTTTGACATGTCAGCAAAGGATCATGTCTGTGA
AGTGACTAAAGAAATGGCTGAGAAAGTAGAGAAGTATAATAAGTGTAAACAACTCTTGCAGGAT
GAGAAAGCCAAATGCAATAAATATGCTGATGAACTTGCGCAAATGGAGCTGAAGTGGAAAGAGC
AAGTGAGAATTGCTGAGAATGTAAAACTCGAACTCGCTGAGCTAGAGGACAGTTACAGTCTACA
GTTGGCAGAGAAAGACAAAGAAATAAATTGCCTGGCTTCATTTTTGGAAAATCTCTCAAGGGAG
AAGGAACTTACAAAGAGTTTAGAAGATCAAAAAGGAAGGAAAATGGAAGGCCAGAGCCCTCAAC
AAGTCTCACGGTGTCTTAACACCTGCTCTGAGCAGAGTGGGCTCCTCCCTACACTGCCGGCTGC
CCAGCCAGTTCTTCAGTATGGGAACCCTTACACCGCACACGAGACAAGAGATGGAGCAGATGGT
GCTTTTTATCCAGATGAAATCCAGAGGCCACCTGTGCGCGGCCCATCTTGGGAAGACAACGTTG
TCTGTAGCCAGCCTGCTCGAAACCTTAGCAGGCCAGATGGTTTAGAAGACCCGGAGGATAGCAG
AGAAGATGAGAATGTGCCCATTCCTCCTGATCCAGCAAATCAGCATTTACGAGGTCATGGAGCA
GGCTTTTGCTTTGATTCCAGCTTTGATGTTCACAAGAAGTGCCCCCTCTGTGAATTAATGTTCC
CTCCTAACTATGATCAGATCAAATTTGAAGAACACGTTGAAAGTCACTGGAAGGTGTGCCCAAT
GTGCAGCGAGCAGTTCCCACCTGACTACGACCAGCAGGGCTTTGAAAGGCATGTTCAGACCCAT
TTTGATCAGAATGTTCTCAACTTCGACTAGTTTTTAGTGAGAGGTAGTAAAATTTAGCAGTTAA
AAAACAACCCAAAACTCAGATAGAGGCTAAGGAGACTGCGGGCCTGATGCCCTGATTGAGAACT
TTAGAGCGAGCTGTCAATAGGGCCAGGGTACAGCTTTGACTACAATAAATACAGGTTTAATCTG
TTAACCTTGTCTGCTTTAAGGAAAGAGTTTCTGCATTTCTATCTCTACCCTGTTAGCAAAAGTG
TATGAAGAACACAGGAGTTATTTTAATGTTAAAATTGAAAACATATATGTAATAGTTAATTACC
TAGCACAATCAGATTTACAAGTTCCTGTTCACCTTGGTGATTGAGCATGACTACTATTATGTAA
TAAAAGCATTGATCATAACAAAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006236480 ⟹ XP_006236542

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	4	81,821,992 - 81,877,906 (+)	NCBI
Rnor_6.0	4	82,776,720 - 82,832,586 (+)	NCBI
Rnor_5.0	4	147,442,064 - 147,497,945 (+)	NCBI

Sequence:

show sequence

GCTCTCCGCTTAGAGGAGGTGTAGCCGGTCTCGGCTGAGAGGCTGTGGCGGTGGCTGCTGAACT
CCGGAGCCGGCGTAGCGTGCCGGGCGGAGACCCTGACGGATTCACAATGACATCCTTTCAAGAA
GTCCCATTGCAGACTTCCAACTTTGCCCATGTCATCTTTCAAAATGTGGCTAAAAGTTACCTTC
CTAATGCACACTTGGAGTGTCATTACACCTTAACTCCGTATATTCATCCTCATTCCAAAGATTG
GGTTGGTATATTCAAGGTTGGATGGAGTACTGCTCGTGACTATTACACATTTTTATGGTCTCCT
ATGCCTGAACAGTATGTGGAAGGATCAACAGTCAACTGTGTACTAGCATTTCAAGGATATTACC
TTCCAAATGATGATGGAGAATTTTATCAGTTCTGTTACGTCACCCATAAGGGTGAAATTCGTGG
AGCCAGTACTCCTTTCCAGTTTCGAGCTGCTTCTCCAGTTGAAGAGCTGCTCACTATGGAAGAT
GAAGGAAATTCTGATATGTTGGTGGTGACCACAAAAGCTGGCCTTCTTGAGCTGAAAATTGAAA
AGACCCTGAAAGAAAAAGAAGAATTGTTAAAGTTGGTTTCTGTTCTTGAAAAAGAAACAGCACA
GCTGAGAGAACAAGTTGGAAGAATGGAGAGAGAACTCAGCCATGAGAAAAGCCGGTGTGAGCAA
TTGCAGGCAGAGCAGAAGGGCCTTCTTGAAGTATCCCAGAGTTTGAGAGTGGAAAATGAAGAGT
TTATGAAGAGATACAGTGACGCTACATCTAAAGCTCATCAGCTTGAAGAAGACATTGTATCAGT
GACACATAAAGCAGTTGAGAAAGAAACTGAGCTAGACAGTTTGAAGGATAAACTCAGGAAAGCA
CAGCAAGAAAAAGAACAACTTGAATGTCAGCTGAAGACAGAAAAGGATGAGAAGGAGCTTTATA
AGGTACATTTGAAGAACACAGAAATAGAAAATACCAAGCTTGTGTCAGAGATACAGACTTTAAA
GAATGTAGATGGAAACAAAGAAAGCATGATTACTCATTTCAAAGAAGAGATTGGCAAACTGCAG
TCTTGCTTGGCTGACAAGGAAAATTTGCACAGAGCTCTCCTGCTTACAACCTCAAATAAAGAAG
ATACATTACTTCTAAAGGAACAACTTCGCAAAGCGGAGGAACAAGTCCAGGCAACACGGCAAGA
ACTTATCTTTCTGGCTAAAGAGCTCAGTGATGCAGTGAATGTGCGAGATAAAACAATGGCAGAT
CTACATACCGCACGCTTGGAAAATGAGAGAGTGAAGAAGCAGCTGGCCGACACGCTGGCAGAGC
TCCAGTTACATGCTGTAAAGACAGATCAGGAAAAGACTGATACACTGGAACATGAACTGAGAAG
AGAAGTTGAAGATCTGAAACTCCGGCTTCAGATGGCTGCAGATCATTACAAAGAAAAGTTTAAG
GAATGCCAGAGGCTCCAAAAACAAATAAACAAACTTTCAGACCAGTCAGCCAGTTCTAACGGTG
TCTTCACAAAGAGAATGGGGAGTCAGCAGAAAGTGAATGATGCTTCAATAAACACAGACCCAGC
TGCTTCTGCTTCTGCCGTGGATGTAAAGCCAGCAGCATCTTGTGCAGCAGAGACAGATTTTGAC
ATGTCAGCAAAGGATCATGTCTGTGAAGTGACTAAAGAAATGGCTGAGAAAGTAGAGAAGTATA
ATAAGTGTAAACAACTCTTGCAGGATGAGAAAGCCAAATGCAATAAATATGCTGATGAACTTGC
GCAAATGGAGCTGAAGTGGAAAGAGCAAGTGAGAATTGCTGAGAATGTAAAACTCGAACTCGCT
GAGCTAGAGGACAGTTACAGTGTAAGTTCAGAGAATGTAAGACTGGAACTCGCTGAGCTAGAGG
ACAGTTACAGTCTACAGTTGGCAGAGAAAGACAAAGAAATAAATTGCCTGGCTTCATTTTTGGA
AAATCTCTCAAGGGAGAAGGAACTTACAAAGAGTTTAGAAGATCAAAAAGGAAGGAAAATGGAA
GGCCAGAGCCCTCAACAAGTCTCACGGTGTCTTAACACCTGCTCTGAGCAGAGTGGGCTCCTCC
CTACACTGCCGGCTGCCCAGCCAGTTCTTCAGTATGGGAACCCTTACACCGCACACGAGACAAG
AGATGGAGCAGATGGTGCTTTTTATCCAGATGAAATCCAGAGGCCACCTGTGCGCGGCCCATCT
TGGGAAGACAACGTTGTCTGTAGCCAGCCTGCTCGAAACCTTAGCAGGCCAGATGGTTTAGAAG
ACCCGGAGGATAGCAGAGAAGATGAGAATGTGCCCATTCCTCCTGATCCAGCAAATCAGCATTT
ACGAGGTCATGGAGCAGGCTTTTGCTTTGATTCCAGCTTTGATGTTCACAAGAAGTGCCCCCTC
TGTGAATTAATGTTCCCTCCTAACTATGATCAGATCAAATTTGAAGAACACGTTGAAAGTCACT
GGAAGGTGTGCCCAATGTGCAGCGAGCAGTTCCCACCTGACTACGACCAGCAGGGCTTTGAAAG
GCATGTTCAGACCCATTTTGATCAGAATGTTCTCAACTTCGACTAGTTTTTAGTGAGAGGTAGT
AAAATTTAGCAGTTAAAAAACAACCCAAAACTCAGATAGAGGCTAAGGAGACTGCGGGCCTGAT
GCCCTGATTGAGAACTTTAGAGCGAGCTGTCAATAGGGCCAGGGTACAGCTTTGACTACAATAA
ATACAGGTTTAATCTGTTAACCTTGTCTGCTTTAAGGAAAGAGTTTCTGCATTTCTATCTCTAC
CCTGTTAGCAAAAGTGTATGAAGAACACAGGAGTTATTTTAATGTTAAAATTGAAAACATATAT
GTAATAGTTAATTACCTAGCACAATCAGATTTACAAGTTCCTGTTCACCTTGGTGATTGAGCAT
GACTACTATTATGTAATAAAAGCATTGATCATAACA

