Hoxa9 (homeobox A9) - Rat Genome Database

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Gene: Hoxa9 (homeobox A9) Rattus norvegicus
Analyze
Symbol: Hoxa9
Name: homeobox A9
RGD ID: 1310001
Description: Predicted to enable DNA-binding transcription activator activity, RNA polymerase II-specific; RNA polymerase II cis-regulatory region sequence-specific DNA binding activity; and enzyme binding activity. Involved in prostate gland development and response to testosterone. Predicted to be located in cytoplasm and nucleoplasm. Predicted to be part of transcription regulator complex. Predicted to be active in nucleus. Orthologous to human HOXA9 (homeobox A9); INTERACTS WITH 17alpha-ethynylestradiol; all-trans-retinoic acid; ammonium chloride.
Type: protein-coding
RefSeq Status: MODEL
Also known as: homeo box A9; homeobox A9-like; homeobox protein Hox-A9; homeobox protein Hox-A9-like; Hoxa9l; LOC100909740; LOC100911710; LOC103689925; LOC297099; RGD1310001; similar to Hoxa-9
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2481,323,235 - 81,329,344 (-)NCBImRatBN7.2
Rnor_6.0482,191,804 - 82,199,025 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl482,192,963 - 82,194,927 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0 Ensembl482,192,963 - 82,194,927 (-)NCBIRnor6.0rn6Rnor6.0
Rnor_5.04146,858,635 - 146,861,993 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4480,524,246 - 80,526,491NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1480,802,831 - 80,804,796NCBI
Celera476,213,941 - 76,221,355 (-)NCBICelera
Cytogenetic Map4q24NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

References

Additional References at PubMed
PMID:8625797   PMID:9013929   PMID:9343407   PMID:9892669   PMID:10082572   PMID:11438208   PMID:15161102   PMID:17327400   PMID:17626057   PMID:17761289   PMID:22269951   PMID:23760953  
PMID:32233950  


Genomics

Comparative Map Data
Hoxa9
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2481,323,235 - 81,329,344 (-)NCBImRatBN7.2
Rnor_6.0482,191,804 - 82,199,025 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl482,192,963 - 82,194,927 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0 Ensembl482,192,963 - 82,194,927 (-)NCBIRnor6.0rn6Rnor6.0
Rnor_5.04146,858,635 - 146,861,993 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4480,524,246 - 80,526,491NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1480,802,831 - 80,804,796NCBI
Celera476,213,941 - 76,221,355 (-)NCBICelera
Cytogenetic Map4q24NCBI
HOXA9
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl727,162,438 - 27,175,180 (-)EnsemblGRCh38hg38GRCh38
GRCh38727,162,438 - 27,165,537 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37727,202,057 - 27,205,156 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36727,168,582 - 27,171,674 (-)NCBINCBI36hg18NCBI36
Build 34726,975,297 - 26,978,389NCBI
Celera727,190,996 - 27,194,088 (-)NCBI
Cytogenetic Map7p15.2NCBI
HuRef727,082,468 - 27,085,560 (-)NCBIHuRef
CHM1_1727,201,773 - 27,204,865 (-)NCBICHM1_1
CRA_TCAGchr7v2727,253,232 - 27,256,324 (-)NCBI
Hoxa9
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39652,200,077 - 52,204,350 (-)NCBIGRCm39mm39
GRCm39 Ensembl652,200,080 - 52,208,069 (-)Ensembl
GRCm38652,223,097 - 52,227,370 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl652,223,100 - 52,231,089 (-)EnsemblGRCm38mm10GRCm38
MGSCv37652,174,053 - 52,177,369 (-)NCBIGRCm37mm9NCBIm37
MGSCv36652,153,637 - 52,156,953 (-)NCBImm8
Celera652,745,693 - 52,749,009 (-)NCBICelera
Cytogenetic Map6B3NCBI
cM Map625.4NCBI
Hoxa9
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541028,856,661 - 28,861,803 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541028,856,661 - 28,861,803 (-)NCBIChiLan1.0ChiLan1.0
HOXA9
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1727,406,624 - 27,409,984 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl727,405,931 - 27,409,984 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0727,806,942 - 27,810,304 (-)NCBIMhudiblu_PPA_v0panPan3
HOXA9
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11440,336,829 - 40,340,533 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1440,337,999 - 40,339,923 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1439,767,687 - 39,772,557 (-)NCBI
ROS_Cfam_1.01440,275,489 - 40,280,356 (-)NCBI
UMICH_Zoey_3.11440,389,486 - 40,394,356 (-)NCBI
UNSW_CanFamBas_1.01440,074,555 - 40,079,418 (-)NCBI
UU_Cfam_GSD_1.01440,433,160 - 40,438,030 (-)NCBI
Hoxa9
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440511884,578,230 - 84,583,058 (-)NCBI
SpeTri2.0NW_0049364783,789,961 - 3,793,116 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
HOXA9
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.11845,404,594 - 45,411,512 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21850,039,919 - 50,044,537 (+)NCBISscrofa10.2Sscrofa10.2susScr3
HOXA9
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12131,199,573 - 31,206,455 (+)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl2131,203,422 - 31,206,433 (+)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604273,527,386 - 73,530,633 (-)NCBIVero_WHO_p1.0
Hoxa9
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247393,440,328 - 3,443,362 (+)NCBIHetGla_female_1.0hetGla2