hide sequence

RefSeq Acc Id:

XM_006236481 ⟹ XP_006236543

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	4	81,822,562 - 81,877,906 (+)	NCBI
Rnor_6.0	4	82,777,107 - 82,832,586 (+)	NCBI
Rnor_5.0	4	147,442,064 - 147,497,945 (+)	NCBI

Sequence:

show sequence

GTTGACCCAGCCTGGGACAAGTAGGGTTGTTTTGGTTTGAGTCTCCCCTGGAGGAAGAGGCGGG
GACTCCCTGTGTCGCCCGGTTTTGCTGTTTACCTGTTTTGGCCGGATCTCCGGCTTCACCTGGT
CTGAGAGATTAGTTAAGTCTTGCTGTTTGGAAAGCAGCACTCCCCCTGGTGCTGGGAGAGGGCT
TTAAGAAATCTTGGGGAGGCTCACTTCGCTCTTGGGCCGTCTGGACTTGATTTCACGACTCCGC
CTCCCTCGCCCCACCCACTGCTGACTCTCACCGGTGTTTGGACCGGTCGGAAGGTGCAAGACGT
GTACAGGCTGGCACTCCTCGCCCGAAACCTGTACTGTTAGAACTTAGCTGTGGTGGACGCTTGT
ATTTCTCTGTTGAGAAGTATGAAGTACAGTTTGTTCCTGAAAGTTTTGTTGGAAAACGTTGTGG
CATTTGACTATGATAGATTTTCGGCTTTCTCGTTATGTTGATTCACAATGACATCCTTTCAAGA
AGTCCCATTGCAGACTTCCAACTTTGCCCATGTCATCTTTCAAAATGTGGCTAAAAGTTACCTT
CCTAATGCACACTTGGAGTGTCATTACACCTTAACTCCGTATATTCATCCTCATTCCAAAGATT
GGGTTGGTATATTCAAGGTTGGATGGAGTACTGCTCGTGACTATTACACATTTTTATGGTCTCC
TATGCCTGAACAGTATGTGGAAGGATCAACAGTCAACTGTGTACTAGCATTTCAAGGATATTAC
CTTCCAAATGATGATGGAGAATTTTATCAGTTCTGTTACGTCACCCATAAGGGTGAAATTCGTG
GAGCCAGTACTCCTTTCCAGTTTCGAGCTGCTTCTCCAGTTGAAGAGCTGCTCACTATGGAAGA
TGAAGGAAATTCTGATATGTTGGTGGTGACCACAAAAGCTGGCCTTCTTGAGCTGAAAATTGAA
AAGACCCTGAAAGAAAAAGAAGAATTGTTAAAGTTGGTTTCTGTTCTTGAAAAAGAAACAGCAC
AGCTGAGAGAACAAGTTGGAAGAATGGAGAGAGAACTCAGCCATGAGAAAAGCCGGTGTGAGCA
ATTGCAGGCAGAGCAGAAGGGCCTTCTTGAAGTATCCCAGAGTTTGAGAGTGGAAAATGAAGAG
TTTATGAAGAGATACAGTGACGCTACATCTAAAGCTCATCAGCTTGAAGAAGACATTGTATCAG
TGACACATAAAGCAGTTGAGAAAGAAACTGAGCTAGACAGTTTGAAGGATAAACTCAGGAAAGC
ACAGCAAGAAAAAGAACAACTTGAATGTCAGCTGAAGACAGAAAAGGATGAGAAGGAGCTTTAT
AAGGTACATTTGAAGAACACAGAAATAGAAAATACCAAGCTTGTGTCAGAGATACAGACTTTAA
AGAATGTAGATGGAAACAAAGAAAGCATGATTACTCATTTCAAAGAAGAGATTGGCAAACTGCA
GTCTTGCTTGGCTGACAAGGAAAATTTGCACAGAGCTCTCCTGCTTACAACCTCAAATAAAGAA
GATACATTACTTCTAAAGGAACAACTTCGCAAAGCGGAGGAACAAGTCCAGGCAACACGGCAAG
AACTTATCTTTCTGGCTAAAGAGCTCAGTGATGCAGTGAATGTGCGAGATAAAACAATGGCAGA
TCTACATACCGCACGCTTGGAAAATGAGAGAGTGAAGAAGCAGCTGGCCGACACGCTGGCAGAG
CTCCAGTTACATGCTGTAAAGACAGATCAGGAAAAGACTGATACACTGGAACATGAACTGAGAA
GAGAAGTTGAAGATCTGAAACTCCGGCTTCAGATGGCTGCAGATCATTACAAAGAAAAGTTTAA
GGAATGCCAGAGGCTCCAAAAACAAATAAACAAACTTTCAGACCAGTCAGCCAGTTCTAACGGT
GTCTTCACAAAGAGAATGGGGAGTCAGCAGAAAGTGAATGATGCTTCAATAAACACAGACCCAG
CTGCTTCTGCTTCTGCCGTGGATGTAAAGCCAGCAGCATCTTGTGCAGCAGAGACAGATTTTGA
CATGTCAGCAAAGGATCATGTCTGTGAAGTGACTAAAGAAATGGCTGAGAAAGTAGAGAAGTAT
AATAAGTGTAAACAACTCTTGCAGGATGAGAAAGCCAAATGCAATAAATATGCTGATGAACTTG
CGCAAATGGAGCTGAAGTGGAAAGAGCAAGTGAGAATTGCTGAGAATGTAAAACTCGAACTCGC
TGAGCTAGAGGACAGTTACAGTGTAAGTTCAGAGAATGTAAGACTGGAACTCGCTGAGCTAGAG
GACAGTTACAGTCTACAGTTGGCAGAGAAAGACAAAGAAATAAATTGCCTGGCTTCATTTTTGG
AAAATCTCTCAAGGGAGAAGGAACTTACAAAGAGTTTAGAAGATCAAAAAGGAAGGAAAATGGA
AGGCCAGAGCCCTCAACAAGTCTCACGGTGTCTTAACACCTGCTCTGAGCAGAGTGGGCTCCTC
CCTACACTGCCGGCTGCCCAGCCAGTTCTTCAGTATGGGAACCCTTACACCGCACACGAGACAA
GAGATGGAGCAGATGGTGCTTTTTATCCAGATGAAATCCAGAGGCCACCTGTGCGCGGCCCATC
TTGGGAAGACAACGTTGTCTGTAGCCAGCCTGCTCGAAACCTTAGCAGGCCAGATGGTTTAGAA
GACCCGGAGGATAGCAGAGAAGATGAGAATGTGCCCATTCCTCCTGATCCAGCAAATCAGCATT
TACGAGGTCATGGAGCAGGCTTTTGCTTTGATTCCAGCTTTGATGTTCACAAGAAGTGCCCCCT
CTGTGAATTAATGTTCCCTCCTAACTATGATCAGATCAAATTTGAAGAACACGTTGAAAGTCAC
TGGAAGGTGTGCCCAATGTGCAGCGAGCAGTTCCCACCTGACTACGACCAGCAGGGCTTTGAAA
GGCATGTTCAGACCCATTTTGATCAGAATGTTCTCAACTTCGACTAGTTTTTAGTGAGAGGTAG
TAAAATTTAGCAGTTAAAAAACAACCCAAAACTCAGATAGAGGCTAAGGAGACTGCGGGCCTGA
TGCCCTGATTGAGAACTTTAGAGCGAGCTGTCAATAGGGCCAGGGTACAGCTTTGACTACAATA
AATACAGGTTTAATCTGTTAACCTTGTCTGCTTTAAGGAAAGAGTTTCTGCATTTCTATCTCTA
CCCTGTTAGCAAAAGTGTATGAAGAACACAGGAGTTATTTTAATGTTAAAATTGAAAACATATA
TGTAATAGTTAATTACCTAGCACAATCAGATTTACAAGTTCCTGTTCACCTTGGTGATTGAGCA
TGACTACTATTATGTAATAAAAGCATTGATCATAACA

hide sequence

RefSeq Acc Id:

XM_006236482 ⟹ XP_006236544

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	4	81,821,991 - 81,877,906 (+)	NCBI
Rnor_6.0	4	82,776,720 - 82,832,586 (+)	NCBI
Rnor_5.0	4	147,442,064 - 147,497,945 (+)	NCBI

Sequence:

show sequence

GCTCTCCGCTTAGAGGAGGTGTAGCCGGTCTCGGCTGAGAGGCTGTGGCGGTGGCTGCTGAACT
CCGGAGCCGGCGTAGCGTGCCGGGCGGAGACCCTGACGGATTCACAATGACATCCTTTCAAGAA
GTCCCATTGCAGACTTCCAACTTTGCCCATGTCATCTTTCAAAATGTGGCTAAAAGTTACCTTC
CTAATGCACACTTGGAGTGTCATTACACCTTAACTCCGTATATTCATCCTCATTCCAAAGATTG
GGTTGGTATATTCAAGGTTGGATGGAGTACTGCTCGTGACTATTACACATTTTTATGGTCTCCT
ATGCCTGAACAGTATGTGGAAGGATCAACAGTCAACTGTGTACTAGCATTTCAAGGATATTACC
TTCCAAATGATGATGGAGAATTTTATCAGTTCTGTTACGTCACCCATAAGGGTGAAATTCGTGG
AGCCAGTACTCCTTTCCAGTTTCGAGCTGCTTCTCCAGTTGAAGAGCTGCTCACTATGGAAGAT
GAAGGAAATTCTGATATGTTGGTGGTGACCACAAAAGCTGGCCTTCTTGAGCTGAAAATTGAAA
AGACCCTGAAAGAAAAAGAAGAATTGTTAAAGTTGGTTTCTGTTCTTGAAAAAGAAACAGCACA
GCTGAGAGAACAAGTTGGAAGAATGGAGAGAGAACTCAGCCATGAGAAAAGCCGGTGTGAGCAA
TTGCAGGCAGAGCAGAAGGGCCTTCTTGAAGTATCCCAGAGTTTGAGAGTGGAAAATGAAGAGT
TTATGAAGAGATACAGTGACGCTACATCTAAAGCTCATCAGCTTGAAGAAGACATTGTATCAGT
GACACATAAAGCAGTTGAGAAAGAAACTGAGCTAGACAGTTTGAAGGATAAACTCAGGAAAGCA
CAGCAAGAAAAAGAACAACTTGAATGTCAGCTGAAGACAGAAAAGGATGAGAAGGAGCTTTATA
AGGTACATTTGAAGAACACAGAAATAGAAAATACCAAGCTTGTGTCAGAGATACAGACTTTAAA
GAATGTAGATGGAAACAAAGAAAGCATGATTACTCATTTCAAAGAAGAGATTGGCAAACTGCAG
TCTTGCTTGGCTGACAAGGAAAATTTGCACAGAGCTCTCCTGCTTACAACCTCAAATAAAGAAG
ATACATTACTTCTAAAGGAACAACTTCGCAAAGCGGAGGAACAAGTCCAGGCAACACGGCAAGA
ACTTATCTTTCTGGCTAAAGAGCTCAGTGATGCAGTGAATGTGCGAGATAAAACAATGGCAGAT
CTACATACCGCACGCTTGGAAAATGAGAGAGTGAAGAAGCAGCTGGCCGACACGCTGGCAGAGC
TCCAGTTACATGCTGTAAAGACAGATCAGGAAAAGACTGATACACTGGAACATGAACTGAGAAG
AGAAGTTGAAGATCTGAAACTCCGGCTTCAGATGGCTGCAGATCATTACAAAGAAAAGTTTAAG
GAATGCCAGAGGCTCCAAAAACAAATAAACAAACTTTCAGACCAGTCAGCCAGTTCTAACGGTG
TCTTCACAAAGAGAATGGGGAGTCAGCAGAAAGTGAATGATGCTTCAATAAACACAGACCCAGC
TGCTTCTGCTTCTGCCGTGGATGTAAAGCCAGCAGCATCTTGTGCAGAGACAGATTTTGACATG
TCAGCAAAGGATCATGTCTGTGAAGTGACTAAAGAAATGGCTGAGAAAGTAGAGAAGTATAATA
AGTGTAAACAACTCTTGCAGGATGAGAAAGCCAAATGCAATAAATATGCTGATGAACTTGCGCA
AATGGAGCTGAAGTGGAAAGAGCAAGTGAGAATTGCTGAGAATGTAAAACTCGAACTCGCTGAG
CTAGAGGACAGTTACAGTGTAAGTTCAGAGAATGTAAGACTGGAACTCGCTGAGCTAGAGGACA
GTTACAGTCTACAGTTGGCAGAGAAAGACAAAGAAATAAATTGCCTGGCTTCATTTTTGGAAAA
TCTCTCAAGGGAGAAGGAACTTACAAAGAGTTTAGAAGATCAAAAAGGAAGGAAAATGGAAGGC
CAGAGCCCTCAACAAGTCTCACGGTGTCTTAACACCTGCTCTGAGCAGAGTGGGCTCCTCCCTA
CACTGCCGGCTGCCCAGCCAGTTCTTCAGTATGGGAACCCTTACACCGCACACGAGACAAGAGA
TGGAGCAGATGGTGCTTTTTATCCAGATGAAATCCAGAGGCCACCTGTGCGCGGCCCATCTTGG
GAAGACAACGTTGTCTGTAGCCAGCCTGCTCGAAACCTTAGCAGGCCAGATGGTTTAGAAGACC
CGGAGGATAGCAGAGAAGATGAGAATGTGCCCATTCCTCCTGATCCAGCAAATCAGCATTTACG
AGGTCATGGAGCAGGCTTTTGCTTTGATTCCAGCTTTGATGTTCACAAGAAGTGCCCCCTCTGT
GAATTAATGTTCCCTCCTAACTATGATCAGATCAAATTTGAAGAACACGTTGAAAGTCACTGGA
AGGTGTGCCCAATGTGCAGCGAGCAGTTCCCACCTGACTACGACCAGCAGGGCTTTGAAAGGCA
TGTTCAGACCCATTTTGATCAGAATGTTCTCAACTTCGACTAGTTTTTAGTGAGAGGTAGTAAA
ATTTAGCAGTTAAAAAACAACCCAAAACTCAGATAGAGGCTAAGGAGACTGCGGGCCTGATGCC
CTGATTGAGAACTTTAGAGCGAGCTGTCAATAGGGCCAGGGTACAGCTTTGACTACAATAAATA
CAGGTTTAATCTGTTAACCTTGTCTGCTTTAAGGAAAGAGTTTCTGCATTTCTATCTCTACCCT
GTTAGCAAAAGTGTATGAAGAACACAGGAGTTATTTTAATGTTAAAATTGAAAACATATATGTA
ATAGTTAATTACCTAGCACAATCAGATTTACAAGTTCCTGTTCACCTTGGTGATTGAGCATGAC
TACTATTATGTAATAAAAGCATTGATCATAACA

hide sequence

RefSeq Acc Id:

XM_006236483 ⟹ XP_006236545

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	4	81,821,992 - 81,877,906 (+)	NCBI
Rnor_6.0	4	82,776,720 - 82,832,586 (+)	NCBI
Rnor_5.0	4	147,442,064 - 147,497,945 (+)	NCBI