Position Markers
Hoxa7  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2481,315,812 - 81,316,035 (+)MAPPERmRatBN7.2
Rnor_6.0482,270,177 - 82,270,399NCBIRnor6.0
Rnor_6.0482,184,382 - 82,184,604NCBIRnor6.0
Rnor_5.04146,851,213 - 146,851,435UniSTSRnor5.0
Rnor_5.04146,937,008 - 146,937,230UniSTSRnor5.0
RGSC_v3.4480,515,705 - 80,515,927UniSTSRGSC3.4
Celera476,206,525 - 76,206,747UniSTS
Cytogenetic Map4q24UniSTS
RH135228  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2481,315,812 - 81,315,998 (+)MAPPERmRatBN7.2
Rnor_6.0482,270,177 - 82,270,362NCBIRnor6.0
Rnor_6.0482,184,382 - 82,184,567NCBIRnor6.0
Rnor_5.04146,937,008 - 146,937,193UniSTSRnor5.0
Rnor_5.04146,851,213 - 146,851,398UniSTSRnor5.0
RGSC_v3.4480,515,705 - 80,515,890UniSTSRGSC3.4
Celera476,206,525 - 76,206,710UniSTS
RH 3.4 Map4514.4UniSTS
Cytogenetic Map4q24UniSTS
stSG609369  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2481,324,397 - 81,325,653 (+)MAPPERmRatBN7.2
Rnor_6.0482,278,762 - 82,280,017NCBIRnor6.0
Rnor_6.0482,192,967 - 82,194,222NCBIRnor6.0
Rnor_5.04146,859,798 - 146,861,053UniSTSRnor5.0
Rnor_5.04146,945,593 - 146,946,848UniSTSRnor5.0
RGSC_v3.4480,524,290 - 80,525,545UniSTSRGSC3.4
Celera476,215,104 - 76,216,355UniSTS
Cytogenetic Map4q24UniSTS
Hoxa9  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2481,323,863 - 81,324,428 (+)MAPPERmRatBN7.2
Rnor_6.0482,278,228 - 82,278,792NCBIRnor6.0
Rnor_6.0482,192,433 - 82,192,997NCBIRnor6.0
Rnor_5.04146,859,264 - 146,859,828UniSTSRnor5.0
Rnor_5.04146,945,059 - 146,945,623UniSTSRnor5.0
RGSC_v3.4480,523,756 - 80,524,320UniSTSRGSC3.4
Celera476,214,570 - 76,215,134UniSTS
Cytogenetic Map4q24UniSTS
REN100580  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2481,317,426 - 81,317,651 (+)MAPPERmRatBN7.2
Rnor_6.0482,271,791 - 82,272,015NCBIRnor6.0
Rnor_6.0482,185,996 - 82,186,220NCBIRnor6.0
Rnor_5.04146,852,827 - 146,853,051UniSTSRnor5.0
Rnor_5.04146,938,622 - 146,938,846UniSTSRnor5.0
RGSC_v3.4480,517,319 - 80,517,543UniSTSRGSC3.4
Celera476,208,139 - 76,208,363UniSTS
Cytogenetic Map4q24UniSTS
REN100619  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2481,325,953 - 81,326,200 (+)MAPPERmRatBN7.2