Sequence:

show sequence

GCTCTCCGCTTAGAGGAGGTGTAGCCGGTCTCGGCTGAGAGGCTGTGGCGGTGGCTGCTGAACT
CCGGAGCCGGCGTAGCGTGCCGGGCGGAGACCCTGACGGATTCACAATGACATCCTTTCAAGAA
GTCCCATTGCAGACTTCCAACTTTGCCCATGTCATCTTTCAAAATGTGGCTAAAAGTTACCTTC
CTAATGCACACTTGGAGTGTCATTACACCTTAACTCCGTATATTCATCCTCATTCCAAAGATTG
GGTTGGTATATTCAAGGTTGGATGGAGTACTGCTCGTGACTATTACACATTTTTATGGTCTCCT
ATGCCTGAACAGTATGTGGAAGGATCAACAGTCAACTGTGTACTAGCATTTCAAGGATATTACC
TTCCAAATGATGATGGAGAATTTTATCAGTTCTGTTACGTCACCCATAAGGGTGAAATTCGTGG
AGCCAGTACTCCTTTCCAGTTTCGAGCTGCTTCTCCAGTTGAAGAGCTGCTCACTATGGAAGAT
GAAGGAAATTCTGATATGTTGGTGGTGACCACAAAAGCTGGCCTTCTTGAGCTGAAAATTGAAA
AGACCCTGAAAGAAAAAGAAGAATTGTTAAAGTTGGTTTCTGTTCTTGAAAAAGAAACAGCACA
GCTGAGAGAACAAGTTGGAAGAATGGAGAGAGAACTCAGCCATGAGAAAAGCCGGTGTGAGCAA
TTGCAGGCAGAGCAGAAGGGCCTTCTTGAAGTATCCCAGAGTTTGAGAGTGGAAAATGAAGAGT
TTATGAAGAGATACAGTGACGCTACATCTAAAGCTCATCAGCTTGAAGAAGACATTGTATCAGT
GACACATAAAGCAGTTGAGAAAGAAACTGAGCTAGACAGTTTGAAGGATAAACTCAGGAAAGCA
CAGCAAGAAAAAGAACAACTTGAATGTCAGCTGAAGACAGAAAAGGATGAGAAGGAGCTTTATA
AGGTACATTTGAAGAACACAGAAATAGAAAATACCAAGCTTGTGTCAGAGATACAGACTTTAAA
GAATGTAGATGGAAACAAAGAAAGCATGATTACTCATTTCAAAGAAGAGATTGGCAAACTGCAG
TCTTGCTTGGCTGACAAGGAAAATTTGCACAGAGCTCTCCTGCTTACAACCTCAAATAAAGAAG
ATACATTACTTCTAAAGGAACAACTTCGCAAAGCGGAGGAACAAGTCCAGGCAACACGGCAAGA
ACTTATCTTTCTGGCTAAAGAGCTCAGTGATGCAGTGAATGTGCGAGATAAAACAATGGCAGAT
CTACATACCGCACGCTTGGAAAATGAGAGAGTGAAGAAGCAGCTGGCCGACACGCTGGCAGAGC
TCCAGTTACATGCTGTAAAGACAGATCAGGAAAAGACTGATACACTGGAACATGAACTGAGAAG
AGAAGTTGAAGATCTGAAACTCCGGCTTCAGATGGCTGCAGATCATTACAAAGAAAAGTTTAAG
GAATGCCAGAGGCTCCAAAAACAAATAAACAAACTTTCAGACCAGTCAGCCAGTTCTAACGGTG
TCTTCACAAAGAGAATGGGGAGTCAGCAGAAAGTGAATGATGCTTCAATAAACACAGACCCAGC
TGCTTCTGCTTCTGCCGTGGATGTAAAGCCAGCAGCATCTTGTGCAGAGACAGATTTTGACATG
TCAGCAAAGGATCATGTCTGTGAAGTGACTAAAGAAATGGCTGAGAAAGTAGAGAAGTATAATA
AGTGTAAACAACTCTTGCAGGATGAGAAAGCCAAATGCAATAAATATGCTGATGAACTTGCGCA
AATGGAGCTGAAGTGGAAAGAGCAAGTGAGAATTGCTGAGAATGTAAAACTCGAACTCGCTGAG
CTAGAGGACAGTTACAGTCTACAGTTGGCAGAGAAAGACAAAGAAATAAATTGCCTGGCTTCAT
TTTTGGAAAATCTCTCAAGGGAGAAGGAACTTACAAAGAGTTTAGAAGATCAAAAAGGAAGGAA
AATGGAAGGCCAGAGCCCTCAACAAGTCTCACGGTGTCTTAACACCTGCTCTGAGCAGAGTGGG
CTCCTCCCTACACTGCCGGCTGCCCAGCCAGTTCTTCAGTATGGGAACCCTTACACCGCACACG
AGACAAGAGATGGAGCAGATGGTGCTTTTTATCCAGATGAAATCCAGAGGCCACCTGTGCGCGG
CCCATCTTGGGAAGACAACGTTGTCTGTAGCCAGCCTGCTCGAAACCTTAGCAGGCCAGATGGT
TTAGAAGACCCGGAGGATAGCAGAGAAGATGAGAATGTGCCCATTCCTCCTGATCCAGCAAATC
AGCATTTACGAGGTCATGGAGCAGGCTTTTGCTTTGATTCCAGCTTTGATGTTCACAAGAAGTG
CCCCCTCTGTGAATTAATGTTCCCTCCTAACTATGATCAGATCAAATTTGAAGAACACGTTGAA
AGTCACTGGAAGGTGTGCCCAATGTGCAGCGAGCAGTTCCCACCTGACTACGACCAGCAGGGCT
TTGAAAGGCATGTTCAGACCCATTTTGATCAGAATGTTCTCAACTTCGACTAGTTTTTAGTGAG
AGGTAGTAAAATTTAGCAGTTAAAAAACAACCCAAAACTCAGATAGAGGCTAAGGAGACTGCGG
GCCTGATGCCCTGATTGAGAACTTTAGAGCGAGCTGTCAATAGGGCCAGGGTACAGCTTTGACT
ACAATAAATACAGGTTTAATCTGTTAACCTTGTCTGCTTTAAGGAAAGAGTTTCTGCATTTCTA
TCTCTACCCTGTTAGCAAAAGTGTATGAAGAACACAGGAGTTATTTTAATGTTAAAATTGAAAA
CATATATGTAATAGTTAATTACCTAGCACAATCAGATTTACAAGTTCCTGTTCACCTTGGTGAT
TGAGCATGACTACTATTATGTAATAAAAGCATTGATCATAACA

hide sequence

RefSeq Acc Id:

XM_017592467 ⟹ XP_017447956

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	4	81,821,992 - 81,877,906 (+)	NCBI
Rnor_6.0	4	82,776,721 - 82,832,586 (+)	NCBI

Sequence:

show sequence

CTCTCCGCTTAGAGGAGGTGTAGCCGGTCTCGGCTGAGAGGCTGTGGCGGTGGCTGCTGAACTC
CGGAGCCGGCGTAGCGTGCCGGGCGGAGACCCTGACGGATTCACAATGACATCCTTTCAAGAAG
TCCCATTGCAGACTTCCAACTTTGCCCATGTCATCTTTCAAAATGTGGCTAAAAGTTACCTTCC
TAATGCACACTTGGAGTGTCATTACACCTTAACTCCGTATATTCATCCTCATTCCAAAGATTGG
GTTGGTATATTCAAGGTTGGATGGAGTACTGCTCGTGACTATTACACATTTTTATGGTCTCCTA
TGCCTGAACAGTATGTGGAAGGATCAACAGTCAACTGTGTACTAGCATTTCAAGGATATTACCT
TCCAAATGATGATGGAGAATTTTATCAGTTCTGTTACGTCACCCATAAGGGTGAAATTCGTGGA
GCCAGTACTCCTTTCCAGTTTCGAGCTGCTTCTCCAGTTGAAGAGCTGCTCACTATGGAAGATG
AAGGAAATTCTGATATGTTGGTGGTGACCACAAAAGCTGGCCTTCTTGAGCTGAAAATTGAAAA
GACCCTGAAAGAAAAAGAAGAATTGTTAAAGTTGGTTTCTGTTCTTGAAAAAGAAACAGCACAG
CTGAGAGAACAAGTTGGAAGAATGGAGAGAGAACTCAGCCATGAGAAAAGCCGGTGTGAGCAAT
TGCAGGCAGAGCAGAAGGGCCTTCTTGAAGTATCCCAGAGTTTGAGAGTGGAAAATGAAGAGTT
TATGAAGAGATACAGTGACGCTACATCTAAAGCTCATCAGCTTGAAGAAGACATTGTATCAGTG
ACACATAAAGCAGTTGAGAAAGAAACTGAGCTAGACAGTTTGAAGGATAAACTCAGGAAAGCAC
AGCAAGAAAAAGAACAACTTGAATGTCAGCTGAAGACAGAAAAGGATGAGAAGGAGCTTTATAA
GGTACATTTGAAGAACACAGAAATAGAAAATACCAAGCTTGTGTCAGAGATACAGACTTTAAAG
AATGTAGATGGAAACAAAGAAAGCATGATTACTCATTTCAAAGAAGAGATTGGCAAACTGCAGT
CTTGCTTGGCTGACAAGGAAAATTTGCACAGAGCTCTCCTGCTTACAACCTCAAATAAAGAAGA
TACATTACTTCTAAAGGAACAACTTCGCAAAGCGGAGGAACAAGTCCAGGCAACACGGCAAGAA
CTTATCTTTCTGGCTAAAGAGCTCAGTGATGCAGTGAATGTGCGAGATAAAACAATGGCAGATC
TACATACCGCACGCTTGGAAAATGAGAGAGTGAAGAAGCAGCTGGCCGACACGCTGGCAGAGCT
CCAGTTACATGCTGTAAAGACAGATCAGGAAAAGACTGATACACTGGAACATGAACTGAGAAGA
GAAGTTGAAGATCTGAAACTCCGGCTTCAGATGGCTGCAGATCATTACAAAGAAAAGTTTAAGG
AATGCCAGAGGCTCCAAAAACAAATAAACAAACTTTCAGACCAGTCAGCCAGTTCTAACGGTGT
CTTCACAAAGAGAATGGGGAGTCAGCAGAAAGTGAATGATGCTTCAATAAACACAGACCCAGCT
GCTTCTGCTTCTGCCGTGGATGTAAAGCCAGCAGCATCTTGTGCAGCAGAGACAGATTTTGACA
TGTCAGCAAAGGATCATGTCTGTGAAGTGACTAAAGAAATGGCTGAGAAAGTAGAGAAGTATAA
TAAGTGTAAACAACTCTTGCAGGATGAGAAAGCCAAATGCAATAAATATGCTGATGAACTTGCG
CAAATGGAGCTGAAGTGGAAAGAGCAAGTGAGAATTGCTGAGAATGTAAAACTCGAACTCGCTG
AGCTAGAGGACAGTTACAGTGAACTTACAAAGAGTTTAGAAGATCAAAAAGGAAGGAAAATGGA
AGGCCAGAGCCCTCAACAAGTCTCACGGTGTCTTAACACCTGCTCTGAGCAGAGTGGGCTCCTC
CCTACACTGCCGGCTGCCCAGCCAGTTCTTCAGTATGGGAACCCTTACACCGCACACGAGACAA
GAGATGGAGCAGATGGTGCTTTTTATCCAGATGAAATCCAGAGGCCACCTGTGCGCGGCCCATC
TTGGGAAGACAACGTTGTCTGTAGCCAGCCTGCTCGAAACCTTAGCAGGCCAGATGGTTTAGAA
GACCCGGAGGATAGCAGAGAAGATGAGAATGTGCCCATTCCTCCTGATCCAGCAAATCAGCATT
TACGAGGTCATGGAGCAGGCTTTTGCTTTGATTCCAGCTTTGATGTTCACAAGAAGTGCCCCCT
CTGTGAATTAATGTTCCCTCCTAACTATGATCAGATCAAATTTGAAGAACACGTTGAAAGTCAC
TGGAAGGTGTGCCCAATGTGCAGCGAGCAGTTCCCACCTGACTACGACCAGCAGGGCTTTGAAA
GGCATGTTCAGACCCATTTTGATCAGAATGTTCTCAACTTCGACTAGTTTTTAGTGAGAGGTAG
TAAAATTTAGCAGTTAAAAAACAACCCAAAACTCAGATAGAGGCTAAGGAGACTGCGGGCCTGA
TGCCCTGATTGAGAACTTTAGAGCGAGCTGTCAATAGGGCCAGGGTACAGCTTTGACTACAATA
AATACAGGTTTAATCTGTTAACCTTGTCTGCTTTAAGGAAAGAGTTTCTGCATTTCTATCTCTA
CCCTGTTAGCAAAAGTGTATGAAGAACACAGGAGTTATTTTAATGTTAAAATTGAAAACATATA
TGTAATAGTTAATTACCTAGCACAATCAGATTTACAAGTTCCTGTTCACCTTGGTGATTGAGCA
TGACTACTATTATGTAATAAAAGCATTGATCATAACA

hide sequence

RefSeq Acc Id:

XM_017592468 ⟹ XP_017447957

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	4	81,821,992 - 81,877,906 (+)	NCBI
Rnor_6.0	4	82,776,720 - 82,832,586 (+)	NCBI

Sequence:

show sequence

GCTCTCCGCTTAGAGGAGGTGTAGCCGGTCTCGGCTGAGAGGCTGTGGCGGTGGCTGCTGAACT
CCGGAGCCGGCGTAGCGTGCCGGGCGGAGACCCTGACGGATTCACAATGACATCCTTTCAAGAA
GTCCCATTGCAGACTTCCAACTTTGCCCATGTCATCTTTCAAAATGTGGCTAAAAGTTACCTTC
CTAATGCACACTTGGAGTGTCATTACACCTTAACTCCGTATATTCATCCTCATTCCAAAGATTG
GGTTGGTATATTCAAGGTTGGATGGAGTACTGCTCGTGACTATTACACATTTTTATGGTCTCCT
ATGCCTGAACAGTATGTGGAAGGATCAACAGTCAACTGTGTACTAGCATTTCAAGGATATTACC
TTCCAAATGATGATGGAGAATTTTATCAGTTCTGTTACGTCACCCATAAGGGTGAAATTCGTGG
AGCCAGTACTCCTTTCCAGTTTCGAGCTGCTTCTCCAGTTGAAGAGCTGCTCACTATGGAAGAT
GAAGGAAATTCTGATATGTTGGTGGTGACCACAAAAGCTGGCCTTCTTGAGCTGAAAATTGAAA
AGACCCTGAAAGAAAAAGAAGAATTGTTAAAGTTGGTTTCTGTTCTTGAAAAAGAAACAGCACA
GCTGAGAGAACAAGTTGGAAGAATGGAGAGAGAACTCAGCCATGAGAAAAGCCGGTGTGAGCAA
TTGCAGGCAGAGCAGAAGGGCCTTCTTGAAGTATCCCAGAGTTTGAGAGTGGAAAATGAAGAGT
TTATGAAGAGATACAGTGACGCTACATCTAAAGCTCATCAGCTTGAAGAAGACATTGTATCAGT
GACACATAAAGCAGTTGAGAAAGAAACTGAGCTAGACAGTTTGAAGGATAAACTCAGGAAAGCA
CAGCAAGAAAAAGAACAACTTGAATGTCAGCTGAAGACAGAAAAGGATGAGAAGGAGCTTTATA
AGGTACATTTGAAGAACACAGAAATAGAAAATACCAAGCTTGTGTCAGAGATACAGACTTTAAA
GAATGTAGATGGAAACAAAGAAAGCATGATTACTCATTTCAAAGAAGAGATTGGCAAACTGCAG
TCTTGCTTGGCTGACAAGGAAAATTTGCACAGAGCTCTCCTGCTTACAACCTCAAATAAAGAAG
ATACATTACTTCTAAAGGAACAACTTCGCAAAGCGGAGGAACAAGTCCAGGCAACACGGCAAGA
ACTTATCTTTCTGGCTAAAGAGCTCAGTGATGCAGTGAATGTGCGAGATAAAACAATGGCAGAT
CTACATACCGCACGCTTGGAAAATGAGAGAGTGAAGAAGCAGCTGGCCGACACGCTGGCAGAGC
TCCAGTTACATGCTGTAAAGACAGATCAGGAAAAGACTGATACACTGGAACATGAACTGAGAAG
AGAAGTTGAAGATCTGAAACTCCGGCTTCAGATGGCTGCAGATCATTACAAAGAAAAGTTTAAG
GAATGCCAGAGGCTCCAAAAACAAATAAACAAACTTTCAGACCAGTCAGCCAGTTCTAACGGTG
TCTTCACAAAGAGAATGGGGAGTCAGCAGAAAGTGAATGATGCTTCAATAAACACAGACCCAGC
TGCTTCTGCTTCTGCCGTGGATGTAAAGCCAGCAGCATCTTGTGCAGAGACAGATTTTGACATG
TCAGCAAAGGATCATGTCTGTGAAGTGACTAAAGAAATGGCTGAGAAAGTAGAGAAGTATAATA
AGTGTAAACAACTCTTGCAGGATGAGAAAGCCAAATGCAATAAATATGCTGATGAACTTGCGCA
AATGGAGCTGAAGTGGAAAGAGCAAGTGAGAATTGCTGAGAATGTAAAACTCGAACTCGCTGAG
CTAGAGGACAGTTACAGTGAACTTACAAAGAGTTTAGAAGATCAAAAAGGAAGGAAAATGGAAG
GCCAGAGCCCTCAACAAGTCTCACGGTGTCTTAACACCTGCTCTGAGCAGAGTGGGCTCCTCCC
TACACTGCCGGCTGCCCAGCCAGTTCTTCAGTATGGGAACCCTTACACCGCACACGAGACAAGA
GATGGAGCAGATGGTGCTTTTTATCCAGATGAAATCCAGAGGCCACCTGTGCGCGGCCCATCTT
GGGAAGACAACGTTGTCTGTAGCCAGCCTGCTCGAAACCTTAGCAGGCCAGATGGTTTAGAAGA
CCCGGAGGATAGCAGAGAAGATGAGAATGTGCCCATTCCTCCTGATCCAGCAAATCAGCATTTA
CGAGGTCATGGAGCAGGCTTTTGCTTTGATTCCAGCTTTGATGTTCACAAGAAGTGCCCCCTCT
GTGAATTAATGTTCCCTCCTAACTATGATCAGATCAAATTTGAAGAACACGTTGAAAGTCACTG
GAAGGTGTGCCCAATGTGCAGCGAGCAGTTCCCACCTGACTACGACCAGCAGGGCTTTGAAAGG
CATGTTCAGACCCATTTTGATCAGAATGTTCTCAACTTCGACTAGTTTTTAGTGAGAGGTAGTA
AAATTTAGCAGTTAAAAAACAACCCAAAACTCAGATAGAGGCTAAGGAGACTGCGGGCCTGATG
CCCTGATTGAGAACTTTAGAGCGAGCTGTCAATAGGGCCAGGGTACAGCTTTGACTACAATAAA
TACAGGTTTAATCTGTTAACCTTGTCTGCTTTAAGGAAAGAGTTTCTGCATTTCTATCTCTACC
CTGTTAGCAAAAGTGTATGAAGAACACAGGAGTTATTTTAATGTTAAAATTGAAAACATATATG
TAATAGTTAATTACCTAGCACAATCAGATTTACAAGTTCCTGTTCACCTTGGTGATTGAGCATG
ACTACTATTATGTAATAAAAGCATTGATCATAACA