Rnor_6.0482,280,318 - 82,280,564NCBIRnor6.0
Rnor_6.0482,194,523 - 82,194,769NCBIRnor6.0
Rnor_5.04146,861,354 - 146,861,600UniSTSRnor5.0
Rnor_5.04146,947,149 - 146,947,395UniSTSRnor5.0
RGSC_v3.4480,525,846 - 80,526,092UniSTSRGSC3.4
Celera476,216,656 - 76,216,902UniSTS
Cytogenetic Map4q24UniSTS
REN100620  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2481,326,180 - 81,326,436 (+)MAPPERmRatBN7.2
Rnor_6.0482,280,545 - 82,280,800NCBIRnor6.0
Rnor_6.0482,194,750 - 82,195,005NCBIRnor6.0
Rnor_5.04146,861,581 - 146,861,836UniSTSRnor5.0
Rnor_5.04146,947,376 - 146,947,631UniSTSRnor5.0
RGSC_v3.4480,526,073 - 80,526,328UniSTSRGSC3.4
Celera476,216,883 - 76,217,138UniSTS
Cytogenetic Map4q24UniSTS
Hoxa7  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2481,317,167 - 81,317,466 (+)MAPPERmRatBN7.2
Rnor_6.0482,271,532 - 82,271,830NCBIRnor6.0
Rnor_6.0482,185,737 - 82,186,035NCBIRnor6.0
Rnor_5.04146,852,568 - 146,852,866UniSTSRnor5.0
Rnor_5.04146,938,363 - 146,938,661UniSTSRnor5.0
RGSC_v3.4480,517,060 - 80,517,358UniSTSRGSC3.4
Celera476,207,880 - 76,208,178UniSTS
Cytogenetic Map4q24UniSTS
Hoxa9  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2481,324,429 - 81,325,829 (+)MAPPERmRatBN7.2
Rnor_6.0482,278,794 - 82,280,193NCBIRnor6.0
Rnor_6.0482,192,999 - 82,194,398NCBIRnor6.0
Rnor_5.04146,859,830 - 146,861,229UniSTSRnor5.0
Rnor_5.04146,945,625 - 146,947,024UniSTSRnor5.0
RGSC_v3.4480,524,322 - 80,525,721UniSTSRGSC3.4
Celera476,215,136 - 76,216,531UniSTS
Cytogenetic Map4q24UniSTS
Hoxa7  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2481,317,430 - 81,317,507 (+)MAPPERmRatBN7.2
Rnor_6.0482,186,000 - 82,186,076NCBIRnor6.0
Rnor_6.0482,271,795 - 82,271,871NCBIRnor6.0
Rnor_5.04146,938,626 - 146,938,702UniSTSRnor5.0
Rnor_5.04146,852,831 - 146,852,907UniSTSRnor5.0
Celera476,208,143 - 76,208,219UniSTS
Cytogenetic Map4q24UniSTS
Hoxa9  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2481,326,155 - 81,326,222 (+)MAPPERmRatBN7.2
Rnor_6.0482,194,725 - 82,194,791NCBIRnor6.0
Rnor_6.0482,280,520 - 82,280,586NCBIRnor6.0
Rnor_5.04146,947,351 - 146,947,417UniSTSRnor5.0
Rnor_5.04146,861,556 - 146,861,622UniSTSRnor5.0
Celera476,216,858 - 76,216,924UniSTS
Cytogenetic Map4q24UniSTS