hide sequence

RefSeq Acc Id:

XM_039107045 ⟹ XP_038962973

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	4	81,822,562 - 81,877,906 (+)	NCBI

RefSeq Acc Id:

XM_039107046 ⟹ XP_038962974

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	4	81,821,991 - 81,877,906 (+)	NCBI

RefSeq Acc Id:

XM_039107047 ⟹ XP_038962975

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	4	81,821,992 - 81,877,906 (+)	NCBI

RefSeq Acc Id:

XM_039107048 ⟹ XP_038962976

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	4	81,821,992 - 81,856,049 (+)	NCBI

RefSeq Acc Id:

XR_005503148

RefSeq Status:

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	4	81,821,991 - 81,877,374 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001004199	(Get FASTA)	NCBI Sequence Viewer
	XP_006236542	(Get FASTA)	NCBI Sequence Viewer
	XP_006236543	(Get FASTA)	NCBI Sequence Viewer
	XP_006236544	(Get FASTA)	NCBI Sequence Viewer
	XP_006236545	(Get FASTA)	NCBI Sequence Viewer
	XP_017447956	(Get FASTA)	NCBI Sequence Viewer
	XP_017447957	(Get FASTA)	NCBI Sequence Viewer
	XP_038962973	(Get FASTA)	NCBI Sequence Viewer
	XP_038962974	(Get FASTA)	NCBI Sequence Viewer
	XP_038962975	(Get FASTA)	NCBI Sequence Viewer
	XP_038962976	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH81949	(Get FASTA)	NCBI Sequence Viewer
	AAM46928	(Get FASTA)	NCBI Sequence Viewer
	AAP85370	(Get FASTA)	NCBI Sequence Viewer
	EDL88140	(Get FASTA)	NCBI Sequence Viewer
	Q66HA4	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:

NP_001004199 ⟸ NM_001004199

- UniProtKB:

Q66HA4 (UniProtKB/Swiss-Prot)

- Sequence:

show sequence

MTSFQEVPLQTSNFAHVIFQNVAKSYLPNAHLECHYTLTPYIHPHSKDWVGIFKVGWSTARDYY
TFLWSPMPEQYVEGSTVNCVLAFQGYYLPNDDGEFYQFCYVTHKGEIRGASTPFQFRAASPVEE
LLTMEDEGNSDMLVVTTKAGLLELKIEKTLKEKEELLKLVSVLEKETAQLREQVGRMERELSHE
KSRCEQLQAEQKGLLEVSQSLRVENEEFMKRYSDATSKAHQLEEDIVSVTHKAVEKETELDSLK
DKLRKAQQEKEQLECQLKTEKDEKELYKVHLKNTEIENTKLVSEIQTLKNVDGNKESMITHFKE
EIGKLQSCLADKENLHRALLLTTSNKEDTLLLKEQLRKAEEQVQATRQELIFLAKELSDAVNVR
DKTMADLHTARLENERVKKQLADTLAELQLHAVKTDQEKTDTLEHELRREVEDLKLRLQMAADH
YKEKFKECQRLQKQINKLSDQSASSNGVFTKRMGSQQKVNDASINTDPAASASAVDVKPAASCA
AETDFDMSAKDHVCEVTKEMAEKVEKYNKCKQLLQDEKAKCNKYADELAQMELKWKEQVRIAEN
VKLELAELEDSYSLQLAEKDKEINCLASFLENLSREKELTKSLEDQKGRKMEGQSPQQVSRCLN
TCSEQSGLLPTLPAAQPVLQYGNPYTAHETRDGADGAFYPDEIQRPPVRGPSWEDNVVCSQPAR
NLSRPDGLEDPEDSREDENVPIPPDPANQHLRGHGAGFCFDSSFDVHKKCPLCELMFPPNYDQI
KFEEHVESHWKVCPMCSEQFPPDYDQQGFERHVQTHFDQNVLNFD

hide sequence

RefSeq Acc Id:

XP_006236544 ⟸ XM_006236482

- Peptide Label:

isoform X2

- Sequence:

show sequence

MTSFQEVPLQTSNFAHVIFQNVAKSYLPNAHLECHYTLTPYIHPHSKDWVGIFKVGWSTARDYY
TFLWSPMPEQYVEGSTVNCVLAFQGYYLPNDDGEFYQFCYVTHKGEIRGASTPFQFRAASPVEE
LLTMEDEGNSDMLVVTTKAGLLELKIEKTLKEKEELLKLVSVLEKETAQLREQVGRMERELSHE
KSRCEQLQAEQKGLLEVSQSLRVENEEFMKRYSDATSKAHQLEEDIVSVTHKAVEKETELDSLK
DKLRKAQQEKEQLECQLKTEKDEKELYKVHLKNTEIENTKLVSEIQTLKNVDGNKESMITHFKE
EIGKLQSCLADKENLHRALLLTTSNKEDTLLLKEQLRKAEEQVQATRQELIFLAKELSDAVNVR
DKTMADLHTARLENERVKKQLADTLAELQLHAVKTDQEKTDTLEHELRREVEDLKLRLQMAADH
YKEKFKECQRLQKQINKLSDQSASSNGVFTKRMGSQQKVNDASINTDPAASASAVDVKPAASCA
ETDFDMSAKDHVCEVTKEMAEKVEKYNKCKQLLQDEKAKCNKYADELAQMELKWKEQVRIAENV
KLELAELEDSYSVSSENVRLELAELEDSYSLQLAEKDKEINCLASFLENLSREKELTKSLEDQK
GRKMEGQSPQQVSRCLNTCSEQSGLLPTLPAAQPVLQYGNPYTAHETRDGADGAFYPDEIQRPP
VRGPSWEDNVVCSQPARNLSRPDGLEDPEDSREDENVPIPPDPANQHLRGHGAGFCFDSSFDVH
KKCPLCELMFPPNYDQIKFEEHVESHWKVCPMCSEQFPPDYDQQGFERHVQTHFDQNVLNFD

hide sequence

RefSeq Acc Id:

XP_006236542 ⟸ XM_006236480

- Peptide Label:

isoform X1

- Sequence:

show sequence

MTSFQEVPLQTSNFAHVIFQNVAKSYLPNAHLECHYTLTPYIHPHSKDWVGIFKVGWSTARDYY
TFLWSPMPEQYVEGSTVNCVLAFQGYYLPNDDGEFYQFCYVTHKGEIRGASTPFQFRAASPVEE
LLTMEDEGNSDMLVVTTKAGLLELKIEKTLKEKEELLKLVSVLEKETAQLREQVGRMERELSHE
KSRCEQLQAEQKGLLEVSQSLRVENEEFMKRYSDATSKAHQLEEDIVSVTHKAVEKETELDSLK
DKLRKAQQEKEQLECQLKTEKDEKELYKVHLKNTEIENTKLVSEIQTLKNVDGNKESMITHFKE
EIGKLQSCLADKENLHRALLLTTSNKEDTLLLKEQLRKAEEQVQATRQELIFLAKELSDAVNVR
DKTMADLHTARLENERVKKQLADTLAELQLHAVKTDQEKTDTLEHELRREVEDLKLRLQMAADH
YKEKFKECQRLQKQINKLSDQSASSNGVFTKRMGSQQKVNDASINTDPAASASAVDVKPAASCA
AETDFDMSAKDHVCEVTKEMAEKVEKYNKCKQLLQDEKAKCNKYADELAQMELKWKEQVRIAEN
VKLELAELEDSYSVSSENVRLELAELEDSYSLQLAEKDKEINCLASFLENLSREKELTKSLEDQ
KGRKMEGQSPQQVSRCLNTCSEQSGLLPTLPAAQPVLQYGNPYTAHETRDGADGAFYPDEIQRP
PVRGPSWEDNVVCSQPARNLSRPDGLEDPEDSREDENVPIPPDPANQHLRGHGAGFCFDSSFDV
HKKCPLCELMFPPNYDQIKFEEHVESHWKVCPMCSEQFPPDYDQQGFERHVQTHFDQNVLNFD

hide sequence

RefSeq Acc Id:

XP_006236545 ⟸ XM_006236483

- Peptide Label:

isoform X4

- Sequence:

show sequence

MTSFQEVPLQTSNFAHVIFQNVAKSYLPNAHLECHYTLTPYIHPHSKDWVGIFKVGWSTARDYY
TFLWSPMPEQYVEGSTVNCVLAFQGYYLPNDDGEFYQFCYVTHKGEIRGASTPFQFRAASPVEE
LLTMEDEGNSDMLVVTTKAGLLELKIEKTLKEKEELLKLVSVLEKETAQLREQVGRMERELSHE
KSRCEQLQAEQKGLLEVSQSLRVENEEFMKRYSDATSKAHQLEEDIVSVTHKAVEKETELDSLK
DKLRKAQQEKEQLECQLKTEKDEKELYKVHLKNTEIENTKLVSEIQTLKNVDGNKESMITHFKE
EIGKLQSCLADKENLHRALLLTTSNKEDTLLLKEQLRKAEEQVQATRQELIFLAKELSDAVNVR
DKTMADLHTARLENERVKKQLADTLAELQLHAVKTDQEKTDTLEHELRREVEDLKLRLQMAADH
YKEKFKECQRLQKQINKLSDQSASSNGVFTKRMGSQQKVNDASINTDPAASASAVDVKPAASCA
ETDFDMSAKDHVCEVTKEMAEKVEKYNKCKQLLQDEKAKCNKYADELAQMELKWKEQVRIAENV
KLELAELEDSYSLQLAEKDKEINCLASFLENLSREKELTKSLEDQKGRKMEGQSPQQVSRCLNT
CSEQSGLLPTLPAAQPVLQYGNPYTAHETRDGADGAFYPDEIQRPPVRGPSWEDNVVCSQPARN
LSRPDGLEDPEDSREDENVPIPPDPANQHLRGHGAGFCFDSSFDVHKKCPLCELMFPPNYDQIK
FEEHVESHWKVCPMCSEQFPPDYDQQGFERHVQTHFDQNVLNFD

hide sequence

RefSeq Acc Id:

XP_006236543 ⟸ XM_006236481

- Peptide Label:

isoform X1

- Sequence:

show sequence

MTSFQEVPLQTSNFAHVIFQNVAKSYLPNAHLECHYTLTPYIHPHSKDWVGIFKVGWSTARDYY
TFLWSPMPEQYVEGSTVNCVLAFQGYYLPNDDGEFYQFCYVTHKGEIRGASTPFQFRAASPVEE
LLTMEDEGNSDMLVVTTKAGLLELKIEKTLKEKEELLKLVSVLEKETAQLREQVGRMERELSHE
KSRCEQLQAEQKGLLEVSQSLRVENEEFMKRYSDATSKAHQLEEDIVSVTHKAVEKETELDSLK
DKLRKAQQEKEQLECQLKTEKDEKELYKVHLKNTEIENTKLVSEIQTLKNVDGNKESMITHFKE
EIGKLQSCLADKENLHRALLLTTSNKEDTLLLKEQLRKAEEQVQATRQELIFLAKELSDAVNVR
DKTMADLHTARLENERVKKQLADTLAELQLHAVKTDQEKTDTLEHELRREVEDLKLRLQMAADH
YKEKFKECQRLQKQINKLSDQSASSNGVFTKRMGSQQKVNDASINTDPAASASAVDVKPAASCA
AETDFDMSAKDHVCEVTKEMAEKVEKYNKCKQLLQDEKAKCNKYADELAQMELKWKEQVRIAEN
VKLELAELEDSYSVSSENVRLELAELEDSYSLQLAEKDKEINCLASFLENLSREKELTKSLEDQ
KGRKMEGQSPQQVSRCLNTCSEQSGLLPTLPAAQPVLQYGNPYTAHETRDGADGAFYPDEIQRP
PVRGPSWEDNVVCSQPARNLSRPDGLEDPEDSREDENVPIPPDPANQHLRGHGAGFCFDSSFDV
HKKCPLCELMFPPNYDQIKFEEHVESHWKVCPMCSEQFPPDYDQQGFERHVQTHFDQNVLNFD

hide sequence

RefSeq Acc Id:

XP_017447957 ⟸ XM_017592468

- Peptide Label:

isoform X6

- Sequence:

show sequence

MTSFQEVPLQTSNFAHVIFQNVAKSYLPNAHLECHYTLTPYIHPHSKDWVGIFKVGWSTARDYY
TFLWSPMPEQYVEGSTVNCVLAFQGYYLPNDDGEFYQFCYVTHKGEIRGASTPFQFRAASPVEE
LLTMEDEGNSDMLVVTTKAGLLELKIEKTLKEKEELLKLVSVLEKETAQLREQVGRMERELSHE
KSRCEQLQAEQKGLLEVSQSLRVENEEFMKRYSDATSKAHQLEEDIVSVTHKAVEKETELDSLK
DKLRKAQQEKEQLECQLKTEKDEKELYKVHLKNTEIENTKLVSEIQTLKNVDGNKESMITHFKE
EIGKLQSCLADKENLHRALLLTTSNKEDTLLLKEQLRKAEEQVQATRQELIFLAKELSDAVNVR
DKTMADLHTARLENERVKKQLADTLAELQLHAVKTDQEKTDTLEHELRREVEDLKLRLQMAADH
YKEKFKECQRLQKQINKLSDQSASSNGVFTKRMGSQQKVNDASINTDPAASASAVDVKPAASCA
ETDFDMSAKDHVCEVTKEMAEKVEKYNKCKQLLQDEKAKCNKYADELAQMELKWKEQVRIAENV
KLELAELEDSYSELTKSLEDQKGRKMEGQSPQQVSRCLNTCSEQSGLLPTLPAAQPVLQYGNPY
TAHETRDGADGAFYPDEIQRPPVRGPSWEDNVVCSQPARNLSRPDGLEDPEDSREDENVPIPPD
PANQHLRGHGAGFCFDSSFDVHKKCPLCELMFPPNYDQIKFEEHVESHWKVCPMCSEQFPPDYD
QQGFERHVQTHFDQNVLNFD

hide sequence

RefSeq Acc Id:

XP_017447956 ⟸ XM_017592467

- Peptide Label:

isoform X5

- Sequence:

show sequence

MTSFQEVPLQTSNFAHVIFQNVAKSYLPNAHLECHYTLTPYIHPHSKDWVGIFKVGWSTARDYY
TFLWSPMPEQYVEGSTVNCVLAFQGYYLPNDDGEFYQFCYVTHKGEIRGASTPFQFRAASPVEE
LLTMEDEGNSDMLVVTTKAGLLELKIEKTLKEKEELLKLVSVLEKETAQLREQVGRMERELSHE
KSRCEQLQAEQKGLLEVSQSLRVENEEFMKRYSDATSKAHQLEEDIVSVTHKAVEKETELDSLK
DKLRKAQQEKEQLECQLKTEKDEKELYKVHLKNTEIENTKLVSEIQTLKNVDGNKESMITHFKE
EIGKLQSCLADKENLHRALLLTTSNKEDTLLLKEQLRKAEEQVQATRQELIFLAKELSDAVNVR
DKTMADLHTARLENERVKKQLADTLAELQLHAVKTDQEKTDTLEHELRREVEDLKLRLQMAADH
YKEKFKECQRLQKQINKLSDQSASSNGVFTKRMGSQQKVNDASINTDPAASASAVDVKPAASCA
AETDFDMSAKDHVCEVTKEMAEKVEKYNKCKQLLQDEKAKCNKYADELAQMELKWKEQVRIAEN
VKLELAELEDSYSELTKSLEDQKGRKMEGQSPQQVSRCLNTCSEQSGLLPTLPAAQPVLQYGNP
YTAHETRDGADGAFYPDEIQRPPVRGPSWEDNVVCSQPARNLSRPDGLEDPEDSREDENVPIPP
DPANQHLRGHGAGFCFDSSFDVHKKCPLCELMFPPNYDQIKFEEHVESHWKVCPMCSEQFPPDY
DQQGFERHVQTHFDQNVLNFD

hide sequence

RefSeq Acc Id:

ENSRNOP00000046052 ⟸ ENSRNOT00000041988

RefSeq Acc Id:

ENSRNOP00000011371 ⟸ ENSRNOT00000011371

RefSeq Acc Id:	XP_038962974 ⟸ XM_039107046
- Peptide Label:	isoform X7

RefSeq Acc Id:	XP_038962975 ⟸ XM_039107047
- Peptide Label:	isoform X8

RefSeq Acc Id:	XP_038962976 ⟸ XM_039107048
- Peptide Label:	isoform X9

RefSeq Acc Id:	XP_038962973 ⟸ XM_039107045
- Peptide Label:	isoform X3

RefSeq Acc Id:

ENSRNOP00000089029 ⟸ ENSRNOT00000104919

RefSeq Acc Id:

ENSRNOP00000087305 ⟸ ENSRNOT00000115606

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13693058

Promoter ID:

EPDNEW_R3583

Type:

initiation region

Name:

Tax1bp1_1

Description:

Tax1 binding protein 1

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	4	82,776,731 - 82,776,791	EPDNEW

Strain Variation

Strain Sequence Variants (Rnor 6.0)

ACI/EurMcwi (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

ACI/EurMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

ACI/EurMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

ACI/N (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

ACI/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

BBDP/Wor (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

BN-Lx/CubMcwi (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BN/NHsdMcwi (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BN/NHsdMcwi (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BN/SsN (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BN/SsN (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

BUF/N (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BXH2/CubMcwi (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BXH3/CubMcwi (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

Buf/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

COP/CrCrl (MCW & UW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob) University of Wisconsin (Dr. James Shull)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Charles River Laboratories
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)

DA/OlaHsd (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Envigo
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

F344/DuCrl (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Charles River
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

F344/N (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

F344/NCrl (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Charles River
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

F344/NCrl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

F344/NRrrc (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

F344/Stm (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

FHH/EurMcwi (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

FHH/EurMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

FHH/EurMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

FHL/EurMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

FHL/EurMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

FXLE16/Stm (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

FXLE18/Stm (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

GH/OmrMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

GK/FarMcwi (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

GK/Ox (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

HXB10/IpcvMcwi (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

HXB2/IpcvMcwi (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

HXB20/IpcvMcwi (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

HXB31/IpcvMcwi (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

HXB4/IpcvMcwi (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LE/Stm (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LE/Stm (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LEW/Crl (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Charles River
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEW/Crl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LEW/NCrlBR (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LEXF10A/StmMcwi (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF11/Stm (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF1A/Stm (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF1C/Stm (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF2B/Stm (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF3/Stm (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF4/Stm (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LH/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LH/MavRrrcAek (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Kwitek
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LL/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LL/MavRrrcAek (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Kwitek
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LN/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LN/MavRrrcAek (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Kwitek
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

M520/N (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

M520/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

M520/NRrrcMcwi (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

MHS/Gib (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

MNS/Gib (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

MR/N (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

MR/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

MWF/Hsd (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

PVG/Seac (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

SBH/Ygl (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	SBH/Ygl sequenced by MCW

SBH/Ygl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SBN/Ygl (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	SBN/Ygl sequenced by MCW

SBN/Ygl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SHR/NHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SHR/OlalpcvMcwi (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

SHRSP/A3NCrl (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Charles River
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

SHRSP/Gcrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SR/JrHsd (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Envigo
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

SR/JrHsd (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Harlan Laboratories
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

SR/JrHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SS/Jr (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SS/JrHsdMcwi (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

SS/JrHsdMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

SS/JrHsdMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WAG/Rij (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WAG/RijCrl (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Charles River
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

WKY/Gcrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/N (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

WKY/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

WKY/NCrl (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Charles River
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

WKY/NCrl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/NHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WN/N (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

WN/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Damaging Variants

Assembly: Rnor_5.0

Chromosome	Start Pos	End Pos	Reference Nucleotide	Variant Nucleotide	Variant Type	Strain
4	147481758	147481759	A	G	snv	SR/JrHsd (MCW), FHH/EurMcwi (MCW)

Assembly: Rnor_6.0

Chromosome	Start Pos	End Pos	Reference Nucleotide	Variant Nucleotide	Variant Type	Strain
4	82816399	82816400	A	G	snv	SR/JrHsd (MCW)

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:708579	AgrOrtholog
Ensembl Genes	ENSRNOG00000008393	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Protein	ENSRNOP00000011371	ENTREZGENE, UniProtKB/Swiss-Prot
	ENSRNOP00000046052	ENTREZGENE, UniProtKB/Swiss-Prot
	ENSRNOP00000087305	ENTREZGENE
Ensembl Transcript	ENSRNOT00000011371	ENTREZGENE, UniProtKB/Swiss-Prot
	ENSRNOT00000041988	ENTREZGENE, UniProtKB/Swiss-Prot
	ENSRNOT00000115606	ENTREZGENE
IMAGE_CLONE	IMAGE:7122283	IMAGE-MGC_LOAD
InterPro	CALCOCO1-like	UniProtKB/Swiss-Prot
	CALCOCO1/2_Zn-C2H2	UniProtKB/Swiss-Prot
	SKICH	UniProtKB/Swiss-Prot
KEGG Report	rno:246244	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:94031	IMAGE-MGC_LOAD
NCBI Gene	246244	ENTREZGENE
Pfam	CALCOCO1	UniProtKB/Swiss-Prot
	SKICH	UniProtKB/Swiss-Prot
	Zn-C2H2_12	UniProtKB/Swiss-Prot
PhenoGen	Tax1bp1	PhenoGen
PROSITE	ZF_UBZ1	UniProtKB/Swiss-Prot
UniProt	Q66HA4	ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary	Q7TQ13	UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-03-22	Tax1bp1	Tax1 binding protein 1	Tax1bp1	Tax1 (human T-cell leukemia virus type I) binding protein 1	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2004-09-10	Tax1bp1	Tax1 (human T-cell leukemia virus type I) binding protein 1	LOC246244	Tax1 binding protein 1 homolog	Symbol and Name updated	1299863	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar

RGD Manual Annotations