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:227
Count of miRNA genes:130
Interacting mature miRNAs:144
Transcripts:ENSRNOT00000071668, ENSRNOT00000071729, ENSRNOT00000072302
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_003752183   ⟹   XP_003752231
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2481,323,235 - 81,329,344 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039108678   ⟹   XP_038964606
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2481,323,235 - 81,329,344 (-)NCBI
Protein Sequences
Protein RefSeqs XP_003752231 (Get FASTA)   NCBI Sequence Viewer  
  XP_038964606 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDL88155 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_038964606   ⟸   XM_039108678
- Peptide Label: isoform X2
RefSeq Acc Id: XP_003752231   ⟸   XM_003752183
- Peptide Label: isoform X1
- UniProtKB: D3ZSU5 (UniProtKB/TrEMBL)
- Sequence:
Protein Domains
Homeobox

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Strain Variation

Strain Sequence Variants (Rnor 6.0)
ACI/EurMcwi (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/EurMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
ACI/EurMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
ACI/N (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
BBDP/Wor (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
BN-Lx/CubMcwi (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
BUF/N (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH2/CubMcwi (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH3/CubMcwi (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
Buf/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
COP/CrCrl (MCW & UW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
University of Wisconsin (Dr. James Shull)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Charles River Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)
DA/OlaHsd (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/DuCrl (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/N (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
F344/NRrrc (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
F344/Stm (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHH/EurMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
FHL/EurMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHL/EurMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
FXLE16/Stm (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE18/Stm (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GH/OmrMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
GK/FarMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GK/Ox (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
HXB10/IpcvMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB2/IpcvMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB20/IpcvMcwi (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB31/IpcvMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB4/IpcvMcwi (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/Crl (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEW/Crl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/NCrlBR (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEXF10A/StmMcwi (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF11/Stm (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1A/Stm (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1C/Stm (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF2B/Stm (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF3/Stm (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF4/Stm (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LH/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LH/MavRrrcAek (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LL/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LL/MavRrrcAek (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LN/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LN/MavRrrcAek (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
M520/NRrrcMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MHS/Gib (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MNS/Gib (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MR/N (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MR/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
MWF/Hsd (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
PVG/Seac (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SBH/Ygl (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBH/Ygl sequenced by MCW
SBH/Ygl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SBN/Ygl (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBN/Ygl sequenced by MCW
SBN/Ygl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHR/NHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHR/OlalpcvMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/A3NCrl (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/Gcrc (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SR/JrHsd (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SR/JrHsd (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Harlan Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SR/JrHsd (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/Jr (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/JrHsdMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SS/JrHsdMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SS/JrHsdMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WAG/Rij (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WAG/RijCrl (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/Gcrc (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/N (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
WKY/NCrl (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/NCrl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/NHsd (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WN/N (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WN/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1310001 AgrOrtholog
  RGD:9112350 AgrOrtholog
Ensembl Genes ENSRNOG00000047484 Ensembl, UniProtKB/TrEMBL
  ENSRNOG00000048146 UniProtKB/TrEMBL
  ENSRNOG00000061871 UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000064444 UniProtKB/TrEMBL
  ENSRNOP00000064914 UniProtKB/TrEMBL
  ENSRNOP00000074975 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000071668 UniProtKB/TrEMBL
  ENSRNOT00000072302 UniProtKB/TrEMBL
  ENSRNOT00000083459 UniProtKB/TrEMBL
InterPro Homeobox_CS UniProtKB/TrEMBL
  Homeobox_Hox9 UniProtKB/TrEMBL
  Homeobox_metazoa UniProtKB/TrEMBL
  Homeodomain UniProtKB/TrEMBL
  Homeodomain-like UniProtKB/TrEMBL
  Hox9_activation_N UniProtKB/TrEMBL
KEGG Report rno:297099 UniProtKB/TrEMBL
NCBI Gene 297099 ENTREZGENE
Pfam Homeobox UniProtKB/TrEMBL
  Hox9_act UniProtKB/TrEMBL
PhenoGen Hoxa9 PhenoGen
PIRSF Homeobox_Hox9 UniProtKB/TrEMBL
PRINTS HOMEOBOX UniProtKB/TrEMBL
PROSITE HOMEOBOX_1 UniProtKB/TrEMBL
  HOMEOBOX_2 UniProtKB/TrEMBL
SMART HOX UniProtKB/TrEMBL
Superfamily-SCOP Homeodomain_like UniProtKB/TrEMBL
UniProt D3ZSU5 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-03-09 Hoxa9  homeobox A9  LOC103689925  homeobox protein Hox-A9  Data Merged 737654 PROVISIONAL
2015-07-29 Hoxa9  homeobox A9  LOC100911710  homeobox protein Hox-A9-like  Data Merged 737654 PROVISIONAL
2015-07-29 Hoxa9  homeobox A9  LOC100909740  homeobox protein Hox-A9-like  Data Merged 737654 PROVISIONAL
2014-08-25 LOC103689925  homeobox protein Hox-A9      Symbol and Name status set to provisional 70820 PROVISIONAL
2012-07-17 Hoxa9  homeobox A9  Hoxa9l  homeobox A9-like  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2012-07-05 LOC100911710  homeobox protein Hox-A9-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2012-07-05 LOC100909740  homeobox protein Hox-A9-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2008-05-14 Hoxa9l  homeobox A9-like  Hoxa9_predicted  homeo box A9 (predicted)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-03-30 Hoxa9_predicted  homeo box A9 (predicted)  RGD1310001_predicted  similar to Hoxa-9 (predicted)  Symbol and Name updated 1299863 APPROVED
2005-01-20 RGD1310001_predicted  similar to Hoxa-9 (predicted)  LOC297099_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC297099_predicted  similar to Hoxa-9 (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL